Ctbp1 (C-terminal binding protein 1)

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Gene: Ctbp1 (C-terminal binding protein 1) Rattus norvegicus

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Symbol:

Ctbp1

Name:

C-terminal binding protein 1

RGD ID:

2441

Description:

Enables NAD binding activity; PDZ domain binding activity; and protein homodimerization activity. Involved in presynapse to nucleus signaling pathway. Located in cytoplasm; nucleus; and presynapse. Is active in glutamatergic synapse. Is extrinsic component of presynaptic endocytic zone membrane. Orthologous to human CTBP1 (C-terminal binding protein 1); PARTICIPATES IN Notch signaling pathway; chronic myeloid leukemia pathway; Wnt signaling pathway; INTERACTS WITH 2,6-dinitrotoluene; 3H-1,2-dithiole-3-thione; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

50 kDa BFA-dependent ADP-ribosylation substrate; 50-kDa BFA-induced ADP-ribosylated substrate; 50-kDaBFA-inducedADP-ribosylatedsubstrate; BARS; BARS-50; brefeldin A-ADP-riboslyated substrate; C-terminal-binding protein 1; C-terminal-binding protein 3; C-terminus binding protein 3/brefeldin A (BFA) adenosine diphosphate-ribosylated substrate; ctBP3; CtBP3/BARS; MGC93318

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CTBP1 (C-terminal binding protein 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Ctbp1 (C-terminal binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ctbp1 (C-terminal binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CTBP1 (C-terminal binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CTBP1 (C-terminal binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ctbp1 (C-terminal binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CTBP1 (C-terminal binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CTBP1 (C-terminal binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ctbp1 (C-terminal binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CTBP2 (C-terminal binding protein 2)	HGNC	OrthoDB
Homo sapiens (human):	AKT3 (AKT serine/threonine kinase 3)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CTBP1 (C-terminal binding protein 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ctbp1 (C-terminal binding protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zgc:136929	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CtBP	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ctbp-1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	FDH1	Alliance	DIOPT (Ensembl Compara\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	ctbp1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	81,679,956 - 81,707,331 (+)	NCBI		GRCr8
mRatBN7.2	14	77,455,580 - 77,482,821 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	77,455,696 - 77,482,821 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	81,897,623 - 81,924,823 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	83,138,172 - 83,165,372 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	79,583,490 - 79,610,690 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	82,762,109 - 82,789,350 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	82,762,190 - 82,789,319 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	83,447,911 - 83,475,152 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	83,022,824 - 83,050,335 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	83,025,214 - 83,052,726 (-)	NCBI
Celera	14	76,376,169 - 76,398,029 (+)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cherubism (ISO)

Colorectal Neoplasms (ISO)

genetic disease (ISO)

HYPOTONIA, ATAXIA, DEVELOPMENTAL DELAY, AND TOOTH ENAMEL DEFECT SYNDROME (ISO)

intellectual disability (ISO)

microcephaly (ISO)

Wittwer Syndrome (ISO)

Wolf-Hirschhorn syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,6-dinitrotoluene (EXP)

2-methylcholine (ISO)

3H-1,2-dithiole-3-thione (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

Allylamine (EXP)

alpha-pinene (ISO)

amitrole (EXP)

ammonium chloride (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

benzatropine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-chloroethyl) sulfide (EXP)

bisphenol A (EXP,ISO)

bucladesine (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

CGP 52608 (ISO)

cisplatin (ISO)

clozapine (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

Cuprizon (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

elemental selenium (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

ionomycin (ISO)

ivermectin (ISO)

mercury atom (ISO)

mercury(0) (ISO)

N-methyl-4-phenylpyridinium (ISO)

niclosamide (ISO)

Nor-9-carboxy-delta9-THC (ISO)

oxaliplatin (EXP)

ozone (ISO)

paclitaxel (ISO)

paracetamol (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phorbol 13-acetate 12-myristate (ISO)

pirinixic acid (ISO)

progesterone (ISO)

pyrrolidine dithiocarbamate (ISO)

pyruvic acid (ISO)

SB 431542 (ISO)

selenium atom (ISO)

sulfadimethoxine (EXP)

tetrachloromethane (ISO)

thapsigargin (EXP)

topotecan (EXP)

trichostatin A (ISO)

triptonide (ISO)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

membrane fusion (TAS)

negative regulation of DNA-templated transcription (IEA,ISO,ISS)

negative regulation of transcription by RNA polymerase II (IEA,ISO)

positive regulation of DNA-templated transcription (IEA)

presynapse to nucleus signaling pathway (IDA,IMP)

regulation of cell cycle (IEA,ISO)

regulation of transcription by RNA polymerase II (IBA)

synaptic vesicle clustering (IEA,ISO)

synaptic vesicle endocytosis (IEA,ISO)

white fat cell differentiation (IEA,ISO,ISS)

Cellular Component

cytoplasm (IMP)

extrinsic component of presynaptic endocytic zone membrane (IDA)

GABA-ergic synapse (IEA,ISO)

glutamatergic synapse (IDA,IEA,IMP,ISO)

neuron projection (IEA)

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA,IMP,ISO,ISS)

presynaptic active zone cytoplasmic component (IEA,ISO)

transcription repressor complex (IEA,ISO,ISS)

Molecular Function

acyltransferase activity (TAS)

chromatin binding (IEA,ISO)

DNA-binding transcription factor binding (IBA,ISO)

identical protein binding (IEA,ISO)

NAD binding (IDA,IEA)

oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (IEA)

PDZ domain binding (IPI)

protein binding (IPI,ISO)

protein domain specific binding (IEA,ISO)

protein homodimerization activity (IPI)

RNA polymerase II-specific DNA-binding transcription factor binding (IEA,ISO)

transcription coactivator activity (IBA)

transcription coregulator binding (IBA)

transcription corepressor activity (IBA,IEA,ISO,TAS)

transcription corepressor binding (IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

chronic myeloid leukemia pathway (IEA)

Notch signaling pathway (IEA,ISO)

Wnt signaling pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Molecular cloning of matrin 3. A 125-kilodalton protein of the nuclear matrix contains an extensive acidic domain.	Belgrader P, etal., J Biol Chem 1991 May 25;266(15):9893-9.
2.	CtBP, an unconventional transcriptional corepressor in development and oncogenesis.	Chinnadurai G Mol Cell 2002 Feb;9(2):213-24.
3.	Evidence that the 50-kDa substrate of brefeldin A-dependent ADP-ribosylation binds GTP and is modulated by the G-protein beta gamma subunit complex.	Di Girolamo M, etal., Proc Natl Acad Sci U S A 1995 Jul 18;92(15):7065-9.
4.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
6.	Two nonconsensus sites in the Epstein-Barr virus oncoprotein EBNA3A cooperate to bind the co-repressor carboxyl-terminal-binding protein (CtBP).	Hickabottom M, etal., J Biol Chem 2002 Dec 6;277(49):47197-204. Epub 2002 Oct 7.
7.	CtBP1-Mediated Membrane Fission Contributes to Effective Recycling of Synaptic Vesicles.	Ivanova D, etal., Cell Rep. 2020 Feb 18;30(7):2444-2459.e7. doi: 10.1016/j.celrep.2020.01.079.
8.	Synaptic activity controls localization and function of CtBP1 via binding to Bassoon and Piccolo.	Ivanova D, etal., EMBO J. 2015 Apr 15;34(8):1056-77. doi: 10.15252/embj.201488796. Epub 2015 Feb 4.
9.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
10.	CtBP1/BARS Gly172-->Glu mutant structure: impairing NAD(H)-binding and dimerization.	Nardini M, etal., Biochem Biophys Res Commun. 2009 Mar 27;381(1):70-4. doi: 10.1016/j.bbrc.2009.02.010. Epub 2009 Feb 10.
11.	CtBP/BARS: a dual-function protein involved in transcription co-repression and Golgi membrane fission.	Nardini M, etal., EMBO J 2003 Jun 16;22(12):3122-30.
12.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
13.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
14.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
15.	Specific recognition of ZNF217 and other zinc finger proteins at a surface groove of C-terminal binding proteins.	Quinlan KG, etal., Mol Cell Biol. 2006 Nov;26(21):8159-72. Epub 2006 Aug 28.
16.	GOA pipeline	RGD automated data pipeline
17.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
18.	Binding of neuronal nitric-oxide synthase (nNOS) to carboxyl-terminal-binding protein (CtBP) changes the localization of CtBP from the nucleus to the cytosol: a novel function for targeting by the PDZ domain of nNOS.	Riefler GM and Firestein BL, J Biol Chem. 2001 Dec 21;276(51):48262-8. Epub 2001 Oct 5.
19.	Molecular cloning and functional characterization of brefeldin A-ADP-ribosylated substrate. A novel protein involved in the maintenance of the Golgi structure.	Spano S, etal., J Biol Chem 1999 Jun 18;274(25):17705-10.
20.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
21.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data

Additional References at PubMed

PMID:12037320	PMID:14701752	PMID:15232108	PMID:16287852	PMID:16609867	PMID:16702210	PMID:17392792	PMID:18374649	PMID:18483224	PMID:19162039	PMID:21102443	PMID:21499258
PMID:21988832	PMID:22301782	PMID:22745816	PMID:23859824	PMID:24722188	PMID:25416956	PMID:27107012	PMID:28408745	PMID:31340205	PMID:31515488

Genomics

Comparative Map Data

Ctbp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	81,679,956 - 81,707,331 (+)	NCBI		GRCr8
mRatBN7.2	14	77,455,580 - 77,482,821 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	77,455,696 - 77,482,821 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	81,897,623 - 81,924,823 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	83,138,172 - 83,165,372 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	79,583,490 - 79,610,690 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	82,762,109 - 82,789,350 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	82,762,190 - 82,789,319 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	83,447,911 - 83,475,152 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	83,022,824 - 83,050,335 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	83,025,214 - 83,052,726 (-)	NCBI
Celera	14	76,376,169 - 76,398,029 (+)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

CTBP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	1,211,445 - 1,250,355 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	1,211,445 - 1,250,333 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	1,205,233 - 1,244,143 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	1,195,228 - 1,232,908 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	1,195,117 - 1,232,621	NCBI
Celera	4	1,138,238 - 1,175,924 (-)	NCBI		Celera
Cytogenetic Map	4	p16.3	NCBI
HuRef	4	1,173,813 - 1,211,667 (-)	NCBI		HuRef
CHM1_1	4	1,204,881 - 1,242,708 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	1,210,608 - 1,249,282 (-)	NCBI		T2T-CHM13v2.0

Ctbp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	33,405,067 - 33,432,348 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	33,405,067 - 33,432,338 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	33,247,723 - 33,275,004 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	33,247,723 - 33,274,994 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	33,590,372 - 33,617,618 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	33,564,580 - 33,591,826 (-)	NCBI		MGSCv36	mm8
Celera	5	30,726,910 - 30,746,219 (-)	NCBI		Celera
Cytogenetic Map	5	B1	NCBI
cM Map	5	17.52	NCBI

Ctbp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955514	626,645 - 652,817 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955514	630,168 - 652,817 (-)	NCBI	ChiLan1.0	ChiLan1.0

CTBP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	1,542,985 - 1,581,765 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	1,509,137 - 1,547,666 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	1,354,806 - 1,393,244 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	1,238,982 - 1,275,536 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	1,238,984 - 1,266,822 (-)	Ensembl	panpan1.1		panPan2

CTBP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	91,385,733 - 91,400,252 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	91,379,049 - 91,400,656 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	93,843,707 - 93,867,009 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	92,375,018 - 92,398,321 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	3	91,548,411 - 91,571,713 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	91,601,300 - 91,624,692 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	91,985,325 - 92,008,625 (+)	NCBI		UU_Cfam_GSD_1.0

Ctbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	68,331,034 - 68,353,468 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936477	22,032,664 - 22,055,187 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936477	22,032,712 - 22,055,160 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CTBP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	475,888 - 496,002 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	475,164 - 496,510 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CTBP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	47,533,490 - 47,570,505 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	27	47,544,682 - 47,570,636 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666051	3,909,688 - 3,946,439 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ctbp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624755	25,999,713 - 26,021,331 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624755	25,998,524 - 26,021,223 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ctbp1
64 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	676
Count of miRNA genes:	286
Interacting mature miRNAs:	353
Transcripts:	ENSRNOT00000057929, ENSRNOT00000065393
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313089	Bss81	Bone structure and strength QTL 81	3.4	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	14	37669719	82669719	Rat
9590294	Uminl4	Urine mineral level QTL 4	5.66	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	14	55624247	100624247	Rat
1582236	Gluco22	Glucose level QTL 22	3.3	0.0164	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	92554092	Rat
2300197	Scl59	Serum cholesterol level QTL 59			blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	55147478	100147478	Rat
70153	Bp59	Blood pressure QTL 59	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	14	68757796	83368335	Rat
70187	Pancm5	Pancreatic morphology QTL 5	16.7		pancreas mass (VT:0010144)	pancreas weight to body weight ratio (CMO:0000630)	14	30320092	80829842	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	40793460	98037301	Rat
1582259	Gluco23	Glucose level QTL 23	3.1	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	70053989	104886043	Rat
1582197	Gluco27	Glucose level QTL 27	3.4	0.0006	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	73415323	92554092	Rat
2313100	Bss82	Bone structure and strength QTL 82	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	14	37669719	82669719	Rat
634328	Hc5	Hypercalciuria QTL 5	2.3		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	14	58184885	103184885	Rat
1582250	Gluco26	Glucose level QTL 26	3.3	0.0009	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	95876975	Rat
2317879	Alcrsp27	Alcohol response QTL 27	3.3	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	14	56631369	101631369	Rat
1641900	Alcrsp11	Alcohol response QTL 11			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	14	70053989	104886043	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	95876975	Rat
1582255	Gluco29	Glucose level QTL 29	3.1	0.0025	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	14	73415323	92554092	Rat
9589034	Epfw11	Epididymal fat weight QTL 11	6	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	14	55624247	100624247	Rat
1582209	Gluco20	Glucose level QTL 20	3.8	0.0005	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	92554092	Rat
2313048	Bss84	Bone structure and strength QTL 84	3.1	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	14	37669719	82669719	Rat
1300136	Rf22	Renal function QTL 22	3.9		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	14	42262529	95023211	Rat
1549834	Scl45	Serum cholesterol level QTL 45	5.8		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	50023211	95023211	Rat
738037	Hcas6	Hepatocarcinoma susceptibility QTL 6	2.93		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	14	39057237	83368335	Rat
2313084	Bss83	Bone structure and strength QTL 83	2.9	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	14	37669719	82669719	Rat

Markers in Region

RH128943

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	77,482,626 - 77,482,820 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	82,789,156 - 82,789,349	NCBI	Rnor6.0
Rnor_5.0	14	83,474,958 - 83,475,151	UniSTS	Rnor5.0
RGSC_v3.4	14	83,022,792 - 83,022,985	UniSTS	RGSC3.4
Celera	14	76,397,868 - 76,398,061	UniSTS
Cytogenetic Map	14	q21	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system

circulatory system

endocrine system

exocrine system

hemolymphoid system

hepatobiliary system

integumental system

musculoskeletal system

nervous system

renal system

reproductive system

respiratory system

appendage

High

Medium

141

227

147

250

115

145

Low

Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_019201	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599147	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272996	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272998	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC111221	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF067795	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC078778	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000057929 ⟹ ENSRNOP00000054738

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	77,455,696 - 77,482,286 (+)	Ensembl
Rnor_6.0 Ensembl	14	82,762,190 - 82,788,736 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000065393 ⟹ ENSRNOP00000062945

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	77,455,742 - 77,482,821 (+)	Ensembl
Rnor_6.0 Ensembl	14	82,769,642 - 82,789,319 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112665 ⟹ ENSRNOP00000080240

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	77,455,696 - 77,482,821 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119292 ⟹ ENSRNOP00000081185

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	77,455,696 - 77,482,821 (+)	Ensembl

RefSeq Acc Id:

NM_019201 ⟹ NP_062074

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,680,096 - 81,707,298 (+)	NCBI
mRatBN7.2	14	77,455,586 - 77,482,788 (+)	NCBI
Rnor_6.0	14	82,762,115 - 82,789,317 (+)	NCBI
Rnor_5.0	14	83,447,911 - 83,475,152 (+)	NCBI
RGSC_v3.4	14	83,022,824 - 83,050,335 (-)	RGD
Celera	14	76,376,169 - 76,398,029 (+)	RGD

Sequence:

show sequence

GCGCGGCTGGCGGCGCGGTGGCGGCTCGGCACGGCGGTGGCCGGTCGCAGGCGGCCGGGCGGAA
TAGCAGACTGCGCCGAAGCCGCCCCAGGCGCAGGGCTCGCGGCGGCGGAGAGCGCCGGACTCAT
CGGGGCCCGCGGCCACCCGCGCCTTTCAATGGGCAGCTCGCACTTGCTCAACAAGGGCCTGCCG
CTGGTAAGACTTTGAACCCGACGCAGGCTTCAGTGGCTGCTGTGGAGCAGAAGCCTGAGAGCTT
TGGTTGGAGACAATAAGACGTGGGATGAGGCTCCGTGACAGAACGCGGTTCGGCCTGGGGATTC
TGAAGACAAAAAGCTTTGGACAGGCGAATTCATGGTCGTGGAAACCCCGCCCCAATTAAGCAAT
GTCAGGCGTCCGACCTCCCATCATGAACGGGCCCATGCACCCCCGGCCCCTGGTGGCGCTGCTG
GATGGCCGGGACTGCACAGTGGAGATGCCTATCCTGAAGGATGTGGCCACAGTAGCCTTCTGTG
ATGCGCAGTCCACACAGGAGATCCATGAGAAGGTACTGAATGAGGCAGTGGGCGCCCTGATGTA
CCATACCATCACACTGACCAGAGAAGATCTGGAGAAGTTTAAAGCTCTCAGAATCATCGTCCGA
ATTGGCAGCGGGTTTGACAACATAGACATCAAGTCAGCTGGTGATCTAGGCATCGCAGTGTGCA
ATGTACCAGCAGCATCTGTGGAAGAAACAGCAGACTCCACCCTGTGCCACATTCTGAACCTATA
CCGACGAACTACCTGGCTACACCAGGCACTTCGGGAAGGCACTCGGGTCCAGAGTGTAGAGCAG
ATCCGAGAGGTGGCTTCAGGAGCTGCCAGGATCCGTGGAGAGACCTTGGGCATCATTGGACTAG
GTCGTGTGGGCCAGGCGGTGGCACTTCGGGCAAAGGCTTTTGGCTTCAACGTCCTCTTCTATGA
CCCATACCTATCTGATGGAATCGAGCGGGCCCTGGGGCTGCAGCGTGTGAGCACACTGCAGGAC
CTGCTCTTCCACAGTGACTGCGTTACCCTGCATTGCGGCCTCAATGAGCACAACCACCACCTCA
TCAATGACTTCACAGTCAAGCAGATGAGACAAGGAGCCTTCCTGGTGAACACAGCCCGTGGTGG
CCTGGTGGATGAGAAGGCACTAGCCCAGGCCCTGAAGGAAGGGCGGATCCGTGGCGCAGCGCTG
GACGTGCATGAGTCAGAGCCTTTCAGCTTTAGCCAGGGACCCTTAAAGGATGCACCCAACCTCA
TCTGCACCCCCCATGCTGCATGGTACAGTGAGCAGGCGTCCATTGAGATGCGAGAGGAGGCAGC
CCGGGAAATCCGACGAGCCATCACAGGCCGGATCCCAGATAGCTTGAAAAACTGTGTCAACAAG
GACCACCTGACAGCTGCCACCCACTGGGCCAGCATGGACCCTGCTGTGGTGCACCCTGAGCTCA
ATGGGGCTGCCTACAGCAGGTACCCTCCAGGTGTGGTGAGTGTGGCCCCCACTGGCATCCCAGC
TGCTGTGGAAGGTATTGTTCCCAGCGCCATGTCCCTGTCCCATGGCCTGCCCCCTGTGGCCCAC
CCACCCCACGCTCCTTCTCCTGGCCAGACTGTCAAGCCTGAGGCGGATAGAGACCATACGACTG
ACCAGTTGTAGCCTGTGAGGAGCTCTCCAGCCTTGACACCTGGTGGAGGGAGCTGCACACCCTT
GGACCCAAGTGTGCAGAGGTGACATCCAGTGTGGCCCTAGCACTCCAGAGACTGGCCCGGGCGT
GCACCAGGCGGGGCAAGAGGAAGCACGTCCCCAAGTTGATTGTAGTTGTCCCGTCCTGTGGGCT
GGCTCACTGTCCTGTGTCCTTTGCGTTCCTCGTTTAAGCAAAAGAAGTTAGTAGCTAATTCTAT
CACGAATGTTCTTGTCTGTGTACAGTTTTTAGAACATTACCAAGGATTTGTTTGCTTAGCTGTC
AACAAAAAGAAAACCTGAGGGAGCATTCAGCAAGTCAGTTTGAGATTATTTTTCCTTTTCTACG
TTGGAACGTGCCCCGGAATGTGGCCGTCGGCACACTTCTCAGGACAATGAATCCTTCCTGTTTT
TCTTTTTATGCCACACAGTGCATTGTTTTTCTATCTGCTTGTCTTATTTTTAGAATAATTTAGA
AAAACAACAAAGGCTGTTTTTCCTAATTTTGGCATGAACCCCTTGTTCCAAATGAAGACGGCAT
CGCGAGTGGCTCTGAGGTGTGTCTGCAGTGCCCAGTGTGCTCAGGACCATCGGGGTCTGTCCTG
GGGAAGGCAGGGGTTGGCAGACCCTTGCCTACGTGGTGCCGTCCTGCTGATGTGGTAGGCTAGC
AATATTTTGGTTAAAATCATGTTTGTGACTGTAACCATTTGTATGAATTATT

hide sequence

RefSeq Acc Id:

XM_006251225 ⟹ XP_006251287

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,679,956 - 81,707,331 (+)	NCBI
mRatBN7.2	14	77,455,582 - 77,482,821 (+)	NCBI
Rnor_6.0	14	82,762,145 - 82,789,350 (+)	NCBI
Rnor_5.0	14	83,447,911 - 83,475,152 (+)	NCBI

Sequence:

show sequence

ACGGCGGTGGCCGGTCGCAGGCGGCCGGGCGGAATAGCAGACTGCGCCGAAGCCGCCCCAGGCG
CAGGGCTCGCGGCGGCGGAGAGCGCCGGACTCATCGGGGCCCGCGGCCACCCGCGCCTTTCAAT
GGGCAGCTCGCACTTGCTCAACAAGGGCCTGCCGCTGGGCGTCCGACCTCCCATCATGAACGGG
CCCATGCACCCCCGGCCCCTGGTGGCGCTGCTGGATGGCCGGGACTGCACAGTGGAGATGCCTA
TCCTGAAGGATGTGGCCACAGTAGCCTTCTGTGATGCGCAGTCCACACAGGAGATCCATGAGAA
GGTACTGAATGAGGCAGTGGGCGCCCTGATGTACCATACCATCACACTGACCAGAGAAGATCTG
GAGAAGTTTAAAGCTCTCAGAATCATCGTCCGAATTGGCAGCGGGTTTGACAACATAGACATCA
AGTCAGCTGGTGATCTAGGCATCGCAGTGTGCAATGTACCAGCAGCATCTGTGGAAGAAACAGC
AGACTCCACCCTGTGCCACATTCTGAACCTATACCGACGAACTACCTGGCTACACCAGGCACTT
CGGGAAGGCACTCGGGTCCAGAGTGTAGAGCAGATCCGAGAGGTGGCTTCAGGAGCTGCCAGGA
TCCGTGGAGAGACCTTGGGCATCATTGGACTAGGTCGTGTGGGCCAGGCGGTGGCACTTCGGGC
AAAGGCTTTTGGCTTCAACGTCCTCTTCTATGACCCATACCTATCTGATGGAATCGAGCGGGCC
CTGGGGCTGCAGCGTGTGAGCACACTGCAGGACCTGCTCTTCCACAGTGACTGCGTTACCCTGC
ATTGCGGCCTCAATGAGCACAACCACCACCTCATCAATGACTTCACAGTCAAGCAGATGAGACA
AGGAGCCTTCCTGGTGAACACAGCCCGTGGTGGCCTGGTGGATGAGAAGGCACTAGCCCAGGCC
CTGAAGGAAGGGCGGATCCGTGGCGCAGCGCTGGACGTGCATGAGTCAGAGCCTTTCAGCTTTA
GCCAGGGACCCTTAAAGGATGCACCCAACCTCATCTGCACCCCCCATGCTGCATGGTACAGTGA
GCAGGCGTCCATTGAGATGCGAGAGGAGGCAGCCCGGGAAATCCGACGAGCCATCACAGGCCGG
ATCCCAGATAGCTTGAAAAACTGTGTCAACAAGGACCACCTGACAGCTGCCACCCACTGGGCCA
GCATGGACCCTGCTGTGGTGCACCCTGAGCTCAATGGGGCTGCCTACAGCAGGTACCCTCCAGG
TGTGGTGAGTGTGGCCCCCACTGGCATCCCAGCTGCTGTGGAAGGTATTGTTCCCAGCGCCATG
TCCCTGTCCCATGGCCTGCCCCCTGTGGCCCACCCACCCCACGCTCCTTCTCCTGGCCAGACTG
TCAAGCCTGAGGCGGATAGAGACCATACGACTGACCAGTTGTAGCCTGTGAGGAGCTCTCCAGC
CTTGACACCTGGTGGAGGGAGCTGCACACCCTTGGACCCAAGTGTGCAGAGGTGACATCCAGTG
TGGCCCTAGCACTCCAGAGACTGGCCCGGGCGTGCACCAGGCGGGGCAAGAGGAAGCACGTCCC
CAAGTTGATTGTAGTTGTCCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTCCTC
GTTTAAGCAAAAGAAGTTAGTAGCTAATTCTATCACGAATGTTCTTGTCTGTGTACAGTTTTTA
GAACATTACCAAGGATTTGTTTGCTTAGCTGTCAACAAAAAGAAAACCTGAGGGAGCATTCAGC
AAGTCAGTTTGAGATTATTTTTCCTTTTCTACGTTGGAACGTGCCCCGGAATGTGGCCGTCGGC
ACACTTCTCAGGACAATGAATCCTTCCTGTTTTTCTTTTTATGCCACACAGTGCATTGTTTTTC
TATCTGCTTGTCTTATTTTTAGAATAATTTAGAAAAACAACAAAGGCTGTTTTTCCTAATTTTG
GCATGAACCCCTTGTTCCAAATGAAGACGGCATCGCGAGTGGCTCTGAGGTGTGTCTGCAGTGC
CCAGTGTGCTCAGGACCATCGGGGTCTGTCCTGGGGAAGGCAGGGGTTGGCAGACCCTTGCCTA
CGTGGTGCCGTCCTGCTGATGTGGTAGGCTAGCAATATTTTGGTTAAAATCATGTTTGTGACTG
TAACCATTTGTATGAATTATTTTAAAGAAATAAAAATCCCAGAAAGAGCCGGCA

hide sequence

RefSeq Acc Id:

XM_006251226 ⟹ XP_006251288

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,679,956 - 81,707,331 (+)	NCBI
mRatBN7.2	14	77,455,581 - 77,482,821 (+)	NCBI
Rnor_6.0	14	82,762,144 - 82,789,350 (+)	NCBI
Rnor_5.0	14	83,447,911 - 83,475,152 (+)	NCBI

Sequence:

show sequence

CACGGCGGTGGCCGGTCGCAGGCGGCCGGGCGGAATAGCAGACTGCGCCGAAGCCGCCCCAGGC
GCAGGGCTCGCGGCGGCGGAGAGCGCCGGACTCATCGGGGCCCGCGGCCACCCGCGCCTTTCAA
TGGGCAGCTCGCACTTGCTCAACAAGGGCCTGCCGCTGGGCGTCCGACCTCCCATCATGAACGG
GCCCATGCACCCCCGGCCCCTGGTGGCGCTGCTGGATGGCCGGGACTGCACAGTGGAGATGCCT
ATCCTGAAGGATGTGGCCACAGTAGCCTTCTGTGATGCGCAGTCCACACAGGAGATCCATGAGA
AGGTACTGAATGAGGCAGTGGGCGCCCTGATGTACCATACCATCACACTGACCAGAGAAGATCT
GGAGAAGTTTAAAGCTCTCAGAATCATCGTCCGAATTGGCAGCGGGTTTGACAACATAGACATC
AAGTCAGCTGGTGATCTAGGCATCGCAGTGTGCAATGTACCAGCAGCATCTGTGGAAGAAACAG
CAGACTCCACCCTGTGCCACATTCTGAACCTATACCGACGAACTACCTGGCTACACCAGGCACT
TCGGGAAGGCACTCGGGTCCAGAGTGTAGAGCAGATCCGAGAGGTGGCTTCAGGAGCTGCCAGG
ATCCGTGGAGAGACCTTGGGCATCATTGGACTAGGTCGTGTGGGCCAGGCGGTGGCACTTCGGG
CAAAGGCTTTTGGCTTCAACGTCCTCTTCTATGACCCATACCTATCTGATGGAATCGAGCGGGC
CCTGGGGCTGCAGCGTGTGAGCACACTGCAGGACCTGCTCTTCCACAGTGACTGCGTTACCCTG
CATTGCGGCCTCAATGAGCACAACCACCACCTCATCAATGACTTCACAGTCAAGCAGATGAGAC
AAGGAGCCTTCCTGGTGAACACAGCCCGTGGTGGCCTGGTGGATGAGAAGGCACTAGCCCAGGC
CCTGAAGGAAGGGCGGATCCGTGGCGCAGCGCTGGACGTGCATGAGTCAGAGCCTTTCAGCTTT
AGCCAGGGACCCTTAAAGGATGCACCCAACCTCATCTGCACCCCCCATGCTGCATGGTACAGTG
AGCAGGCGTCCATTGAGATGCGAGAGGAGGCAGCCCGGGAAATCCGACGAGCCATCACAGGCCG
GATCCCAGATAGCTTGAAAAACTGTGTCAACAAGGACCACCTGACAGCTGCCACCCACTGGGCC
AGCATGGACCCTGCTGTGGTGCACCCTGAGCTCAATGGGGCTGCCTACAGGTACCCTCCAGGTG
TGGTGAGTGTGGCCCCCACTGGCATCCCAGCTGCTGTGGAAGGTATTGTTCCCAGCGCCATGTC
CCTGTCCCATGGCCTGCCCCCTGTGGCCCACCCACCCCACGCTCCTTCTCCTGGCCAGACTGTC
AAGCCTGAGGCGGATAGAGACCATACGACTGACCAGTTGTAGCCTGTGAGGAGCTCTCCAGCCT
TGACACCTGGTGGAGGGAGCTGCACACCCTTGGACCCAAGTGTGCAGAGGTGACATCCAGTGTG
GCCCTAGCACTCCAGAGACTGGCCCGGGCGTGCACCAGGCGGGGCAAGAGGAAGCACGTCCCCA
AGTTGATTGTAGTTGTCCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTCCTCGT
TTAAGCAAAAGAAGTTAGTAGCTAATTCTATCACGAATGTTCTTGTCTGTGTACAGTTTTTAGA
ACATTACCAAGGATTTGTTTGCTTAGCTGTCAACAAAAAGAAAACCTGAGGGAGCATTCAGCAA
GTCAGTTTGAGATTATTTTTCCTTTTCTACGTTGGAACGTGCCCCGGAATGTGGCCGTCGGCAC
ACTTCTCAGGACAATGAATCCTTCCTGTTTTTCTTTTTATGCCACACAGTGCATTGTTTTTCTA
TCTGCTTGTCTTATTTTTAGAATAATTTAGAAAAACAACAAAGGCTGTTTTTCCTAATTTTGGC
ATGAACCCCTTGTTCCAAATGAAGACGGCATCGCGAGTGGCTCTGAGGTGTGTCTGCAGTGCCC
AGTGTGCTCAGGACCATCGGGGTCTGTCCTGGGGAAGGCAGGGGTTGGCAGACCCTTGCCTACG
TGGTGCCGTCCTGCTGATGTGGTAGGCTAGCAATATTTTGGTTAAAATCATGTTTGTGACTGTA
ACCATTTGTATGAATTATTTTAAAGAAATAAAAATCCCAGAAAGAGCCGGCA

hide sequence

RefSeq Acc Id:

XM_006251227 ⟹ XP_006251289

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,679,956 - 81,707,331 (+)	NCBI
mRatBN7.2	14	77,455,582 - 77,482,821 (+)	NCBI
Rnor_6.0	14	82,762,145 - 82,789,350 (+)	NCBI
Rnor_5.0	14	83,447,911 - 83,475,152 (+)	NCBI

Sequence:

show sequence

ACGGCGGTGGCCGGTCGCAGGCGGCCGGGCGGAATAGCAGACTGCGCCGAAGCCGCCCCAGGCG
CAGGGCTCGCGGCGGCGGAGAGCGCCGGACTCATCGGGGCCCGCGGCCACCCGCGCCTTTCAAT
GGGCAGCTCGCACTTGCTCAACAAGGGCCTGCCGCTGGGCGTCCGACCTCCCATCATGAACGGG
CCCATGCACCCCCGGCCCCTGGTGGCGCTGCTGGATGGCCGGGACTGCACAGTGGAGATGCCTA
TCCTGAAGGATGTGGCCACAGTAGCCTTCTGTGATGCGCAGTCCACACAGGAGATCCATGAGAA
GGTACTGAATGAGGCAGTGGGCGCCCTGATGTACCATACCATCACACTGACCAGAGAAGATCTG
GAGAAGTTTAAAGCTCTCAGAATCATCGTCCGAATTGGCAGCGGGTTTGACAACATAGACATCA
AGTCAGCTGGTGATCTAGGCATCGCAGTGTGCAATGTACCAGCAGCATCTGTGGAAGAAACAGC
AGACTCCACCCTGTGCCACATTCTGAACCTATACCGACGAACTACCTGGCTACACCAGGCACTT
CGGGAAGGCACTCGGGTCCAGAGTGTAGAGCAGATCCGAGAGGTGGCTTCAGGAGCTGCCAGGA
TCCGTGGAGAGACCTTGGGCATCATTGGACTAGGTCGTGTGGGCCAGGCGGTGGCACTTCGGGC
AAAGGCTTTTGGCTTCAACGTCCTCTTCTATGACCCATACCTATCTGATGGAATCGAGCGGGCC
CTGGGGCTGCAGCGTGTGAGCACACTGCAGGACCTGCTCTTCCACAGTGACTGCGTTACCCTGC
ATTGCGGCCTCAATGAGCACAACCACCACCTCATCAATGACTTCACAGTCAAGCAGATGAGACA
AGGAGCCTTCCTGGTGAACACAGCCCGTGGTGGCCTGGTGGATGAGAAGGCACTAGCCCAGGCC
CTGAAGGAAGGGCGGATCCGTGGCGCAGCGCTGGACGTGCATGAGTCAGAGCCTTTCAGCTTTA
GCCAGGGACCCTTAAAGGATGCACCCAACCTCATCTGCACCCCCCATGCTGCATGGTACAGTGA
GCAGGCGTCCATTGAGATGCGAGAGGAGGCAGCCCGGGAAATCCGACGAGCCATCACAGGCCGG
ATCCCAGATAGCTTGAAAAACTGTGTCAACAAGGACCACCTGACAGCTGCCACCCACTGGGCCA
GCATGGACCCTGCTGTGGTGCACCCTGAGCTCAATGGGGCTGCCTACAGCAGGTACCCTCCAGG
TGTGGTGAGTGTGGCCCCCACTGGCATCCCAGCTGCTGTGGAAGACTGTCAAGCCTGAGGCGGA
TAGAGACCATACGACTGACCAGTTGTAGCCTGTGAGGAGCTCTCCAGCCTTGACACCTGGTGGA
GGGAGCTGCACACCCTTGGACCCAAGTGTGCAGAGGTGACATCCAGTGTGGCCCTAGCACTCCA
GAGACTGGCCCGGGCGTGCACCAGGCGGGGCAAGAGGAAGCACGTCCCCAAGTTGATTGTAGTT
GTCCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTCCTCGTTTAAGCAAAAGAAG
TTAGTAGCTAATTCTATCACGAATGTTCTTGTCTGTGTACAGTTTTTAGAACATTACCAAGGAT
TTGTTTGCTTAGCTGTCAACAAAAAGAAAACCTGAGGGAGCATTCAGCAAGTCAGTTTGAGATT
ATTTTTCCTTTTCTACGTTGGAACGTGCCCCGGAATGTGGCCGTCGGCACACTTCTCAGGACAA
TGAATCCTTCCTGTTTTTCTTTTTATGCCACACAGTGCATTGTTTTTCTATCTGCTTGTCTTAT
TTTTAGAATAATTTAGAAAAACAACAAAGGCTGTTTTTCCTAATTTTGGCATGAACCCCTTGTT
CCAAATGAAGACGGCATCGCGAGTGGCTCTGAGGTGTGTCTGCAGTGCCCAGTGTGCTCAGGAC
CATCGGGGTCTGTCCTGGGGAAGGCAGGGGTTGGCAGACCCTTGCCTACGTGGTGCCGTCCTGC
TGATGTGGTAGGCTAGCAATATTTTGGTTAAAATCATGTTTGTGACTGTAACCATTTGTATGAA
TTATTTTAAAGAAATAAAAATCCCAGAAAGAGCCGGCA

hide sequence

RefSeq Acc Id:

XM_006251228 ⟹ XP_006251290

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,679,956 - 81,707,331 (+)	NCBI
mRatBN7.2	14	77,455,581 - 77,482,821 (+)	NCBI
Rnor_6.0	14	82,762,145 - 82,788,630 (+)	NCBI
Rnor_5.0	14	83,447,911 - 83,475,152 (+)	NCBI

Sequence:

show sequence

ACGGCGGTGGCCGGTCGCAGGCGGCCGGGCGGAATAGCAGACTGCGCCGAAGCCGCCCCAGGCG
CAGGGCTCGCGGCGGCGGAGAGCGCCGGACTCATCGGGGCCCGCGGCCACCCGCGCCTTTCAAT
GGGCAGCTCGCACTTGCTCAACAAGGGCCTGCCGCTGGGCGTCCGACCTCCCATCATGAACGGG
CCCATGCACCCCCGGCCCCTGGTGGCGCTGCTGGATGGCCGGGACTGCACAGTGGAGATGCCTA
TCCTGAAGGATGTGGCCACAGTAGCCTTCTGTGATGCGCAGTCCACACAGGAGATCCATGAGAA
GGTACTGAATGAGGCAGTGGGCGCCCTGATGTACCATACCATCACACTGACCAGAGAAGATCTG
GAGAAGTTTAAAGCTCTCAGAATCATCGTCCGAATTGGCAGCGGGTTTGACAACATAGACATCA
AGTCAGCTGGTGATCTAGGCATCGCAGTGTGCAATGTACCAGCAGCATCTGTGGAAGAAACAGC
AGACTCCACCCTGTGCCACATTCTGAACCTATACCGACGAACTACCTGGCTACACCAGGCACTT
CGGGAAGGCACTCGGGTCCAGAGTGTAGAGCAGATCCGAGAGGTGGCTTCAGGAGCTGCCAGGA
TCCGTGGAGAGACCTTGGGCATCATTGGACTAGGTCGTGTGGGCCAGGCGGTGGCACTTCGGGC
AAAGGCTTTTGGCTTCAACGTCCTCTTCTATGACCCATACCTATCTGATGGAATCGAGCGGGCC
CTGGGGCTGCAGCGTGTGAGCACACTGCAGGACCTGCTCTTCCACAGTGACTGCGTTACCCTGC
ATTGCGGCCTCAATGAGCACAACCACCACCTCATCAATGACTTCACAGTCAAGCAGATGAGACA
AGGAGCCTTCCTGGTGAACACAGCCCGTGGTGGCCTGGTGGATGAGAAGGCACTAGCCCAGGCC
CTGAAGGAAGGGCGGATCCGTGGCGCAGCGCTGGACGTGCATGAGTCAGAGCCTTTCAGCTTTA
GCCAGGGACCCTTAAAGGATGCACCCAACCTCATCTGCACCCCCCATGCTGCATGGTACAGTGA
GCAGGCGTCCATTGAGATGCGAGAGGAGGCAGCCCGGGAAATCCGACGAGCCATCACAGGCCGG
ATCCCAGATAGCTTGAAAAACTGTGTCAACAAGGACCACCTGACAGCTGCCACCCACTGGGCCA
GCATGGACCCTGCTGTGGTGCACCCTGAGCTCAATGGGGCTGCCTACAGGTACCCTCCAGGTGT
GGTGAGTGTGGCCCCCACTGGCATCCCAGCTGCTGTGGAAGACTGTCAAGCCTGAGGCGGATAG
AGACCATACGACTGACCAGTTGTAGCCTGTGAGGAGCTCTCCAGCCTTGACACCTGGTGGAGGG
AGCTGCACACCCTTGGACC

hide sequence

RefSeq Acc Id:

XM_017599147 ⟹ XP_017454636

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,680,403 - 81,707,331 (+)	NCBI
mRatBN7.2	14	77,455,975 - 77,482,821 (+)	NCBI
Rnor_6.0	14	82,762,450 - 82,789,350 (+)	NCBI

Sequence:

show sequence

TGCGCATGCGCGAACTGCTGTACAGGCGTGCGCGTGCGTGTGCGCGTCCCTATTTTCCGCTGCC
CGCTCGCGACTTGCGCAGTAAGACTTTGAACCCGACGCAGGCTTCAGTGGCTGCTGTGGAGCAG
AAGCCTGAGAGCTTTGGTTGGAGACAATAAGACGTGGGATGAGGCTCCGTGACAGAACGCGGTT
CGGCCTGGGGATTCTGAAGACAAAAAGCTTTGGACAGGCGAATTCATGGTCGTGGAAACCCCGC
CCCAATTAAGCAATGTCAGGCGTCCGACCTCCCATCATGAACGGGCCCATGCACCCCCGGCCCC
TGGTGGCGCTGCTGGATGGCCGGGACTGCACAGTGGAGATGCCTATCCTGAAGGATGTGGCCAC
AGTAGCCTTCTGTGATGCGCAGTCCACACAGGAGATCCATGAGAAGGTACTGAATGAGGCAGTG
GGCGCCCTGATGTACCATACCATCACACTGACCAGAGAAGATCTGGAGAAGTTTAAAGCTCTCA
GAATCATCGTCCGAATTGGCAGCGGGTTTGACAACATAGACATCAAGTCAGCTGGTGATCTAGG
CATCGCAGTGTGCAATGTACCAGCAGCATCTGTGGAAGAAACAGCAGACTCCACCCTGTGCCAC
ATTCTGAACCTATACCGACGAACTACCTGGCTACACCAGGCACTTCGGGAAGGCACTCGGGTCC
AGAGTGTAGAGCAGATCCGAGAGGTGGCTTCAGGAGCTGCCAGGATCCGTGGAGAGACCTTGGG
CATCATTGGACTAGGTCGTGTGGGCCAGGCGGTGGCACTTCGGGCAAAGGCTTTTGGCTTCAAC
GTCCTCTTCTATGACCCATACCTATCTGATGGAATCGAGCGGGCCCTGGGGCTGCAGCGTGTGA
GCACACTGCAGGACCTGCTCTTCCACAGTGACTGCGTTACCCTGCATTGCGGCCTCAATGAGCA
CAACCACCACCTCATCAATGACTTCACAGTCAAGCAGATGAGACAAGGAGCCTTCCTGGTGAAC
ACAGCCCGTGGTGGCCTGGTGGATGAGAAGGCACTAGCCCAGGCCCTGAAGGAAGGGCGGATCC
GTGGCGCAGCGCTGGACGTGCATGAGTCAGAGCCTTTCAGCTTTAGCCAGGGACCCTTAAAGGA
TGCACCCAACCTCATCTGCACCCCCCATGCTGCATGGTACAGTGAGCAGGCGTCCATTGAGATG
CGAGAGGAGGCAGCCCGGGAAATCCGACGAGCCATCACAGGCCGGATCCCAGATAGCTTGAAAA
ACTGTGTCAACAAGGACCACCTGACAGCTGCCACCCACTGGGCCAGCATGGACCCTGCTGTGGT
GCACCCTGAGCTCAATGGGGCTGCCTACAGCAGGTACCCTCCAGGTGTGGTGAGTGTGGCCCCC
ACTGGCATCCCAGCTGCTGTGGAAGGTATTGTTCCCAGCGCCATGTCCCTGTCCCATGGCCTGC
CCCCTGTGGCCCACCCACCCCACGCTCCTTCTCCTGGCCAGACTGTCAAGCCTGAGGCGGATAG
AGACCATACGACTGACCAGTTGTAGCCTGTGAGGAGCTCTCCAGCCTTGACACCTGGTGGAGGG
AGCTGCACACCCTTGGACCCAAGTGTGCAGAGGTGACATCCAGTGTGGCCCTAGCACTCCAGAG
ACTGGCCCGGGCGTGCACCAGGCGGGGCAAGAGGAAGCACGTCCCCAAGTTGATTGTAGTTGTC
CCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTCCTCGTTTAAGCAAAAGAAGTTA
GTAGCTAATTCTATCACGAATGTTCTTGTCTGTGTACAGTTTTTAGAACATTACCAAGGATTTG
TTTGCTTAGCTGTCAACAAAAAGAAAACCTGAGGGAGCATTCAGCAAGTCAGTTTGAGATTATT
TTTCCTTTTCTACGTTGGAACGTGCCCCGGAATGTGGCCGTCGGCACACTTCTCAGGACAATGA
ATCCTTCCTGTTTTTCTTTTTATGCCACACAGTGCATTGTTTTTCTATCTGCTTGTCTTATTTT
TAGAATAATTTAGAAAAACAACAAAGGCTGTTTTTCCTAATTTTGGCATGAACCCCTTGTTCCA
AATGAAGACGGCATCGCGAGTGGCTCTGAGGTGTGTCTGCAGTGCCCAGTGTGCTCAGGACCAT
CGGGGTCTGTCCTGGGGAAGGCAGGGGTTGGCAGACCCTTGCCTACGTGGTGCCGTCCTGCTGA
TGTGGTAGGCTAGCAATATTTTGGTTAAAATCATGTTTGTGACTGTAACCATTTGTATGAATTA
TTTTAAAGAAATAAAAATCCCAGAAAGAGCCGGCA

hide sequence

RefSeq Acc Id:

XM_063272993 ⟹ XP_063129063

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,682,301 - 81,707,331 (+)	NCBI

RefSeq Acc Id:

XM_063272994 ⟹ XP_063129064

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,680,416 - 81,707,331 (+)	NCBI

RefSeq Acc Id:

XM_063272996 ⟹ XP_063129066

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,682,340 - 81,707,331 (+)	NCBI

RefSeq Acc Id:

XM_063272997 ⟹ XP_063129067

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,680,417 - 81,707,331 (+)	NCBI

RefSeq Acc Id:

XM_063272998 ⟹ XP_063129068

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,680,416 - 81,707,331 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_062074	(Get FASTA)	NCBI Sequence Viewer
	XP_006251287	(Get FASTA)	NCBI Sequence Viewer
	XP_006251288	(Get FASTA)	NCBI Sequence Viewer
	XP_006251289	(Get FASTA)	NCBI Sequence Viewer
	XP_006251290	(Get FASTA)	NCBI Sequence Viewer
	XP_017454636	(Get FASTA)	NCBI Sequence Viewer
	XP_063129063	(Get FASTA)	NCBI Sequence Viewer
	XP_063129064	(Get FASTA)	NCBI Sequence Viewer
	XP_063129066	(Get FASTA)	NCBI Sequence Viewer
	XP_063129067	(Get FASTA)	NCBI Sequence Viewer
	XP_063129068	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC79427	(Get FASTA)	NCBI Sequence Viewer
	AAH78778	(Get FASTA)	NCBI Sequence Viewer
	EDM00131	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000054738.4
	ENSRNOP00000062945.3
	ENSRNOP00000080240.1
	ENSRNOP00000081185.1
GenBank Protein	Q9Z2F5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_062074 ⟸ NM_019201

- UniProtKB:

Q9Z2F5 (UniProtKB/Swiss-Prot), A6IK67 (UniProtKB/TrEMBL), A0A8I5ZSG1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSGVRPPIMNGPMHPRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALM
YHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNL
YRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFY
DPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARG
GLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEA
AREIRRAITGRIPDSLKNCVNKDHLTAATHWASMDPAVVHPELNGAAYSRYPPGVVSVAPTGIP
AAVEGIVPSAMSLSHGLPPVAHPPHAPSPGQTVKPEADRDHTTDQL

hide sequence

RefSeq Acc Id:	XP_006251287 ⟸ XM_006251225
- Peptide Label:	isoform X1
- UniProtKB:	A0A0H2UI20 (UniProtKB/TrEMBL), A0A8I5ZSG1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGSSHLLNKGLPLGVRPPIMNGPMHPRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHE KVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEET ADSTLCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALR AKAFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMR QGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYS EQASIEMREEAAREIRRAITGRIPDSLKNCVNKDHLTAATHWASMDPAVVHPELNGAAYSRYPP GVVSVAPTGIPAAVEGIVPSAMSLSHGLPPVAHPPHAPSPGQTVKPEADRDHTTDQL hide sequence

RefSeq Acc Id:	XP_006251289 ⟸ XM_006251227
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZSG1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGSSHLLNKGLPLGVRPPIMNGPMHPRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHE KVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEET ADSTLCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALR AKAFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMR QGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYS EQASIEMREEAAREIRRAITGRIPDSLKNCVNKDHLTAATHWASMDPAVVHPELNGAAYSRYPP GVVSVAPTGIPAAVEDCQA hide sequence

RefSeq Acc Id:	XP_006251288 ⟸ XM_006251226
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZSG1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGSSHLLNKGLPLGVRPPIMNGPMHPRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHE KVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEET ADSTLCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALR AKAFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMR QGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYS EQASIEMREEAAREIRRAITGRIPDSLKNCVNKDHLTAATHWASMDPAVVHPELNGAAYRYPPG VVSVAPTGIPAAVEGIVPSAMSLSHGLPPVAHPPHAPSPGQTVKPEADRDHTTDQL hide sequence

RefSeq Acc Id:	XP_006251290 ⟸ XM_006251228
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I5ZSG1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGSSHLLNKGLPLGVRPPIMNGPMHPRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHE KVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEET ADSTLCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALR AKAFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMR QGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYS EQASIEMREEAAREIRRAITGRIPDSLKNCVNKDHLTAATHWASMDPAVVHPELNGAAYRYPPG VVSVAPTGIPAAVEDCQA hide sequence

RefSeq Acc Id:	XP_017454636 ⟸ XM_017599147
- Peptide Label:	isoform X3
- UniProtKB:	Q9Z2F5 (UniProtKB/Swiss-Prot), A6IK67 (UniProtKB/TrEMBL), A0A8I5ZSG1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSGVRPPIMNGPMHPRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALM YHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNL YRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFY DPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARG GLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEA AREIRRAITGRIPDSLKNCVNKDHLTAATHWASMDPAVVHPELNGAAYSRYPPGVVSVAPTGIP AAVEGIVPSAMSLSHGLPPVAHPPHAPSPGQTVKPEADRDHTTDQL hide sequence

Ensembl Acc Id:

ENSRNOP00000054738 ⟸ ENSRNOT00000057929

Ensembl Acc Id:

ENSRNOP00000062945 ⟸ ENSRNOT00000065393

Ensembl Acc Id:

ENSRNOP00000080240 ⟸ ENSRNOT00000112665

Ensembl Acc Id:

ENSRNOP00000081185 ⟸ ENSRNOT00000119292

RefSeq Acc Id:	XP_063129064 ⟸ XM_063272994
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5ZSG1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129068 ⟸ XM_063272998
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I5ZSG1 (UniProtKB/TrEMBL), Q6AZ26 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129067 ⟸ XM_063272997
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I5ZSG1 (UniProtKB/TrEMBL), F7FG31 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129063 ⟸ XM_063272993
- Peptide Label:	isoform X3
- UniProtKB:	Q9Z2F5 (UniProtKB/Swiss-Prot), A0A8I5ZSG1 (UniProtKB/TrEMBL), A6IK67 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129066 ⟸ XM_063272996
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5ZSG1 (UniProtKB/TrEMBL)

Protein Domains

D-isomer specific 2-hydroxyacid dehydrogenase D-isomer specific 2-hydroxyacid dehydrogenase NAD-

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9Z2F5-F1-model_v2	AlphaFold	Q9Z2F5	1-430	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699418

Promoter ID:

EPDNEW_R9938

Type:

initiation region

Name:

Ctbp1_1

Description:

C-terminal binding protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	82,762,097 - 82,762,157	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:2441	AgrOrtholog
BioCyc Gene	G2FUF-15254	BioCyc
Ensembl Genes	ENSRNOG00000005428	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000057929.5	UniProtKB/TrEMBL
	ENSRNOT00000065393.3	UniProtKB/TrEMBL
	ENSRNOT00000112665.1	UniProtKB/Swiss-Prot
	ENSRNOT00000119292.1	UniProtKB/TrEMBL
Gene3D-CATH	NAD(P)-binding Rossmann-like Domain	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7108845	IMAGE-MGC_LOAD
InterPro	CtBP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CTBP_dehydrogenase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	D-isomer_2_OHA_DH_cat_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	D-isomer_DH_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	D-isomer_DH_CS1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	D-isomer_DH_NAD-bd	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	NAD(P)-bd_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:29382	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:93318	IMAGE-MGC_LOAD
NCBI Gene	29382	ENTREZGENE
PANTHER	C-TERMINAL-BINDING PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	C-TERMINAL-BINDING PROTEIN 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	2-Hacid_dh	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	2-Hacid_dh_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Ctbp1	PhenoGen
PROSITE	D_2_HYDROXYACID_DH_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	D_2_HYDROXYACID_DH_3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000005428	RatGTEx
Superfamily-SCOP	Formate/glycerate dehydrogenase catalytic domain-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF51735	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR	TC205585
UniProt	A0A0H2UI20	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZSG1	ENTREZGENE, UniProtKB/TrEMBL
	A6IK67	ENTREZGENE, UniProtKB/TrEMBL
	CTBP1_RAT	UniProtKB/Swiss-Prot
	F7FG31	ENTREZGENE, UniProtKB/TrEMBL
	Q6AZ26	ENTREZGENE, UniProtKB/TrEMBL
	Q9Z2F5	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-06-10	Ctbp1	C-terminal binding protein 1			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_cellular_localization	protein is found in cytosol and may be associated with Golgi apparatus	69822
gene_expression	expressed in brain	69822
gene_physical_interaction	interacts with a bipartite motif located in the C- terminus of viral EBNA3A protein	1298829
gene_physical_interaction	binds GTP and interacts with beta gamma subunit comples of G proteins	1298827
gene_process	negatively controls tubulation of Golgi structures after treatment with brefeldin A	69822
gene_process	acts as a transcriptional co-repressor	1298829
gene_process	may function in development, cell cycle regulation and cellular transformation	1298829
gene_protein	protein is ADP-ribosylated after exposure of cells to brefeldin A	69822

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)