LOC102550584 (hornerin-like) - Rat Genome Database

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Gene: LOC102550584 (hornerin-like) Rattus norvegicus
Analyze
Symbol: LOC102550584
Name: hornerin-like
RGD ID: 7536866
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814100,464,339 - 100,481,224 (+)NCBIGRCr8
mRatBN7.21496,262,368 - 96,279,321 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.014107,040,773 - 107,062,758 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.014107,105,535 - 107,141,042 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1495,258,619 - 95,279,947 (+)NCBICelera
Cytogenetic Map14q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102550584
136 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005493480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XR_005493480
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814100,464,339 - 100,481,224 (+)NCBI
mRatBN7.21496,262,368 - 96,279,321 (+)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-14819 BioCyc
NCBI Gene LOC102550584 ENTREZGENE
PhenoGen LOC102550584 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-17 LOC102550584  hornerin-like      Symbol and Name status set to provisional 70820 PROVISIONAL