Fgfr3 (fibroblast growth factor receptor 3)

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Gene: Fgfr3 (fibroblast growth factor receptor 3) Rattus norvegicus

Analyze

Symbol:

Fgfr3

Name:

fibroblast growth factor receptor 3

RGD ID:

620714

Description:

Enables fibroblast growth factor binding activity and fibroblast growth factor-activated receptor activity. Involved in cell-cell signaling; fibroblast growth factor receptor signaling pathway; and positive regulation of cell population proliferation. Located in cell surface; cytoplasm; and nucleus. Biomarker of chondrosarcoma. Human ortholog(s) of this gene implicated in several diseases, including Crouzon syndrome-acanthosis nigricans syndrome; LADD syndrome; SADDAN; bone development disease (multiple); and carcinoma (multiple). Orthologous to human FGFR3 (fibroblast growth factor receptor 3); PARTICIPATES IN fibroblast growth factor signaling pathway; endocytosis pathway; mitogen activated protein kinase signaling pathway; INTERACTS WITH 1,3,5-trinitro-1,3,5-triazinane; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FGFR3 (fibroblast growth factor receptor 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Fgfr3 (fibroblast growth factor receptor 3)	HGNC	EggNOG, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Fgfr3 (fibroblast growth factor receptor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FGFR3 (fibroblast growth factor receptor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FGFR3 (fibroblast growth factor receptor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fgfr3 (fibroblast growth factor receptor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FGFR3 (fibroblast growth factor receptor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FGFR3 (fibroblast growth factor receptor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Fgfr3 (fibroblast growth factor receptor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	FGFR3 (fibroblast growth factor receptor 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Mus musculus (house mouse):	Fgfr3 (fibroblast growth factor receptor 3)	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Danio rerio (zebrafish):	fgfr3 (fibroblast growth factor receptor 3)	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	btl	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	egl-15	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	htl	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	14	76,987,242 - 77,002,671 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	14	76,987,993 - 77,003,341 (-)	Ensembl
Rnor_6.0	14	82,272,322 - 82,287,739 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	82,273,070 - 82,287,706 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	82,961,882 - 82,977,113 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	82,683,191 - 82,697,229 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	14	82,685,581 - 82,699,620 (-)	NCBI
Celera	14	75,911,344 - 75,925,631 (-)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acanthosis nigricans (ISO)

achondroplasia (ISO)

Achondroplastic Dwarfism (ISO)

asphyxiating thoracic dystrophy (ISO)

autosomal dominant disease (ISS)

bladder carcinoma (ISO)

bladder urothelial carcinoma (ISO)

bone development disease (ISO)

breast adenocarcinoma (ISO)

breast cancer (ISO)

camptodactyly-tall stature-scoliosis-hearing loss syndrome (ISO)

carcinoma (ISO)

cervical cancer (ISO,ISS)

cervical squamous cell carcinoma (ISO)

cervix carcinoma (ISO)

chondrosarcoma (IEP)

chronic myeloid leukemia (ISO)

cleft lip (ISO)

cleft palate (ISO)

colon cancer (ISO)

colon carcinoma (ISO)

colorectal cancer (ISO)

Colorectal Neoplasms (ISO)

craniosynostosis (ISO)

Craniosynostosis Syndrome, Autosomal Recessive (ISO)

Crouzon syndrome (ISO)

Crouzon syndrome-acanthosis nigricans syndrome (ISO)

demyelinating disease (ISO)

Developmental Disabilities (ISO)

Dwarfism (ISO)

endometrial carcinoma (ISO)

epidermal nevus (ISO)

genetic disease (ISO)

Growth Disorders (ISO)

Hamartoma (ISO)

head and neck squamous cell carcinoma (ISO)

hypochondroplasia (ISO)

Knee Osteoarthritis (ISO)

LADD syndrome (ISO)

lung adenocarcinoma (ISO)

lung squamous cell carcinoma (ISO)

Merkel cell carcinoma (ISO)

Muenke syndrome (ISO)

multiple myeloma (ISO)

myeloid neoplasm (ISO)

neuroblastoma (ISO)

oral squamous cell carcinoma (ISO)

papillary renal cell carcinoma (ISO)

papillomavirus infectious disease (ISO)

Paraproteinemias (ISO)

Pituitary Stalk Interruption Syndrome (ISO)

plasma cell neoplasm (ISO)

plasmacytoma (ISO)

SADDAN (ISO)

Saethre-Chotzen syndrome (ISO)

sarcoma (ISO)

scoliosis (ISS)

seborrheic keratosis (ISO)

seminoma (ISO)

spermatocytoma (ISO)

Sporadic Papillary Renal Cell Carcinoma (ISO)

syndromic microphthalmia 5 (ISO)

testicular cancer (ISO)

testicular germ cell cancer (ISS)

Testicular Germ Cell Tumor (ISO)

thanatophoric dysplasia (ISO)

Thanatophoric Dysplasia, Type I (ISO)

Thanatophoric Dysplasia, Type II (ISO)

tongue cancer (ISO)

tonsil squamous cell carcinoma (ISO)

transitional cell carcinoma (ISO)

urinary bladder cancer (ISO)

Urinary Bladder Neoplasm (ISO)

Uterine Cervical Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

1,3,5-trinitro-1,3,5-triazinane (EXP)

1-chloro-2,4-dinitrobenzene (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4,6-trinitrobenzenesulfonic acid (EXP)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,3',5-triiodo-L-thyronine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP,ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

antimonite (ISO)

arachidonic acid (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

butan-1-ol (ISO)

butanal (ISO)

calcitriol (EXP)

carbon nanotube (ISO)

chlordecone (ISO)

chlorthalidone (EXP)

chrysene (ISO)

cisplatin (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diazinon (ISO)

dibenz[a,h]anthracene (ISO)

dibutyl phthalate (EXP)

dimercaprol (ISO)

dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP,ISO)

entinostat (ISO)

ethanol (ISO)

fenamidone (ISO)

genistein (ISO)

gossypol (ISO)

heparan sulfate (ISO)

heparin (ISO)

hydrogen chloride (ISO)

hydroquinone (ISO)

hydroquinone O-beta-D-glucopyranoside (ISO)

indometacin (ISO)

isobutanol (ISO)

isoprenaline (ISO)

isotretinoin (ISO)

ketamine (EXP)

kojic acid (ISO)

lead(0) (ISO)

lead(2+) (ISO)

lenalidomide (ISO)

Licochalcone B (ISO)

maneb (ISO)

masitinib (ISO)

metacetamol (ISO)

methamphetamine (ISO)

methylmercury chloride (ISO)

midostaurin (ISO)

mono(2-ethylhexyl) phthalate (ISO)

nitrofen (EXP,ISO)

panobinostat (ISO)

paracetamol (ISO)

paraquat (ISO)

PCB138 (EXP)

PD173074 (ISO)

pentane-2,3-dione (EXP)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

pirinixic acid (ISO)

pomalidomide (ISO)

ponatinib (ISO)

propiconazole (ISO)

quercetin (ISO)

resveratrol (ISO)

retinyl acetate (ISO)

SB 431542 (ISO)

sildenafil citrate (EXP)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

tamoxifen (ISO)

tanespimycin (ISO)

temozolomide (ISO)

testosterone (ISO)

tetrachloromethane (EXP)

thalidomide (ISO)

triacsin C (ISO)

trichostatin A (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vancomycin (ISO)

vorinostat (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

alveolar secondary septum development (ISO)

axonogenesis involved in innervation (ISO)

bone development (ISO)

bone maturation (ISO)

bone mineralization (ISO)

bone morphogenesis (ISO)

bone trabecula morphogenesis (ISO)

calcium ion homeostasis (ISO)

cartilage development (ISO)

cell differentiation (ISO)

cell-cell signaling (IDA)

central nervous system myelination (ISO)

cochlea development (ISO)

digestive tract morphogenesis (ISO)

epithelial cell fate commitment (ISO)

ERK1 and ERK2 cascade (ISO)

fibroblast growth factor receptor apoptotic signaling pathway (ISO)

fibroblast growth factor receptor signaling pathway (IDA,ISO)

forebrain development (ISO)

inner ear development (ISO)

inner ear receptor cell differentiation (ISO)

lens fiber cell development (ISO)

lens morphogenesis in camera-type eye (ISO)

morphogenesis of an epithelium (ISO)

negative regulation of astrocyte differentiation (ISO)

negative regulation of cell differentiation (ISO)

negative regulation of cell population proliferation (ISO)

negative regulation of developmental growth (ISO)

negative regulation of epithelial cell proliferation (ISO)

negative regulation of gene expression (ISO)

negative regulation of mitotic nuclear division (ISO)

negative regulation of smoothened signaling pathway (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

oligodendrocyte development (ISO)

p38MAPK cascade (ISO)

peptidyl-tyrosine phosphorylation (ISO)

positive regulation of bone mineralization (ISO)

positive regulation of canonical Wnt signaling pathway (ISO)

positive regulation of cell population proliferation (IDA,ISO)

positive regulation of cell proliferation in bone marrow (ISO)

positive regulation of endothelial cell proliferation (ISO)

positive regulation of ERK1 and ERK2 cascade (ISO)

positive regulation of kinase activity (IBA)

positive regulation of MAPK cascade (IBA,ISO)

positive regulation of MAPKKK cascade by fibroblast growth factor receptor signaling pathway (ISO)

positive regulation of neuron apoptotic process (ISO)

positive regulation of peptidyl-tyrosine phosphorylation (ISO)

positive regulation of phosphatidylinositol 3-kinase activity (ISO)

positive regulation of phospholipase activity (ISO)

positive regulation of protein ubiquitination (ISO)

positive regulation of tyrosine phosphorylation of STAT protein (ISO)

post-anal tail morphogenesis (ISO)

protein autophosphorylation (ISO)

regulation of bone remodeling (ISO)

regulation of collagen metabolic process (ISO)

regulation of ossification (ISO)

regulation of osteoclast differentiation (ISO)

response to axon injury (ISO)

response to sodium phosphate (ISO)

somatic stem cell population maintenance (ISO)

substantia nigra development (ISO)

transmembrane receptor protein tyrosine kinase signaling pathway (IBA)

Cellular Component

cell surface (IDA)

cytoplasm (IDA)

cytoplasmic side of plasma membrane (ISO)

endoplasmic reticulum (IEA,ISO)

Golgi apparatus (ISO)

integral component of plasma membrane (IBA,ISO)

lysosome (ISO)

nucleus (IDA)

perinuclear region of cytoplasm (ISO)

plasma membrane (ISO)

receptor complex (IBA)

transport vesicle (ISO)

Molecular Function

ATP binding (IEA)

fibroblast growth factor binding (IBA,IPI,ISO)

fibroblast growth factor-activated receptor activity (IBA,IDA,ISO,NAS)

growth factor activity (NAS)

identical protein binding (ISO)

protein binding (ISO)

protein serine/threonine/tyrosine kinase activity (IEA)

protein tyrosine kinase activity (ISO)

transmembrane receptor protein tyrosine kinase activity (IBA)

Molecular Pathway Annotations Click to see Annotation Detail View

endocytosis pathway (IEA)

fibroblast growth factor signaling pathway (IDA)

mitogen activated protein kinase signaling pathway (IEA)

urinary bladder cancer pathway (IEA)

References

References - curated


1.	Barbisan F, etal., Cancer. 2008 Feb 1;112(3):636-44.
2.	Bellus GA, etal., Am J Med Genet. 1999 Jul 2;85(1):53-65.
3.	Bersani C, etal., Anticancer Res. 2018 Aug;38(8):4683-4690. doi: 10.21873/anticanres.12774.
4.	Burger M, etal., Eur Urol. 2008 Oct;54(4):835-44. Epub 2007 Dec 26.
5.	Cappellen D, etal., Nat Genet. 1999 Sep;23(1):18-20.
6.	Castro-Feijoo L, etal., Eur J Endocrinol. 2008 Sep;159(3):243-9. doi: 10.1530/EJE-08-0393. Epub 2008 Jun 26.
7.	Chen L, etal., Hum Mol Genet. 2001 Mar 1;10(5):457-65.
8.	Cinaroglu A, etal., J Neurosci Res. 2005 Feb 1;79(3):329-39.
9.	Claus P and Grothe C, Histochem Cell Biol 2001 Feb;115(2):147-55.
10.	Delezoide AL, etal., Hum Mol Genet. 1997 Oct;6(11):1899-906.
11.	Drummond AE, etal., Endocrinology. 2007 Aug;148(8):3711-21. Epub 2007 May 10.
12.	Dvorak P, etal., Leukemia. 2003 Dec;17(12):2418-25. doi: 10.1038/sj.leu.2403152.
13.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
14.	Gillison ML, etal., Genome Res. 2019 Jan;29(1):1-17. doi: 10.1101/gr.241141.118. Epub 2018 Dec 18.
15.	GOA data from the GO Consortium
16.	Hammam O, etal., Open Access Maced J Med Sci. 2017 Apr 8;5(2):160-166. doi: 10.3889/oamjms.2017.048. eCollection 2017 Apr 15.
17.	Jin C, etal., Cancer Res 2004 Jul 1;64(13):4555-62.
18.	Junker K, etal., Neoplasia. 2008 Jan;10(1):1-7.
19.	Martinez-Torrecuadrada JL, etal., Mol Cancer Ther. 2008 Apr;7(4):862-73.
20.	Matsushita M, etal., Endocrinology. 2015 Feb;156(2):548-54. doi: 10.1210/en.2014-1914. Epub 2014 Dec 2.
21.	Messersmith DJ, etal., J Neurosci Res. 2000 Oct 15;62(2):241-56.
22.	Meyers GA, etal., Nat Genet. 1995 Dec;11(4):462-4.
23.	MGD data from the GO Consortium
24.	Moko SB and Blandin de Chalain TM, J Craniomaxillofac Surg. 2001 Feb;29(1):22-4.
25.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
26.	Oji GS, etal., Iowa Orthop J. 2007;27:9-16.
27.	OMIM Disease Annotation Pipeline
28.	Online Mendelian Inheritance in Man, OMIM (TM).
29.	Pipeline to import KEGG annotations from KEGG into RGD
30.	Pringle NP, etal., Development 2003 Jan;130(1):93-102.
31.	RGD automated data pipeline
32.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
33.	RGD automated import pipeline for gene-chemical interactions
34.	RGD comprehensive gene curation
35.	Rousseau F, etal., Nature. 1994 Sep 15;371(6494):252-4.
36.	Sawai H, etal., Prenat Diagn. 1999 Jan;19(1):21-4.
37.	Seiwert TY, etal., Clin Cancer Res. 2015 Feb 1;21(3):632-41. doi: 10.1158/1078-0432.CCR-13-3310. Epub 2014 Jul 23.
38.	Shotelersuk V, etal., Oncol Rep. 2001 Nov-Dec;8(6):1301-4. doi: 10.3892/or.8.6.1301.
39.	Sibley K, etal., Oncogene. 2001 Feb 8;20(6):686-91.
40.	Sibley K, etal., Oncogene. 2001 Jul 19;20(32):4416-8.
41.	Tang J, etal., Arthritis Rheumatol. 2016 Oct;68(10):2432-43. doi: 10.1002/art.39739.
42.	Veija T, etal., BMC Cancer. 2017 Mar 31;17(1):236. doi: 10.1186/s12885-017-3233-5.
43.	Zammit C, etal., J Pathol. 2001 May;194(1):27-34.

Additional References at PubMed

PMID:8663044	PMID:8875318	PMID:9716527	PMID:9811582	PMID:11290300	PMID:11294897	PMID:12417662	PMID:12574417	PMID:12815063	PMID:14699054	PMID:14732692	PMID:15292251
PMID:15708559	PMID:15781473	PMID:16009496	PMID:16291864	PMID:17117437	PMID:17192470	PMID:17234579	PMID:17467696	PMID:17555714	PMID:17557302	PMID:17561467	PMID:17708356
PMID:18061161	PMID:18187602	PMID:18455718	PMID:19407216	PMID:20053668	PMID:20356821	PMID:20362703	PMID:20582225	PMID:21691921	PMID:21994076	PMID:23696738	PMID:23972473
PMID:24120763	PMID:28964968	PMID:29626475

Genomics

Comparative Map Data

Fgfr3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	14	76,987,242 - 77,002,671 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	14	76,987,993 - 77,003,341 (-)	Ensembl
Rnor_6.0	14	82,272,322 - 82,287,739 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	82,273,070 - 82,287,706 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	82,961,882 - 82,977,113 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	82,683,191 - 82,697,229 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	14	82,685,581 - 82,699,620 (-)	NCBI
Celera	14	75,911,344 - 75,925,631 (-)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

FGFR3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	4	1,793,293 - 1,808,872 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	4	1,793,293 - 1,808,872 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	4	1,795,020 - 1,810,594 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	1,765,421 - 1,780,396 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	4	1,762,853 - 1,777,829	NCBI
Celera	4	1,707,555 - 1,723,113 (+)	NCBI
Cytogenetic Map	4	p16.3	NCBI
HuRef	4	1,725,137 - 1,753,471 (+)	NCBI		HuRef
CHM1_1	4	1,792,977 - 1,808,551 (+)	NCBI		CHM1_1

Fgfr3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	33,879,068 - 33,894,412 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	5	33,879,018 - 33,894,412 (+)	Ensembl
GRCm38	5	33,721,724 - 33,737,068 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	33,721,674 - 33,737,068 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	34,064,373 - 34,079,713 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	5	34,038,581 - 34,053,924 (+)	NCBI			mm8
Celera	5	31,197,840 - 31,213,180 (+)	NCBI		Celera
Cytogenetic Map	5	B2	NCBI
cM Map	5	17.83	NCBI

Fgfr3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955514	1,025,600 - 1,038,590 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955514	1,030,244 - 1,038,590 (+)	NCBI	ChiLan1.0	ChiLan1.0

FGFR3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	4	1,843,780 - 1,858,635 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	1,843,774 - 1,861,692 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	4	1,933,172 - 1,948,742 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

FGFR3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	62,309,128 - 62,318,932 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	62,303,756 - 62,323,896 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	64,826,871 - 64,841,704 (-)	NCBI
ROS_Cfam_1.0	3	62,784,572 - 62,799,405 (-)	NCBI
UMICH_Zoey_3.1	3	62,278,095 - 62,292,924 (-)	NCBI
UNSW_CanFamBas_1.0	3	62,481,623 - 62,496,456 (-)	NCBI
UU_Cfam_GSD_1.0	3	62,840,834 - 62,855,656 (-)	NCBI

Fgfr3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	67,890,080 - 67,904,598 (-)	NCBI
SpeTri2.0	NW_004936477	21,591,772 - 21,606,289 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FGFR3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	879,151 - 895,912 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	879,151 - 894,968 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	336,714 - 341,509 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FGFR3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	46,958,444 - 46,974,032 (-)	NCBI	ChlSab1.1		chlSab2
ChlSab1.1 Ensembl	27	46,957,254 - 46,973,392 (-)	Ensembl	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666051	3,334,868 - 3,350,469 (-)	NCBI	Vero_WHO_p1.0

Fgfr3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624755	25,633,690 - 25,647,361 (-)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

RH144549

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	77,003,197 - 77,003,437 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	82,288,272 - 82,288,511	NCBI	Rnor6.0
Rnor_5.0	14	82,977,649 - 82,977,888	UniSTS	Rnor5.0
RGSC_v3.4	14	82,698,393 - 82,698,632	UniSTS	RGSC3.4
Celera	14	75,926,793 - 75,927,032	UniSTS
RH 3.4 Map	14	504.98	UniSTS
Cytogenetic Map	14	q21	UniSTS

Fgfr3

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	76,990,393 - 76,990,604 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	82,275,471 - 82,275,681	NCBI	Rnor6.0
Rnor_5.0	14	82,965,027 - 82,965,237	UniSTS	Rnor5.0
Celera	14	75,913,745 - 75,913,955	UniSTS
Cytogenetic Map	14	q21	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	95876975	Rat
70187	Pancm5	Pancreatic morphology QTL 5	16.7		pancreas mass (VT:0010144)	pancreas weight to body weight ratio (CMO:0000630)	14	30320092	80829842	Rat
2313048	Bss84	Bone structure and strength QTL 84	3.1	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	14	37669719	82669719	Rat
2313084	Bss83	Bone structure and strength QTL 83	2.9	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	14	37669719	82669719	Rat
2313089	Bss81	Bone structure and strength QTL 81	3.4	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	14	37669719	82669719	Rat
2313100	Bss82	Bone structure and strength QTL 82	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	14	37669719	82669719	Rat
738037	Hcas6	Hepatocarcinoma susceptibility QTL 6	2.93		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	14	39057237	83368335	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	40793460	98037301	Rat
1300136	Rf22	Renal function QTL 22	3.9		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	14	42262529	95023211	Rat
1549834	Scl45	Serum cholesterol level QTL 45	5.8		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	50023211	95023211	Rat
2300197	Scl59	Serum cholesterol level QTL 59			blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	55147478	100147478	Rat
9590294	Uminl4	Urine mineral level QTL 4	5.66	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	14	55624247	100624247	Rat
9589034	Epfw11	Epididymal fat weight QTL 11	6	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	14	55624247	100624247	Rat
2317879	Alcrsp27	Alcohol response QTL 27	3.3	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	14	56631369	101631369	Rat
634328	Hc5	Hypercalciuria QTL 5	2.3		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	14	58184885	103184885	Rat
70153	Bp59	Blood pressure QTL 59	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	14	68757796	83368335	Rat
1582259	Gluco23	Glucose level QTL 23	3.1	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	70053989	104886043	Rat
1641900	Alcrsp11	Alcohol response QTL 11			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	14	70053989	104886043	Rat
1582197	Gluco27	Glucose level QTL 27	3.4	0.0006	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	73415323	92554092	Rat
1582209	Gluco20	Glucose level QTL 20	3.8	0.0005	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	92554092	Rat
1582236	Gluco22	Glucose level QTL 22	3.3	0.0164	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	92554092	Rat
1582255	Gluco29	Glucose level QTL 29	3.1	0.0025	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	14	73415323	92554092	Rat
1582250	Gluco26	Glucose level QTL 26	3.3	0.0009	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	95876975	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	464
Count of miRNA genes:	248
Interacting mature miRNAs:	299
Transcripts:	ENSRNOT00000023144
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	6	30	30	3	30			74	35	27	11
Low		37	27	11	16	11	8	11			14		8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251392	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251393	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251396	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599397	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC133613	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF277717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D83496	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D83497	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000023144 ⟹ ENSRNOP00000023144

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	76,987,993 - 77,003,341 (-)	Ensembl
Rnor_6.0 Ensembl	14	82,273,070 - 82,287,108 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000080695 ⟹ ENSRNOP00000072062

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	76,987,993 - 77,003,341 (-)	Ensembl
Rnor_6.0 Ensembl	14	82,273,657 - 82,287,706 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000109689 ⟹ ENSRNOP00000077634

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	76,987,993 - 77,003,341 (-)	Ensembl

RefSeq Acc Id:

NM_053429 ⟹ NP_445881

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	76,987,993 - 77,002,033 (-)	NCBI
Rnor_6.0	14	82,273,070 - 82,287,108 (-)	NCBI
Rnor_5.0	14	82,961,882 - 82,977,113 (-)	NCBI
RGSC_v3.4	14	82,683,191 - 82,697,229 (-)	RGD
Celera	14	75,911,344 - 75,925,631 (-)	RGD

Sequence:

show sequence

ATGGTAGTCCCGGCCTGCGTGCTAGTGTTCTGCGTGGCGGTCGTGGCTGGAGTTACTTCCGAGC
CTCCCGGTCCAGAGCAGCGAGTTGGTCGGAGAGCGGCAGAGGTTCCAGGGCCTGAACCTAGCCA
GCAGGAGCAGGTGGCCTTCGGCAGTGGGGACACTGTGGAGCTGAGCTGCCATCCGCCTGGAGGT
GCCCCCACAGGCCCCACTCTCTGGGCTAAGGACGGTGTGGGGCTGGTGGCCTCNCACCGTATCC
TGGTGGGGCCTCAGAGGCTTCAAGTGCTAAACGCCACCCATGAGGATGCTGGGGTCTACAGCTG
CCAGCAGCGGCTAACCCGGCGTGTGCTGTGCCACTTTAGTGTGCGTGTAACAGATGCTCCGTCC
TCAGGAGATGACGAAGATGGGGAGGACGTGGCTGAAGACACAGGGGCTCCTTACTGGACTCGAC
CGGAGCGTATGGATAAGAAACTGCTGGCTGTGCCAGCTGCAAACACTGTACGCTTCCGCTGCCC
AGCTGCTGGCAACCCCACCCCCTCCATCCCCTGGCTGAAGAACGGCAAAGAATTCCGAGGGGAG
CACCGCATTGGGGGCATTAAGCTCCGGCACCAGCAGTGGAGCTTGGTCATGGAAAGTGTGGTGC
CCTCTGACCGCGGCAATTACACCTGCGTGGTTGAGAACAAGTTTGGCAGCATCCGGCAGACGTA
CACCCTGGATGTGCTGGAGCGCTCCCCACACCGGCCCATCCTGCAGGCTGGGCTGCCAGCCAAC
CAGACAGCCGTTCTGGGCAGTGACGTGGAGTTCCACTGCAAGGTGTACAGCGACGCACAGCCAC
ACATCCAGTGGCTGAAGCACGTGGAGGTGAATGGGAGCAAGGTGGGCCCTGACGGCACGCCCTA
CGTCACTGTACTCAAGACTGCAGGAGCTAACACCACCGACAGGGAGCTAGAGGTTCTGTCCTTG
CACAATGTCACCTTTGAGGATGCGGGGGAGTACACCTGCCTGGCGGGCAATTCTATCGGGTTTT
CCCATCACTCTGCGTGGCTGGTGGTGCTGCCAGCCGAGGAGGAGCTGATGGAAGTTGACGAGGC
TGGCAGCGTGTACGCGGGTGTCCTCAGCTACGGGGTGGGCTTCTTCCTCTTCATCCTGGTGGTG
GCGGCAGTGACGCTCTGCCGTCTGCGCAGTCCCCCAAAGAAGGGCCTGGGCTCGCCCACCGTGC
ACAAGGTCTCTCGCTTCCCGCTTAAGCGACAGGTGTCCTTGGAGTCTAATTCCTCTATGAACTC
CAACACACCTCTCGTCCGGATTGCCCGGCTGTCCTCAGGAGAAGGTCCTGTCCTGGCCAATGTT
TCTGAACTTGAGCTGCCTGCTGACCCCAAGTGGGAGCTATCCAGGACCCGGCTGACACTCGGTA
AGCCTCTTGGAGAAGGCTGCTTTGGACAGGTTGTCATGGCAGAAGCTATTGGCATCGACAAGGA
CCGCACTGCCAAGCCTGTCACCGTGGCCGTGAAGATGCTGAAAGATGATGCGACTGACAAGGAC
CTGTCGGACCTGGTGTCTGAGATGGAGATGATGAAAATGATTGGCAAGCACAAGAACATCATTA
ACCTGTTGGGGGCCTGCACCCAGGGTGGGCCCCTGTATGTGCTGGTGGAGTATGCAGCCAAGGG
CAACCTGCGAGAGTTCCTCCGGGCACGGCGGCCTCCAGGCATGGATTACTCCTTTGATGCCTGC
AGGCTGCCAGAGGAACAGCTCACCTGCAAGGATCTGGTGTCCTGTGCCTACCAGGTGGCACGGG
GCATGGAGTACTTGGCTTCCCAGAAGTGTATTCACAGAGACCTGGCTGCCAGAAACGTGCTGGT
GACTGAGGACAATGTGATGAAGATTGCAGACTTTGGCCTGGCCCGAGATGTGCACAACCTGGAT
TACTACAAGAAGACCACAAATGGCCGGCTACCTGTGAAGTGGATGGCACCAGAGGCCCTTTTTG
ACCGAGTCTACACCCATCAGAGTGATGTCTGGTCCTTTGGTGTCCTCCTCTGGGAGATCTTTAC
ACTGGGTGGGTCACCATATCCTGGCATCCCAGTGGAAGAGCTTTTCAAGCTGTTGAAAGAGGGC
CACCGCATGGACAAGCCAGCCAACTGCACACATGACCTGTACATGATCATGCGGGAATGTTGGC
ATGCAGTGCCTTCACAGAGGCCCACCTTCAAGCAGTTGGTAGAGGATTTAGACCGCATCCTCAC
GGTGACATCAACTGACGAGTACTTGGACCTCTCGGTGCCATTTGAACAGTACTCGCCAGGTGGC
CAAGATACTCCTAGCTCCAGCTCGTCCGGGGACGACTCTGTGTTCACCCATGACCTGCTACCCC
CAGGCCCACCCAGCAATGGGGGACCTCGGACGTGAAGGGCCGACAGTCCCACAGACCAAGCCCC
AGCCAATGTTTACGCGGACCCTAGCCCGCCCTGCTACTGCTGGTGTGCAGTGGACCCTAGCCAG
CCCAGCGCAATGGGCCAGCAATAGACAAGACTTCCTGCGTGTTTATCCTTGGCTCCTGGGTGCA
GAGGCCCCTGGGGAACATGTACTGCTGTAGAATGATCTCCTGACTGGCCAGGGCCAGGAGCACC
AAATGAGAATGTAAGAGGGCCCCCCCGCCCCTGTGCGACAGTGGGGTTCTGGCTCCCTCACTCC
CCACTGCTACCTTACAGGGACCGTTGTAGAGAGGGCTGGACTTCATGTCCAGGGTGGGCCTTGG
CCTTTTTGGTGCCCAAAGCTGAGCCTGTAGGGAGGCTCTGCTCTTATGTGGCAAGCCTCTCTCC
TACATGGCACCTTGTGCCTGGGGTGAGTCATAGCTCGACACCTCCAGGCTGCCCGCTTCCCATC
CTGTCCCTCAAATTACGGGTACCTGAAGGGGGGGTGGCCATAACTTCTATCAGAAAGGTTTATT
CCAGAGGAAAATGTACATTTATATAAATAGATGTTGTGTATGATATATATAGATATATACATAC
ATATATATAAGAATATCTATATGGAAAAAGGCAAAGCTGAGGCCCAAGGGAGCAAGACACCCCA
TGGGGCTCACCAGTGAGATGGCACAGGCAGGCCGAGAAGCAGGGGCCTTGTCTGGCATTGCAGT
GTTGTTTGTATCTGGACCTGTATATTTGTAAAGCTATTTATCAACCCTCGG

hide sequence

RefSeq Acc Id:

XM_006251390 ⟹ XP_006251452

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	76,987,242 - 77,002,671 (-)	NCBI
Rnor_6.0	14	82,272,322 - 82,287,739 (-)	NCBI
Rnor_5.0	14	82,961,882 - 82,977,113 (-)	NCBI

Sequence:

show sequence

CCCAGTTCAGTGAGCTGTGGCAGCGGGGGTGGCGGGAGCAGCTGGCGCCGTGCGGTCCGCTCCG
GCGAGGGGACTCACCGGTGGGGTGGGCGGCCGGCCACTGGGACAGAGGAGAGCCTGGAAGAGCC
GGCCGAGAGCCGAAGCCGGAGCCGCGAGTGGTGAGCTGGGCTCTAGCGGCGGCCGCCAGTCTCC
GCAGCGGCGCCGGAGCCGGGTGTGGGGGGTTGCAGCATGCCCGCGCGCATCGCTTGAGGACGCC
ACGGCCCCAGCTCCGGAGCCATGGTAGTCCCGGCCTGCGTGCTAGTGTTCTGCGTGGCGGTCGT
GGCTGGAGTTACTTCCGAGCCTCCCGGTCCAGAGCAGCGAGTTGGTCGGAGAGCGGCAGAGGTT
CCAGGGCCTGAACCTAGCCAGCAGGAGCAGGTGGCCTTCGGCAGTGGGGACACTGTGGAGCTGA
GCTGCCATCCGCCTGGAGGTGCCCCCACAGGCCCCACTCTCTGGGCTAAGGACGGTGTGGGGCT
GGTGGCCTCCCACCGTATCCTGGTGGGGCCTCAGAGGCTTCAAGTGCTAAACGCCACCCATGAG
GATGCTGGGGTCTACAGCTGCCAGCAGCGGCTAACCCGGCGTGTGCTGTGCCACTTTAGTGTGC
GTGTGACAGATGCTCCGTCCTCAGGAGATGACGAAGATGGGGAGGACGTGGCTGAAGACACAGG
GGCTCCTTACTGGACTCGACCGGAGCGTATGGATAAGAAACTGCTGGCTGTGCCAGCTGCAAAC
ACTGTACGCTTCCGCTGCCCAGCTGCTGGCAACCCCACCCCCTCCATCTCCTGGCTGAAGAACG
GCAAAGAATTCCGAGGGGAGCACCGCATTGGGGGCATTAAGCTCCGGCACCAGCAGTGGAGCTT
GGTCATGGAAAGTGTGGTGCCCTCTGACCGCGGCAATTACACCTGCGTGGTTGAGAACAAGTTT
GGCAGCATCCGGCAGACGTACACCCTGGATGTGCTGGAGCGCTCCCCACACCGGCCCATCCTGC
AGGCTGGGCTGCCAGCCAACCAGACAGCCGTTCTGGGCAGTGACGTGGAGTTCCACTGCAAGGT
GTACAGCGACGCACAGCCACACATCCAGTGGCTGAAGCACGTGGAGGTGAATGGGAGCAAGGTG
GGCCCTGACGGCACGCCCTACGTCACTGTACTCAAGTCCTGGATCAGTGAGAATGTGGAGGCAG
ACGCACGCCTCCGCCTGGCCAATGTGTCGGAGCGGGACGGGGGCGAGTACCTCTGTCGAGCCAC
CAATTTCATAGGCGTGGCCGAGAAGGCCTTTTGGCTTCGTGTTCACGGGCCCCAAGCAGCCGAG
GAGGAGCTGATGGAAGTTGACGAGGCTGGCAGCGTGTACGCGGGTGTCCTCAGCTACGGGGTGG
GCTTCTTCCTCTTCATCCTGGTGGTGGCGGCAGTGACGCTCTGCCGTCTGCGCAGTCCCCCAAA
GAAGGGCCTGGGCTCGCCCACCGTGCACAAGGTCTCTCGCTTCCCGCTTAAGCGACAGGTAACA
GTGTCCTTGGAGTCTAATTCCTCTATGAACTCCAACACACCTCTCGTCCGGATTGCCCGGCTGT
CCTCAGGAGAAGGTCCTGTCCTGGCCAATGTTTCTGAACTTGAGCTGCCTGCTGACCCCAAGTG
GGAGCTATCCAGGACCCGGCTGACACTCGGTAAGCCTCTTGGAGAAGGCTGCTTTGGACAGGTT
GTCATGGCAGAAGCTATTGGCATCGACAAGGACCGCACTGCCAAGCCTGTCACCGTGGCCGTGA
AGATGCTGAAAGATGATGCCACTGACAAGGACCTGTCGGACCTGGTGTCTGAGATGGAGATGAT
GAAAATGATTGGCAAGCACAAGAACATCATTAACCTGTTGGGGGCCTGCACCCAGGGTGGGCCC
CTGTATGTGCTGGTGGAGTATGCAGCCAAGGGCAACCTGCGAGAGTTCCTCCGGGCACGGCGGC
CTCCAGGCATGGATTACTCCTTTGATGCCTGCAGGCTGCCAGAGGAACAGCTCACCTGCAAGGA
TCTGGTGTCCTGTGCCTACCAGGTGGCACGGGGCATGGAGTACTTGGCTTCCCAGAAGTGTATT
CACAGAGACCTGGCTGCCAGAAACGTGCTGGTGACTGAGGACAATGTGATGAAGATTGCAGACT
TTGGCCTGGCCCGAGATGTGCACAACCTGGATTACTACAAGAAGACCACAAATGGCCGGCTACC
TGTGAAGTGGATGGCACCAGAGGCCCTTTTTGACCGAGTCTACACCCATCAGAGTGATGTCTGG
TCCTTTGGTGTCCTCCTCTGGGAGATCTTTACACTGGGTGGGTCACCATATCCTGGCATCCCAG
TGGAAGAGCTTTTCAAGCTGTTGAAAGAGGGCCACCGCATGGACAAGCCAGCCAACTGCACACA
TGACCTGTACATGATCATGCGGGAATGTTGGCATGCAGTGCCTTCACAGAGGCCCACCTTCAAG
CAGTTGGTAGAGGATTTAGACCGCATCCTCACGGTGACATCAACTGACGAGTACTTGGACCTCT
CGGTGCCATTTGAACAGTACTCGCCAGGTGGCCAAGATACTCCTAGCTCCAGCTCGTCCGGGGA
CGACTCTGTGTTCACCCATGACCTGCTACCCCCAGGCCCACCCAGCAATGGGGGACCTCGGACG
TGAAGGGCCGACAGTCCCACAGACCAAGCCCCAGCCAATGTTTACGCGGACCCTAGCCCGCCCT
GCTACTGCTGGTGTGCAGTGGACCCTAGCCAGCCCAGTGCAATGGGCCAGCAATAGACAAGACT
TCCTGCGTGTTTATCCTTGGCTCCTGGGTGCAGAGGCCCCTGGGGAACATGTACTGCTGTAGAA
TGATCTCCTGACTGGCCAGGGCCAGGAGCACCAAATGAGAATGTAAGAGGGCCCCCCCGCCCCT
GTGCGACAGTGGGGTTCTGGCTCCCTCACTCCCCACTGCTACCTTACAGGGACCGTTGTAGAGA
GGGCTGGACTTCATGTCCAGGGTGGGCCTTGGCCTTTTTGGTGCCCAAAGCTGAGCCTGTAGGG
AGGCTCTGCTCTTATGTGGCAAGCCTCTCTCCTACATGGCACCTTGTGCCTGGGGTGAGTCATA
GCTCGACACCTCCAGGCTGCCCGCTTCCCATCCTGTCCCTCAAATTACGGGTACCTGAAGGGGG
GGTGGCCATAACTTCTATCAGAAAGGTTTATTCCAGAGGAAAATGTACATTTATATAAATAGAT
GTTGTGTATGATATATATAGATATATACATACATATATATAAGAATATCTATATGGAAAAAGGC
AAAGCTGAGGCCCAAGGGAGCAAGACACCCCATGGGGCTCACCAGTGAGATGGCACAGGCAGGC
CGAGAAGCAGGGGCCTTTTCTGGCATTGCAGTGTTGTTTGTATCTGGACCTGTATATTTGTAAA
GCTATTTATCAACCCTCGGAGCTCCAGTCCCCAACCCCAGGTTCATAGCGTTTAGTCCCAGGGT
ATTGCAGAAATTTTAAGTTGTAACTTATTAACAGCTGAAGAGGTTTATGCTGAATCTAGGGAGT
TGCTGAGAATGTGCGTCTGTCCTCCCACCAAGGCTGGACGTGGCCCCGTGGAGCTTGAGTGACT
CTCCTAGTTAGCCATGGCTCCAGTGAACATCTTTTTTTTATTTTGTTTCCTTTGGCCCTCTTCT
GTGGGGGATTAGATTATATAGGGACTTTCTTTAGAAGATTTTTAAAGATTTCAAGGTGAACTGG
TATTTTTCATACAGATTATTCTAATTGTTATGTGTTCCAGGCAGGGGCCTGTGCCCAGGGAGGG
GCTGGCCCTGCAAAGAAGGTTCAGATGTTAATAGATGTCTGTTACAAGTTTATCTATCTATAAT
TTATTGAGTTTCTACAAGTTGTTTTGCTGTAGGCTTAACACTTCTATGCAGTGATTCTAGACTT
TTTATAGCCTAGACTGCTACCTTTCAAAGCTTGGGAGAGAGTGCTGAATGCAATTTTGTTACAG
TTTGTACTGTTACTGGGCCCTAGGCTTGGGTGGCTGTCCCTTGCCTGTCAGCCAGCAGGGTCAG
GACAGTGGCTCAGGGTGACTTTCTTGGGGCCTAGCATATGGTTTTTCAGCCCACACTGGCAAAT
GTGGTTTTGTTAACACAGCCAACTTACTTTCCAAAAAATAAAGATAACTGGTTCTGATATCCA

hide sequence

RefSeq Acc Id:

XM_006251392 ⟹ XP_006251454

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	76,987,242 - 77,002,671 (-)	NCBI
Rnor_6.0	14	82,272,322 - 82,287,739 (-)	NCBI
Rnor_5.0	14	82,961,882 - 82,977,113 (-)	NCBI

Sequence:

show sequence

CCCAGTTCAGTGAGCTGTGGCAGCGGGGGTGGCGGGAGCAGCTGGCGCCGTGCGGTCCGCTCCG
GCGAGGGGACTCACCGGTGGGGTGGGCGGCCGGCCACTGGGACAGAGGAGAGCCTGGAAGAGCC
GGCCGAGAGCCGAAGCCGGAGCCGCGAGTGGTGAGCTGGGCTCTAGCGGCGGCCGCCAGTCTCC
GCAGCGGCGCCGGAGCCGGGTGTGGGGGGTTGCAGCATGCCCGCGCGCATCGCTTGAGGACGCC
ACGGCCCCAGCTCCGGAGCCATGGTAGTCCCGGCCTGCGTGCTAGTGTTCTGCGTGGCGGTCGT
GGCTGGAGTTACTTCCGAGCCTCCCGGTCCAGAGCAGCGAGTTGGTCGGAGAGCGGCAGAGGTT
CCAGGGCCTGAACCTAGCCAGCAGGAGCAGGTGGCCTTCGGCAGTGGGGACACTGTGGAGCTGA
GCTGCCATCCGCCTGGAGGTGCCCCCACAGGCCCCACTCTCTGGGCTAAGGACGGTGTGGGGCT
GGTGGCCTCCCACCGTATCCTGGTGGGGCCTCAGAGGCTTCAAGTGCTAAACGCCACCCATGAG
GATGCTGGGGTCTACAGCTGCCAGCAGCGGCTAACCCGGCGTGTGCTGTGCCACTTTAGTGTGC
GTGTGACAGATGCTCCGTCCTCAGGAGATGACGAAGATGGGGAGGACGTGGCTGAAGACACAGG
GGCTCCTTACTGGACTCGACCGGAGCGTATGGATAAGAAACTGCTGGCTGTGCCAGCTGCAAAC
ACTGTACGCTTCCGCTGCCCAGCTGCTGGCAACCCCACCCCCTCCATCTCCTGGCTGAAGAACG
GCAAAGAATTCCGAGGGGAGCACCGCATTGGGGGCATTAAGCTCCGGCACCAGCAGTGGAGCTT
GGTCATGGAAAGTGTGGTGCCCTCTGACCGCGGCAATTACACCTGCGTGGTTGAGAACAAGTTT
GGCAGCATCCGGCAGACGTACACCCTGGATGTGCTGGAGCGCTCCCCACACCGGCCCATCCTGC
AGGCTGGGCTGCCAGCCAACCAGACAGCCGTTCTGGGCAGTGACGTGGAGTTCCACTGCAAGGT
GTACAGCGACGCACAGCCACACATCCAGTGGCTGAAGCACGTGGAGGTGAATGGGAGCAAGGTG
GGCCCTGACGGCACGCCCTACGTCACTGTACTCAAGTCCTGGATCAGTGAGAATGTGGAGGCAG
ACGCACGCCTCCGCCTGGCCAATGTGTCGGAGCGGGACGGGGGCGAGTACCTCTGTCGAGCCAC
CAATTTCATAGGCGTGGCCGAGAAGGCCTTTTGGCTTCGTGTTCACGGGCCCCAAGCAGCCGAG
GAGGAGCTGATGGAAGTTGACGAGGCTGGCAGCGTGTACGCGGGTGTCCTCAGCTACGGGGTGG
GCTTCTTCCTCTTCATCCTGGTGGTGGCGGCAGTGACGCTCTGCCGTCTGCGCAGTCCCCCAAA
GAAGGGCCTGGGCTCGCCCACCGTGCACAAGGTCTCTCGCTTCCCGCTTAAGCGACAGCAGGTG
TCCTTGGAGTCTAATTCCTCTATGAACTCCAACACACCTCTCGTCCGGATTGCCCGGCTGTCCT
CAGGAGAAGGTCCTGTCCTGGCCAATGTTTCTGAACTTGAGCTGCCTGCTGACCCCAAGTGGGA
GCTATCCAGGACCCGGCTGACACTCGGTAAGCCTCTTGGAGAAGGCTGCTTTGGACAGGTTGTC
ATGGCAGAAGCTATTGGCATCGACAAGGACCGCACTGCCAAGCCTGTCACCGTGGCCGTGAAGA
TGCTGAAAGATGATGCCACTGACAAGGACCTGTCGGACCTGGTGTCTGAGATGGAGATGATGAA
AATGATTGGCAAGCACAAGAACATCATTAACCTGTTGGGGGCCTGCACCCAGGGTGGGCCCCTG
TATGTGCTGGTGGAGTATGCAGCCAAGGGCAACCTGCGAGAGTTCCTCCGGGCACGGCGGCCTC
CAGGCATGGATTACTCCTTTGATGCCTGCAGGCTGCCAGAGGAACAGCTCACCTGCAAGGATCT
GGTGTCCTGTGCCTACCAGGTGGCACGGGGCATGGAGTACTTGGCTTCCCAGAAGTGTATTCAC
AGAGACCTGGCTGCCAGAAACGTGCTGGTGACTGAGGACAATGTGATGAAGATTGCAGACTTTG
GCCTGGCCCGAGATGTGCACAACCTGGATTACTACAAGAAGACCACAAATGGCCGGCTACCTGT
GAAGTGGATGGCACCAGAGGCCCTTTTTGACCGAGTCTACACCCATCAGAGTGATGTCTGGTCC
TTTGGTGTCCTCCTCTGGGAGATCTTTACACTGGGTGGGTCACCATATCCTGGCATCCCAGTGG
AAGAGCTTTTCAAGCTGTTGAAAGAGGGCCACCGCATGGACAAGCCAGCCAACTGCACACATGA
CCTGTACATGATCATGCGGGAATGTTGGCATGCAGTGCCTTCACAGAGGCCCACCTTCAAGCAG
TTGGTAGAGGATTTAGACCGCATCCTCACGGTGACATCAACTGACGAGTACTTGGACCTCTCGG
TGCCATTTGAACAGTACTCGCCAGGTGGCCAAGATACTCCTAGCTCCAGCTCGTCCGGGGACGA
CTCTGTGTTCACCCATGACCTGCTACCCCCAGGCCCACCCAGCAATGGGGGACCTCGGACGTGA
AGGGCCGACAGTCCCACAGACCAAGCCCCAGCCAATGTTTACGCGGACCCTAGCCCGCCCTGCT
ACTGCTGGTGTGCAGTGGACCCTAGCCAGCCCAGTGCAATGGGCCAGCAATAGACAAGACTTCC
TGCGTGTTTATCCTTGGCTCCTGGGTGCAGAGGCCCCTGGGGAACATGTACTGCTGTAGAATGA
TCTCCTGACTGGCCAGGGCCAGGAGCACCAAATGAGAATGTAAGAGGGCCCCCCCGCCCCTGTG
CGACAGTGGGGTTCTGGCTCCCTCACTCCCCACTGCTACCTTACAGGGACCGTTGTAGAGAGGG
CTGGACTTCATGTCCAGGGTGGGCCTTGGCCTTTTTGGTGCCCAAAGCTGAGCCTGTAGGGAGG
CTCTGCTCTTATGTGGCAAGCCTCTCTCCTACATGGCACCTTGTGCCTGGGGTGAGTCATAGCT
CGACACCTCCAGGCTGCCCGCTTCCCATCCTGTCCCTCAAATTACGGGTACCTGAAGGGGGGGT
GGCCATAACTTCTATCAGAAAGGTTTATTCCAGAGGAAAATGTACATTTATATAAATAGATGTT
GTGTATGATATATATAGATATATACATACATATATATAAGAATATCTATATGGAAAAAGGCAAA
GCTGAGGCCCAAGGGAGCAAGACACCCCATGGGGCTCACCAGTGAGATGGCACAGGCAGGCCGA
GAAGCAGGGGCCTTTTCTGGCATTGCAGTGTTGTTTGTATCTGGACCTGTATATTTGTAAAGCT
ATTTATCAACCCTCGGAGCTCCAGTCCCCAACCCCAGGTTCATAGCGTTTAGTCCCAGGGTATT
GCAGAAATTTTAAGTTGTAACTTATTAACAGCTGAAGAGGTTTATGCTGAATCTAGGGAGTTGC
TGAGAATGTGCGTCTGTCCTCCCACCAAGGCTGGACGTGGCCCCGTGGAGCTTGAGTGACTCTC
CTAGTTAGCCATGGCTCCAGTGAACATCTTTTTTTTATTTTGTTTCCTTTGGCCCTCTTCTGTG
GGGGATTAGATTATATAGGGACTTTCTTTAGAAGATTTTTAAAGATTTCAAGGTGAACTGGTAT
TTTTCATACAGATTATTCTAATTGTTATGTGTTCCAGGCAGGGGCCTGTGCCCAGGGAGGGGCT
GGCCCTGCAAAGAAGGTTCAGATGTTAATAGATGTCTGTTACAAGTTTATCTATCTATAATTTA
TTGAGTTTCTACAAGTTGTTTTGCTGTAGGCTTAACACTTCTATGCAGTGATTCTAGACTTTTT
ATAGCCTAGACTGCTACCTTTCAAAGCTTGGGAGAGAGTGCTGAATGCAATTTTGTTACAGTTT
GTACTGTTACTGGGCCCTAGGCTTGGGTGGCTGTCCCTTGCCTGTCAGCCAGCAGGGTCAGGAC
AGTGGCTCAGGGTGACTTTCTTGGGGCCTAGCATATGGTTTTTCAGCCCACACTGGCAAATGTG
GTTTTGTTAACACAGCCAACTTACTTTCCAAAAAATAAAGATAACTGGTTCTGATATCCA

hide sequence

RefSeq Acc Id:

XM_006251393 ⟹ XP_006251455

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	76,987,242 - 77,002,671 (-)	NCBI
Rnor_6.0	14	82,272,322 - 82,287,739 (-)	NCBI
Rnor_5.0	14	82,961,882 - 82,977,113 (-)	NCBI

Sequence:

show sequence

CCCAGTTCAGTGAGCTGTGGCAGCGGGGGTGGCGGGAGCAGCTGGCGCCGTGCGGTCCGCTCCG
GCGAGGGGACTCACCGGTGGGGTGGGCGGCCGGCCACTGGGACAGAGGAGAGCCTGGAAGAGCC
GGCCGAGAGCCGAAGCCGGAGCCGCGAGTGGTGAGCTGGGCTCTAGCGGCGGCCGCCAGTCTCC
GCAGCGGCGCCGGAGCCGGGTGTGGGGGGTTGCAGCATGCCCGCGCGCATCGCTTGAGGACGCC
ACGGCCCCAGCTCCGGAGCCATGGTAGTCCCGGCCTGCGTGCTAGTGTTCTGCGTGGCGGTCGT
GGCTGGAGTTACTTCCGAGCCTCCCGGTCCAGAGCAGCGAGTTGGTCGGAGAGCGGCAGAGGTT
CCAGGGCCTGAACCTAGCCAGCAGGAGCAGGTGGCCTTCGGCAGTGGGGACACTGTGGAGCTGA
GCTGCCATCCGCCTGGAGGTGCCCCCACAGGCCCCACTCTCTGGGCTAAGGACGGTGTGGGGCT
GGTGGCCTCCCACCGTATCCTGGTGGGGCCTCAGAGGCTTCAAGTGCTAAACGCCACCCATGAG
GATGCTGGGGTCTACAGCTGCCAGCAGCGGCTAACCCGGCGTGTGCTGTGCCACTTTAGTGTGC
GTGTGACAGATGCTCCGTCCTCAGGAGATGACGAAGATGGGGAGGACGTGGCTGAAGACACAGG
GGCTCCTTACTGGACTCGACCGGAGCGTATGGATAAGAAACTGCTGGCTGTGCCAGCTGCAAAC
ACTGTACGCTTCCGCTGCCCAGCTGCTGGCAACCCCACCCCCTCCATCTCCTGGCTGAAGAACG
GCAAAGAATTCCGAGGGGAGCACCGCATTGGGGGCATTAAGCTCCGGCACCAGCAGTGGAGCTT
GGTCATGGAAAGTGTGGTGCCCTCTGACCGCGGCAATTACACCTGCGTGGTTGAGAACAAGTTT
GGCAGCATCCGGCAGACGTACACCCTGGATGTGCTGGAGCGCTCCCCACACCGGCCCATCCTGC
AGGCTGGGCTGCCAGCCAACCAGACAGCCGTTCTGGGCAGTGACGTGGAGTTCCACTGCAAGGT
GTACAGCGACGCACAGCCACACATCCAGTGGCTGAAGCACGTGGAGGTGAATGGGAGCAAGGTG
GGCCCTGACGGCACGCCCTACGTCACTGTACTCAAGTCCTGGATCAGTGAGAATGTGGAGGCAG
ACGCACGCCTCCGCCTGGCCAATGTGTCGGAGCGGGACGGGGGCGAGTACCTCTGTCGAGCCAC
CAATTTCATAGGCGTGGCCGAGAAGGCCTTTTGGCTTCGTGTTCACGGGCCCCAAGCAGCCGAG
GAGGAGCTGATGGAAGTTGACGAGGCTGGCAGCGTGTACGCGGGTGTCCTCAGCTACGGGGTGG
GCTTCTTCCTCTTCATCCTGGTGGTGGCGGCAGTGACGCTCTGCCGTCTGCGCAGTCCCCCAAA
GAAGGGCCTGGGCTCGCCCACCGTGCACAAGGTCTCTCGCTTCCCGCTTAAGCGACAGGTGTCC
TTGGAGTCTAATTCCTCTATGAACTCCAACACACCTCTCGTCCGGATTGCCCGGCTGTCCTCAG
GAGAAGGTCCTGTCCTGGCCAATGTTTCTGAACTTGAGCTGCCTGCTGACCCCAAGTGGGAGCT
ATCCAGGACCCGGCTGACACTCGGTAAGCCTCTTGGAGAAGGCTGCTTTGGACAGGTTGTCATG
GCAGAAGCTATTGGCATCGACAAGGACCGCACTGCCAAGCCTGTCACCGTGGCCGTGAAGATGC
TGAAAGATGATGCCACTGACAAGGACCTGTCGGACCTGGTGTCTGAGATGGAGATGATGAAAAT
GATTGGCAAGCACAAGAACATCATTAACCTGTTGGGGGCCTGCACCCAGGGTGGGCCCCTGTAT
GTGCTGGTGGAGTATGCAGCCAAGGGCAACCTGCGAGAGTTCCTCCGGGCACGGCGGCCTCCAG
GCATGGATTACTCCTTTGATGCCTGCAGGCTGCCAGAGGAACAGCTCACCTGCAAGGATCTGGT
GTCCTGTGCCTACCAGGTGGCACGGGGCATGGAGTACTTGGCTTCCCAGAAGTGTATTCACAGA
GACCTGGCTGCCAGAAACGTGCTGGTGACTGAGGACAATGTGATGAAGATTGCAGACTTTGGCC
TGGCCCGAGATGTGCACAACCTGGATTACTACAAGAAGACCACAAATGGCCGGCTACCTGTGAA
GTGGATGGCACCAGAGGCCCTTTTTGACCGAGTCTACACCCATCAGAGTGATGTCTGGTCCTTT
GGTGTCCTCCTCTGGGAGATCTTTACACTGGGTGGGTCACCATATCCTGGCATCCCAGTGGAAG
AGCTTTTCAAGCTGTTGAAAGAGGGCCACCGCATGGACAAGCCAGCCAACTGCACACATGACCT
GTACATGATCATGCGGGAATGTTGGCATGCAGTGCCTTCACAGAGGCCCACCTTCAAGCAGTTG
GTAGAGGATTTAGACCGCATCCTCACGGTGACATCAACTGACGAGTACTTGGACCTCTCGGTGC
CATTTGAACAGTACTCGCCAGGTGGCCAAGATACTCCTAGCTCCAGCTCGTCCGGGGACGACTC
TGTGTTCACCCATGACCTGCTACCCCCAGGCCCACCCAGCAATGGGGGACCTCGGACGTGAAGG
GCCGACAGTCCCACAGACCAAGCCCCAGCCAATGTTTACGCGGACCCTAGCCCGCCCTGCTACT
GCTGGTGTGCAGTGGACCCTAGCCAGCCCAGTGCAATGGGCCAGCAATAGACAAGACTTCCTGC
GTGTTTATCCTTGGCTCCTGGGTGCAGAGGCCCCTGGGGAACATGTACTGCTGTAGAATGATCT
CCTGACTGGCCAGGGCCAGGAGCACCAAATGAGAATGTAAGAGGGCCCCCCCGCCCCTGTGCGA
CAGTGGGGTTCTGGCTCCCTCACTCCCCACTGCTACCTTACAGGGACCGTTGTAGAGAGGGCTG
GACTTCATGTCCAGGGTGGGCCTTGGCCTTTTTGGTGCCCAAAGCTGAGCCTGTAGGGAGGCTC
TGCTCTTATGTGGCAAGCCTCTCTCCTACATGGCACCTTGTGCCTGGGGTGAGTCATAGCTCGA
CACCTCCAGGCTGCCCGCTTCCCATCCTGTCCCTCAAATTACGGGTACCTGAAGGGGGGGTGGC
CATAACTTCTATCAGAAAGGTTTATTCCAGAGGAAAATGTACATTTATATAAATAGATGTTGTG
TATGATATATATAGATATATACATACATATATATAAGAATATCTATATGGAAAAAGGCAAAGCT
GAGGCCCAAGGGAGCAAGACACCCCATGGGGCTCACCAGTGAGATGGCACAGGCAGGCCGAGAA
GCAGGGGCCTTTTCTGGCATTGCAGTGTTGTTTGTATCTGGACCTGTATATTTGTAAAGCTATT
TATCAACCCTCGGAGCTCCAGTCCCCAACCCCAGGTTCATAGCGTTTAGTCCCAGGGTATTGCA
GAAATTTTAAGTTGTAACTTATTAACAGCTGAAGAGGTTTATGCTGAATCTAGGGAGTTGCTGA
GAATGTGCGTCTGTCCTCCCACCAAGGCTGGACGTGGCCCCGTGGAGCTTGAGTGACTCTCCTA
GTTAGCCATGGCTCCAGTGAACATCTTTTTTTTATTTTGTTTCCTTTGGCCCTCTTCTGTGGGG
GATTAGATTATATAGGGACTTTCTTTAGAAGATTTTTAAAGATTTCAAGGTGAACTGGTATTTT
TCATACAGATTATTCTAATTGTTATGTGTTCCAGGCAGGGGCCTGTGCCCAGGGAGGGGCTGGC
CCTGCAAAGAAGGTTCAGATGTTAATAGATGTCTGTTACAAGTTTATCTATCTATAATTTATTG
AGTTTCTACAAGTTGTTTTGCTGTAGGCTTAACACTTCTATGCAGTGATTCTAGACTTTTTATA
GCCTAGACTGCTACCTTTCAAAGCTTGGGAGAGAGTGCTGAATGCAATTTTGTTACAGTTTGTA
CTGTTACTGGGCCCTAGGCTTGGGTGGCTGTCCCTTGCCTGTCAGCCAGCAGGGTCAGGACAGT
GGCTCAGGGTGACTTTCTTGGGGCCTAGCATATGGTTTTTCAGCCCACACTGGCAAATGTGGTT
TTGTTAACACAGCCAACTTACTTTCCAAAAAATAAAGATAACTGGTTCTGATATCCA

hide sequence

RefSeq Acc Id:

XM_006251394 ⟹ XP_006251456

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	76,987,242 - 77,002,671 (-)	NCBI
Rnor_6.0	14	82,272,322 - 82,287,739 (-)	NCBI
Rnor_5.0	14	82,961,882 - 82,977,113 (-)	NCBI

Sequence:

show sequence

CCCAGTTCAGTGAGCTGTGGCAGCGGGGGTGGCGGGAGCAGCTGGCGCCGTGCGGTCCGCTCCG
GCGAGGGGACTCACCGGTGGGGTGGGCGGCCGGCCACTGGGACAGAGGAGAGCCTGGAAGAGCC
GGCCGAGAGCCGAAGCCGGAGCCGCGAGTGGTGAGCTGGGCTCTAGCGGCGGCCGCCAGTCTCC
GCAGCGGCGCCGGAGCCGGGTGTGGGGGGTTGCAGCATGCCCGCGCGCATCGCTTGAGGACGCC
ACGGCCCCAGCTCCGGAGCCATGGTAGTCCCGGCCTGCGTGCTAGTGTTCTGCGTGGCGGTCGT
GGCTGGAGTTACTTCCGAGCCTCCCGGTCCAGAGCAGCGAGTTGGTCGGAGAGCGGCAGAGGTT
CCAGGGCCTGAACCTAGCCAGCAGGAGCAGGTGGCCTTCGGCAGTGGGGACACTGTGGAGCTGA
GCTGCCATCCGCCTGGAGGTGCCCCCACAGGCCCCACTCTCTGGGCTAAGGACGGTGTGGGGCT
GGTGGCCTCCCACCGTATCCTGGTGGGGCCTCAGAGGCTTCAAGTGCTAAACGCCACCCATGAG
GATGCTGGGGTCTACAGCTGCCAGCAGCGGCTAACCCGGCGTGTGCTGTGCCACTTTAGTGTGC
GTGTGACAGATGCTCCGTCCTCAGGAGATGACGAAGATGGGGAGGACGTGGCTGAAGACACAGG
GGCTCCTTACTGGACTCGACCGGAGCGTATGGATAAGAAACTGCTGGCTGTGCCAGCTGCAAAC
ACTGTACGCTTCCGCTGCCCAGCTGCTGGCAACCCCACCCCCTCCATCTCCTGGCTGAAGAACG
GCAAAGAATTCCGAGGGGAGCACCGCATTGGGGGCATTAAGCTCCGGCACCAGCAGTGGAGCTT
GGTCATGGAAAGTGTGGTGCCCTCTGACCGCGGCAATTACACCTGCGTGGTTGAGAACAAGTTT
GGCAGCATCCGGCAGACGTACACCCTGGATGTGCTGGAGCGCTCCCCACACCGGCCCATCCTGC
AGGCTGGGCTGCCAGCCAACCAGACAGCCGTTCTGGGCAGTGACGTGGAGTTCCACTGCAAGGT
GTACAGCGACGCACAGCCACACATCCAGTGGCTGAAGCACGTGGAGGTGAATGGGAGCAAGGTG
GGCCCTGACGGCACGCCCTACGTCACTGTACTCAAGACTGCAGGAGCTAACACCACCGACAGGG
AGCTAGAGGTTCTGTCCTTGCACAATGTCACCTTTGAGGATGCGGGGGAGTACACCTGCCTGGC
GGGCAATTCTATCGGGTTTTCCCATCACTCTGCGTGGCTGGTGGTGCTGCCAGCCGAGGAGGAG
CTGATGGAAGTTGACGAGGCTGGCAGCGTGTACGCGGGTGTCCTCAGCTACGGGGTGGGCTTCT
TCCTCTTCATCCTGGTGGTGGCGGCAGTGACGCTCTGCCGTCTGCGCAGTCCCCCAAAGAAGGG
CCTGGGCTCGCCCACCGTGCACAAGGTCTCTCGCTTCCCGCTTAAGCGACAGGTAACAGTGTCC
TTGGAGTCTAATTCCTCTATGAACTCCAACACACCTCTCGTCCGGATTGCCCGGCTGTCCTCAG
GAGAAGGTCCTGTCCTGGCCAATGTTTCTGAACTTGAGCTGCCTGCTGACCCCAAGTGGGAGCT
ATCCAGGACCCGGCTGACACTCGGTAAGCCTCTTGGAGAAGGCTGCTTTGGACAGGTTGTCATG
GCAGAAGCTATTGGCATCGACAAGGACCGCACTGCCAAGCCTGTCACCGTGGCCGTGAAGATGC
TGAAAGATGATGCCACTGACAAGGACCTGTCGGACCTGGTGTCTGAGATGGAGATGATGAAAAT
GATTGGCAAGCACAAGAACATCATTAACCTGTTGGGGGCCTGCACCCAGGGTGGGCCCCTGTAT
GTGCTGGTGGAGTATGCAGCCAAGGGCAACCTGCGAGAGTTCCTCCGGGCACGGCGGCCTCCAG
GCATGGATTACTCCTTTGATGCCTGCAGGCTGCCAGAGGAACAGCTCACCTGCAAGGATCTGGT
GTCCTGTGCCTACCAGGTGGCACGGGGCATGGAGTACTTGGCTTCCCAGAAGTGTATTCACAGA
GACCTGGCTGCCAGAAACGTGCTGGTGACTGAGGACAATGTGATGAAGATTGCAGACTTTGGCC
TGGCCCGAGATGTGCACAACCTGGATTACTACAAGAAGACCACAAATGGCCGGCTACCTGTGAA
GTGGATGGCACCAGAGGCCCTTTTTGACCGAGTCTACACCCATCAGAGTGATGTCTGGTCCTTT
GGTGTCCTCCTCTGGGAGATCTTTACACTGGGTGGGTCACCATATCCTGGCATCCCAGTGGAAG
AGCTTTTCAAGCTGTTGAAAGAGGGCCACCGCATGGACAAGCCAGCCAACTGCACACATGACCT
GTACATGATCATGCGGGAATGTTGGCATGCAGTGCCTTCACAGAGGCCCACCTTCAAGCAGTTG
GTAGAGGATTTAGACCGCATCCTCACGGTGACATCAACTGACGAGTACTTGGACCTCTCGGTGC
CATTTGAACAGTACTCGCCAGGTGGCCAAGATACTCCTAGCTCCAGCTCGTCCGGGGACGACTC
TGTGTTCACCCATGACCTGCTACCCCCAGGCCCACCCAGCAATGGGGGACCTCGGACGTGAAGG
GCCGACAGTCCCACAGACCAAGCCCCAGCCAATGTTTACGCGGACCCTAGCCCGCCCTGCTACT
GCTGGTGTGCAGTGGACCCTAGCCAGCCCAGTGCAATGGGCCAGCAATAGACAAGACTTCCTGC
GTGTTTATCCTTGGCTCCTGGGTGCAGAGGCCCCTGGGGAACATGTACTGCTGTAGAATGATCT
CCTGACTGGCCAGGGCCAGGAGCACCAAATGAGAATGTAAGAGGGCCCCCCCGCCCCTGTGCGA
CAGTGGGGTTCTGGCTCCCTCACTCCCCACTGCTACCTTACAGGGACCGTTGTAGAGAGGGCTG
GACTTCATGTCCAGGGTGGGCCTTGGCCTTTTTGGTGCCCAAAGCTGAGCCTGTAGGGAGGCTC
TGCTCTTATGTGGCAAGCCTCTCTCCTACATGGCACCTTGTGCCTGGGGTGAGTCATAGCTCGA
CACCTCCAGGCTGCCCGCTTCCCATCCTGTCCCTCAAATTACGGGTACCTGAAGGGGGGGTGGC
CATAACTTCTATCAGAAAGGTTTATTCCAGAGGAAAATGTACATTTATATAAATAGATGTTGTG
TATGATATATATAGATATATACATACATATATATAAGAATATCTATATGGAAAAAGGCAAAGCT
GAGGCCCAAGGGAGCAAGACACCCCATGGGGCTCACCAGTGAGATGGCACAGGCAGGCCGAGAA
GCAGGGGCCTTTTCTGGCATTGCAGTGTTGTTTGTATCTGGACCTGTATATTTGTAAAGCTATT
TATCAACCCTCGGAGCTCCAGTCCCCAACCCCAGGTTCATAGCGTTTAGTCCCAGGGTATTGCA
GAAATTTTAAGTTGTAACTTATTAACAGCTGAAGAGGTTTATGCTGAATCTAGGGAGTTGCTGA
GAATGTGCGTCTGTCCTCCCACCAAGGCTGGACGTGGCCCCGTGGAGCTTGAGTGACTCTCCTA
GTTAGCCATGGCTCCAGTGAACATCTTTTTTTTATTTTGTTTCCTTTGGCCCTCTTCTGTGGGG
GATTAGATTATATAGGGACTTTCTTTAGAAGATTTTTAAAGATTTCAAGGTGAACTGGTATTTT
TCATACAGATTATTCTAATTGTTATGTGTTCCAGGCAGGGGCCTGTGCCCAGGGAGGGGCTGGC
CCTGCAAAGAAGGTTCAGATGTTAATAGATGTCTGTTACAAGTTTATCTATCTATAATTTATTG
AGTTTCTACAAGTTGTTTTGCTGTAGGCTTAACACTTCTATGCAGTGATTCTAGACTTTTTATA
GCCTAGACTGCTACCTTTCAAAGCTTGGGAGAGAGTGCTGAATGCAATTTTGTTACAGTTTGTA
CTGTTACTGGGCCCTAGGCTTGGGTGGCTGTCCCTTGCCTGTCAGCCAGCAGGGTCAGGACAGT
GGCTCAGGGTGACTTTCTTGGGGCCTAGCATATGGTTTTTCAGCCCACACTGGCAAATGTGGTT
TTGTTAACACAGCCAACTTACTTTCCAAAAAATAAAGATAACTGGTTCTGATATCCA

hide sequence

RefSeq Acc Id:

XM_006251395 ⟹ XP_006251457

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	76,987,242 - 77,002,670 (-)	NCBI
Rnor_6.0	14	82,272,322 - 82,287,739 (-)	NCBI
Rnor_5.0	14	82,961,882 - 82,977,113 (-)	NCBI

Sequence:

show sequence

CCCAGTTCAGTGAGCTGTGGCAGCGGGGGTGGCGGGAGCAGCTGGCGCCGTGCGGTCCGCTCCG
GCGAGGGGACTCACCGGTGGGGTGGGCGGCCGGCCACTGGGACAGAGGAGAGCCTGGAAGAGCC
GGCCGAGAGCCGAAGCCGGAGCCGCGAGTGGTGAGCTGGGCTCTAGCGGCGGCCGCCAGTCTCC
GCAGCGGCGCCGGAGCCGGGTGTGGGGGGTTGCAGCATGCCCGCGCGCATCGCTTGAGGACGCC
ACGGCCCCAGCTCCGGAGCCATGGTAGTCCCGGCCTGCGTGCTAGTGTTCTGCGTGGCGGTCGT
GGCTGGAGTTACTTCCGAGCCTCCCGGTCCAGAGCAGCGAGTTGGTCGGAGAGCGGCAGAGGTT
CCAGGGCCTGAACCTAGCCAGCAGGAGCAGGTGGCCTTCGGCAGTGGGGACACTGTGGAGCTGA
GCTGCCATCCGCCTGGAGGTGCCCCCACAGGCCCCACTCTCTGGGCTAAGGACGGTGTGGGGCT
GGTGGCCTCCCACCGTATCCTGGTGGGGCCTCAGAGGCTTCAAGTGCTAAACGCCACCCATGAG
GATGCTGGGGTCTACAGCTGCCAGCAGCGGCTAACCCGGCGTGTGCTGTGCCACTTTAGTGTGC
GTGTGACAGATGCTCCGTCCTCAGGAGATGACGAAGATGGGGAGGACGTGGCTGAAGACACAGG
GGCTCCTTACTGGACTCGACCGGAGCGTATGGATAAGAAACTGCTGGCTGTGCCAGCTGCAAAC
ACTGTACGCTTCCGCTGCCCAGCTGCTGGCAACCCCACCCCCTCCATCTCCTGGCTGAAGAACG
GCAAAGAATTCCGAGGGGAGCACCGCATTGGGGGCATTAAGCTCCGGCACCAGCAGTGGAGCTT
GGTCATGGAAAGTGTGGTGCCCTCTGACCGCGGCAATTACACCTGCGTGGTTGAGAACAAGTTT
GGCAGCATCCGGCAGACGTACACCCTGGATGTGCTGGAGCGCTCCCCACACCGGCCCATCCTGC
AGGCTGGGCTGCCAGCCAACCAGACAGCCGTTCTGGGCAGTGACGTGGAGTTCCACTGCAAGGT
GTACAGCGACGCACAGCCACACATCCAGTGGCTGAAGCACGTGGAGGTGAATGGGAGCAAGGTG
GGCCCTGACGGCACGCCCTACGTCACTGTACTCAAGACTGCAGGAGCTAACACCACCGACAGGG
AGCTAGAGGTTCTGTCCTTGCACAATGTCACCTTTGAGGATGCGGGGGAGTACACCTGCCTGGC
GGGCAATTCTATCGGGTTTTCCCATCACTCTGCGTGGCTGGTGGTGCTGCCAGCCGAGGAGGAG
CTGATGGAAGTTGACGAGGCTGGCAGCGTGTACGCGGGTGTCCTCAGCTACGGGGTGGGCTTCT
TCCTCTTCATCCTGGTGGTGGCGGCAGTGACGCTCTGCCGTCTGCGCAGTCCCCCAAAGAAGGG
CCTGGGCTCGCCCACCGTGCACAAGGTCTCTCGCTTCCCGCTTAAGCGACAGCAGGTGTCCTTG
GAGTCTAATTCCTCTATGAACTCCAACACACCTCTCGTCCGGATTGCCCGGCTGTCCTCAGGAG
AAGGTCCTGTCCTGGCCAATGTTTCTGAACTTGAGCTGCCTGCTGACCCCAAGTGGGAGCTATC
CAGGACCCGGCTGACACTCGGTAAGCCTCTTGGAGAAGGCTGCTTTGGACAGGTTGTCATGGCA
GAAGCTATTGGCATCGACAAGGACCGCACTGCCAAGCCTGTCACCGTGGCCGTGAAGATGCTGA
AAGATGATGCCACTGACAAGGACCTGTCGGACCTGGTGTCTGAGATGGAGATGATGAAAATGAT
TGGCAAGCACAAGAACATCATTAACCTGTTGGGGGCCTGCACCCAGGGTGGGCCCCTGTATGTG
CTGGTGGAGTATGCAGCCAAGGGCAACCTGCGAGAGTTCCTCCGGGCACGGCGGCCTCCAGGCA
TGGATTACTCCTTTGATGCCTGCAGGCTGCCAGAGGAACAGCTCACCTGCAAGGATCTGGTGTC
CTGTGCCTACCAGGTGGCACGGGGCATGGAGTACTTGGCTTCCCAGAAGTGTATTCACAGAGAC
CTGGCTGCCAGAAACGTGCTGGTGACTGAGGACAATGTGATGAAGATTGCAGACTTTGGCCTGG
CCCGAGATGTGCACAACCTGGATTACTACAAGAAGACCACAAATGGCCGGCTACCTGTGAAGTG
GATGGCACCAGAGGCCCTTTTTGACCGAGTCTACACCCATCAGAGTGATGTCTGGTCCTTTGGT
GTCCTCCTCTGGGAGATCTTTACACTGGGTGGGTCACCATATCCTGGCATCCCAGTGGAAGAGC
TTTTCAAGCTGTTGAAAGAGGGCCACCGCATGGACAAGCCAGCCAACTGCACACATGACCTGTA
CATGATCATGCGGGAATGTTGGCATGCAGTGCCTTCACAGAGGCCCACCTTCAAGCAGTTGGTA
GAGGATTTAGACCGCATCCTCACGGTGACATCAACTGACGAGTACTTGGACCTCTCGGTGCCAT
TTGAACAGTACTCGCCAGGTGGCCAAGATACTCCTAGCTCCAGCTCGTCCGGGGACGACTCTGT
GTTCACCCATGACCTGCTACCCCCAGGCCCACCCAGCAATGGGGGACCTCGGACGTGAAGGGCC
GACAGTCCCACAGACCAAGCCCCAGCCAATGTTTACGCGGACCCTAGCCCGCCCTGCTACTGCT
GGTGTGCAGTGGACCCTAGCCAGCCCAGTGCAATGGGCCAGCAATAGACAAGACTTCCTGCGTG
TTTATCCTTGGCTCCTGGGTGCAGAGGCCCCTGGGGAACATGTACTGCTGTAGAATGATCTCCT
GACTGGCCAGGGCCAGGAGCACCAAATGAGAATGTAAGAGGGCCCCCCCGCCCCTGTGCGACAG
TGGGGTTCTGGCTCCCTCACTCCCCACTGCTACCTTACAGGGACCGTTGTAGAGAGGGCTGGAC
TTCATGTCCAGGGTGGGCCTTGGCCTTTTTGGTGCCCAAAGCTGAGCCTGTAGGGAGGCTCTGC
TCTTATGTGGCAAGCCTCTCTCCTACATGGCACCTTGTGCCTGGGGTGAGTCATAGCTCGACAC
CTCCAGGCTGCCCGCTTCCCATCCTGTCCCTCAAATTACGGGTACCTGAAGGGGGGGTGGCCAT
AACTTCTATCAGAAAGGTTTATTCCAGAGGAAAATGTACATTTATATAAATAGATGTTGTGTAT
GATATATATAGATATATACATACATATATATAAGAATATCTATATGGAAAAAGGCAAAGCTGAG
GCCCAAGGGAGCAAGACACCCCATGGGGCTCACCAGTGAGATGGCACAGGCAGGCCGAGAAGCA
GGGGCCTTTTCTGGCATTGCAGTGTTGTTTGTATCTGGACCTGTATATTTGTAAAGCTATTTAT
CAACCCTCGGAGCTCCAGTCCCCAACCCCAGGTTCATAGCGTTTAGTCCCAGGGTATTGCAGAA
ATTTTAAGTTGTAACTTATTAACAGCTGAAGAGGTTTATGCTGAATCTAGGGAGTTGCTGAGAA
TGTGCGTCTGTCCTCCCACCAAGGCTGGACGTGGCCCCGTGGAGCTTGAGTGACTCTCCTAGTT
AGCCATGGCTCCAGTGAACATCTTTTTTTTATTTTGTTTCCTTTGGCCCTCTTCTGTGGGGGAT
TAGATTATATAGGGACTTTCTTTAGAAGATTTTTAAAGATTTCAAGGTGAACTGGTATTTTTCA
TACAGATTATTCTAATTGTTATGTGTTCCAGGCAGGGGCCTGTGCCCAGGGAGGGGCTGGCCCT
GCAAAGAAGGTTCAGATGTTAATAGATGTCTGTTACAAGTTTATCTATCTATAATTTATTGAGT
TTCTACAAGTTGTTTTGCTGTAGGCTTAACACTTCTATGCAGTGATTCTAGACTTTTTATAGCC
TAGACTGCTACCTTTCAAAGCTTGGGAGAGAGTGCTGAATGCAATTTTGTTACAGTTTGTACTG
TTACTGGGCCCTAGGCTTGGGTGGCTGTCCCTTGCCTGTCAGCCAGCAGGGTCAGGACAGTGGC
TCAGGGTGACTTTCTTGGGGCCTAGCATATGGTTTTTCAGCCCACACTGGCAAATGTGGTTTTG
TTAACACAGCCAACTTACTTTCCAAAAAATAAAGATAACTGGTTCTGATATCCA

hide sequence

RefSeq Acc Id:

XM_006251396 ⟹ XP_006251458

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	76,987,242 - 77,002,670 (-)	NCBI
Rnor_6.0	14	82,272,322 - 82,287,739 (-)	NCBI
Rnor_5.0	14	82,961,882 - 82,977,113 (-)	NCBI

Sequence:

show sequence

CCCAGTTCAGTGAGCTGTGGCAGCGGGGGTGGCGGGAGCAGCTGGCGCCGTGCGGTCCGCTCCG
GCGAGGGGACTCACCGGTGGGGTGGGCGGCCGGCCACTGGGACAGAGGAGAGCCTGGAAGAGCC
GGCCGAGAGCCGAAGCCGGAGCCGCGAGTGGTGAGCTGGGCTCTAGCGGCGGCCGCCAGTCTCC
GCAGCGGCGCCGGAGCCGGGTGTGGGGGGTTGCAGCATGCCCGCGCGCATCGCTTGAGGACGCC
ACGGCCCCAGCTCCGGAGCCATGGTAGTCCCGGCCTGCGTGCTAGTGTTCTGCGTGGCGGTCGT
GGCTGGAGTTACTTCCGAGCCTCCCGGTCCAGAGCAGCGAGTTGGTCGGAGAGCGGCAGAGGTT
CCAGGGCCTGAACCTAGCCAGCAGGAGCAGGTGGCCTTCGGCAGTGGGGACACTGTGGAGCTGA
GCTGCCATCCGCCTGGAGGTGCCCCCACAGGCCCCACTCTCTGGGCTAAGGACGGTGTGGGGCT
GGTGGCCTCCCACCGTATCCTGGTGGGGCCTCAGAGGCTTCAAGTGCTAAACGCCACCCATGAG
GATGCTGGGGTCTACAGCTGCCAGCAGCGGCTAACCCGGCGTGTGCTGTGCCACTTTAGTGTGC
GTGTGACAGATGCTCCGTCCTCAGGAGATGACGAAGATGGGGAGGACGTGGCTGAAGACACAGG
GGCTCCTTACTGGACTCGACCGGAGCGTATGGATAAGAAACTGCTGGCTGTGCCAGCTGCAAAC
ACTGTACGCTTCCGCTGCCCAGCTGCTGGCAACCCCACCCCCTCCATCTCCTGGCTGAAGAACG
GCAAAGAATTCCGAGGGGAGCACCGCATTGGGGGCATTAAGCTCCGGCACCAGCAGTGGAGCTT
GGTCATGGAAAGTGTGGTGCCCTCTGACCGCGGCAATTACACCTGCGTGGTTGAGAACAAGTTT
GGCAGCATCCGGCAGACGTACACCCTGGATGTGCTGGAGCGCTCCCCACACCGGCCCATCCTGC
AGGCTGGGCTGCCAGCCAACCAGACAGCCGTTCTGGGCAGTGACGTGGAGTTCCACTGCAAGGT
GTACAGCGACGCACAGCCACACATCCAGTGGCTGAAGCACGTGGAGGTGAATGGGAGCAAGGTG
GGCCCTGACGGCACGCCCTACGTCACTGTACTCAAGACTGCAGGAGCTAACACCACCGACAGGG
AGCTAGAGGTTCTGTCCTTGCACAATGTCACCTTTGAGGATGCGGGGGAGTACACCTGCCTGGC
GGGCAATTCTATCGGGTTTTCCCATCACTCTGCGTGGCTGGTGGTGCTGCCAGCCGAGGAGGAG
CTGATGGAAGTTGACGAGGCTGGCAGCGTGTACGCGGGTGTCCTCAGCTACGGGGTGGGCTTCT
TCCTCTTCATCCTGGTGGTGGCGGCAGTGACGCTCTGCCGTCTGCGCAGTCCCCCAAAGAAGGG
CCTGGGCTCGCCCACCGTGCACAAGGTCTCTCGCTTCCCGCTTAAGCGACAGGTGTCCTTGGAG
TCTAATTCCTCTATGAACTCCAACACACCTCTCGTCCGGATTGCCCGGCTGTCCTCAGGAGAAG
GTCCTGTCCTGGCCAATGTTTCTGAACTTGAGCTGCCTGCTGACCCCAAGTGGGAGCTATCCAG
GACCCGGCTGACACTCGGTAAGCCTCTTGGAGAAGGCTGCTTTGGACAGGTTGTCATGGCAGAA
GCTATTGGCATCGACAAGGACCGCACTGCCAAGCCTGTCACCGTGGCCGTGAAGATGCTGAAAG
ATGATGCCACTGACAAGGACCTGTCGGACCTGGTGTCTGAGATGGAGATGATGAAAATGATTGG
CAAGCACAAGAACATCATTAACCTGTTGGGGGCCTGCACCCAGGGTGGGCCCCTGTATGTGCTG
GTGGAGTATGCAGCCAAGGGCAACCTGCGAGAGTTCCTCCGGGCACGGCGGCCTCCAGGCATGG
ATTACTCCTTTGATGCCTGCAGGCTGCCAGAGGAACAGCTCACCTGCAAGGATCTGGTGTCCTG
TGCCTACCAGGTGGCACGGGGCATGGAGTACTTGGCTTCCCAGAAGTGTATTCACAGAGACCTG
GCTGCCAGAAACGTGCTGGTGACTGAGGACAATGTGATGAAGATTGCAGACTTTGGCCTGGCCC
GAGATGTGCACAACCTGGATTACTACAAGAAGACCACAAATGGCCGGCTACCTGTGAAGTGGAT
GGCACCAGAGGCCCTTTTTGACCGAGTCTACACCCATCAGAGTGATGTCTGGTCCTTTGGTGTC
CTCCTCTGGGAGATCTTTACACTGGGTGGGTCACCATATCCTGGCATCCCAGTGGAAGAGCTTT
TCAAGCTGTTGAAAGAGGGCCACCGCATGGACAAGCCAGCCAACTGCACACATGACCTGTACAT
GATCATGCGGGAATGTTGGCATGCAGTGCCTTCACAGAGGCCCACCTTCAAGCAGTTGGTAGAG
GATTTAGACCGCATCCTCACGGTGACATCAACTGACGAGTACTTGGACCTCTCGGTGCCATTTG
AACAGTACTCGCCAGGTGGCCAAGATACTCCTAGCTCCAGCTCGTCCGGGGACGACTCTGTGTT
CACCCATGACCTGCTACCCCCAGGCCCACCCAGCAATGGGGGACCTCGGACGTGAAGGGCCGAC
AGTCCCACAGACCAAGCCCCAGCCAATGTTTACGCGGACCCTAGCCCGCCCTGCTACTGCTGGT
GTGCAGTGGACCCTAGCCAGCCCAGTGCAATGGGCCAGCAATAGACAAGACTTCCTGCGTGTTT
ATCCTTGGCTCCTGGGTGCAGAGGCCCCTGGGGAACATGTACTGCTGTAGAATGATCTCCTGAC
TGGCCAGGGCCAGGAGCACCAAATGAGAATGTAAGAGGGCCCCCCCGCCCCTGTGCGACAGTGG
GGTTCTGGCTCCCTCACTCCCCACTGCTACCTTACAGGGACCGTTGTAGAGAGGGCTGGACTTC
ATGTCCAGGGTGGGCCTTGGCCTTTTTGGTGCCCAAAGCTGAGCCTGTAGGGAGGCTCTGCTCT
TATGTGGCAAGCCTCTCTCCTACATGGCACCTTGTGCCTGGGGTGAGTCATAGCTCGACACCTC
CAGGCTGCCCGCTTCCCATCCTGTCCCTCAAATTACGGGTACCTGAAGGGGGGGTGGCCATAAC
TTCTATCAGAAAGGTTTATTCCAGAGGAAAATGTACATTTATATAAATAGATGTTGTGTATGAT
ATATATAGATATATACATACATATATATAAGAATATCTATATGGAAAAAGGCAAAGCTGAGGCC
CAAGGGAGCAAGACACCCCATGGGGCTCACCAGTGAGATGGCACAGGCAGGCCGAGAAGCAGGG
GCCTTTTCTGGCATTGCAGTGTTGTTTGTATCTGGACCTGTATATTTGTAAAGCTATTTATCAA
CCCTCGGAGCTCCAGTCCCCAACCCCAGGTTCATAGCGTTTAGTCCCAGGGTATTGCAGAAATT
TTAAGTTGTAACTTATTAACAGCTGAAGAGGTTTATGCTGAATCTAGGGAGTTGCTGAGAATGT
GCGTCTGTCCTCCCACCAAGGCTGGACGTGGCCCCGTGGAGCTTGAGTGACTCTCCTAGTTAGC
CATGGCTCCAGTGAACATCTTTTTTTTATTTTGTTTCCTTTGGCCCTCTTCTGTGGGGGATTAG
ATTATATAGGGACTTTCTTTAGAAGATTTTTAAAGATTTCAAGGTGAACTGGTATTTTTCATAC
AGATTATTCTAATTGTTATGTGTTCCAGGCAGGGGCCTGTGCCCAGGGAGGGGCTGGCCCTGCA
AAGAAGGTTCAGATGTTAATAGATGTCTGTTACAAGTTTATCTATCTATAATTTATTGAGTTTC
TACAAGTTGTTTTGCTGTAGGCTTAACACTTCTATGCAGTGATTCTAGACTTTTTATAGCCTAG
ACTGCTACCTTTCAAAGCTTGGGAGAGAGTGCTGAATGCAATTTTGTTACAGTTTGTACTGTTA
CTGGGCCCTAGGCTTGGGTGGCTGTCCCTTGCCTGTCAGCCAGCAGGGTCAGGACAGTGGCTCA
GGGTGACTTTCTTGGGGCCTAGCATATGGTTTTTCAGCCCACACTGGCAAATGTGGTTTTGTTA
ACACAGCCAACTTACTTTCCAAAAAATAAAGATAACTGGTTCTGATATCCA

hide sequence

Protein Sequences


Protein RefSeqs	NP_445881	(Get FASTA)	NCBI Sequence Viewer
	XP_006251452	(Get FASTA)	NCBI Sequence Viewer
	XP_006251454	(Get FASTA)	NCBI Sequence Viewer
	XP_006251455	(Get FASTA)	NCBI Sequence Viewer
	XP_006251456	(Get FASTA)	NCBI Sequence Viewer
	XP_006251457	(Get FASTA)	NCBI Sequence Viewer
	XP_006251458	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF97795	(Get FASTA)	NCBI Sequence Viewer
	BAA77280	(Get FASTA)	NCBI Sequence Viewer
	BAA77281	(Get FASTA)	NCBI Sequence Viewer
	EDM00115	(Get FASTA)	NCBI Sequence Viewer
	EDM00116	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_445881 ⟸ NM_053429

- Peptide Label:

precursor

- Sequence:

show sequence

MVVPACVLVFCVAVVAGVTSEPPGPEQRVGRRAAEVPGPEPSQQEQVAFGSGDTVELSCHPPGG
APTGPTLWAKDGVGLVASHRILVGPQRLQVLNATHEDAGVYSCQQRLTRRVLCHFSVRVTDAPS
SGDDEDGEDVAEDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSIPWLKNGKEFRGE
HRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPAN
QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDRELEVLSL
HNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEELMEVDEAGSVYAGVLSYGVGFFLFILVV
AAVTLCRLRSPPKKGLGSPTVHKVSRFPLKRQVSLESNSSMNSNTPLVRIARLSSGEGPVLANV
SELELPADPKWELSRTRLTLGKPLGEGCFGQVVMAEAIGIDKDRTAKPVTVAVKMLKDDATDKD
LSDLVSEMEMMKMIGKHKNIINLLGACTQGGPLYVLVEYAAKGNLREFLRARRPPGMDYSFDAC
RLPEEQLTCKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNLD
YYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEG
HRMDKPANCTHDLYMIMRECWHAVPSQRPTFKQLVEDLDRILTVTSTDEYLDLSVPFEQYSPGG
QDTPSSSSSGDDSVFTHDLLPPGPPSNGGPRT

hide sequence

RefSeq Acc Id:	XP_006251458 ⟸ XM_006251396
- Peptide Label:	isoform X6
- UniProtKB:	F1LSN4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVVPACVLVFCVAVVAGVTSEPPGPEQRVGRRAAEVPGPEPSQQEQVAFGSGDTVELSCHPPGG APTGPTLWAKDGVGLVASHRILVGPQRLQVLNATHEDAGVYSCQQRLTRRVLCHFSVRVTDAPS SGDDEDGEDVAEDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGKEFRGE HRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPAN QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDRELEVLSL HNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEELMEVDEAGSVYAGVLSYGVGFFLFILVV AAVTLCRLRSPPKKGLGSPTVHKVSRFPLKRQVSLESNSSMNSNTPLVRIARLSSGEGPVLANV SELELPADPKWELSRTRLTLGKPLGEGCFGQVVMAEAIGIDKDRTAKPVTVAVKMLKDDATDKD LSDLVSEMEMMKMIGKHKNIINLLGACTQGGPLYVLVEYAAKGNLREFLRARRPPGMDYSFDAC RLPEEQLTCKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNLD YYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEG HRMDKPANCTHDLYMIMRECWHAVPSQRPTFKQLVEDLDRILTVTSTDEYLDLSVPFEQYSPGG QDTPSSSSSGDDSVFTHDLLPPGPPSNGGPRT hide sequence

RefSeq Acc Id:

XP_006251457 ⟸ XM_006251395

- Peptide Label:

isoform X5

- Sequence:

show sequence

MVVPACVLVFCVAVVAGVTSEPPGPEQRVGRRAAEVPGPEPSQQEQVAFGSGDTVELSCHPPGG
APTGPTLWAKDGVGLVASHRILVGPQRLQVLNATHEDAGVYSCQQRLTRRVLCHFSVRVTDAPS
SGDDEDGEDVAEDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGKEFRGE
HRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPAN
QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDRELEVLSL
HNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEELMEVDEAGSVYAGVLSYGVGFFLFILVV
AAVTLCRLRSPPKKGLGSPTVHKVSRFPLKRQQVSLESNSSMNSNTPLVRIARLSSGEGPVLAN
VSELELPADPKWELSRTRLTLGKPLGEGCFGQVVMAEAIGIDKDRTAKPVTVAVKMLKDDATDK
DLSDLVSEMEMMKMIGKHKNIINLLGACTQGGPLYVLVEYAAKGNLREFLRARRPPGMDYSFDA
CRLPEEQLTCKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNL
DYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKE
GHRMDKPANCTHDLYMIMRECWHAVPSQRPTFKQLVEDLDRILTVTSTDEYLDLSVPFEQYSPG
GQDTPSSSSSGDDSVFTHDLLPPGPPSNGGPRT

hide sequence

RefSeq Acc Id:

XP_006251456 ⟸ XM_006251394

- Peptide Label:

isoform X3

- Sequence:

show sequence

MVVPACVLVFCVAVVAGVTSEPPGPEQRVGRRAAEVPGPEPSQQEQVAFGSGDTVELSCHPPGG
APTGPTLWAKDGVGLVASHRILVGPQRLQVLNATHEDAGVYSCQQRLTRRVLCHFSVRVTDAPS
SGDDEDGEDVAEDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGKEFRGE
HRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPAN
QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDRELEVLSL
HNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEELMEVDEAGSVYAGVLSYGVGFFLFILVV
AAVTLCRLRSPPKKGLGSPTVHKVSRFPLKRQVTVSLESNSSMNSNTPLVRIARLSSGEGPVLA
NVSELELPADPKWELSRTRLTLGKPLGEGCFGQVVMAEAIGIDKDRTAKPVTVAVKMLKDDATD
KDLSDLVSEMEMMKMIGKHKNIINLLGACTQGGPLYVLVEYAAKGNLREFLRARRPPGMDYSFD
ACRLPEEQLTCKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHN
LDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLK
EGHRMDKPANCTHDLYMIMRECWHAVPSQRPTFKQLVEDLDRILTVTSTDEYLDLSVPFEQYSP
GGQDTPSSSSSGDDSVFTHDLLPPGPPSNGGPRT

hide sequence

RefSeq Acc Id:	XP_006251455 ⟸ XM_006251393
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2K210 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVVPACVLVFCVAVVAGVTSEPPGPEQRVGRRAAEVPGPEPSQQEQVAFGSGDTVELSCHPPGG APTGPTLWAKDGVGLVASHRILVGPQRLQVLNATHEDAGVYSCQQRLTRRVLCHFSVRVTDAPS SGDDEDGEDVAEDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGKEFRGE HRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPAN QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISENVEADARLRLA NVSERDGGEYLCRATNFIGVAEKAFWLRVHGPQAAEEELMEVDEAGSVYAGVLSYGVGFFLFIL VVAAVTLCRLRSPPKKGLGSPTVHKVSRFPLKRQVSLESNSSMNSNTPLVRIARLSSGEGPVLA NVSELELPADPKWELSRTRLTLGKPLGEGCFGQVVMAEAIGIDKDRTAKPVTVAVKMLKDDATD KDLSDLVSEMEMMKMIGKHKNIINLLGACTQGGPLYVLVEYAAKGNLREFLRARRPPGMDYSFD ACRLPEEQLTCKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHN LDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLK EGHRMDKPANCTHDLYMIMRECWHAVPSQRPTFKQLVEDLDRILTVTSTDEYLDLSVPFEQYSP GGQDTPSSSSSGDDSVFTHDLLPPGPPSNGGPRT hide sequence

RefSeq Acc Id:

XP_006251454 ⟸ XM_006251392

- Peptide Label:

isoform X2

- Sequence:

show sequence

MVVPACVLVFCVAVVAGVTSEPPGPEQRVGRRAAEVPGPEPSQQEQVAFGSGDTVELSCHPPGG
APTGPTLWAKDGVGLVASHRILVGPQRLQVLNATHEDAGVYSCQQRLTRRVLCHFSVRVTDAPS
SGDDEDGEDVAEDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGKEFRGE
HRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPAN
QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISENVEADARLRLA
NVSERDGGEYLCRATNFIGVAEKAFWLRVHGPQAAEEELMEVDEAGSVYAGVLSYGVGFFLFIL
VVAAVTLCRLRSPPKKGLGSPTVHKVSRFPLKRQQVSLESNSSMNSNTPLVRIARLSSGEGPVL
ANVSELELPADPKWELSRTRLTLGKPLGEGCFGQVVMAEAIGIDKDRTAKPVTVAVKMLKDDAT
DKDLSDLVSEMEMMKMIGKHKNIINLLGACTQGGPLYVLVEYAAKGNLREFLRARRPPGMDYSF
DACRLPEEQLTCKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVH
NLDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLL
KEGHRMDKPANCTHDLYMIMRECWHAVPSQRPTFKQLVEDLDRILTVTSTDEYLDLSVPFEQYS
PGGQDTPSSSSSGDDSVFTHDLLPPGPPSNGGPRT

hide sequence

RefSeq Acc Id:

XP_006251452 ⟸ XM_006251390

- Peptide Label:

isoform X1

- Sequence:

show sequence

MVVPACVLVFCVAVVAGVTSEPPGPEQRVGRRAAEVPGPEPSQQEQVAFGSGDTVELSCHPPGG
APTGPTLWAKDGVGLVASHRILVGPQRLQVLNATHEDAGVYSCQQRLTRRVLCHFSVRVTDAPS
SGDDEDGEDVAEDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGKEFRGE
HRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPAN
QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISENVEADARLRLA
NVSERDGGEYLCRATNFIGVAEKAFWLRVHGPQAAEEELMEVDEAGSVYAGVLSYGVGFFLFIL
VVAAVTLCRLRSPPKKGLGSPTVHKVSRFPLKRQVTVSLESNSSMNSNTPLVRIARLSSGEGPV
LANVSELELPADPKWELSRTRLTLGKPLGEGCFGQVVMAEAIGIDKDRTAKPVTVAVKMLKDDA
TDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQGGPLYVLVEYAAKGNLREFLRARRPPGMDYS
FDACRLPEEQLTCKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDV
HNLDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKL
LKEGHRMDKPANCTHDLYMIMRECWHAVPSQRPTFKQLVEDLDRILTVTSTDEYLDLSVPFEQY
SPGGQDTPSSSSSGDDSVFTHDLLPPGPPSNGGPRT

hide sequence

RefSeq Acc Id:

ENSRNOP00000072062 ⟸ ENSRNOT00000080695

RefSeq Acc Id:

ENSRNOP00000023144 ⟸ ENSRNOT00000023144

RefSeq Acc Id:

ENSRNOP00000077634 ⟸ ENSRNOT00000109689

Protein Domains

Ig-like Protein kinase

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699417

Promoter ID:

EPDNEW_R9933

Type:

single initiation site

Name:

Fgfr3_1

Description:

fibroblast growth factor receptor 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	82,287,731 - 82,287,791	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (2019)

Visual

CSV

TAB

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (2020)

Visual

CSV

TAB

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN-Lx/CubMcwi (2019)

Visual

CSV

TAB

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

Visual

CSV

TAB

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

Visual

CSV

TAB

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

Visual

CSV

TAB

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BUF/N (2020)

Visual

CSV

TAB

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

DA/OlaHsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

F344/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FXLE16/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/FarMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

HXB10/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEXF10A/StmMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

M520/NRrrcMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MWF/Hsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/OlalpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/RijCrl (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620714	AgrOrtholog
Ensembl Genes	ENSRNOG00000016818	Ensembl, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000023144	UniProtKB/TrEMBL
	ENSRNOP00000072062	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000023144	UniProtKB/TrEMBL
	ENSRNOT00000080695	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
InterPro	FGFR_TM	UniProtKB/TrEMBL
	Ig-like_dom	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_I-set	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Ig_sub2	UniProtKB/TrEMBL
	Kinase-like_dom	UniProtKB/TrEMBL
	Prot_kinase_cat_dom	UniProtKB/TrEMBL
	Protein_kinase_ATP_BS	UniProtKB/TrEMBL
	Ser-Thr/Tyr_kinase_cat_dom	UniProtKB/TrEMBL
	Tyr_kinase_AS	UniProtKB/TrEMBL
	Tyr_kinase_cat_dom	UniProtKB/TrEMBL
	Tyr_kinase_fibroblast_GF_rcpt	UniProtKB/TrEMBL
KEGG Report	rno:84489	UniProtKB/TrEMBL
NCBI Gene	84489	ENTREZGENE
Pfam	FGFR3_TM	UniProtKB/TrEMBL
	I-set	UniProtKB/TrEMBL
	Pkinase_Tyr	UniProtKB/TrEMBL
PhenoGen	Fgfr3	PhenoGen
PIRSF	FGFR	UniProtKB/TrEMBL
PRINTS	TYRKINASE	UniProtKB/TrEMBL
PROSITE	IG_LIKE	UniProtKB/TrEMBL
	PROTEIN_KINASE_ATP	UniProtKB/TrEMBL
	PROTEIN_KINASE_DOM	UniProtKB/TrEMBL
	PROTEIN_KINASE_TYR	UniProtKB/TrEMBL
SMART	IGc2	UniProtKB/TrEMBL
	SM00409	UniProtKB/TrEMBL
	TyrKc	UniProtKB/TrEMBL
Superfamily-SCOP	Kinase_like	UniProtKB/TrEMBL
	SSF48726	UniProtKB/TrEMBL
UniProt	A0A0G2K210	ENTREZGENE, UniProtKB/TrEMBL
	F1LSN4	ENTREZGENE, UniProtKB/TrEMBL
	Q9JHX9_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-01-20	Fgfr3	fibroblast growth factor receptor 3			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Fgfr3	fibroblast growth factor receptor 3			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	enriched in lung and brain	632790

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)