Advanced Search (OLGA)

Gene: Tbc1d1 (TBC1 domain family member 1) Rattus norvegicus

Analyze

Symbol:

Tbc1d1

Name:

TBC1 domain family member 1

RGD ID:

1304562

Description:

Predicted to enable GTPase activator activity. Involved in negative regulation of insulin secretion involved in cellular response to glucose stimulus. Predicted to be active in Golgi apparatus. Orthologous to human TBC1D1 (TBC1 domain family member 1); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rab family mediated signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; atrazine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC360937; TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1; TBC1 domain family, member 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TBC1D1 (TBC1 domain family member 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Tbc1d1 (TBC1 domain family, member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tbc1d1 (TBC1 domain family member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TBC1D1 (TBC1 domain family member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TBC1D1 (TBC1 domain family member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tbc1d1 (TBC1 domain family member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TBC1D1 (TBC1 domain family member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TBC1D1 (TBC1 domain family member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tbc1d1 (TBC1 domain family member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Tbc1d1 (TBC1 domain family, member 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TBC1D1 (TBC1 domain family member 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tbc1d1 (TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	GYP5	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	plx	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tbc1d1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Allele / Splice:

Tbc1d1^Tn(sb)1Fkh

Genetic Models:

SD-Tbc1d1^Tn(sb)1Fkh

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	44,289,241 - 44,489,246 (-)	NCBI		GRCr8
mRatBN7.2	14	43,936,820 - 44,135,133 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	43,935,636 - 44,136,499 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	14	45,598,753 - 45,797,650 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	45,598,743 - 45,797,887 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	45,404,208 - 45,603,325 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	46,594,874 - 46,781,813 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	46,598,646 - 46,797,176 (-)	NCBI
Celera	14	43,078,392 - 43,277,032 (-)	NCBI		Celera
Cytogenetic Map	14	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

CAKUT (ISO)

genetic disease (ISO)

obesity (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

4-hydroxyphenyl retinamide (ISO)

acrolein (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

AICA ribonucleotide (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

calcitriol (ISO)

carbon nanotube (ISO)

chlordecone (ISO)

choline (ISO)

clofibrate (ISO)

cobalt dichloride (EXP,ISO)

Cuprizon (EXP)

curcumin (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

diethylstilbestrol (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (EXP)

hexadecanoic acid (ISO)

hydralazine (ISO)

isotretinoin (ISO)

L-methionine (ISO)

methoxychlor (EXP)

methylmercury chloride (ISO)

N,N-diethyl-m-toluamide (EXP)

nickel atom (ISO)

ochratoxin A (EXP)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

permethrin (EXP)

progesterone (ISO)

quercetin (ISO)

SB 431542 (ISO)

Soman (EXP)

sunitinib (ISO)

testosterone (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

tungsten (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of insulin secretion involved in cellular response to glucose stimulus (IMP)

regulation of cilium assembly (ISO)

regulation of protein localization (IMP)

Cellular Component

Golgi apparatus (IBA)

Molecular Function

GTPase activator activity (IBA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

insulin responsive facilitative sugar transporter mediated glucose transport pathway (TAS)

Rab family mediated signaling pathway (TAS)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal carbohydrate metabolism (IMP)

abnormal endocrine pancreas physiology (IMP)

abnormal respiratory function (IMP)

decreased circulating insulin level (IMP)

decreased fasting circulating glucose level (IMP)

decreased insulin secretion (IMP)

decreased muscle cell glucose uptake (IMP)

decreased pancreatic beta cell mass (IMP)

increased apoptosis (IMP)

increased circulating glucose level (IMP)

increased creatine level (IMP)

increased fasting circulating glucose level (IMP)

increased fatty acid oxidation (IMP)

increased muscle fatigability (IMP)

increased oxygen consumption (IMP)

increased skeletal muscle glycogen level (IMP)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Muscle cells engage Rab8A and myosin Vb in insulin-dependent GLUT4 translocation.	Ishikura S and Klip A, Am J Physiol Cell Physiol. 2008 Oct;295(4):C1016-25. Epub 2008 Aug 13.
3.	Signal transduction meets vesicle traffic: the software and hardware of GLUT4 translocation.	Klip A, etal., Am J Physiol Cell Physiol. 2014 May 15;306(10):C879-86. doi: 10.1152/ajpcell.00069.2014. Epub 2014 Mar 5.
4.	The Rab-GTPase activating protein, TBC1D1, is critical for maintaining normal glucose homeostasis and β-cell mass.	Paglialunga S, etal., Appl Physiol Nutr Metab. 2017 Jun;42(6):647-655. doi: 10.1139/apnm-2016-0585. Epub 2017 Jan 31.
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Ablating the protein TBC1D1 impairs contraction-induced sarcolemmal glucose transporter 4 redistribution but not insulin-mediated responses in rats.	Whitfield J, etal., J Biol Chem. 2017 Oct 6;292(40):16653-16664. doi: 10.1074/jbc.M117.806786. Epub 2017 Aug 14.

Additional References at PubMed

PMID:17646400	PMID:19435856	PMID:21799128	PMID:21832089	PMID:24239544	PMID:25931508

Genomics

Comparative Map Data

Tbc1d1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	44,289,241 - 44,489,246 (-)	NCBI		GRCr8
mRatBN7.2	14	43,936,820 - 44,135,133 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	43,935,636 - 44,136,499 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	14	45,598,753 - 45,797,650 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	45,598,743 - 45,797,887 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	45,404,208 - 45,603,325 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	46,594,874 - 46,781,813 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	46,598,646 - 46,797,176 (-)	NCBI
Celera	14	43,078,392 - 43,277,032 (-)	NCBI		Celera
Cytogenetic Map	14	p11	NCBI

TBC1D1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	37,891,084 - 38,139,173 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	37,891,084 - 38,139,175 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	37,892,705 - 38,140,794 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	37,569,115 - 37,817,189 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	37,715,285 - 37,963,360	NCBI
Celera	4	38,332,894 - 38,580,988 (+)	NCBI		Celera
Cytogenetic Map	4	p14	NCBI
HuRef	4	37,217,333 - 37,465,538 (+)	NCBI		HuRef
CHM1_1	4	37,891,713 - 38,139,897 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	37,860,161 - 38,108,248 (+)	NCBI		T2T-CHM13v2.0

Tbc1d1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	64,313,648 - 64,508,829 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	64,313,648 - 64,508,829 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	64,156,305 - 64,351,486 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	64,156,305 - 64,351,486 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	64,551,450 - 64,742,725 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	64,439,443 - 64,629,322 (+)	NCBI		MGSCv36	mm8
Celera	5	61,447,336 - 61,630,472 (+)	NCBI		Celera
Cytogenetic Map	5	C3.1	NCBI
cM Map	5	32.8	NCBI

Tbc1d1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955443	9,046,946 - 9,258,989 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955443	9,045,312 - 9,270,617 (-)	NCBI	ChiLan1.0	ChiLan1.0

TBC1D1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	38,077,433 - 38,325,867 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	38,269,816 - 38,518,393 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	32,217,463 - 32,466,020 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	38,072,187 - 38,320,136 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	38,084,075 - 38,319,842 (+)	Ensembl	panpan1.1		panPan2

TBC1D1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	74,077,477 - 74,316,725 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	73,992,452 - 74,316,894 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	76,624,987 - 76,864,200 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	74,858,011 - 75,096,848 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	74,858,008 - 75,097,076 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	74,124,126 - 74,362,638 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	74,270,365 - 74,508,809 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	74,650,619 - 74,889,464 (-)	NCBI		UU_Cfam_GSD_1.0

Tbc1d1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	40,209,384 - 40,423,877 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936482	5,885,498 - 6,087,191 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936482	5,874,358 - 6,087,474 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TBC1D1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	29,370,481 - 29,590,571 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	29,370,344 - 29,590,574 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	31,012,141 - 31,053,965 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TBC1D1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	12,158,582 - 12,398,414 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	27	12,156,227 - 12,386,980 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	58,569,944 - 58,810,052 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tbc1d1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624840	6,592,910 - 6,707,932 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624840	6,475,382 - 6,709,568 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tbc1d1
718 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	204
Count of miRNA genes:	83
Interacting mature miRNAs:	85
Transcripts:	ENSRNOT00000002965, ENSRNOT00000029209
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313089	Bss81	Bone structure and strength QTL 81	3.4	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	14	37669719	82669719	Rat
1581500	Renag1	Renal agenesis QTL 1			kidney development trait (VT:0000527)	percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)	14	8170668	68298175	Rat
10755459	Coatc15	Coat color QTL 15		0.01681	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	14	19836944	64836944	Rat
70214	Niddm28	Non-insulin dependent diabetes mellitus QTL 28	4.06		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	39998251	75582726	Rat
1300154	Bp189	Blood pressure QTL 189	3.04		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	14	30883777	68757901	Rat
70187	Pancm5	Pancreatic morphology QTL 5	16.7		pancreas mass (VT:0010144)	pancreas weight to body weight ratio (CMO:0000630)	14	30320092	80829842	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	40793460	98037301	Rat
1358296	Ael3	Aortic elastin QTL 3	3.7	0.00051	aorta elastin amount (VT:0003905)	aortic elastin	14	8267090	53267090	Rat
2313100	Bss82	Bone structure and strength QTL 82	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	14	37669719	82669719	Rat
7387267	Uae42	Urinary albumin excretion QTL 42		0.61	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	14	22167967	67167967	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	95876975	Rat
2313397	Coatc1	Coat color QTL1			coat/hair pigmentation trait (VT:0010463)	coat/hair color measurement (CMO:0001808)	14	18541332	63541332	Rat
2313048	Bss84	Bone structure and strength QTL 84	3.1	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	14	37669719	82669719	Rat
1300136	Rf22	Renal function QTL 22	3.9		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	14	42262529	95023211	Rat
2302045	Pia39	Pristane induced arthritis QTL 39	4.9	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G2a level (CMO:0002116)	14	8267090	53267090	Rat
738037	Hcas6	Hepatocarcinoma susceptibility QTL 6	2.93		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	14	39057237	83368335	Rat
2313084	Bss83	Bone structure and strength QTL 83	2.9	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	14	37669719	82669719	Rat

Markers in Region

BI301681

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	44,000,921 - 44,001,091 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	45,663,995 - 45,664,164	NCBI	Rnor6.0
Rnor_5.0	14	45,469,364 - 45,469,533	UniSTS	Rnor5.0
RGSC_v3.4	14	46,660,495 - 46,660,664	UniSTS	RGSC3.4
Celera	14	43,143,707 - 43,143,876	UniSTS
Cytogenetic Map	14	p11	UniSTS

AU046891

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	43,988,017 - 43,988,221 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	45,651,125 - 45,651,328	NCBI	Rnor6.0
Rnor_5.0	14	45,456,583 - 45,456,786	UniSTS	Rnor5.0
RGSC_v3.4	14	46,647,278 - 46,647,481	UniSTS	RGSC3.4
Celera	14	43,130,791 - 43,130,994	UniSTS
Cytogenetic Map	14	p11	UniSTS

Genetic Models

This gene Tbc1d1 is modified in the following models/strains:

SD-Tbc1d1^Tn(sb)1Fkh

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427317	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001071842	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003752723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006221750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006221751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006221752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273342	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273343	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273344	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_341215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	FQ220061	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000029209 ⟹ ENSRNOP00000033018

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	43,935,636 - 44,059,842 (-)	Ensembl
Rnor_6.0 Ensembl	14	45,598,743 - 45,797,887 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094490 ⟹ ENSRNOP00000078738

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	43,935,636 - 44,136,499 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103384 ⟹ ENSRNOP00000079959

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	43,935,636 - 44,136,499 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113583 ⟹ ENSRNOP00000088613

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	43,935,636 - 44,136,499 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116025 ⟹ ENSRNOP00000079436

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	43,935,636 - 44,136,499 (-)	Ensembl

RefSeq Acc Id:

NM_001427317 ⟹ NP_001414246

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	44,289,241 - 44,488,167 (-)	NCBI

RefSeq Acc Id:

XM_006251004 ⟹ XP_006251066

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	44,289,241 - 44,489,246 (-)	NCBI
mRatBN7.2	14	43,936,820 - 44,135,133 (-)	NCBI
Rnor_6.0	14	45,598,753 - 45,797,650 (-)	NCBI
Rnor_5.0	14	45,404,208 - 45,603,325 (-)	NCBI

Sequence:

show sequence

GCGGAGCCTGTTGCTGCAAGCCACCTCGTACCCGCCGTCTCTTCAACCCGCAAGAGAAGCAGAT
ACTGTGGAGCGGTCCCCATCCCAACAGCGTGGGGCCGCAAGAGCGCAGCCAGCTGAGGACCATA
GACGCCCCGCCCGCCCAGGCCATCTTCTGGGTGCCCCGGAGCACCTGAGCGCCCCAGATCAGCC
CCGAGTTCTGAGCGCGCCACCACACTGGATGCTGCCCTCAGAAGCATGTGAAATAGATTACTTC
ATTTATAGTAGGAAAATAGTAGCAAGCTTTCTTGGCTTTCCAGACCTCTCCCAAGATGGAGGCA
ATCACATTCACAGCGAGGAAGCATCCGTTCCCTAACGAGGTTTCGGTGGACTTCGGCTTGCAGC
TAGTGGGCTCCTTACCCGTGCATTCTCTCACTACAATGCCCATGCTGCCGTGGGTGGTAGCCGA
GGTACGAAGACTCAGTGGCCAGTGCTCCAAAAAGGAGCCTGGGATGAAGCAAGTCCGCCTTTGG
GTTTCGCCCTCCGGACTACGGTGCGAACCTGACCTGAGGAAAAGTCAACCGTGGGACCCCCTGA
TCTGTTCCAGCATCTTTGAGTGCAAGCCTCAGCGTGTTCACAAACTGATTCACAACAGTCAGGA
CCCGAGCTACTTCGCTTGTCTCATTAAGGAGGACGCTGCCCACCAGCAGAGCCTCTGCTATGTA
TTTAAAGCAGATGATCAAACAAAAGTGCCTGAGATCATTAGCTCCATCCGGCAGGCAGGGAAGA
TTGCCCGCCAGGAAGAGCTGCGCTGCCCCTCGGAGTTCGATGACACCTTCGCCAAAAAGTTTGA
GGTGCTCTTCTGTGGCCGGGTCACTGTGGCCCACAAGAAGGCACCACCTGCACTGATCGACGAG
TGTATCGAGAAGTTCAACCATGTGAGCTGTGGCCGCAGAATAGACTGGGATGCGCCCACGGGGC
AACCATCAGCGCCTGGGGCCCGGCCCATGCGCAAATCCTTCTCACAGCCTGGACTGCGCTCGCT
GGCCTTCAGGAAGGAGTTCCAGGATGCTAGCCTCCGCAGTAGCACCTTTAGCTCCTTCGATAAC
GACATCGAAAATCACCTAATCGGCGGGCACAATGTAGTTCAGCCCACAGACATGGAGGAGAACC
GAACTATGCTCTTCACGATTGGCCAATCTGAAGTTTACCTCATCAGTCCTGACACCAAAAAGAT
TGCATTGGAGAAAAATTTTAAGGAGATATCCTTTTGCTCTCAGGGCATCAGGCACGTGGACCAC
TTTGGATTTATCTGCCGAGAGTGCTCAGGTGGCGGTGGCGCCGGCTTTCATTTTGTCTGTTACG
TGTTCCAGTGCACAAATGAAGCTCTGGTTGACGAGATCATGATGACTCTGAAGCAGGCTTTCAC
GGTAGCTGCAGTGCAGCAGACTGCTAAGGCACCAGCCCAGCTGTGTGAGGGCTGCCCCTTGCAG
GGCCTACACAAGCTCTGCGAGAGGATAGAGGGAATGAATTCATCTAAAACCAAATTAGAACTCC
AGAAGCACCTGACCACACTGACCAATCAGGAGCAGGCAATGATATTTGAGGAAGTTCAGAAATT
GAGACCAAGAAACGAGCAGCGAGAGAATGAATTAATTATTTCTTTTCTGAGGTGTTTATACGAA
GAGAAACAAAAGGAACACAGCCATACTGGGGAGCCAAAGCAGACACTGCAGGTGGCAGCAGAGA
ATATTGGGAGTGAACTACCACCCAGTGCTAGCCGGTTCAGGTTAGATTCACTGAAGAACAGAGC
AAAGAGGTCCTTAACAGAGTCCTTAGAGAGCATTCTGTCCCGGGGCAATAAAGCCAGGGGCCTT
CAGGACCATTCCGCCAGTGTGGATCTGGACAGCTCCACTTCTAGTACTCTAAGTAACACCAGCA
AAGAGCTGTCCATGGGTGACAAGGAGGCCTTGCCCATCTCTGAAAGCTCCTTCAAACTCCTTGG
CTCCTCAGATGACCTATCCAGTGACTCAGAGAGCCACATTGCAGAAGAGTCTGCTCTGTTGTCA
CCCCAGCAGGCATTCAGAAGGAGAGCCAACACCCTGAGTCATTTCCCAGTTGAGTGCCCTGCAC
CTCCAGAACCTGCCCAGACCTCTCCAGGGGTGTCTCAAAGAAAACTCATGCGGTATCACTCCGT
GAGCACAGAGACGCCTCATGAACGCAATGTGGACCATCTTCCTGGGGGTGAGTCTCGGTGCTGC
CCAGGGCAGCCTTCAGATCCGCCTCCTCTTCCCCCTCGTCTTAACCCTTCCGCCTCCTCACCAA
ACTTTTTTAAGTACCTAAAACACAATTCCAGTGGAGAACAGAGTGGAAATGCTGTGCCAAAAAG
TGTCTCCTACCGTAATGCCCTGCGGAAAAAACTCCATTCTTCCTCTTCTGTGCCAAATTTTCTA
AAATTTCTGGCTCCTGTAGATGAAAATAACACCTGTGACTTTAAGAACACAAACAGGGACTTTG
AATCCAAAGCAAACCACCTGGGTGACACAGATGGGACCCCAGTGAAGGCCCGGCGGCATTCATG
GAGACAGCAGATATTCCTCCGAGTGGCCACTCCACAGAAGGCTTGTGATTCTCCAAGCAGATAT
GAAGATTATTCAGAGCTGGGAGAGCTCCCTCCACGTTCCCCTTTAGAACCAGTGTGTGAAGATG
GACCATTTGGTCCAGTACAAGAGGAGAAGAAGAAAACGTCTCGTGAGCTTAGAGAGCTGTGGAA
AAAGGCCATCTTGCAGCAGATCCTGCTGCTGAGGATGGAGAAGGAGAACCAGAAGCTACAAGCC
TCTGAGAATGATTTGCTGAACAAACGCCTGAAGCTTGATTATGAGGAAATCACTCCTTGTCTTA
AAGAAGTAACTACAGTGTGGGAAAAGATGCTTAGCACTCCAGGAAGATCCAAAATTAAGTTTGA
TATGGAAAAAGTGCACTCAGCTGTTGGGCAAGGTGTGCCACGTCATCACCGGGGTGAGATCTGG
AAGTTTCTAGCTGAGCAGTTCCACCTTAAACATCCATTTCCCAGTAAACAGCAGCCAAAGGATG
TGCCCTACAAAGAGCTCTTGAAGAAGCTGACCTCCCAGCAGCACGCCATCCTCATTGACCTCGG
GCGAACCTTTCCAACACATCCATACTTCTCTGCCCAGCTTGGAGCAGGTCAGCTGTCACTTTAC
AACATTCTGAAGGCCTACTCACTTCTGGACCAGGAAGTTGGATACTGTCAAGGTCTCAGCTTCG
TGGCAGGCATTTTGCTCCTTCATATGAGTGAGGAAGAAGCATTCAAGATGCTCAAGTTCCTGAT
GTTTGACATGGGGCTGCGGAAACAGTATCGGCCAGACATGATTATTTTACAGATCCAGATGTAC
CAGCTGTCACGGCTCCTCCATGATTACCACAGAGACCTCTACAACCACCTGGAAGAGTATGAGA
TCGGCCCCAGCCTCTACGCAGCTCCCTGGTTTCTCACCGTGTTCGCCTCACAGTTCCCACTTGG
CTTTGTAGCCAGAGTCTTTGATATGATCTTCCTTCAGGGATCAGAGGTCATATTTAAAGTAGCT
TTAAGTCTTTTGGGGAGCCATAAACCCTTGATTCTGCAGCATGAGAACCTGGAAACCATAGTGG
ACTTCATAAAGAACACACTCCCCAACCTAGGCTTGGTGCAGATGGAGAAGACCATCAGTCAGGT
GTTTGAGATGGACATCGCCAAACAGCTACAAGCCTATGAGGTTGAGTACCATGTGCTCCAAGAA
GAACTTATTGATTCCTCTCCTCTCAGTGACAACCAAAGAATGGATAAATTGGAGAAAACCAATA
GCAGCTTGCGCAAACAGAACCTTGACCTCCTGGAACAATTGCAGGTGGCAAATGCTAGGATCCA
AAGCCTCGAAGTCACGGTGGAGAAGCTTCTTACCAGCGAGAGTAAGCTGAAACAGGCTGTGCTG
ACCCTGGAGATGGAGCGCTCCGCCCTGCTGCAGATGGTGGAGGAGCTACGGAGGCAAATGGCCC
AGCCCAGCACTGCAGAGCCGGACTGCACCCGGCTGGAACCTACAGGTGACTGACAGCTGCCAGG
AGAGACTGCGCGTGCACCACTTACACTGTCCGGGCCTTAATGGAGAGAGGGAAGCTGGAAGCAG
AGAAGAGAGAGCTTCTCAGGGAGGAAACTGGCTGACCAGCCTGCAGATTCTTTTGAGCTCAGAA
TTTGGAATTGGAGGACAAAAGTCTCAGAGTTATTGTTGTTTTTGGTTCTAATTCGTCCCCTTTC
CAGTCCTGGTTGTTGTAGCTTTAGATGGTGTGGGCGTGAATAAATTACATGTATGGTTCCTCCT
CCTTCAGGGACACATGGTGTGAAAAGAGCATTCATGACACCAGGGTTTCAGAAGCAAGATGGGC
TTGGAATAGTTCCTCAGGCAAAAATGTGACCATGCCCTTGGTGTCACCATGAGGTGCGGTGGGC
CCTTGTCACCTGAGGTGACCCTGGGAAAGGATGCAGGGGGTTTATTTAAATCGGACGCATTGGT
CGTTCCTGACTCCACAGTCACTCCCATTGGTTCTGAAGAAGCTCATCTTTTACAAACACAGTGT
TTGCTATGTTTTTGCTTACCCTTTGAAGTCACAGTAGTAAATGTTTCATAAGACATCAGTTTTT
TGGTCCCCTGTTATTGCTAGTGTGTAACCTGCAGCTCTGGGGTCTGGCATATTTATTTCTTTGT
GATTGTTTCGTATCCACACTATAGGGCCACATATTTTTTTTTGACTGCCGAATGATGTATCACA
GCCTTGTCTTGAGTCTTGACCTCTCAGAAATCTGATTCCTCATAGAAGGAACAAAACATATCGA
GATTTCCAGGGGCTCCTAAGATTCTAAAACATTGCAAAAGAAACCAGGCTGAAATTGCAGTCAG
ATGTGTGGCAGCTGACAGCTTTTCAGAGGTAGGAAGTACGTTTTGAAAAGCACTCAAACACGTG
CACTCCTTCCTTGGAATGGTGAGGACCCTGTGCCTTTAAGCGGAGTGCAGCTCACAGGTGCCCT
GCTTCCAGCTGGTCCTGTGTGGAGCATCATCCGTGTGTACAGCAAGCTTTTCTATTTTTAACAT
ACAAACAGAGGCTTAGGGAAGAACCACCAGCACAGGGGCCTCCTGCATATTTGAATTGGTCCTA
CCTTGCACTCTACTGGCCCTCTGTTCATGGAGGTCCGTTGCAACTCTCTTGGTAGGAAAAGAGC
CTTGTAAGCCTGGGGTGTAAGGAGAGATCATCCACCATTGGGGTCATATGGGATCTCCTAGCCC
TCTCAAAGGGACACCAAATGGCCAGGAGGGATAGAAGACTCCCTCTTGGACTTGGGTCAGAGAG
TTCTCTCCATAAACCAACATGATCAGTCCCAGTTGATTCGAGAAGGGTTAGTCGAAGGAGGGTT
ACAATGGACAGCTTCTTTCTACATTGTATTTTATTATTTGAATGTTTTAATGTTGAATTTTGGA
CATGTTATTAATGTTCAAAAACACTGACTCTGCAGTAAGAAACAAGCAATAAAACATAATTCAC
ACCCCTG

hide sequence

RefSeq Acc Id:

XM_006251005 ⟹ XP_006251067

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	44,289,241 - 44,489,246 (-)	NCBI
mRatBN7.2	14	43,936,820 - 44,135,132 (-)	NCBI
Rnor_6.0	14	45,598,753 - 45,797,650 (-)	NCBI
Rnor_5.0	14	45,404,208 - 45,603,325 (-)	NCBI

Sequence:

show sequence

GCGGAGCCTGTTGCTGCAAGCCACCTCGTACCCGCCGTCTCTTCAACCCGCAAGAGAAGCAGAT
ACTGTGGAGCGGTCCCCATCCCAACAGCGTGGGGCCGCAAGAGCGCAGCCAGCTGAGGACCATA
GACGCCCCGCCCGCCCAGGCCATCTTCTGGGTGCCCCGGAGCACCTGAGCGCCCCAGATCAGCC
CCGAGTTCTGAGCGCGCCACCACACTGGATGCTGCCCTCAGAAGCATGTGAAATAGATTACTTC
ATTTATAGTAGGAAAATAGTAGCAAGCTTTCTTGGCTTTCCAGACCTCTCCCAAGATGGAGGCA
ATCACATTCACAGCGAGGAAGCATCCGTTCCCTAACGAGGTTTCGGTGGACTTCGGCTTGCAGC
TAGTGGGCTCCTTACCCGTGCATTCTCTCACTACAATGCCCATGCTGCCGTGGGTGGTAGCCGA
GGTACGAAGACTCAGTGGCCAGTGCTCCAAAAAGGAGCCTGGGATGAAGCAAGTCCGCCTTTGG
GTTTCGCCCTCCGGACTACGGTGCGAACCTGACCTGAGGAAAAGTCAACCGTGGGACCCCCTGA
TCTGTTCCAGCATCTTTGAGTGCAAGCCTCAGCGTGTTCACAAACTGATTCACAACAGTCAGGA
CCCGAGCTACTTCGCTTGTCTCATTAAGGAGGACGCTGCCCACCAGCAGAGCCTCTGCTATGTA
TTTAAAGCAGATGATCAAACAAAAGTGCCTGAGATCATTAGCTCCATCCGGCAGGCAGGGAAGA
TTGCCCGCCAGGAAGAGCTGCGCTGCCCCTCGGAGTTCGATGACACCTTCGCCAAAAAGTTTGA
GGTGCTCTTCTGTGGCCGGGTCACTGTGGCCCACAAGAAGGCACCACCTGCACTGATCGACGAG
TGTATCGAGAAGTTCAACCATGTGAGCTGTGGCCGCAGAATAGACTGGGATGCGCCCACGGGGC
AACCATCAGCGCCTGGGGCCCGGCCCATGCGCAAATCCTTCTCACAGCCTGGACTGCGCTCGCT
GGCCTTCAGGAAGGAGTTCCAGGATGCTAGCCTCCGCAGTAGCACCTTTAGCTCCTTCGATAAC
GACATCGAAAATCACCTAATCGGCGGGCACAATGTAGTTCAGCCCACAGACATGGAGGAGAACC
GAACTATGCTCTTCACGATTGGCCAATCTGAAGTTTACCTCATCAGTCCTGACACCAAAAAGAT
TGCATTGGAGAAAAATTTTAAGGAGATATCCTTTTGCTCTCAGGGCATCAGGCACGTGGACCAC
TTTGGATTTATCTGCCGAGAGTGCTCAGGTGGCGGTGGCGCCGGCTTTCATTTTGTCTGTTACG
TGTTCCAGTGCACAAATGAAGCTCTGGTTGACGAGATCATGATGACTCTGAAGCAGGCTTTCAC
GGTAGCTGCAGTGCAGCAGACTGCTAAGGCACCAGCCCAGCTGTGTGAGGGCTGCCCCTTGCAG
GGCCTACACAAGCTCTGCGAGAGGATAGAGGGAATGAATTCATCTAAAACCAAATTAGAACTCC
AGAAGCACCTGACCACACTGACCAATCAGGAGCAGGCAATGATATTTGAGGAAGTTCAGAAATT
GAGACCAAGAAACGAGCAGCGAGAGAATGAATTAATTATTTCTTTTCTGAGGTGTTTATACGAA
GAGAAACAAAAGGAACACAGCCATACTGGGGAGCCAAAGCAGACACTGCAGGTGGCAGCAGAGA
ATATTGGGAGTGAACTACCACCCAGTGCTAGCCGGTTCAGGTTAGATTCACTGAAGAACAGAGC
AAAGAGGTCCTTAACAGAGTCCTTAGAGAGCATTCTGTCCCGGGGCAATAAAGCCAGGGGCCTT
CAGGACCATTCCGCCAGTGTGGATCTGGACAGCTCCACTTCTAGTACTCTAAGTAACACCAGCA
AAGAGCTGTCCATGGGTGACAAGGAGGCCTTGCCCATCTCTGAAAGCTCCTTCAAACTCCTTGG
CTCCTCAGATGACCTATCCAGTGACTCAGAGAGCCACATTGCAGAAGAGTCTGCTCTGTTGTCA
CCCCAGCAGGCATTCAGAAGGAGAGCCAACACCCTGAGTCATTTCCCAGTTGAGTGCCCTGCAC
CTCCAGAACCTGCCCAGACCTCTCCAGGGGTGTCTCAAAGAAAACTCATGCGGTATCACTCCGT
GAGCACAGAGACGCCTCATGAACGCAATGTCTCCTACCGTAATGCCCTGCGGAAAAAACTCCAT
TCTTCCTCTTCTGTGCCAAATTTTCTAAAATTTCTGGCTCCTGTAGATGAAAATAACACCTGTG
ACTTTAAGAACACAAACAGGGACTTTGAATCCAAAGCAAACCACCTGGGTGACACAGATGGGAC
CCCAGTGAAGGCCCGGCGGCATTCATGGAGACAGCAGATATTCCTCCGAGTGGCCACTCCACAG
AAGGCTTGTGATTCTCCAAGCAGATATGAAGATTATTCAGAGCTGGGAGAGCTCCCTCCACGTT
CCCCTTTAGAACCAGTGTGTGAAGATGGACCATTTGGTCCAGTACAAGAGGAGAAGAAGAAAAC
GTCTCGTGAGCTTAGAGAGCTGTGGAAAAAGGCCATCTTGCAGCAGATCCTGCTGCTGAGGATG
GAGAAGGAGAACCAGAAGCTACAAGCCTCTGAGAATGATTTGCTGAACAAACGCCTGAAGCTTG
ATTATGAGGAAATCACTCCTTGTCTTAAAGAAGTAACTACAGTGTGGGAAAAGATGCTTAGCAC
TCCAGGAAGATCCAAAATTAAGTTTGATATGGAAAAAGTGCACTCAGCTGTTGGGCAAGGTGTG
CCACGTCATCACCGGGGTGAGATCTGGAAGTTTCTAGCTGAGCAGTTCCACCTTAAACATCCAT
TTCCCAGTAAACAGCAGCCAAAGGATGTGCCCTACAAAGAGCTCTTGAAGAAGCTGACCTCCCA
GCAGCACGCCATCCTCATTGACCTCGGGCGAACCTTTCCAACACATCCATACTTCTCTGCCCAG
CTTGGAGCAGGTCAGCTGTCACTTTACAACATTCTGAAGGCCTACTCACTTCTGGACCAGGAAG
TTGGATACTGTCAAGGTCTCAGCTTCGTGGCAGGCATTTTGCTCCTTCATATGAGTGAGGAAGA
AGCATTCAAGATGCTCAAGTTCCTGATGTTTGACATGGGGCTGCGGAAACAGTATCGGCCAGAC
ATGATTATTTTACAGATCCAGATGTACCAGCTGTCACGGCTCCTCCATGATTACCACAGAGACC
TCTACAACCACCTGGAAGAGTATGAGATCGGCCCCAGCCTCTACGCAGCTCCCTGGTTTCTCAC
CGTGTTCGCCTCACAGTTCCCACTTGGCTTTGTAGCCAGAGTCTTTGATATGATCTTCCTTCAG
GGATCAGAGGTCATATTTAAAGTAGCTTTAAGTCTTTTGGGGAGCCATAAACCCTTGATTCTGC
AGCATGAGAACCTGGAAACCATAGTGGACTTCATAAAGAACACACTCCCCAACCTAGGCTTGGT
GCAGATGGAGAAGACCATCAGTCAGGTGTTTGAGATGGACATCGCCAAACAGCTACAAGCCTAT
GAGGTTGAGTACCATGTGCTCCAAGAAGAACTTATTGATTCCTCTCCTCTCAGTGACAACCAAA
GAATGGATAAATTGGAGAAAACCAATAGCAGCTTGCGCAAACAGAACCTTGACCTCCTGGAACA
ATTGCAGGTGGCAAATGCTAGGATCCAAAGCCTCGAAGTCACGGTGGAGAAGCTTCTTACCAGC
GAGAGTAAGCTGAAACAGGCTGTGCTGACCCTGGAGATGGAGCGCTCCGCCCTGCTGCAGATGG
TGGAGGAGCTACGGAGGCAAATGGCCCAGCCCAGCACTGCAGAGCCGGACTGCACCCGGCTGGA
ACCTACAGGTGACTGACAGCTGCCAGGAGAGACTGCGCGTGCACCACTTACACTGTCCGGGCCT
TAATGGAGAGAGGGAAGCTGGAAGCAGAGAAGAGAGAGCTTCTCAGGGAGGAAACTGGCTGACC
AGCCTGCAGATTCTTTTGAGCTCAGAATTTGGAATTGGAGGACAAAAGTCTCAGAGTTATTGTT
GTTTTTGGTTCTAATTCGTCCCCTTTCCAGTCCTGGTTGTTGTAGCTTTAGATGGTGTGGGCGT
GAATAAATTACATGTATGGTTCCTCCTCCTTCAGGGACACATGGTGTGAAAAGAGCATTCATGA
CACCAGGGTTTCAGAAGCAAGATGGGCTTGGAATAGTTCCTCAGGCAAAAATGTGACCATGCCC
TTGGTGTCACCATGAGGTGCGGTGGGCCCTTGTCACCTGAGGTGACCCTGGGAAAGGATGCAGG
GGGTTTATTTAAATCGGACGCATTGGTCGTTCCTGACTCCACAGTCACTCCCATTGGTTCTGAA
GAAGCTCATCTTTTACAAACACAGTGTTTGCTATGTTTTTGCTTACCCTTTGAAGTCACAGTAG
TAAATGTTTCATAAGACATCAGTTTTTTGGTCCCCTGTTATTGCTAGTGTGTAACCTGCAGCTC
TGGGGTCTGGCATATTTATTTCTTTGTGATTGTTTCGTATCCACACTATAGGGCCACATATTTT
TTTTTGACTGCCGAATGATGTATCACAGCCTTGTCTTGAGTCTTGACCTCTCAGAAATCTGATT
CCTCATAGAAGGAACAAAACATATCGAGATTTCCAGGGGCTCCTAAGATTCTAAAACATTGCAA
AAGAAACCAGGCTGAAATTGCAGTCAGATGTGTGGCAGCTGACAGCTTTTCAGAGGTAGGAAGT
ACGTTTTGAAAAGCACTCAAACACGTGCACTCCTTCCTTGGAATGGTGAGGACCCTGTGCCTTT
AAGCGGAGTGCAGCTCACAGGTGCCCTGCTTCCAGCTGGTCCTGTGTGGAGCATCATCCGTGTG
TACAGCAAGCTTTTCTATTTTTAACATACAAACAGAGGCTTAGGGAAGAACCACCAGCACAGGG
GCCTCCTGCATATTTGAATTGGTCCTACCTTGCACTCTACTGGCCCTCTGTTCATGGAGGTCCG
TTGCAACTCTCTTGGTAGGAAAAGAGCCTTGTAAGCCTGGGGTGTAAGGAGAGATCATCCACCA
TTGGGGTCATATGGGATCTCCTAGCCCTCTCAAAGGGACACCAAATGGCCAGGAGGGATAGAAG
ACTCCCTCTTGGACTTGGGTCAGAGAGTTCTCTCCATAAACCAACATGATCAGTCCCAGTTGAT
TCGAGAAGGGTTAGTCGAAGGAGGGTTACAATGGACAGCTTCTTTCTACATTGTATTTTATTAT
TTGAATGTTTTAATGTTGAATTTTGGACATGTTATTAATGTTCAAAAACACTGACTCTGCAGTA
AGAAACAAGCAATAAAACATAATTCACACCCCTG

hide sequence

RefSeq Acc Id:

XM_006251006 ⟹ XP_006251068

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	44,289,241 - 44,413,553 (-)	NCBI
mRatBN7.2	14	43,936,820 - 44,061,195 (-)	NCBI
Rnor_6.0	14	45,598,753 - 45,723,022 (-)	NCBI
Rnor_5.0	14	45,404,208 - 45,603,325 (-)	NCBI

Sequence:

show sequence

GCGCCCCGAGCCCGCCCCCGGCCGTCGGCAGGCCCACGGGCCGGCGCGTGTGAGTGGGAGCGGC
GGGCGAGGAGCCGCCGCCGGGCCTGCGATGTCACCATTGTTCAGCTGGGTGGCCAAGGTGCCTG
AGATCATTAGCTCCATCCGGCAGGCAGGGAAGATTGCCCGCCAGGAAGAGCTGCGCTGCCCCTC
GGAGTTCGATGACACCTTCGCCAAAAAGTTTGAGGTGCTCTTCTGTGGCCGGGTCACTGTGGCC
CACAAGAAGGCACCACCTGCACTGATCGACGAGTGTATCGAGAAGTTCAACCATGTGAGCTGTG
GCCGCAGAATAGACTGGGATGCGCCCACGGGGCAACCATCAGCGCCTGGGGCCCGGCCCATGCG
CAAATCCTTCTCACAGCCTGGACTGCGCTCGCTGGCCTTCAGGAAGGAGTTCCAGGATGCTAGC
CTCCGCAGTAGCACCTTTAGCTCCTTCGATAACGACATCGAAAATCACCTAATCGGCGGGCACA
ATGTAGTTCAGCCCACAGACATGGAGGAGAACCGAACTATGCTCTTCACGATTGGCCAATCTGA
AGTTTACCTCATCAGTCCTGACACCAAAAAGATTGCATTGGAGAAAAATTTTAAGGAGATATCC
TTTTGCTCTCAGGGCATCAGGCACGTGGACCACTTTGGATTTATCTGCCGAGAGTGCTCAGGTG
GCGGTGGCGCCGGCTTTCATTTTGTCTGTTACGTGTTCCAGTGCACAAATGAAGCTCTGGTTGA
CGAGATCATGATGACTCTGAAGCAGGCTTTCACGGTAGCTGCAGTGCAGCAGACTGCTAAGGCA
CCAGCCCAGCTGTGTGAGGGCTGCCCCTTGCAGGGCCTACACAAGCTCTGCGAGAGGATAGAGG
GAATGAATTCATCTAAAACCAAATTAGAACTCCAGAAGCACCTGACCACACTGACCAATCAGGA
GCAGGCAATGATATTTGAGGAAGTTCAGAAATTGAGACCAAGAAACGAGCAGCGAGAGAATGAA
TTAATTATTTCTTTTCTGAGGTGTTTATACGAAGAGAAACAAAAGGAACACAGCCATACTGGGG
AGCCAAAGCAGACACTGCAGGTGGCAGCAGAGAATATTGGGAGTGAACTACCACCCAGTGCTAG
CCGGTTCAGGTTAGATTCACTGAAGAACAGAGCAAAGAGGTCCTTAACAGAGTCCTTAGAGAGC
ATTCTGTCCCGGGGCAATAAAGCCAGGGGCCTTCAGGACCATTCCGCCAGTGTGGATCTGGACA
GCTCCACTTCTAGTACTCTAAGTAACACCAGCAAAGAGCTGTCCATGGGTGACAAGGAGGCCTT
GCCCATCTCTGAAAGCTCCTTCAAACTCCTTGGCTCCTCAGATGACCTATCCAGTGACTCAGAG
AGCCACATTGCAGAAGAGTCTGCTCTGTTGTCACCCCAGCAGGCATTCAGAAGGAGAGCCAACA
CCCTGAGTCATTTCCCAGTTGAGTGCCCTGCACCTCCAGAACCTGCCCAGACCTCTCCAGGGGT
GTCTCAAAGAAAACTCATGCGGTATCACTCCGTGAGCACAGAGACGCCTCATGAACGCAATGTG
GACCATCTTCCTGGGGGTGAGTCTCGGTGCTGCCCAGGGCAGCCTTCAGATCCGCCTCCTCTTC
CCCCTCGTCTTAACCCTTCCGCCTCCTCACCAAACTTTTTTAAGTACCTAAAACACAATTCCAG
TGGAGAACAGAGTGGAAATGCTGTGCCAAAAAGTGTCTCCTACCGTAATGCCCTGCGGAAAAAA
CTCCATTCTTCCTCTTCTGTGCCAAATTTTCTAAAATTTCTGGCTCCTGTAGATGAAAATAACA
CCTGTGACTTTAAGAACACAAACAGGGACTTTGAATCCAAAGCAAACCACCTGGGTGACACAGA
TGGGACCCCAGTGAAGGCCCGGCGGCATTCATGGAGACAGCAGATATTCCTCCGAGTGGCCACT
CCACAGAAGGCTTGTGATTCTCCAAGCAGATATGAAGATTATTCAGAGCTGGGAGAGCTCCCTC
CACGTTCCCCTTTAGAACCAGTGTGTGAAGATGGACCATTTGGTCCAGTACAAGAGGAGAAGAA
GAAAACGTCTCGTGAGCTTAGAGAGCTGTGGAAAAAGGCCATCTTGCAGCAGATCCTGCTGCTG
AGGATGGAGAAGGAGAACCAGAAGCTACAAGCCTCTGAGAATGATTTGCTGAACAAACGCCTGA
AGCTTGATTATGAGGAAATCACTCCTTGTCTTAAAGAAGTAACTACAGTGTGGGAAAAGATGCT
TAGCACTCCAGGAAGATCCAAAATTAAGTTTGATATGGAAAAAGTGCACTCAGCTGTTGGGCAA
GGTGTGCCACGTCATCACCGGGGTGAGATCTGGAAGTTTCTAGCTGAGCAGTTCCACCTTAAAC
ATCCATTTCCCAGTAAACAGCAGCCAAAGGATGTGCCCTACAAAGAGCTCTTGAAGAAGCTGAC
CTCCCAGCAGCACGCCATCCTCATTGACCTCGGGCGAACCTTTCCAACACATCCATACTTCTCT
GCCCAGCTTGGAGCAGGTCAGCTGTCACTTTACAACATTCTGAAGGCCTACTCACTTCTGGACC
AGGAAGTTGGATACTGTCAAGGTCTCAGCTTCGTGGCAGGCATTTTGCTCCTTCATATGAGTGA
GGAAGAAGCATTCAAGATGCTCAAGTTCCTGATGTTTGACATGGGGCTGCGGAAACAGTATCGG
CCAGACATGATTATTTTACAGATCCAGATGTACCAGCTGTCACGGCTCCTCCATGATTACCACA
GAGACCTCTACAACCACCTGGAAGAGTATGAGATCGGCCCCAGCCTCTACGCAGCTCCCTGGTT
TCTCACCGTGTTCGCCTCACAGTTCCCACTTGGCTTTGTAGCCAGAGTCTTTGATATGATCTTC
CTTCAGGGATCAGAGGTCATATTTAAAGTAGCTTTAAGTCTTTTGGGGAGCCATAAACCCTTGA
TTCTGCAGCATGAGAACCTGGAAACCATAGTGGACTTCATAAAGAACACACTCCCCAACCTAGG
CTTGGTGCAGATGGAGAAGACCATCAGTCAGGTGTTTGAGATGGACATCGCCAAACAGCTACAA
GCCTATGAGGTTGAGTACCATGTGCTCCAAGAAGAACTTATTGATTCCTCTCCTCTCAGTGACA
ACCAAAGAATGGATAAATTGGAGAAAACCAATAGCAGCTTGCGCAAACAGAACCTTGACCTCCT
GGAACAATTGCAGGTGGCAAATGCTAGGATCCAAAGCCTCGAAGTCACGGTGGAGAAGCTTCTT
ACCAGCGAGAGTAAGCTGAAACAGGCTGTGCTGACCCTGGAGATGGAGCGCTCCGCCCTGCTGC
AGATGGTGGAGGAGCTACGGAGGCAAATGGCCCAGCCCAGCACTGCAGAGCCGGACTGCACCCG
GCTGGAACCTACAGGTGACTGACAGCTGCCAGGAGAGACTGCGCGTGCACCACTTACACTGTCC
GGGCCTTAATGGAGAGAGGGAAGCTGGAAGCAGAGAAGAGAGAGCTTCTCAGGGAGGAAACTGG
CTGACCAGCCTGCAGATTCTTTTGAGCTCAGAATTTGGAATTGGAGGACAAAAGTCTCAGAGTT
ATTGTTGTTTTTGGTTCTAATTCGTCCCCTTTCCAGTCCTGGTTGTTGTAGCTTTAGATGGTGT
GGGCGTGAATAAATTACATGTATGGTTCCTCCTCCTTCAGGGACACATGGTGTGAAAAGAGCAT
TCATGACACCAGGGTTTCAGAAGCAAGATGGGCTTGGAATAGTTCCTCAGGCAAAAATGTGACC
ATGCCCTTGGTGTCACCATGAGGTGCGGTGGGCCCTTGTCACCTGAGGTGACCCTGGGAAAGGA
TGCAGGGGGTTTATTTAAATCGGACGCATTGGTCGTTCCTGACTCCACAGTCACTCCCATTGGT
TCTGAAGAAGCTCATCTTTTACAAACACAGTGTTTGCTATGTTTTTGCTTACCCTTTGAAGTCA
CAGTAGTAAATGTTTCATAAGACATCAGTTTTTTGGTCCCCTGTTATTGCTAGTGTGTAACCTG
CAGCTCTGGGGTCTGGCATATTTATTTCTTTGTGATTGTTTCGTATCCACACTATAGGGCCACA
TATTTTTTTTTGACTGCCGAATGATGTATCACAGCCTTGTCTTGAGTCTTGACCTCTCAGAAAT
CTGATTCCTCATAGAAGGAACAAAACATATCGAGATTTCCAGGGGCTCCTAAGATTCTAAAACA
TTGCAAAAGAAACCAGGCTGAAATTGCAGTCAGATGTGTGGCAGCTGACAGCTTTTCAGAGGTA
GGAAGTACGTTTTGAAAAGCACTCAAACACGTGCACTCCTTCCTTGGAATGGTGAGGACCCTGT
GCCTTTAAGCGGAGTGCAGCTCACAGGTGCCCTGCTTCCAGCTGGTCCTGTGTGGAGCATCATC
CGTGTGTACAGCAAGCTTTTCTATTTTTAACATACAAACAGAGGCTTAGGGAAGAACCACCAGC
ACAGGGGCCTCCTGCATATTTGAATTGGTCCTACCTTGCACTCTACTGGCCCTCTGTTCATGGA
GGTCCGTTGCAACTCTCTTGGTAGGAAAAGAGCCTTGTAAGCCTGGGGTGTAAGGAGAGATCAT
CCACCATTGGGGTCATATGGGATCTCCTAGCCCTCTCAAAGGGACACCAAATGGCCAGGAGGGA
TAGAAGACTCCCTCTTGGACTTGGGTCAGAGAGTTCTCTCCATAAACCAACATGATCAGTCCCA
GTTGATTCGAGAAGGGTTAGTCGAAGGAGGGTTACAATGGACAGCTTCTTTCTACATTGTATTT
TATTATTTGAATGTTTTAATGTTGAATTTTGGACATGTTATTAATGTTCAAAAACACTGACTCT
GCAGTAAGAAACAAGCAATAAAACATAATTCACACCCCTG

hide sequence

RefSeq Acc Id:

XM_006251007 ⟹ XP_006251069

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	44,289,241 - 44,386,370 (-)	NCBI
mRatBN7.2	14	43,936,820 - 44,032,762 (-)	NCBI
Rnor_6.0	14	45,598,753 - 45,695,837 (-)	NCBI
Rnor_5.0	14	45,404,208 - 45,603,325 (-)	NCBI

Sequence:

show sequence

AAAGCAAAGCTATTTGTGAGAAGCTTTCTGTGTTTTCTGTGAAAGTGGGCAGGAGCTCTCTGTT
GTTTTATCCATCCACACTAGGAAATACAGGATCAAGTCATGACACGTTAGTTGCCATTGAAGAA
AACAACGGTGCCATAATTTCAGTGCCTGAGATCATTAGCTCCATCCGGCAGGCAGGGAAGATTG
CCCGCCAGGAAGAGCTGCGCTGCCCCTCGGAGTTCGATGACACCTTCGCCAAAAAGTTTGAGGT
GCTCTTCTGTGGCCGGGTCACTGTGGCCCACAAGAAGGCACCACCTGCACTGATCGACGAGTGT
ATCGAGAAGTTCAACCATGTGAGCTGTGGCCGCAGAATAGACTGGGATGCGCCCACGGGGCAAC
CATCAGCGCCTGGGGCCCGGCCCATGCGCAAATCCTTCTCACAGCCTGGACTGCGCTCGCTGGC
CTTCAGGAAGGAGTTCCAGGATGCTAGCCTCCGCAGTAGCACCTTTAGCTCCTTCGATAACGAC
ATCGAAAATCACCTAATCGGCGGGCACAATGTAGTTCAGCCCACAGACATGGAGGAGAACCGAA
CTATGCTCTTCACGATTGGCCAATCTGAAGTTTACCTCATCAGTCCTGACACCAAAAAGATTGC
ATTGGAGAAAAATTTTAAGGAGATATCCTTTTGCTCTCAGGGCATCAGGCACGTGGACCACTTT
GGATTTATCTGCCGAGAGTGCTCAGGTGGCGGTGGCGCCGGCTTTCATTTTGTCTGTTACGTGT
TCCAGTGCACAAATGAAGCTCTGGTTGACGAGATCATGATGACTCTGAAGCAGGCTTTCACGGT
AGCTGCAGTGCAGCAGACTGCTAAGGCACCAGCCCAGCTGTGTGAGGGCTGCCCCTTGCAGGGC
CTACACAAGCTCTGCGAGAGGATAGAGGGAATGAATTCATCTAAAACCAAATTAGAACTCCAGA
AGCACCTGACCACACTGACCAATCAGGAGCAGGCAATGATATTTGAGGAAGTTCAGAAATTGAG
ACCAAGAAACGAGCAGCGAGAGAATGAATTAATTATTTCTTTTCTGAGGTGTTTATACGAAGAG
AAACAAAAGGAACACAGCCATACTGGGGAGCCAAAGCAGACACTGCAGGTGGCAGCAGAGAATA
TTGGGAGTGAACTACCACCCAGTGCTAGCCGGTTCAGGTTAGATTCACTGAAGAACAGAGCAAA
GAGGTCCTTAACAGAGTCCTTAGAGAGCATTCTGTCCCGGGGCAATAAAGCCAGGGGCCTTCAG
GACCATTCCGCCAGTGTGGATCTGGACAGCTCCACTTCTAGTACTCTAAGTAACACCAGCAAAG
AGCTGTCCATGGGTGACAAGGAGGCCTTGCCCATCTCTGAAAGCTCCTTCAAACTCCTTGGCTC
CTCAGATGACCTATCCAGTGACTCAGAGAGCCACATTGCAGAAGAGTCTGCTCTGTTGTCACCC
CAGCAGGCATTCAGAAGGAGAGCCAACACCCTGAGTCATTTCCCAGTTGAGTGCCCTGCACCTC
CAGAACCTGCCCAGACCTCTCCAGGGGTGTCTCAAAGAAAACTCATGCGGTATCACTCCGTGAG
CACAGAGACGCCTCATGAACGCAATGTGGACCATCTTCCTGGGGGTGAGTCTCGGTGCTGCCCA
GGGCAGCCTTCAGATCCGCCTCCTCTTCCCCCTCGTCTTAACCCTTCCGCCTCCTCACCAAACT
TTTTTAAGTACCTAAAACACAATTCCAGTGGAGAACAGAGTGGAAATGCTGTGCCAAAAAGTGT
CTCCTACCGTAATGCCCTGCGGAAAAAACTCCATTCTTCCTCTTCTGTGCCAAATTTTCTAAAA
TTTCTGGCTCCTGTAGATGAAAATAACACCTGTGACTTTAAGAACACAAACAGGGACTTTGAAT
CCAAAGCAAACCACCTGGGTGACACAGATGGGACCCCAGTGAAGGCCCGGCGGCATTCATGGAG
ACAGCAGATATTCCTCCGAGTGGCCACTCCACAGAAGGCTTGTGATTCTCCAAGCAGATATGAA
GATTATTCAGAGCTGGGAGAGCTCCCTCCACGTTCCCCTTTAGAACCAGTGTGTGAAGATGGAC
CATTTGGTCCAGTACAAGAGGAGAAGAAGAAAACGTCTCGTGAGCTTAGAGAGCTGTGGAAAAA
GGCCATCTTGCAGCAGATCCTGCTGCTGAGGATGGAGAAGGAGAACCAGAAGCTACAAGCCTCT
GAGAATGATTTGCTGAACAAACGCCTGAAGCTTGATTATGAGGAAATCACTCCTTGTCTTAAAG
AAGTAACTACAGTGTGGGAAAAGATGCTTAGCACTCCAGGAAGATCCAAAATTAAGTTTGATAT
GGAAAAAGTGCACTCAGCTGTTGGGCAAGGTGTGCCACGTCATCACCGGGGTGAGATCTGGAAG
TTTCTAGCTGAGCAGTTCCACCTTAAACATCCATTTCCCAGTAAACAGCAGCCAAAGGATGTGC
CCTACAAAGAGCTCTTGAAGAAGCTGACCTCCCAGCAGCACGCCATCCTCATTGACCTCGGGCG
AACCTTTCCAACACATCCATACTTCTCTGCCCAGCTTGGAGCAGGTCAGCTGTCACTTTACAAC
ATTCTGAAGGCCTACTCACTTCTGGACCAGGAAGTTGGATACTGTCAAGGTCTCAGCTTCGTGG
CAGGCATTTTGCTCCTTCATATGAGTGAGGAAGAAGCATTCAAGATGCTCAAGTTCCTGATGTT
TGACATGGGGCTGCGGAAACAGTATCGGCCAGACATGATTATTTTACAGATCCAGATGTACCAG
CTGTCACGGCTCCTCCATGATTACCACAGAGACCTCTACAACCACCTGGAAGAGTATGAGATCG
GCCCCAGCCTCTACGCAGCTCCCTGGTTTCTCACCGTGTTCGCCTCACAGTTCCCACTTGGCTT
TGTAGCCAGAGTCTTTGATATGATCTTCCTTCAGGGATCAGAGGTCATATTTAAAGTAGCTTTA
AGTCTTTTGGGGAGCCATAAACCCTTGATTCTGCAGCATGAGAACCTGGAAACCATAGTGGACT
TCATAAAGAACACACTCCCCAACCTAGGCTTGGTGCAGATGGAGAAGACCATCAGTCAGGTGTT
TGAGATGGACATCGCCAAACAGCTACAAGCCTATGAGGTTGAGTACCATGTGCTCCAAGAAGAA
CTTATTGATTCCTCTCCTCTCAGTGACAACCAAAGAATGGATAAATTGGAGAAAACCAATAGCA
GCTTGCGCAAACAGAACCTTGACCTCCTGGAACAATTGCAGGTGGCAAATGCTAGGATCCAAAG
CCTCGAAGTCACGGTGGAGAAGCTTCTTACCAGCGAGAGTAAGCTGAAACAGGCTGTGCTGACC
CTGGAGATGGAGCGCTCCGCCCTGCTGCAGATGGTGGAGGAGCTACGGAGGCAAATGGCCCAGC
CCAGCACTGCAGAGCCGGACTGCACCCGGCTGGAACCTACAGGTGACTGACAGCTGCCAGGAGA
GACTGCGCGTGCACCACTTACACTGTCCGGGCCTTAATGGAGAGAGGGAAGCTGGAAGCAGAGA
AGAGAGAGCTTCTCAGGGAGGAAACTGGCTGACCAGCCTGCAGATTCTTTTGAGCTCAGAATTT
GGAATTGGAGGACAAAAGTCTCAGAGTTATTGTTGTTTTTGGTTCTAATTCGTCCCCTTTCCAG
TCCTGGTTGTTGTAGCTTTAGATGGTGTGGGCGTGAATAAATTACATGTATGGTTCCTCCTCCT
TCAGGGACACATGGTGTGAAAAGAGCATTCATGACACCAGGGTTTCAGAAGCAAGATGGGCTTG
GAATAGTTCCTCAGGCAAAAATGTGACCATGCCCTTGGTGTCACCATGAGGTGCGGTGGGCCCT
TGTCACCTGAGGTGACCCTGGGAAAGGATGCAGGGGGTTTATTTAAATCGGACGCATTGGTCGT
TCCTGACTCCACAGTCACTCCCATTGGTTCTGAAGAAGCTCATCTTTTACAAACACAGTGTTTG
CTATGTTTTTGCTTACCCTTTGAAGTCACAGTAGTAAATGTTTCATAAGACATCAGTTTTTTGG
TCCCCTGTTATTGCTAGTGTGTAACCTGCAGCTCTGGGGTCTGGCATATTTATTTCTTTGTGAT
TGTTTCGTATCCACACTATAGGGCCACATATTTTTTTTTGACTGCCGAATGATGTATCACAGCC
TTGTCTTGAGTCTTGACCTCTCAGAAATCTGATTCCTCATAGAAGGAACAAAACATATCGAGAT
TTCCAGGGGCTCCTAAGATTCTAAAACATTGCAAAAGAAACCAGGCTGAAATTGCAGTCAGATG
TGTGGCAGCTGACAGCTTTTCAGAGGTAGGAAGTACGTTTTGAAAAGCACTCAAACACGTGCAC
TCCTTCCTTGGAATGGTGAGGACCCTGTGCCTTTAAGCGGAGTGCAGCTCACAGGTGCCCTGCT
TCCAGCTGGTCCTGTGTGGAGCATCATCCGTGTGTACAGCAAGCTTTTCTATTTTTAACATACA
AACAGAGGCTTAGGGAAGAACCACCAGCACAGGGGCCTCCTGCATATTTGAATTGGTCCTACCT
TGCACTCTACTGGCCCTCTGTTCATGGAGGTCCGTTGCAACTCTCTTGGTAGGAAAAGAGCCTT
GTAAGCCTGGGGTGTAAGGAGAGATCATCCACCATTGGGGTCATATGGGATCTCCTAGCCCTCT
CAAAGGGACACCAAATGGCCAGGAGGGATAGAAGACTCCCTCTTGGACTTGGGTCAGAGAGTTC
TCTCCATAAACCAACATGATCAGTCCCAGTTGATTCGAGAAGGGTTAGTCGAAGGAGGGTTACA
ATGGACAGCTTCTTTCTACATTGTATTTTATTATTTGAATGTTTTAATGTTGAATTTTGGACAT
GTTATTAATGTTCAAAAACACTGACTCTGCAGTAAGAAACAAGCAATAAAACATAATTCACACC
CCTG

hide sequence

RefSeq Acc Id:

XM_063273342 ⟹ XP_063129412

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	44,289,241 - 44,413,591 (-)	NCBI

RefSeq Acc Id:

XM_063273343 ⟹ XP_063129413

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	44,289,241 - 44,413,654 (-)	NCBI

RefSeq Acc Id:

XM_063273344 ⟹ XP_063129414

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	44,319,924 - 44,489,246 (-)	NCBI

RefSeq Acc Id:

XM_341215 ⟹ XP_341216

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	44,289,241 - 44,489,246 (-)	NCBI
mRatBN7.2	14	43,936,820 - 44,135,127 (-)	NCBI
Rnor_6.0	14	45,598,753 - 45,797,650 (-)	NCBI
Rnor_5.0	14	45,404,208 - 45,603,325 (-)	NCBI
RGSC_v3.4	14	46,594,874 - 46,781,813 (-)	RGD

Sequence:

show sequence

GCGGAGCCTGTTGCTGCAAGCCACCTCGTACCCGCCGTCTCTTCAACCCGCAAGAGAAGCAGAT
ACTGTGGAGCGGTCCCCATCCCAACAGCGTGGGGCCGCAAGAGCGCAGCCAGCTGAGGACCATA
GACGCCCCGCCCGCCCAGGCCATCTTCTGGGTGCCCCGGAGCACCTGAGCGCCCCAGATCAGCC
CCGAGTTCTGAGCGCGCCACCACACTGGATGCTGCCCTCAGAAGCATGTGAAATAGATTACTTC
ATTTATAGTAGGAAAATAGTAGCAAGCTTTCTTGGCTTTCCAGACCTCTCCCAAGATGGAGGCA
ATCACATTCACAGCGAGGAAGCATCCGTTCCCTAACGAGGTTTCGGTGGACTTCGGCTTGCAGC
TAGTGGGCTCCTTACCCGTGCATTCTCTCACTACAATGCCCATGCTGCCGTGGGTGGTAGCCGA
GGTACGAAGACTCAGTGGCCAGTGCTCCAAAAAGGAGCCTGGGATGAAGCAAGTCCGCCTTTGG
GTTTCGCCCTCCGGACTACGGTGCGAACCTGACCTGAGGAAAAGTCAACCGTGGGACCCCCTGA
TCTGTTCCAGCATCTTTGAGTGCAAGCCTCAGCGTGTTCACAAACTGATTCACAACAGTCAGGA
CCCGAGCTACTTCGCTTGTCTCATTAAGGAGGACGCTGCCCACCAGCAGAGCCTCTGCTATGTA
TTTAAAGCAGATGATCAAACAAAAGTGCCTGAGATCATTAGCTCCATCCGGCAGGCAGGGAAGA
TTGCCCGCCAGGAAGAGCTGCGCTGCCCCTCGGAGTTCGATGACACCTTCGCCAAAAAGTTTGA
GGTGCTCTTCTGTGGCCGGGTCACTGTGGCCCACAAGAAGGCACCACCTGCACTGATCGACGAG
TGTATCGAGAAGTTCAACCATGTGAGCTGTGGCCGCAGAATAGACTGGGATGCGCCCACGGGGC
AACCATCAGCGCCTGGGGCCCGGCCCATGCGCAAATCCTTCTCACAGCCTGGACTGCGCTCGCT
GGCCTTCAGGAAGGAGTTCCAGGATGCTAGCCTCCGCAGTAGCACCTTTAGCTCCTTCGATAAC
GACATCGAAAATCACCTAATCGGCGGGCACAATGTAGTTCAGCCCACAGACATGGAGGAGAACC
GAACTATGCTCTTCACGATTGGCCAATCTGAAGTTTACCTCATCAGTCCTGACACCAAAAAGAT
TGCATTGGAGAAAAATTTTAAGGAGATATCCTTTTGCTCTCAGGGCATCAGGCACGTGGACCAC
TTTGGATTTATCTGCCGAGAGTGCTCAGGTGGCGGTGGCGCCGGCTTTCATTTTGTCTGTTACG
TGTTCCAGTGCACAAATGAAGCTCTGGTTGACGAGATCATGATGACTCTGAAGCAGGCTTTCAC
GGTAGCTGCAGTGCAGCAGACTGCTAAGGCACCAGCCCAGCTGTGTGAGGGCTGCCCCTTGCAG
GGCCTACACAAGCTCTGCGAGAGGATAGAGGGAATGAATTCATCTAAAACCAAATTAGAACTCC
AGAAGCACCTGACCACACTGACCAATCAGGAGCAGGCAATGATATTTGAGGAAGTTCAGAAATT
GAGACCAAGAAACGAGCAGCGAGAGAATGAATTAATTATTTCTTTTCTGAGGTGTTTATACGAA
GAGAAACAAAAGGAACACAGCCATACTGGGGAGCCAAAGCAGACACTGCAGGTGGCAGCAGAGA
ATATTGGGAGTGAACTACCACCCAGTGCTAGCCGGTTCAGGTTAGATTCACTGAAGAACAGAGC
AAAGAGGTCCTTAACAGAGTCCTTAGAGAGCATTCTGTCCCGGGGCAATAAAGCCAGGGGCCTT
CAGGACCATTCCGCCAGTGTGGATCTGGACAGCTCCACTTCTAGTACTCTAAGTAACACCAGCA
AAGAGCTGTCCATGGGTGACAAGGAGGCCTTGCCCATCTCTGAAAGCTCCTTCAAACTCCTTGG
CTCCTCAGATGACCTATCCAGTGACTCAGAGAGCCACATTGCAGAAGAGTCTGCTCTGTTGTCA
CCCCAGCAGGCATTCAGAAGGAGAGCCAACACCCTGAGTCATTTCCCAGTTGAGTGCCCTGCAC
CTCCAGAACCTGCCCAGACCTCTCCAGGGGTGTCTCAAAGAAAACTCATGCGGTATCACTCCGT
GAGCACAGAGACGCCTCATGAACGCAAGGACTTTGAATCCAAAGCAAACCACCTGGGTGACACA
GATGGGACCCCAGTGAAGGCCCGGCGGCATTCATGGAGACAGCAGATATTCCTCCGAGTGGCCA
CTCCACAGAAGGCTTGTGATTCTCCAAGCAGATATGAAGATTATTCAGAGCTGGGAGAGCTCCC
TCCACGTTCCCCTTTAGAACCAGTGTGTGAAGATGGACCATTTGGTCCAGTACAAGAGGAGAAG
AAGAAAACGTCTCGTGAGCTTAGAGAGCTGTGGAAAAAGGCCATCTTGCAGCAGATCCTGCTGC
TGAGGATGGAGAAGGAGAACCAGAAGCTACAAGCCTCTGAGAATGATTTGCTGAACAAACGCCT
GAAGCTTGATTATGAGGAAATCACTCCTTGTCTTAAAGAAGTAACTACAGTGTGGGAAAAGATG
CTTAGCACTCCAGGAAGATCCAAAATTAAGTTTGATATGGAAAAAGTGCACTCAGCTGTTGGGC
AAGGTGTGCCACGTCATCACCGGGGTGAGATCTGGAAGTTTCTAGCTGAGCAGTTCCACCTTAA
ACATCCATTTCCCAGTAAACAGCAGCCAAAGGATGTGCCCTACAAAGAGCTCTTGAAGAAGCTG
ACCTCCCAGCAGCACGCCATCCTCATTGACCTCGGGCGAACCTTTCCAACACATCCATACTTCT
CTGCCCAGCTTGGAGCAGGTCAGCTGTCACTTTACAACATTCTGAAGGCCTACTCACTTCTGGA
CCAGGAAGTTGGATACTGTCAAGGTCTCAGCTTCGTGGCAGGCATTTTGCTCCTTCATATGAGT
GAGGAAGAAGCATTCAAGATGCTCAAGTTCCTGATGTTTGACATGGGGCTGCGGAAACAGTATC
GGCCAGACATGATTATTTTACAGATCCAGATGTACCAGCTGTCACGGCTCCTCCATGATTACCA
CAGAGACCTCTACAACCACCTGGAAGAGTATGAGATCGGCCCCAGCCTCTACGCAGCTCCCTGG
TTTCTCACCGTGTTCGCCTCACAGTTCCCACTTGGCTTTGTAGCCAGAGTCTTTGATATGATCT
TCCTTCAGGGATCAGAGGTCATATTTAAAGTAGCTTTAAGTCTTTTGGGGAGCCATAAACCCTT
GATTCTGCAGCATGAGAACCTGGAAACCATAGTGGACTTCATAAAGAACACACTCCCCAACCTA
GGCTTGGTGCAGATGGAGAAGACCATCAGTCAGGTGTTTGAGATGGACATCGCCAAACAGCTAC
AAGCCTATGAGGTTGAGTACCATGTGCTCCAAGAAGAACTTATTGATTCCTCTCCTCTCAGTGA
CAACCAAAGAATGGATAAATTGGAGAAAACCAATAGCAGCTTGCGCAAACAGAACCTTGACCTC
CTGGAACAATTGCAGGTGGCAAATGCTAGGATCCAAAGCCTCGAAGTCACGGTGGAGAAGCTTC
TTACCAGCGAGAGTAAGCTGAAACAGGCTGTGCTGACCCTGGAGATGGAGCGCTCCGCCCTGCT
GCAGATGGTGGAGGAGCTACGGAGGCAAATGGCCCAGCCCAGCACTGCAGAGCCGGACTGCACC
CGGCTGGAACCTACAGGTGACTGACAGCTGCCAGGAGAGACTGCGCGTGCACCACTTACACTGT
CCGGGCCTTAATGGAGAGAGGGAAGCTGGAAGCAGAGAAGAGAGAGCTTCTCAGGGAGGAAACT
GGCTGACCAGCCTGCAGATTCTTTTGAGCTCAGAATTTGGAATTGGAGGACAAAAGTCTCAGAG
TTATTGTTGTTTTTGGTTCTAATTCGTCCCCTTTCCAGTCCTGGTTGTTGTAGCTTTAGATGGT
GTGGGCGTGAATAAATTACATGTATGGTTCCTCCTCCTTCAGGGACACATGGTGTGAAAAGAGC
ATTCATGACACCAGGGTTTCAGAAGCAAGATGGGCTTGGAATAGTTCCTCAGGCAAAAATGTGA
CCATGCCCTTGGTGTCACCATGAGGTGCGGTGGGCCCTTGTCACCTGAGGTGACCCTGGGAAAG
GATGCAGGGGGTTTATTTAAATCGGACGCATTGGTCGTTCCTGACTCCACAGTCACTCCCATTG
GTTCTGAAGAAGCTCATCTTTTACAAACACAGTGTTTGCTATGTTTTTGCTTACCCTTTGAAGT
CACAGTAGTAAATGTTTCATAAGACATCAGTTTTTTGGTCCCCTGTTATTGCTAGTGTGTAACC
TGCAGCTCTGGGGTCTGGCATATTTATTTCTTTGTGATTGTTTCGTATCCACACTATAGGGCCA
CATATTTTTTTTTGACTGCCGAATGATGTATCACAGCCTTGTCTTGAGTCTTGACCTCTCAGAA
ATCTGATTCCTCATAGAAGGAACAAAACATATCGAGATTTCCAGGGGCTCCTAAGATTCTAAAA
CATTGCAAAAGAAACCAGGCTGAAATTGCAGTCAGATGTGTGGCAGCTGACAGCTTTTCAGAGG
TAGGAAGTACGTTTTGAAAAGCACTCAAACACGTGCACTCCTTCCTTGGAATGGTGAGGACCCT
GTGCCTTTAAGCGGAGTGCAGCTCACAGGTGCCCTGCTTCCAGCTGGTCCTGTGTGGAGCATCA
TCCGTGTGTACAGCAAGCTTTTCTATTTTTAACATACAAACAGAGGCTTAGGGAAGAACCACCA
GCACAGGGGCCTCCTGCATATTTGAATTGGTCCTACCTTGCACTCTACTGGCCCTCTGTTCATG
GAGGTCCGTTGCAACTCTCTTGGTAGGAAAAGAGCCTTGTAAGCCTGGGGTGTAAGGAGAGATC
ATCCACCATTGGGGTCATATGGGATCTCCTAGCCCTCTCAAAGGGACACCAAATGGCCAGGAGG
GATAGAAGACTCCCTCTTGGACTTGGGTCAGAGAGTTCTCTCCATAAACCAACATGATCAGTCC
CAGTTGATTCGAGAAGGGTTAGTCGAAGGAGGGTTACAATGGACAGCTTCTTTCTACATTGTAT
TTTATTATTTGAATGTTTTAATGTTGAATTTTGGACATGTTATTAATGTTCAAAAACACTGACT
CTGCAGTAAGAAACAAGCAATAAAACATAATTCACACCCCTG

hide sequence

Protein Sequences


Protein RefSeqs	NP_001414246	(Get FASTA)	NCBI Sequence Viewer
	XP_006251066	(Get FASTA)	NCBI Sequence Viewer
	XP_006251067	(Get FASTA)	NCBI Sequence Viewer
	XP_006251068	(Get FASTA)	NCBI Sequence Viewer
	XP_006251069	(Get FASTA)	NCBI Sequence Viewer
	XP_063129412	(Get FASTA)	NCBI Sequence Viewer
	XP_063129413	(Get FASTA)	NCBI Sequence Viewer
	XP_063129414	(Get FASTA)	NCBI Sequence Viewer
	XP_341216	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000033018.5
	ENSRNOP00000078738.1
	ENSRNOP00000079436.1
	ENSRNOP00000079959.1
	ENSRNOP00000088613.1

RefSeq Acc Id:	XP_341216 ⟸ XM_341215
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AB45 (UniProtKB/TrEMBL), A0A8I5ZLK4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEAITFTARKHPFPNEVSVDFGLQLVGSLPVHSLTTMPMLPWVVAEVRRLSGQCSKKEPGMKQV RLWVSPSGLRCEPDLRKSQPWDPLICSSIFECKPQRVHKLIHNSQDPSYFACLIKEDAAHQQSL CYVFKADDQTKVPEIISSIRQAGKIARQEELRCPSEFDDTFAKKFEVLFCGRVTVAHKKAPPAL IDECIEKFNHVSCGRRIDWDAPTGQPSAPGARPMRKSFSQPGLRSLAFRKEFQDASLRSSTFSS FDNDIENHLIGGHNVVQPTDMEENRTMLFTIGQSEVYLISPDTKKIALEKNFKEISFCSQGIRH VDHFGFICRECSGGGGAGFHFVCYVFQCTNEALVDEIMMTLKQAFTVAAVQQTAKAPAQLCEGC PLQGLHKLCERIEGMNSSKTKLELQKHLTTLTNQEQAMIFEEVQKLRPRNEQRENELIISFLRC LYEEKQKEHSHTGEPKQTLQVAAENIGSELPPSASRFRLDSLKNRAKRSLTESLESILSRGNKA RGLQDHSASVDLDSSTSSTLSNTSKELSMGDKEALPISESSFKLLGSSDDLSSDSESHIAEESA LLSPQQAFRRRANTLSHFPVECPAPPEPAQTSPGVSQRKLMRYHSVSTETPHERKDFESKANHL GDTDGTPVKARRHSWRQQIFLRVATPQKACDSPSRYEDYSELGELPPRSPLEPVCEDGPFGPVQ EEKKKTSRELRELWKKAILQQILLLRMEKENQKLQASENDLLNKRLKLDYEEITPCLKEVTTVW EKMLSTPGRSKIKFDMEKVHSAVGQGVPRHHRGEIWKFLAEQFHLKHPFPSKQQPKDVPYKELL KKLTSQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLL HMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEYEIGPSLYA APWFLTVFASQFPLGFVARVFDMIFLQGSEVIFKVALSLLGSHKPLILQHENLETIVDFIKNTL PNLGLVQMEKTISQVFEMDIAKQLQAYEVEYHVLQEELIDSSPLSDNQRMDKLEKTNSSLRKQN LDLLEQLQVANARIQSLEVTVEKLLTSESKLKQAVLTLEMERSALLQMVEELRRQMAQPSTAEP DCTRLEPTGD hide sequence

RefSeq Acc Id:	XP_006251067 ⟸ XM_006251005
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6G5Y5 (UniProtKB/TrEMBL), A0A8I5ZLK4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEAITFTARKHPFPNEVSVDFGLQLVGSLPVHSLTTMPMLPWVVAEVRRLSGQCSKKEPGMKQV RLWVSPSGLRCEPDLRKSQPWDPLICSSIFECKPQRVHKLIHNSQDPSYFACLIKEDAAHQQSL CYVFKADDQTKVPEIISSIRQAGKIARQEELRCPSEFDDTFAKKFEVLFCGRVTVAHKKAPPAL IDECIEKFNHVSCGRRIDWDAPTGQPSAPGARPMRKSFSQPGLRSLAFRKEFQDASLRSSTFSS FDNDIENHLIGGHNVVQPTDMEENRTMLFTIGQSEVYLISPDTKKIALEKNFKEISFCSQGIRH VDHFGFICRECSGGGGAGFHFVCYVFQCTNEALVDEIMMTLKQAFTVAAVQQTAKAPAQLCEGC PLQGLHKLCERIEGMNSSKTKLELQKHLTTLTNQEQAMIFEEVQKLRPRNEQRENELIISFLRC LYEEKQKEHSHTGEPKQTLQVAAENIGSELPPSASRFRLDSLKNRAKRSLTESLESILSRGNKA RGLQDHSASVDLDSSTSSTLSNTSKELSMGDKEALPISESSFKLLGSSDDLSSDSESHIAEESA LLSPQQAFRRRANTLSHFPVECPAPPEPAQTSPGVSQRKLMRYHSVSTETPHERNVSYRNALRK KLHSSSSVPNFLKFLAPVDENNTCDFKNTNRDFESKANHLGDTDGTPVKARRHSWRQQIFLRVA TPQKACDSPSRYEDYSELGELPPRSPLEPVCEDGPFGPVQEEKKKTSRELRELWKKAILQQILL LRMEKENQKLQASENDLLNKRLKLDYEEITPCLKEVTTVWEKMLSTPGRSKIKFDMEKVHSAVG QGVPRHHRGEIWKFLAEQFHLKHPFPSKQQPKDVPYKELLKKLTSQQHAILIDLGRTFPTHPYF SAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKMLKFLMFDMGLRKQY RPDMIILQIQMYQLSRLLHDYHRDLYNHLEEYEIGPSLYAAPWFLTVFASQFPLGFVARVFDMI FLQGSEVIFKVALSLLGSHKPLILQHENLETIVDFIKNTLPNLGLVQMEKTISQVFEMDIAKQL QAYEVEYHVLQEELIDSSPLSDNQRMDKLEKTNSSLRKQNLDLLEQLQVANARIQSLEVTVEKL LTSESKLKQAVLTLEMERSALLQMVEELRRQMAQPSTAEPDCTRLEPTGD hide sequence

RefSeq Acc Id:	XP_006251066 ⟸ XM_006251004
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZMX5 (UniProtKB/TrEMBL), A0A8I5ZLK4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEAITFTARKHPFPNEVSVDFGLQLVGSLPVHSLTTMPMLPWVVAEVRRLSGQCSKKEPGMKQV RLWVSPSGLRCEPDLRKSQPWDPLICSSIFECKPQRVHKLIHNSQDPSYFACLIKEDAAHQQSL CYVFKADDQTKVPEIISSIRQAGKIARQEELRCPSEFDDTFAKKFEVLFCGRVTVAHKKAPPAL IDECIEKFNHVSCGRRIDWDAPTGQPSAPGARPMRKSFSQPGLRSLAFRKEFQDASLRSSTFSS FDNDIENHLIGGHNVVQPTDMEENRTMLFTIGQSEVYLISPDTKKIALEKNFKEISFCSQGIRH VDHFGFICRECSGGGGAGFHFVCYVFQCTNEALVDEIMMTLKQAFTVAAVQQTAKAPAQLCEGC PLQGLHKLCERIEGMNSSKTKLELQKHLTTLTNQEQAMIFEEVQKLRPRNEQRENELIISFLRC LYEEKQKEHSHTGEPKQTLQVAAENIGSELPPSASRFRLDSLKNRAKRSLTESLESILSRGNKA RGLQDHSASVDLDSSTSSTLSNTSKELSMGDKEALPISESSFKLLGSSDDLSSDSESHIAEESA LLSPQQAFRRRANTLSHFPVECPAPPEPAQTSPGVSQRKLMRYHSVSTETPHERNVDHLPGGES RCCPGQPSDPPPLPPRLNPSASSPNFFKYLKHNSSGEQSGNAVPKSVSYRNALRKKLHSSSSVP NFLKFLAPVDENNTCDFKNTNRDFESKANHLGDTDGTPVKARRHSWRQQIFLRVATPQKACDSP SRYEDYSELGELPPRSPLEPVCEDGPFGPVQEEKKKTSRELRELWKKAILQQILLLRMEKENQK LQASENDLLNKRLKLDYEEITPCLKEVTTVWEKMLSTPGRSKIKFDMEKVHSAVGQGVPRHHRG EIWKFLAEQFHLKHPFPSKQQPKDVPYKELLKKLTSQQHAILIDLGRTFPTHPYFSAQLGAGQL SLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQI QMYQLSRLLHDYHRDLYNHLEEYEIGPSLYAAPWFLTVFASQFPLGFVARVFDMIFLQGSEVIF KVALSLLGSHKPLILQHENLETIVDFIKNTLPNLGLVQMEKTISQVFEMDIAKQLQAYEVEYHV LQEELIDSSPLSDNQRMDKLEKTNSSLRKQNLDLLEQLQVANARIQSLEVTVEKLLTSESKLKQ AVLTLEMERSALLQMVEELRRQMAQPSTAEPDCTRLEPTGD hide sequence

RefSeq Acc Id:	XP_006251068 ⟸ XM_006251006
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5ZLK4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSPLFSWVAKVPEIISSIRQAGKIARQEELRCPSEFDDTFAKKFEVLFCGRVTVAHKKAPPALI DECIEKFNHVSCGRRIDWDAPTGQPSAPGARPMRKSFSQPGLRSLAFRKEFQDASLRSSTFSSF DNDIENHLIGGHNVVQPTDMEENRTMLFTIGQSEVYLISPDTKKIALEKNFKEISFCSQGIRHV DHFGFICRECSGGGGAGFHFVCYVFQCTNEALVDEIMMTLKQAFTVAAVQQTAKAPAQLCEGCP LQGLHKLCERIEGMNSSKTKLELQKHLTTLTNQEQAMIFEEVQKLRPRNEQRENELIISFLRCL YEEKQKEHSHTGEPKQTLQVAAENIGSELPPSASRFRLDSLKNRAKRSLTESLESILSRGNKAR GLQDHSASVDLDSSTSSTLSNTSKELSMGDKEALPISESSFKLLGSSDDLSSDSESHIAEESAL LSPQQAFRRRANTLSHFPVECPAPPEPAQTSPGVSQRKLMRYHSVSTETPHERNVDHLPGGESR CCPGQPSDPPPLPPRLNPSASSPNFFKYLKHNSSGEQSGNAVPKSVSYRNALRKKLHSSSSVPN FLKFLAPVDENNTCDFKNTNRDFESKANHLGDTDGTPVKARRHSWRQQIFLRVATPQKACDSPS RYEDYSELGELPPRSPLEPVCEDGPFGPVQEEKKKTSRELRELWKKAILQQILLLRMEKENQKL QASENDLLNKRLKLDYEEITPCLKEVTTVWEKMLSTPGRSKIKFDMEKVHSAVGQGVPRHHRGE IWKFLAEQFHLKHPFPSKQQPKDVPYKELLKKLTSQQHAILIDLGRTFPTHPYFSAQLGAGQLS LYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQ MYQLSRLLHDYHRDLYNHLEEYEIGPSLYAAPWFLTVFASQFPLGFVARVFDMIFLQGSEVIFK VALSLLGSHKPLILQHENLETIVDFIKNTLPNLGLVQMEKTISQVFEMDIAKQLQAYEVEYHVL QEELIDSSPLSDNQRMDKLEKTNSSLRKQNLDLLEQLQVANARIQSLEVTVEKLLTSESKLKQA VLTLEMERSALLQMVEELRRQMAQPSTAEPDCTRLEPTGD hide sequence

RefSeq Acc Id:	XP_006251069 ⟸ XM_006251007
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I5ZLK4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRKSFSQPGLRSLAFRKEFQDASLRSSTFSSFDNDIENHLIGGHNVVQPTDMEENRTMLFTIGQ SEVYLISPDTKKIALEKNFKEISFCSQGIRHVDHFGFICRECSGGGGAGFHFVCYVFQCTNEAL VDEIMMTLKQAFTVAAVQQTAKAPAQLCEGCPLQGLHKLCERIEGMNSSKTKLELQKHLTTLTN QEQAMIFEEVQKLRPRNEQRENELIISFLRCLYEEKQKEHSHTGEPKQTLQVAAENIGSELPPS ASRFRLDSLKNRAKRSLTESLESILSRGNKARGLQDHSASVDLDSSTSSTLSNTSKELSMGDKE ALPISESSFKLLGSSDDLSSDSESHIAEESALLSPQQAFRRRANTLSHFPVECPAPPEPAQTSP GVSQRKLMRYHSVSTETPHERNVDHLPGGESRCCPGQPSDPPPLPPRLNPSASSPNFFKYLKHN SSGEQSGNAVPKSVSYRNALRKKLHSSSSVPNFLKFLAPVDENNTCDFKNTNRDFESKANHLGD TDGTPVKARRHSWRQQIFLRVATPQKACDSPSRYEDYSELGELPPRSPLEPVCEDGPFGPVQEE KKKTSRELRELWKKAILQQILLLRMEKENQKLQASENDLLNKRLKLDYEEITPCLKEVTTVWEK MLSTPGRSKIKFDMEKVHSAVGQGVPRHHRGEIWKFLAEQFHLKHPFPSKQQPKDVPYKELLKK LTSQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHM SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEYEIGPSLYAAP WFLTVFASQFPLGFVARVFDMIFLQGSEVIFKVALSLLGSHKPLILQHENLETIVDFIKNTLPN LGLVQMEKTISQVFEMDIAKQLQAYEVEYHVLQEELIDSSPLSDNQRMDKLEKTNSSLRKQNLD LLEQLQVANARIQSLEVTVEKLLTSESKLKQAVLTLEMERSALLQMVEELRRQMAQPSTAEPDC TRLEPTGD hide sequence

Ensembl Acc Id:

ENSRNOP00000033018 ⟸ ENSRNOT00000029209

Ensembl Acc Id:

ENSRNOP00000078738 ⟸ ENSRNOT00000094490

Ensembl Acc Id:

ENSRNOP00000079436 ⟸ ENSRNOT00000116025

Ensembl Acc Id:

ENSRNOP00000079959 ⟸ ENSRNOT00000103384

Ensembl Acc Id:

ENSRNOP00000088613 ⟸ ENSRNOT00000113583

RefSeq Acc Id:	NP_001414246 ⟸ NM_001427317
- UniProtKB:	A0A8I5ZMX5 (UniProtKB/TrEMBL), A0A8I5ZLK4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129413 ⟸ XM_063273343
- Peptide Label:	isoform X6
- UniProtKB:	D4AC16 (UniProtKB/TrEMBL), A0A8I5ZLK4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129412 ⟸ XM_063273342
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZLK4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129414 ⟸ XM_063273344
- Peptide Label:	isoform X8
- UniProtKB:	A6JDH3 (UniProtKB/TrEMBL)

Protein Domains

PID Rab-GAP TBC

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4AC16-F1-model_v2	AlphaFold	D4AC16	1-1257	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1304562	AgrOrtholog
BioCyc Gene	G2FUF-15711	BioCyc
Ensembl Genes	ENSRNOG00000002180	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000029209.8	UniProtKB/TrEMBL
	ENSRNOT00000094490.1	UniProtKB/TrEMBL
	ENSRNOT00000103384.1	UniProtKB/TrEMBL
	ENSRNOT00000113583.1	UniProtKB/TrEMBL
	ENSRNOT00000116025.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.2750	UniProtKB/TrEMBL
	2.30.29.30	UniProtKB/TrEMBL
	putative rabgap domain of human tbc1 domain family member 14 like domains	UniProtKB/TrEMBL
	Ypt/Rab-GAP domain of gyp1p, domain 3	UniProtKB/TrEMBL
InterPro	DUF3350	UniProtKB/TrEMBL
	PH_type	UniProtKB/TrEMBL
	PTyr_interaction_dom	UniProtKB/TrEMBL
	Rab-GTPase_TBC_sf	UniProtKB/TrEMBL
	Rab_GAP_TBC_domain	UniProtKB/TrEMBL
	RabGAP_TBC	UniProtKB/TrEMBL
NCBI Gene	360937	ENTREZGENE
PANTHER	RAB GTPASE-ACTIVATING PROTEIN 1-LIKE	UniProtKB/TrEMBL
	TBC1 DOMAIN FAMILY MEMBER 1 ISOFORM X1	UniProtKB/TrEMBL
Pfam	DUF3350	UniProtKB/TrEMBL
	PID	UniProtKB/TrEMBL
	TBC	UniProtKB/TrEMBL
PhenoGen	Tbc1d1	PhenoGen
PROSITE	PID	UniProtKB/TrEMBL
	TBC_RABGAP	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000002180	RatGTEx
SMART	PTB	UniProtKB/TrEMBL
	TBC	UniProtKB/TrEMBL
Superfamily-SCOP	PH domain-like	UniProtKB/TrEMBL
	RabGAP_TBC	UniProtKB/TrEMBL
UniProt	A0A8I5ZLK4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZMX5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AB45	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G5Y5	ENTREZGENE, UniProtKB/TrEMBL
	A6JDH3	ENTREZGENE, UniProtKB/TrEMBL
	D4AC16	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-25	Tbc1d1	TBC1 domain family member 1	Tbc1d1	TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-02-02	Tbc1d1	TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1	Tbc1d1	TBC1 domain family, member 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Tbc1d1	TBC1 domain family, member 1	Tbc1d1_predicted	TBC1 domain family, member 1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Tbc1d1_predicted	TBC1 domain family, member 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Mammalian Phenotype

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Mammalian Phenotype