Rpl38-ps2 (ribosomal protein L38, pseudogene 2) - Rat Genome Database

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Gene: Rpl38-ps2 (ribosomal protein L38, pseudogene 2) Rattus norvegicus
Analyze
Symbol: Rpl38-ps2
Name: ribosomal protein L38, pseudogene 2
RGD ID: 1589907
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L38 pseudogene; LOC689671
Related Functional Gene: Rpl38  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81498,601,342 - 98,601,673 (+)NCBIGRCr8
mRatBN7.21494,399,995 - 94,400,277 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.014104,452,887 - 104,453,167 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.014104,186,079 - 104,186,345 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414100,950,476 - 100,950,688 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1493,422,973 - 93,423,253 (+)NCBICelera
Cytogenetic Map14q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582201Sffal2Serum free fatty acids level QTL 240.0002blood free fatty acid amount (VT:0001553)serum free fatty acids level (CMO:0000547)149255388695876975Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
631213Bw60Body weight QTL604.51retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)147995092195876975Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532395876975Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat
4889951Bss92Bone structure and strength QTL 923.9tibia area (VT:1000281)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)148205747195876975Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XR_594306
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1493,422,970 - 93,423,253 (+)NCBI
RefSeq Acc Id: XR_595945
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.014104,452,884 - 104,453,167 (+)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-14888 BioCyc
NCBI Gene 689671 ENTREZGENE
PhenoGen Rpl38-ps2 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-12-02 Rpl38-ps2  ribosomal protein L38, pseudogene 2  LOC689671  60S ribosomal protein L38 pseudogene  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC689671  60S ribosomal protein L38 pseudogene  LOC682065  similar to 60S ribosomal protein L38  Data merged from RGD:1588102 1643240 APPROVED
2006-11-20 LOC689671  60S ribosomal protein L38 pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC682065  similar to 60S ribosomal protein L38      Symbol and Name status set to provisional 70820 PROVISIONAL