GDB:437189 Marker Search Result - Rat Genome Database

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Marker: GDB:437189

Symbol: GDB:437189
Previously known as:
RGD ID: 5500398
Expected Size: 430 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21497,517,490 - 97,517,920 (+)MAPPERmRatBN7.2
Rnor_6.014108,306,182 - 108,306,611NCBIRnor6.0
Rnor_5.014105,142,039 - 105,142,468UniSTSRnor5.0
RGSC_v3.414104,467,365 - 104,467,794UniSTSRGSC3.4
Celera1496,494,461 - 96,494,890UniSTS
Cytogenetic Map14p22UniSTS
Cytogenetic Map14q22UniSTS
Is Marker For: Genes:   Dck   Sanbr   Dck-ps1  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer ATCGCTGCAGGGAAGTCAAC
Reverse Primer ATCCAATTCAAGGCTTTGGCC
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1305110SanbrSANT and BTB domain regulator of CSR149751665297585955Rat
1595838Dck-ps1deoxycytidine kinase, pseudogene 1149751710897518402Rat

Nucleotide Sequences
RefSeq Transcripts NM_024158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide L33894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 305579 UniSTS
  364218 UniSTS
  79127 UniSTS
UniSTS 157241 UniSTS