Cpeb2 (cytoplasmic polyadenylation element binding protein 2) - Rat Genome Database

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Gene: Cpeb2 (cytoplasmic polyadenylation element binding protein 2) Rattus norvegicus
Analyze
Symbol: Cpeb2
Name: cytoplasmic polyadenylation element binding protein 2
RGD ID: 1307485
Description: Exhibits GTPase inhibitor activity; ribosomal large subunit binding activity; and ribosomal small subunit binding activity. Involved in negative regulation of GTPase activity. Predicted to localize to several cellular components, including messenger ribonucleoprotein complex; neuron projection; and polysome. Orthologous to human CPEB2 (cytoplasmic polyadenylation element binding protein 2); INTERACTS WITH 1,3-dinitrobenzene; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: MODEL
Also known as: cytoplasmic polyadenylation element-binding protein 2; LOC360949; LOW QUALITY PROTEIN: cytoplasmic polyadenylation element-binding protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21467,787,503 - 67,839,973 (-)NCBI
Rnor_6.0 Ensembl1472,331,705 - 72,380,330 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01472,327,929 - 72,382,519 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01472,356,390 - 72,408,723 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41472,955,778 - 73,007,518 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11472,958,170 - 73,009,889 (-)NCBI
Celera1466,739,757 - 66,794,869 (-)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bromobenzene  (EXP)
butanal  (ISO)
calcitriol  (ISO)
chloroprene  (EXP,ISO)
chlorpyrifos  (EXP,ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clofibric acid  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diazinon  (ISO)
dibutyl phthalate  (EXP)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
genistein  (ISO)
gentamycin  (EXP)
indole-3-methanol  (EXP)
indometacin  (ISO)
L-methionine  (ISO)
mercury dibromide  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
nickel atom  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (ISO)
pentanal  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (ISO)
propiconazole  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sulforaphane  (ISO)
tamoxifen  (ISO)
testosterone  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (ISO)
thimerosal  (ISO)
thioacetamide  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vincristine  (ISO)
zoledronic acid  (ISO)

References

Additional References at PubMed
PMID:12672660   PMID:18752464   PMID:20639532   PMID:22658674   PMID:22681889   PMID:25931508  


Genomics

Comparative Map Data
Cpeb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21467,787,503 - 67,839,973 (-)NCBI
Rnor_6.0 Ensembl1472,331,705 - 72,380,330 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01472,327,929 - 72,382,519 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01472,356,390 - 72,408,723 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41472,955,778 - 73,007,518 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11472,958,170 - 73,009,889 (-)NCBI
Celera1466,739,757 - 66,794,869 (-)NCBICelera
Cytogenetic Map14q21NCBI
CPEB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl415,002,481 - 15,070,153 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl415,002,674 - 15,070,153 (+)EnsemblGRCh38hg38GRCh38
GRCh38415,002,426 - 15,070,153 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37415,004,105 - 15,071,775 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36414,614,620 - 14,680,872 (+)NCBINCBI36hg18NCBI36
Celera415,469,162 - 15,536,022 (+)NCBI
Cytogenetic Map4p15.32NCBI
HuRef414,355,088 - 14,422,584 (+)NCBIHuRef
CHM1_1415,002,283 - 15,069,765 (+)NCBICHM1_1
Cpeb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39543,382,692 - 43,447,067 (+)NCBIGRCm39mm39
GRCm39 Ensembl543,390,513 - 43,447,067 (+)Ensembl
GRCm38543,225,349 - 43,289,724 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl543,233,170 - 43,289,724 (+)EnsemblGRCm38mm10GRCm38
MGSCv37543,624,702 - 43,680,963 (+)NCBIGRCm37mm9NCBIm37
MGSCv36543,522,207 - 43,574,438 (+)NCBImm8
Celera540,646,207 - 40,718,936 (+)NCBICelera
Cytogenetic Map5B3NCBI
Cpeb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554808,853,449 - 8,906,859 (-)NCBIChiLan1.0ChiLan1.0
CPEB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1414,732,309 - 14,800,069 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v049,431,573 - 9,499,036 (+)NCBIMhudiblu_PPA_v0panPan3
CPEB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1365,200,175 - 65,277,353 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl365,203,759 - 65,267,967 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha367,717,257 - 67,785,783 (-)NCBI
ROS_Cfam_1.0365,792,581 - 65,861,000 (-)NCBI
UMICH_Zoey_3.1365,167,715 - 65,236,072 (-)NCBI
UNSW_CanFamBas_1.0365,371,886 - 65,440,166 (-)NCBI
UU_Cfam_GSD_1.0365,731,829 - 65,800,251 (-)NCBI
Cpeb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528559,025,633 - 59,097,078 (-)NCBI
SpeTri2.0NW_00493647712,727,325 - 12,798,733 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPEB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl810,401,296 - 10,472,138 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1810,401,350 - 10,472,141 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.289,970,709 - 10,009,656 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.289,816,503 - 9,826,023 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CPEB2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12735,143,510 - 35,209,851 (-)NCBI
ChlSab1.1 Ensembl2735,147,299 - 35,209,649 (-)Ensembl
Cpeb2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475516,732,561 - 16,791,108 (-)NCBI


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14975643572854397Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1412680424106641756Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143259392686191589Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143316331673391571Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)144031561085315610Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)144031561085315610Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)144031561085315610Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)144031561085315610Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)144163756980841518Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1442442731108833671Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1443910761105074364Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1451818462105074364Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1460980905105980905Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1460980905105980905Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)146187332388870994Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1461993178106993178Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1463548095108548095Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:59
Count of miRNA genes:55
Interacting mature miRNAs:59
Transcripts:ENSRNOT00000006727
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 6 12 12 12 60 9 9 10
Low 3 37 45 29 19 29 8 11 14 26 32 1 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008766209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF973322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF973323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000006727   ⟹   ENSRNOP00000006727
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1472,331,705 - 72,380,330 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000081878   ⟹   ENSRNOP00000070514
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1472,331,705 - 72,380,330 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000082653   ⟹   ENSRNOP00000073259
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1472,331,705 - 72,380,330 (-)Ensembl
RefSeq Acc Id: XM_008766209   ⟹   XP_008764431
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1466,739,757 - 66,794,869 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008770226   ⟹   XP_008768448
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01472,327,929 - 72,382,519 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039092796   ⟹   XP_038948724
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21467,787,503 - 67,839,973 (-)NCBI
RefSeq Acc Id: XM_039092797   ⟹   XP_038948725
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21467,787,503 - 67,839,973 (-)NCBI
RefSeq Acc Id: XM_039092798   ⟹   XP_038948726
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21467,787,503 - 67,839,973 (-)NCBI
RefSeq Acc Id: XM_039092799   ⟹   XP_038948727
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21467,787,503 - 67,839,973 (-)NCBI
RefSeq Acc Id: XM_039092801   ⟹   XP_038948729
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21467,787,503 - 67,839,973 (-)NCBI
RefSeq Acc Id: XM_039092802   ⟹   XP_038948730
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21467,787,503 - 67,839,973 (-)NCBI
RefSeq Acc Id: XM_039092803   ⟹   XP_038948731
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21467,787,503 - 67,839,973 (-)NCBI
RefSeq Acc Id: XM_039092804   ⟹   XP_038948732
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21467,787,503 - 67,839,973 (-)NCBI
RefSeq Acc Id: XM_039092805   ⟹   XP_038948733
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21467,787,503 - 67,839,973 (-)NCBI
RefSeq Acc Id: XM_039092806   ⟹   XP_038948734
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21467,787,503 - 67,839,973 (-)NCBI
RefSeq Acc Id: XM_039092807   ⟹   XP_038948735
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21467,787,503 - 67,839,973 (-)NCBI
RefSeq Acc Id: XM_039092808   ⟹   XP_038948736
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21467,787,503 - 67,839,973 (-)NCBI
RefSeq Acc Id: XM_039092809   ⟹   XP_038948737
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21467,787,503 - 67,839,973 (-)NCBI
RefSeq Acc Id: XM_039092810   ⟹   XP_038948738
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21467,787,503 - 67,837,657 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_008764431   ⟸   XM_008766209
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008768448   ⟸   XM_008770226
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000073259   ⟸   ENSRNOT00000082653
RefSeq Acc Id: ENSRNOP00000006727   ⟸   ENSRNOT00000006727
RefSeq Acc Id: ENSRNOP00000070514   ⟸   ENSRNOT00000081878
RefSeq Acc Id: XP_038948737   ⟸   XM_039092809
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038948735   ⟸   XM_039092807
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038948732   ⟸   XM_039092804
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038948730   ⟸   XM_039092802
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038948727   ⟸   XM_039092799
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038948725   ⟸   XM_039092797
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038948736   ⟸   XM_039092808
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038948734   ⟸   XM_039092806
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038948731   ⟸   XM_039092803
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038948729   ⟸   XM_039092801
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038948726   ⟸   XM_039092798
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038948733   ⟸   XM_039092805
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038948724   ⟸   XM_039092796
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038948738   ⟸   XM_039092810
- Peptide Label: isoform X14
Protein Domains
RRM

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699360
Promoter ID:EPDNEW_R9882
Type:single initiation site
Name:Cpeb2_1
Description:cytoplasmic polyadenylation element binding protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01472,380,304 - 72,380,364EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307485 AgrOrtholog
Ensembl Genes ENSRNOG00000005043 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000006727 UniProtKB/TrEMBL
  ENSRNOP00000070514 UniProtKB/TrEMBL
  ENSRNOP00000073259 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006727 UniProtKB/TrEMBL
  ENSRNOT00000081878 UniProtKB/TrEMBL
  ENSRNOT00000082653 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.130 UniProtKB/TrEMBL
  3.30.70.330 UniProtKB/TrEMBL
InterPro CEBP_ZZ UniProtKB/TrEMBL
  CEBP_ZZ_sf UniProtKB/TrEMBL
  CPEB UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_RNP1 UniProtKB/TrEMBL
KEGG Report rno:360949 UniProtKB/TrEMBL
NCBI Gene 360949 ENTREZGENE
PANTHER PTHR12566 UniProtKB/TrEMBL
Pfam CEBP_ZZ UniProtKB/TrEMBL
  RRM_7 UniProtKB/TrEMBL
PhenoGen Cpeb2 PhenoGen
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A0G2JY45_RAT UniProtKB/TrEMBL
  A0A0G2K520_RAT UniProtKB/TrEMBL
  D3ZHK8_RAT UniProtKB/TrEMBL
  G8EXB7_RAT UniProtKB/TrEMBL
  G8EXB8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Cpeb2  cytoplasmic polyadenylation element binding protein 2   Cpeb2_predicted  cytoplasmic polyadenylation element binding protein 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Cpeb2_predicted  cytoplasmic polyadenylation element binding protein 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED