LOC120096871 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120096871 (U6 spliceosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120096871
Name: U6 spliceosomal RNA
RGD ID: 40944653
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Dog
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81441,851,139 - 41,851,245 (+)NCBIGRCr8
mRatBN7.21441,497,312 - 41,497,418 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1441,497,312 - 41,497,418 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map14p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC120096871
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81441,851,139 - 41,851,245 (+)NCBIGRCr8
mRatBN7.21441,497,312 - 41,497,418 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1441,497,312 - 41,497,418 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map14p11NCBI
RNU6-553P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384105,406,997 - 105,407,092 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4105,406,997 - 105,407,092 (+)EnsemblGRCh38hg38GRCh38
GRCh374106,328,154 - 106,328,249 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map4q24NCBI
CHM1_14106,305,012 - 106,305,107 (+)NCBICHM1_1
T2T-CHM13v2.04108,717,884 - 108,717,987 (+)NCBIT2T-CHM13v2.0
LOC119865090
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2118,567,509 - 18,567,624 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02118,873,116 - 18,873,231 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2118,873,116 - 18,873,231 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12118,655,925 - 18,656,040 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02118,868,304 - 18,868,419 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02118,791,275 - 18,791,390 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in LOC120096871
2 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141759376142336881Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141762256142337007Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
61420Pia6Pristane induced arthritis QTL 64.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)141863134542337007Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005493677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000118921
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1441,497,312 - 41,497,418 (+)Ensembl
RefSeq Acc Id: XR_005493677
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81441,851,139 - 41,851,245 (+)NCBI
mRatBN7.21441,497,312 - 41,497,418 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-15766 BioCyc
Ensembl Genes ENSRNOG00000069714 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000118921 ENTREZGENE
NCBI Gene LOC120096871 ENTREZGENE
PhenoGen LOC120096871 PhenoGen
RatGTEx ENSRNOG00000069714 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-26 LOC120096871  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL