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Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Rpl9 | Rat | Sepsis | | ISO | RPL9 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:27978524 | |
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Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Rpl9 | Rat | Sepsis | | ISO | RPL9 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:27978524 | |
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# | Reference Title | Reference Citation |
1. | Nerve growth factor selectively regulates expression of transcripts encoding ribosomal proteins. | Angelastro JM, etal., BMC Neurosci. 2002;3:3. Epub 2002 Feb 28. |
2. | Structures of the human and Drosophila 80S ribosome. | Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104. |
3. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
4. | Rat ISS GO annotations from GOA human gene data--August 2006 | GOA data from the GO Consortium |
5. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
6. | Electronic Transfer of LocusLink and RefSeq Data | NCBI rat LocusLink and RefSeq merged data July 26, 2002 |
7. | GOA pipeline | RGD automated data pipeline |
8. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
9. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
10. | The primary structure of rat ribosomal protein L9. | Suzuki K, etal., Gene 1990 Sep 14;93(2):297-300. |
11. | Isolation of eukaryotic ribosomal proteins. Purification and characterization of the 60 S ribosomal subunit proteins L4, L5, L7, L9, L11, L12, L13, L21, L22, L23, L26, L27, L30, L33, L35', L37, and L39. | Tsurugi K, etal., J Biol Chem. 1976 Dec 25;251(24):7940-6. |
PMID:7600302 | PMID:12477932 | PMID:12962325 | PMID:15489334 | PMID:15632090 | PMID:16452087 | PMID:19946888 | PMID:21423176 | PMID:21630459 | PMID:22871113 | PMID:23979707 | PMID:24625528 |
PMID:35352799 |
Rpl9 (Rattus norvegicus - Norway rat) |
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RPL9 (Homo sapiens - human) |
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Rpl9 (Mus musculus - house mouse) |
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Rpl9 (Chinchilla lanigera - long-tailed chinchilla) |
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RPL9 (Pan paniscus - bonobo/pygmy chimpanzee) |
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RPL9 (Canis lupus familiaris - dog) |
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Rpl9 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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RPL9 (Sus scrofa - pig) |
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RPL9 (Chlorocebus sabaeus - green monkey) |
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Rpl9 (Heterocephalus glaber - naked mole-rat) |
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Variants in Rpl9
4 total Variants ![]() |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
alimentary part of gastrointestinal system
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appendage
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circulatory system
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ectoderm
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endocrine system
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endoderm
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exocrine system
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hemolymphoid system
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hepatobiliary system
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mesenchyme
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mesoderm
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nervous system
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renal system
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reproductive system
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respiratory system
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4 | 19 | 87 | 170 | 117 | 123 | 74 | 53 | 74 | 324 | 165 | 149 | 66 | 83 | 49 |
RefSeq Transcripts | NM_001007598 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_063272990 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | BC060589 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
BC086561 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH473981 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ210154 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ210235 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ211371 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ212163 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ212174 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ212384 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ212431 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ216865 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ220825 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ221003 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ221028 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ221603 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ221794 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ221999 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ222130 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ222146 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ222204 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ222278 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ222508 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ222509 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ222609 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ222630 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ222743 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ223008 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ223059 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ223395 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ223420 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ223651 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ224555 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ224689 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ228320 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ228532 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ229128 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000014 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Ensembl Acc Id: | ENSRNOT00000038927 ⟹ ENSRNOP00000032635 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000076173 | ||||||||
Type: | CODING | ||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000076245 ⟹ ENSRNOP00000068363 | ||||||||
Type: | CODING | ||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000076432 | ||||||||
Type: | CODING | ||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000076849 | ||||||||
Type: | CODING | ||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000076914 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001007598 ⟹ NP_001007599 | ||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_063272990 ⟹ XP_063129060 | ||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | NP_001007599 | (Get FASTA) | NCBI Sequence Viewer |
XP_063129060 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAH60589 | (Get FASTA) | NCBI Sequence Viewer |
AAH86561 | (Get FASTA) | NCBI Sequence Viewer | |
EDL90064 | (Get FASTA) | NCBI Sequence Viewer | |
EDL90065 | (Get FASTA) | NCBI Sequence Viewer | |
EDL90066 | (Get FASTA) | NCBI Sequence Viewer | |
EDL90067 | (Get FASTA) | NCBI Sequence Viewer | |
EDL90068 | (Get FASTA) | NCBI Sequence Viewer | |
EDL90069 | (Get FASTA) | NCBI Sequence Viewer | |
EDL90070 | (Get FASTA) | NCBI Sequence Viewer | |
EDL90071 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000032635.3 | ||
ENSRNOP00000041817.3 | |||
ENSRNOP00000069650.1 | |||
GenBank Protein | P17077 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_001007599 ⟸ NM_001007598 |
- UniProtKB: | P17077 (UniProtKB/Swiss-Prot), A6JDE3 (UniProtKB/TrEMBL), Q6P9U5 (UniProtKB/TrEMBL) |
- Sequence: |
Ensembl Acc Id: | ENSRNOP00000032635 ⟸ ENSRNOT00000038927 |
Ensembl Acc Id: | ENSRNOP00000068363 ⟸ ENSRNOT00000076245 |
RefSeq Acc Id: | XP_063129060 ⟸ XM_063272990 |
- Peptide Label: | isoform X1 |
- UniProtKB: | P17077 (UniProtKB/Swiss-Prot), A6JDE3 (UniProtKB/TrEMBL), Q6P9U5 (UniProtKB/TrEMBL) |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-P17077-F1-model_v2 | AlphaFold | P17077 | 1-192 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13699316 | ||||||||
Promoter ID: | EPDNEW_R9841 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | LOC100360449_1 | ||||||||
Description: | ribosomal protein L9-like | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:62049 | AgrOrtholog |
BioCyc Gene | G2FUF-15744 | BioCyc |
Ensembl Genes | ENSRNOG00000026716 | Ensembl, UniProtKB/Swiss-Prot |
ENSRNOG00000028449 | Ensembl, UniProtKB/Swiss-Prot | |
ENSRNOG00000030476 | Ensembl, UniProtKB/Swiss-Prot | |
Ensembl Transcript | ENSRNOT00000038927.6 | UniProtKB/Swiss-Prot |
ENSRNOT00000042201.6 | UniProtKB/Swiss-Prot | |
ENSRNOT00000052231.5 | UniProtKB/Swiss-Prot | |
Gene3D-CATH | 3.90.930.12 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
IMAGE_CLONE | IMAGE:6888030 | IMAGE-MGC_LOAD |
IMAGE:7304371 | IMAGE-MGC_LOAD | |
InterPro | Ribosomal_L6 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ribosomal_L6_a/b-dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Ribosomal_L6_a/b-dom_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Ribosomal_L6_CS2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | rno:29257 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
MGC_CLONE | MGC:105798 | IMAGE-MGC_LOAD |
MGC:72949 | IMAGE-MGC_LOAD | |
NCBI Gene | 29257 | ENTREZGENE |
PANTHER | LARGE RIBOSOMAL SUBUNIT PROTEIN UL6 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PTHR11655 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | Ribosomal_L6 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PhenoGen | Rpl9 | PhenoGen |
PIRSF | Ribosomal_L6 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PROSITE | RIBOSOMAL_L6_2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
RatGTEx | ENSRNOG00000026716 | RatGTEx |
ENSRNOG00000028449 | RatGTEx | |
ENSRNOG00000030476 | RatGTEx | |
ENSRNOG00055017984 | RatGTEx | |
ENSRNOG00060015961 | RatGTEx | |
ENSRNOG00065013441 | RatGTEx | |
Superfamily-SCOP | SSF56053 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
UniProt | A6JDE3 | ENTREZGENE, UniProtKB/TrEMBL |
P17077 | ENTREZGENE | |
Q6P9U5 | ENTREZGENE, UniProtKB/TrEMBL | |
RL9_RAT | UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2013-04-12 | Rpl9 | ribosomal protein L9 | LOC100362838 | ribosomal protein L9-like | Data merged from RGD:2323940 | 737654 | PROVISIONAL |
2010-05-06 | LOC100362838 | ribosomal protein L9-like | Symbol and Name status set to provisional | 70820 | PROVISIONAL | ||
2002-06-10 | Rpl9 | ribosomal protein L9 | Name updated | 70584 | APPROVED |
Note Type | Note | Reference |
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gene_other | 20-23 copies of the gene | 61736 |
gene_protein | consists of 192 amino acids and has an Mr of 21879 | 61736 |