Wdpcp (WD repeat containing planar cell polarity effector) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Wdpcp (WD repeat containing planar cell polarity effector) Rattus norvegicus
Analyze
Symbol: Wdpcp
Name: WD repeat containing planar cell polarity effector
RGD ID: 1309501
Description: Predicted to be involved in several processes, including cilium assembly; regulation of embryonic cell shape; and septin cytoskeleton organization. Predicted to act upstream of or within several processes, including embryonic digit morphogenesis; podocyte cell migration; and sensory organ morphogenesis. Predicted to be located in axoneme. Predicted to be active in axonemal basal plate. Predicted to colocalize with apical plasma membrane and cell cortex. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome 15 and congenital heart defects, hamartomas of tongue, and polysyndactyly. Orthologous to human WDPCP (WD repeat containing planar cell polarity effector); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical LOC305552; hypothetical protein LOC305552; LOC305552; RGD1309501; WD repeat-containing and planar cell polarity effector protein fritz homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21495,645,955 - 95,977,120 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1495,646,038 - 95,977,113 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1499,998,307 - 100,329,037 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.014101,238,649 - 101,569,383 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01497,712,185 - 98,042,918 (+)NCBIRnor_WKY
Rnor_6.014106,393,959 - 106,759,511 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14106,393,959 - 106,759,505 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014106,464,351 - 106,823,523 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414102,274,144 - 102,612,376 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114102,385,822 - 102,631,969 (+)NCBI
Celera1494,655,473 - 94,975,636 (+)NCBICelera
Cytogenetic Map14q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:24302887   PMID:27158779  


Genomics

Comparative Map Data
Wdpcp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21495,645,955 - 95,977,120 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1495,646,038 - 95,977,113 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1499,998,307 - 100,329,037 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.014101,238,649 - 101,569,383 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01497,712,185 - 98,042,918 (+)NCBIRnor_WKY
Rnor_6.014106,393,959 - 106,759,511 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14106,393,959 - 106,759,505 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014106,464,351 - 106,823,523 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414102,274,144 - 102,612,376 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114102,385,822 - 102,631,969 (+)NCBI
Celera1494,655,473 - 94,975,636 (+)NCBICelera
Cytogenetic Map14q22NCBI
WDPCP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38263,119,559 - 63,840,826 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl263,119,559 - 63,827,843 (-)EnsemblGRCh38hg38GRCh38
GRCh37263,346,694 - 63,815,611 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36263,202,022 - 63,669,355 (-)NCBINCBI36Build 36hg18NCBI36
Celera263,193,063 - 63,660,892 (-)NCBICelera
Cytogenetic Map2p15NCBI
HuRef263,087,448 - 63,556,897 (-)NCBIHuRef
CHM1_1263,278,766 - 63,746,004 (-)NCBICHM1_1
T2T-CHM13v2.0263,126,634 - 63,596,131 (-)NCBIT2T-CHM13v2.0
Wdpcp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391121,521,969 - 21,848,686 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1121,522,235 - 21,848,989 (+)EnsemblGRCm39 Ensembl
GRCm381121,571,969 - 21,898,687 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1121,572,235 - 21,898,989 (+)EnsemblGRCm38mm10GRCm38
MGSCv371121,472,284 - 21,798,689 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361121,472,284 - 21,798,689 (+)NCBIMGSCv36mm8
Celera1123,720,548 - 24,045,720 (+)NCBICelera
Cytogenetic Map11A3.1NCBI
cM Map1113.9NCBI
Wdpcp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542420,723,592 - 21,114,801 (+)NCBIChiLan1.0ChiLan1.0
WDPCP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A64,323,118 - 64,785,322 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A64,325,379 - 64,785,256 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A63,180,279 - 63,658,804 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
WDPCP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11062,894,818 - 63,316,555 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1062,877,527 - 63,316,345 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1062,782,163 - 63,206,565 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01063,901,715 - 64,326,640 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1063,884,301 - 64,325,262 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11063,584,532 - 64,009,171 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01063,888,001 - 64,317,400 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01064,185,201 - 64,609,983 (-)NCBIUU_Cfam_GSD_1.0
Wdpcp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629220,000,470 - 20,334,532 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364918,239,284 - 8,485,636 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049364918,238,644 - 8,749,172 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDPCP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl378,268,922 - 78,856,893 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1378,435,154 - 78,726,313 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2382,738,390 - 82,792,999 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WDPCP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11443,425,405 - 43,896,015 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1443,526,525 - 43,898,300 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604567,944,581 - 68,435,636 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdpcp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247629,970,904 - 10,303,046 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247629,901,021 - 10,303,217 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Wdpcp
1345 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:9
Count of miRNA genes:9
Interacting mature miRNAs:9
Transcripts:ENSRNOT00000011567
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532395876975Rat
631213Bw60Body weight QTL604.51retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)147995092195876975Rat
4889951Bss92Bone structure and strength QTL 923.9tibia area (VT:1000281)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)148205747195876975Rat
1582201Sffal2Serum free fatty acids level QTL 240.0002blood free fatty acid amount (VT:0001553)serum free fatty acids level (CMO:0000547)149255388695876975Rat

Markers in Region
D14Rat22  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21495,876,805 - 95,876,975 (+)MAPPERmRatBN7.2
Rnor_6.014106,641,587 - 106,641,756NCBIRnor6.0
Rnor_5.014106,704,868 - 106,705,037UniSTSRnor5.0
RGSC_v3.414102,509,228 - 102,509,397UniSTSRGSC3.4
RGSC_v3.414102,509,227 - 102,509,397RGDRGSC3.4
RGSC_v3.114102,528,439 - 102,528,608RGD
Celera1494,880,114 - 94,880,283UniSTS
RH 3.4 Map14758.0RGD
RH 3.4 Map14758.0UniSTS
RH 2.0 Map14823.7RGD
SHRSP x BN Map1466.2099RGD
FHH x ACI Map1475.96RGD
Cytogenetic Map14q22UniSTS
AW532630  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21495,929,010 - 95,929,192 (+)MAPPERmRatBN7.2
Rnor_6.014106,711,951 - 106,712,132NCBIRnor6.0
Rnor_5.014106,776,743 - 106,776,924UniSTSRnor5.0
RGSC_v3.414102,566,312 - 102,566,493UniSTSRGSC3.4
Celera1494,935,850 - 94,936,031UniSTS
RH 3.4 Map14751.4UniSTS
Cytogenetic Map14q22UniSTS
AU049356  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21495,810,482 - 95,810,637 (+)MAPPERmRatBN7.2
Rnor_6.014106,563,499 - 106,563,653NCBIRnor6.0
Rnor_5.014106,630,158 - 106,630,312UniSTSRnor5.0
RGSC_v3.414102,441,095 - 102,441,249UniSTSRGSC3.4
Celera1494,813,901 - 94,814,055UniSTS
Cytogenetic Map14q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 6 6 18 12 22 10
Low 3 43 51 41 13 41 8 11 56 23 19 1 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001127537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005492977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC161962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000092168   ⟹   ENSRNOP00000070201
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1495,646,181 - 95,977,113 (+)Ensembl
Rnor_6.0 Ensembl14106,393,959 - 106,759,505 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099293   ⟹   ENSRNOP00000076430
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1495,646,237 - 95,967,975 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000101695   ⟹   ENSRNOP00000078004
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1495,646,038 - 95,977,113 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000107912   ⟹   ENSRNOP00000090509
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1495,646,237 - 95,969,061 (+)Ensembl
RefSeq Acc Id: NM_001127537   ⟹   NP_001121009
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21495,646,237 - 95,977,119 (+)NCBI
Rnor_6.014106,393,959 - 106,759,511 (+)NCBI
Rnor_5.014106,464,351 - 106,823,523 (+)NCBI
RGSC_v3.414102,274,144 - 102,612,376 (+)RGD
Celera1494,655,473 - 94,975,636 (+)RGD
Sequence:
RefSeq Acc Id: XM_039092074   ⟹   XP_038948002
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21495,645,955 - 95,977,120 (+)NCBI
RefSeq Acc Id: XM_039092075   ⟹   XP_038948003
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21495,645,955 - 95,977,120 (+)NCBI
RefSeq Acc Id: XM_039092076   ⟹   XP_038948004
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21495,645,955 - 95,977,120 (+)NCBI
RefSeq Acc Id: XM_039092077   ⟹   XP_038948005
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21495,729,972 - 95,977,120 (+)NCBI
RefSeq Acc Id: XM_039092078   ⟹   XP_038948006
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21495,646,085 - 95,977,120 (+)NCBI
RefSeq Acc Id: XM_039092079   ⟹   XP_038948007
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21495,645,955 - 95,956,134 (+)NCBI
RefSeq Acc Id: XM_039092080   ⟹   XP_038948008
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21495,738,025 - 95,977,120 (+)NCBI
RefSeq Acc Id: XM_039092081   ⟹   XP_038948009
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21495,645,955 - 95,977,120 (+)NCBI
RefSeq Acc Id: XM_039092082   ⟹   XP_038948010
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21495,645,955 - 95,977,120 (+)NCBI
RefSeq Acc Id: XM_039092083   ⟹   XP_038948011
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21495,645,955 - 95,977,120 (+)NCBI
RefSeq Acc Id: XM_039092084   ⟹   XP_038948012
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21495,646,067 - 95,898,659 (+)NCBI
RefSeq Acc Id: XM_039092085   ⟹   XP_038948013
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21495,646,074 - 95,832,707 (+)NCBI
RefSeq Acc Id: XR_005492977
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21495,646,074 - 95,832,798 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001121009   ⟸   NM_001127537
- UniProtKB: B1WC10 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000070201   ⟸   ENSRNOT00000092168
RefSeq Acc Id: XP_038948004   ⟸   XM_039092076
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038948010   ⟸   XM_039092082
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038948002   ⟸   XM_039092074
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038948003   ⟸   XM_039092075
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038948009   ⟸   XM_039092081
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038948011   ⟸   XM_039092083
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038948007   ⟸   XM_039092079
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038948012   ⟸   XM_039092084
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038948013   ⟸   XM_039092085
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038948006   ⟸   XM_039092078
- Peptide Label: isoform X3
- UniProtKB: A0A8I5Y2A3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948005   ⟸   XM_039092077
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038948008   ⟸   XM_039092080
- Peptide Label: isoform X5
RefSeq Acc Id: ENSRNOP00000076430   ⟸   ENSRNOT00000099293
RefSeq Acc Id: ENSRNOP00000078004   ⟸   ENSRNOT00000101695
RefSeq Acc Id: ENSRNOP00000090509   ⟸   ENSRNOT00000107912

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1WC10-F1-model_v2 AlphaFold B1WC10 1-726 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309501 AgrOrtholog
BioCyc Gene G2FUF-14827 BioCyc
Ensembl Genes ENSRNOG00000054331 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000070201 ENTREZGENE
  ENSRNOP00000070201.2 UniProtKB/TrEMBL
  ENSRNOP00000076430.1 UniProtKB/TrEMBL
  ENSRNOP00000078004 ENTREZGENE
  ENSRNOP00000078004.1 UniProtKB/TrEMBL
  ENSRNOP00000090509.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000092168 ENTREZGENE
  ENSRNOT00000092168.2 UniProtKB/TrEMBL
  ENSRNOT00000099293.1 UniProtKB/TrEMBL
  ENSRNOT00000101695 ENTREZGENE
  ENSRNOT00000101695.1 UniProtKB/TrEMBL
  ENSRNOT00000107912.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9027983 IMAGE-MGC_LOAD
InterPro Frtz UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:305552 UniProtKB/Swiss-Prot
MGC_CLONE MGC:187766 IMAGE-MGC_LOAD
NCBI Gene 305552 ENTREZGENE
PANTHER PTHR13667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Frtz UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Wdpcp PhenoGen
UniProt A0A0G2JXB0_RAT UniProtKB/TrEMBL
  A0A8I5Y2A3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y4G7_RAT UniProtKB/TrEMBL
  A0A8I6ABY1_RAT UniProtKB/TrEMBL
  B1WC10 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-01 Wdpcp  WD repeat containing planar cell polarity effector  RGD1309501  hypothetical LOC305552  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1309501  hypothetical LOC305552   RGD1309501_predicted  hypothetical LOC305552 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1309501_predicted  hypothetical LOC305552 (predicted)  LOC305552_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC305552_predicted  hypothetical LOC305552 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL