LOC120096758 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120096758 (U6 spliceosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120096758
Name: U6 spliceosomal RNA
RGD ID: 41336455
Description:
Type: snrna
RefSeq Status: MODEL
Previously known as: U6
RGD Orthologs
Human
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81476,321,234 - 76,321,338 (+)NCBIGRCr8
mRatBN7.21472,108,907 - 72,109,011 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1472,108,907 - 72,109,011 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1476,840,904 - 76,841,010 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map14q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC120096758
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81476,321,234 - 76,321,338 (+)NCBIGRCr8
mRatBN7.21472,108,907 - 72,109,011 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1472,108,907 - 72,109,011 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1476,840,904 - 76,841,010 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map14q21NCBI
RNU6-918P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38998,032,230 - 98,032,335 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl998,032,230 - 98,032,335 (+)EnsemblGRCh38hg38GRCh38
GRCh379100,794,512 - 100,794,617 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map9q22.33NCBI
CHM1_19100,940,958 - 100,941,063 (+)NCBICHM1_1
T2T-CHM13v2.09110,204,172 - 110,204,277 (+)NCBIT2T-CHM13v2.0
LOC119866271
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha269,702,042 - 9,702,149 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0269,821,164 - 9,821,271 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl269,821,164 - 9,821,271 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1269,798,266 - 9,798,373 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0269,861,667 - 9,861,774 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0269,908,561 - 9,908,668 (-)NCBIUU_Cfam_GSD_1.0


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143802371083023710Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1459848686104848686Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143900944484009444Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)147297021087582095Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143067446985041098Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1433424686102238540Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1474255551109089856Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143802371083023710Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1462398852107398852Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1460854936105854936Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1474255551109089856Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1459848686104848686Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143802371083023710Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144261625899224555Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)146592028399224555Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143941117087582095Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143802371083023710Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005493599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000085240
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1472,108,907 - 72,109,011 (+)Ensembl
RefSeq Acc Id: XR_005493599
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81476,321,234 - 76,321,338 (+)NCBI
mRatBN7.21472,108,907 - 72,109,011 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-15397 BioCyc
Ensembl Genes ENSRNOG00000053821 Ensembl
NCBI Gene LOC120096758 ENTREZGENE
PhenoGen LOC120096758 PhenoGen
RatGTEx ENSRNOG00000053821 RatGTEx
RNAcentral URS000064EDEB RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120096758  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data merged from RGD:15008207 737654 PROVISIONAL
2021-01-27 LOC120096758  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL