Vstm2a (V-set and transmembrane domain containing 2A)

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Gene: Vstm2a (V-set and transmembrane domain containing 2A) Rattus norvegicus

Analyze

Symbol:

Vstm2a

Name:

V-set and transmembrane domain containing 2A

RGD ID:

1596197

Description:

Predicted to enable identical protein binding activity. Predicted to be involved in several processes, including cellular response to BMP stimulus; positive regulation of brown fat cell differentiation; and positive regulation of white fat cell proliferation. Predicted to be located in extracellular region. Orthologous to human VSTM2A (V-set and transmembrane domain containing 2A); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

hypothetical protein LOC689106; LOC102546914; LOC364204; LOC689106; V-set and transmembrane domain-containing protein 2A; V-set and transmembrane domain-containing protein 2A-like

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	14	90,660,012 - 90,897,561 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	90,660,004 - 90,685,656 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	14	99,528,996 - 99,558,304 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	99,529,284 - 99,554,479 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	99,292,180 - 99,317,627 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	97,074,759 - 97,100,169 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	14	89,755,785 - 89,785,082 (+)	NCBI		Celera
Cytogenetic Map	14	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

genetic disease (ISO)

pleomorphic xanthoastrocytoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

Cuprizon (EXP)

fulvestrant (ISO)

genistein (ISO)

N-methyl-4-phenylpyridinium (ISO)

testosterone (EXP)

triclosan (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to BMP stimulus (ISO)

positive regulation of brown fat cell differentiation (ISO)

positive regulation of gene expression (ISO)

positive regulation of lipid storage (ISO)

positive regulation of white fat cell proliferation (ISO)

Cellular Component

extracellular region (ISO)

nucleus (ISO)

Molecular Function

identical protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:28052263

Genomics

Comparative Map Data

Vstm2a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	14	90,660,012 - 90,897,561 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	90,660,004 - 90,685,656 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	14	99,528,996 - 99,558,304 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	99,529,284 - 99,554,479 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	99,292,180 - 99,317,627 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	97,074,759 - 97,100,169 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	14	89,755,785 - 89,785,082 (+)	NCBI		Celera
Cytogenetic Map	14	q22	NCBI

VSTM2A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	54,542,375 - 54,571,067 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	54,542,325 - 54,571,080 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	54,610,068 - 54,638,760 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	54,577,513 - 54,604,442 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	7	54,714,731 - 54,741,659 (+)	NCBI		Celera
Cytogenetic Map	7	p11.2	NCBI
HuRef	7	54,447,719 - 54,473,944 (+)	NCBI		HuRef
CHM1_1	7	54,612,543 - 54,639,436 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	54,702,348 - 54,731,660 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	54,615,835 - 54,642,765 (+)	NCBI

Vstm2a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	16,207,742 - 16,234,551 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	16,207,724 - 16,377,310 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	16,257,742 - 16,284,551 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	16,257,724 - 16,427,310 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	16,157,727 - 16,184,554 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	16,157,775 - 16,184,189 (+)	NCBI		MGSCv36	mm8
Celera	11	16,651,091 - 16,678,297 (+)	NCBI		Celera
Cytogenetic Map	11	A2	NCBI
cM Map	11	8.89	NCBI

Vstm2a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955456	767,303 - 794,635 (-)	NCBI	ChiLan1.0	ChiLan1.0

VSTM2A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	7	107,700,323 - 107,729,191 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	55,136,669 - 55,168,379 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	55,447,878 - 55,477,148 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	55,447,878 - 55,477,148 (+)	Ensembl	panpan1.1		panPan2

VSTM2A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	5,344,966 - 5,373,486 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	5,345,261 - 5,371,332 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	5,199,044 - 5,395,038 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	5,401,270 - 5,591,014 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	5,400,982 - 5,495,682 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	5,392,587 - 5,582,022 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	5,366,130 - 5,556,107 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	5,469,372 - 5,660,933 (+)	NCBI		UU_Cfam_GSD_1.0

Vstm2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	108,918,690 - 108,997,859 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936678	945,791 - 971,219 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936678	932,663 - 970,905 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

VSTM2A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	138,990,480 - 138,997,131 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	138,990,480 - 139,017,965 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	153,209,795 - 153,236,793 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

VSTM2A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	4,300,584 - 4,330,607 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	4,298,700 - 4,330,543 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666062	18,165,655 - 18,195,538 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Vstm2a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	999,851 - 1,023,674 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624740	997,516 - 1,023,489 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Vstm2a
1722 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	68
Count of miRNA genes:	46
Interacting mature miRNAs:	53
Transcripts:	ENSRNOT00000006897, ENSRNOT00000067134
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	95876975	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	40793460	98037301	Rat
1300136	Rf22	Renal function QTL 22	3.9		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	14	42262529	95023211	Rat
1549834	Scl45	Serum cholesterol level QTL 45	5.8		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	50023211	95023211	Rat
2300197	Scl59	Serum cholesterol level QTL 59			blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	55147478	100147478	Rat
9590294	Uminl4	Urine mineral level QTL 4	5.66	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	14	55624247	100624247	Rat
9589034	Epfw11	Epididymal fat weight QTL 11	6	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	14	55624247	100624247	Rat
2317879	Alcrsp27	Alcohol response QTL 27	3.3	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	14	56631369	101631369	Rat
634328	Hc5	Hypercalciuria QTL 5	2.3		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	14	58184885	103184885	Rat
1582259	Gluco23	Glucose level QTL 23	3.1	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	70053989	104886043	Rat
1641900	Alcrsp11	Alcohol response QTL 11			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	14	70053989	104886043	Rat
1582197	Gluco27	Glucose level QTL 27	3.4	0.0006	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	73415323	92554092	Rat
1582209	Gluco20	Glucose level QTL 20	3.8	0.0005	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	92554092	Rat
1582236	Gluco22	Glucose level QTL 22	3.3	0.0164	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	92554092	Rat
1582255	Gluco29	Glucose level QTL 29	3.1	0.0025	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	14	73415323	92554092	Rat
1582250	Gluco26	Glucose level QTL 26	3.3	0.0009	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	95876975	Rat
631213	Bw60	Body weight QTL60	4.51		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	14	79950921	95876975	Rat
4889951	Bss92	Bone structure and strength QTL 92	3.9		tibia area (VT:1000281)	tibia-fibula cortical bone total cross-sectional area (CMO:0001721)	14	82057471	95876975	Rat

Markers in Region

RH132214

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	90,666,175 - 90,666,361 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	99,535,184 - 99,535,369	NCBI	Rnor6.0
Rnor_5.0	14	99,313,991 - 99,314,176	UniSTS	Rnor5.0
RGSC_v3.4	14	97,081,168 - 97,081,353	UniSTS	RGSC3.4
Celera	14	89,761,956 - 89,762,141	UniSTS
RH 3.4 Map	14	678.4	UniSTS
Cytogenetic Map	14	q22	UniSTS

RH138403

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	90,665,462 - 90,665,617 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	99,534,471 - 99,534,625	NCBI	Rnor6.0
Rnor_5.0	14	99,314,735 - 99,314,889	UniSTS	Rnor5.0
RGSC_v3.4	14	97,080,455 - 97,080,609	UniSTS	RGSC3.4
Celera	14	89,761,243 - 89,761,397	UniSTS
RH 3.4 Map	14	679.1	UniSTS
Cytogenetic Map	14	q22	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium									58	14	22
Low	3	14					3	3	14	21	13		3
Below cutoff		16	24	10	10	10	4	5	2		3	7	4

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_006221845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006221846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006221847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766881	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770441	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092861	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092862	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092865	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092866	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092867	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473996	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212907	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000006897 ⟹ ENSRNOP00000006897

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	90,660,004 - 90,685,656 (+)	Ensembl
Rnor_6.0 Ensembl	14	99,529,284 - 99,554,309 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000067134 ⟹ ENSRNOP00000063877

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	14	99,529,284 - 99,554,479 (+)	Ensembl

RefSeq Acc Id:

XM_039092861 ⟹ XP_038948789

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	90,660,014 - 90,690,446 (+)	NCBI

RefSeq Acc Id:

XM_039092862 ⟹ XP_038948790

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	90,660,012 - 90,897,561 (+)	NCBI

RefSeq Acc Id:

XM_039092863 ⟹ XP_038948791

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	90,660,014 - 90,690,446 (+)	NCBI

RefSeq Acc Id:

XM_039092865 ⟹ XP_038948793

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	90,660,014 - 90,685,234 (+)	NCBI

RefSeq Acc Id:

XM_039092866 ⟹ XP_038948794

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	90,660,014 - 90,670,714 (+)	NCBI

RefSeq Acc Id:

XM_039092867 ⟹ XP_038948795

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	90,662,587 - 90,690,984 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_038948789	(Get FASTA)	NCBI Sequence Viewer
	XP_038948790	(Get FASTA)	NCBI Sequence Viewer
	XP_038948791	(Get FASTA)	NCBI Sequence Viewer
	XP_038948793	(Get FASTA)	NCBI Sequence Viewer
	XP_038948794	(Get FASTA)	NCBI Sequence Viewer
	XP_038948795	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL97889	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

ENSRNOP00000063877 ⟸ ENSRNOT00000067134

RefSeq Acc Id:

ENSRNOP00000006897 ⟸ ENSRNOT00000006897

RefSeq Acc Id:	XP_038948790 ⟸ XM_039092862
- Peptide Label:	isoform X2
- UniProtKB:	A6JPX2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038948791 ⟸ XM_039092863
- Peptide Label:	isoform X3
- UniProtKB:	D3ZM70 (UniProtKB/TrEMBL), A6JPX2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038948789 ⟸ XM_039092861
- Peptide Label:	isoform X1
- UniProtKB:	A6JPX3 (UniProtKB/TrEMBL), A6JPX2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038948793 ⟸ XM_039092865
- Peptide Label:	isoform X4
- UniProtKB:	A6JPX2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038948794 ⟸ XM_039092866
- Peptide Label:	isoform X5
- UniProtKB:	A6JPX2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038948795 ⟸ XM_039092867
- Peptide Label:	isoform X6

Protein Domains

Ig-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZWD0-F1-model_v2	AlphaFold	D3ZWD0	1-250	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1596197	AgrOrtholog
BioCyc Gene	G2FUF-14946	BioCyc
Ensembl Genes	ENSRNOG00000005180	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000006897	ENTREZGENE
	ENSRNOP00000006897.7	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000006897	ENTREZGENE
	ENSRNOT00000006897.8	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
InterPro	Ig-like_dom	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Ig_V-set	UniProtKB/TrEMBL
NCBI Gene	689106	ENTREZGENE
PANTHER	V-SET AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	V-SET AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN 2A	UniProtKB/TrEMBL
Pfam	V-set	UniProtKB/TrEMBL
PhenoGen	Vstm2a	PhenoGen
PROSITE	IG_LIKE	UniProtKB/TrEMBL
SMART	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48726	UniProtKB/TrEMBL
UniProt	A6JPX2	ENTREZGENE, UniProtKB/TrEMBL
	A6JPX3	ENTREZGENE, UniProtKB/TrEMBL
	D3ZM70	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-07-29	Vstm2a	V-set and transmembrane domain containing 2A	LOC102546914	V-set and transmembrane domain-containing protein 2A-like	Data Merged	737654	PROVISIONAL
2013-12-18	LOC102546914	V-set and transmembrane domain-containing protein 2A-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-03-06	Vstm2a	V-set and transmembrane domain containing 2A	LOC689106	hypothetical protein LOC689106	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	LOC689106	hypothetical protein LOC689106	RGD1308957_predicted	similar to cDNA sequence BC027127; 9330184N17Rik (predicted)	Data Merged	1643240	APPROVED
2006-11-20	LOC689106	hypothetical protein LOC689106			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-01-20	RGD1308957_predicted	similar to cDNA sequence BC027127; 9330184N17Rik (predicted)	LOC364204_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC364204_predicted	similar to cDNA sequence BC027127; 9330184N17Rik (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar