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ONTOLOGY REPORT - ANNOTATIONS

Term:skeletal system morphogenesis
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Accession:GO:0048705 term browser browse the term
Definition:The process in which the anatomical structures of the skeleton are generated and organized.
Synonyms:exact_synonym: skeletal morphogenesis


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skeletal system morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 2610005L07Rik RIKEN cDNA 2610005L07 gene acts_upstream_of_or_within IMP (PMID:17143286) MGI PMID:17143286 NCBI chr 8:20,016,466...20,055,498
Ensembl chr 8:20,016,466...20,055,498
Ensembl chr 8:20,016,466...20,055,498 		JBrowse link
G Acvr2b activin receptor IIB acts_upstream_of_or_within IMP
IGI		 (PMID:16991118)
(PMID:16845371)		 MGI PMID:16845371 PMID:16991118 NCBI chr 9:119,231,081...119,271,214
Ensembl chr 9:119,231,184...119,264,061 		JBrowse link
G Alx4 aristaless-like homeobox 4 acts_upstream_of_or_within IMP (PMID:9374397) MGI PMID:9374397 NCBI chr 2:93,472,779...93,511,686
Ensembl chr 2:93,472,729...93,511,684 		JBrowse link
G Ankrd11 ankyrin repeat domain 11 acts_upstream_of_or_within IMP
ISO		 (PMID:17986521) MGI PMID:17986521 GO_REF:0000008 NCBI chr 8:123,610,060...123,769,023
Ensembl chr 8:123,610,561...123,769,016 		JBrowse link
G Arid5b AT-rich interaction domain 5B acts_upstream_of_or_within IMP (PMID:17143286) MGI PMID:17143286 NCBI chr10:67,928,353...68,114,596
Ensembl chr10:67,928,350...68,114,570 		JBrowse link
G Col11a1 collagen, type XI, alpha 1 acts_upstream_of_or_within IMP (PMID:7859283) MGI PMID:7859283 NCBI chr 3:113,823,933...114,014,405
Ensembl chr 3:113,824,189...114,014,367 		JBrowse link
G Col11a2 collagen, type XI, alpha 2 acts_upstream_of_or_within IMP (PMID:11668593) MGI PMID:11668593 NCBI chr17:34,257,462...34,285,659
Ensembl chr17:34,258,411...34,285,659 		JBrowse link
G Col1a1 collagen, type I, alpha 1 acts_upstream_of_or_within IGI (PMID:17440987) MGI PMID:17440987 NCBI chr11:94,827,050...94,843,868
Ensembl chr11:94,827,050...94,843,868 		JBrowse link
G Col2a1 collagen, type II, alpha 1 acts_upstream_of_or_within IMP (PMID:7276808), (PMID:8192242)
(PMID:7590256), (PMID:9915573)		 MGI PMID:7276808 PMID:7590256 PMID:8192242 PMID:9915573 NCBI chr15:97,873,483...97,902,525
Ensembl chr15:97,873,483...97,902,576 		JBrowse link
G Csrnp1 cysteine-serine-rich nuclear protein 1 acts_upstream_of_or_within IMP (PMID:17143286) MGI PMID:17143286 NCBI chr 9:119,800,229...119,813,808
Ensembl chr 9:119,800,229...119,813,724 		JBrowse link
G Fgr FGR proto-oncogene, Src family tyrosine kinase acts_upstream_of_or_within IMP (PMID:16964445) MGI PMID:16964445 NCBI chr 4:132,701,406...132,729,204
Ensembl chr 4:132,701,406...132,729,221 		JBrowse link
G Fmn1 formin 1 acts_upstream_of_or_within IMP (PMID:17554679) MGI PMID:17554679 NCBI chr 2:113,158,029...113,547,113
Ensembl chr 2:113,158,081...113,547,112 		JBrowse link
G Hhip Hedgehog-interacting protein involved_in IMP (MGI:1333378|PMID:10050855) BHF-UCL PMID:10050855 MGI:1333378 NCBI chr 8:80,692,480...80,784,637
Ensembl chr 8:80,692,480...80,784,635 		JBrowse link
G Hoxb2 homeobox B2 acts_upstream_of_or_within IGI
IMP		 (PMID:9012503) MGI PMID:9012503 NCBI chr11:96,242,458...96,244,846
Ensembl chr11:96,241,351...96,244,838 		JBrowse link
G Hoxb4 homeobox B4 acts_upstream_of_or_within IMP
IGI		 (PMID:9012503) MGI PMID:9012503 NCBI chr11:96,209,093...96,212,464
Ensembl chr11:96,209,093...96,212,464 		JBrowse link
G Hoxb8 homeobox B8 acts_upstream_of_or_within IGI
IMP		 (PMID:11311170) MGI PMID:11311170 NCBI chr11:96,170,227...96,176,151
Ensembl chr11:96,172,731...96,176,141 		JBrowse link
G Hoxc8 homeobox C8 acts_upstream_of_or_within IMP
IGI		 (PMID:11311170) MGI PMID:11311170 NCBI chr15:102,898,971...102,902,707
Ensembl chr15:102,899,039...102,902,543 		JBrowse link
G Hoxd8 homeobox D8 acts_upstream_of_or_within IMP
IGI		 (PMID:11311170) MGI PMID:11311170 NCBI chr 2:74,534,973...74,538,277
Ensembl chr 2:74,534,959...74,538,277 		JBrowse link
G Hyal2 hyaluronoglucosaminidase 2 acts_upstream_of_or_within IMP (PMID:18772348) MGI PMID:18772348 NCBI chr 9:107,445,096...107,449,975
Ensembl chr 9:107,445,144...107,449,978 		JBrowse link
G Idua iduronidase, alpha-L acts_upstream_of_or_within IMP (PMID:9097952) MGI PMID:9097952 NCBI chr 5:108,808,197...108,833,312
Ensembl chr 5:108,808,197...108,832,423 		JBrowse link
G Lama5 laminin, alpha 5 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:179,818,166...179,867,652
Ensembl chr 2:179,818,166...179,867,652 		JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within IMP (PMID:15469977) MGI PMID:15469977 NCBI chr 6:134,423,439...134,543,876
Ensembl chr 6:134,423,439...134,543,928 		JBrowse link
G Mmp2 matrix metallopeptidase 2 acts_upstream_of_or_within IGI (PMID:17440987) MGI PMID:17440987 NCBI chr 8:93,553,920...93,580,049
Ensembl chr 8:93,553,919...93,580,048 		JBrowse link
G Myc myelocytomatosis oncogene acts_upstream_of_or_within IMP (PMID:17523175) MGI PMID:17523175 NCBI chr15:61,857,190...61,862,210
Ensembl chr15:61,857,240...61,862,223 		JBrowse link
G Nkx3-2 NK3 homeobox 2 acts_upstream_of_or_within IMP (PMID:10572046) MGI PMID:10572046 NCBI chr 5:41,918,826...41,921,563
Ensembl chr 5:41,918,826...41,921,844 		JBrowse link
G Nle1 notchless homolog 1 acts_upstream_of_or_within IMP (PMID:24824078) MGI PMID:24824078 NCBI chr11:82,791,594...82,799,272
Ensembl chr11:82,791,594...82,799,237 		JBrowse link
G P2rx7 purinergic receptor P2X, ligand-gated ion channel, 7 acts_upstream_of_or_within IMP (PMID:18519738) MGI PMID:18519738 NCBI chr 5:122,781,990...122,830,399
Ensembl chr 5:122,781,974...122,829,495 		JBrowse link
G Pdgfra platelet derived growth factor receptor, alpha polypeptide acts_upstream_of_or_within IMP (PMID:17143286) MGI PMID:17143286 NCBI chr 5:75,311,988...75,358,867
Ensembl chr 5:75,312,953...75,358,876 		JBrowse link
G Pdgfrb platelet derived growth factor receptor, beta polypeptide acts_upstream_of_or_within IMP (PMID:17143286) MGI PMID:17143286 NCBI chr18:61,178,194...61,218,139
Ensembl chr18:61,178,222...61,218,133 		JBrowse link
G Plekha1 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 acts_upstream_of_or_within IMP (PMID:17143286) MGI PMID:17143286 NCBI chr 7:130,462,281...130,515,224
Ensembl chr 7:130,467,486...130,515,042 		JBrowse link
G Prkra protein kinase, interferon inducible double stranded RNA dependent activator acts_upstream_of_or_within IMP (PMID:16571658) MGI PMID:16571658 NCBI chr 2:76,436,385...76,478,614
Ensembl chr 2:76,460,242...76,478,359 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within IMP (PMID:9160754) MGI PMID:9160754 NCBI chr12:83,734,926...83,781,869
Ensembl chr12:83,734,926...83,781,973 		JBrowse link
G Rab33b RAB33B, member RAS oncogene family involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 3:51,391,387...51,403,649
Ensembl chr 3:51,391,341...51,403,653 		JBrowse link
G Recql4 RecQ protein-like 4 acts_upstream_of_or_within IMP (PMID:15703196) MGI PMID:15703196 NCBI chr15:76,587,753...76,594,820
Ensembl chr15:76,587,753...76,594,748 		JBrowse link
G Rflna refilin A involved_in
acts_upstream_of_or_within		 IBA
IGI		 (PMID:24436304) GO_Central
MGI		 PMID:24436304 GO_REF:0000033 NCBI chr 5:125,080,512...125,089,611
Ensembl chr 5:125,080,285...125,089,611 		JBrowse link
G Rflnb refilin B acts_upstream_of_or_within
involved_in		 IGI
IBA		 (PMID:24436304) MGI
GO_Central		 PMID:24436304 GO_REF:0000033 NCBI chr11:75,910,020...75,918,608
Ensembl chr11:75,910,020...75,918,608 		JBrowse link
G Runx2 runt related transcription factor 2 acts_upstream_of_or_within IMP (PMID:15030764) MGI PMID:15030764 NCBI chr17:44,806,873...45,125,518
Ensembl chr17:44,806,874...45,125,684 		JBrowse link
G Ryk receptor-like tyrosine kinase acts_upstream_of_or_within IMP (PMID:10932185) MGI PMID:10932185 NCBI chr 9:102,712,119...102,785,506
Ensembl chr 9:102,712,116...102,785,504 		JBrowse link
G Schip1 schwannomin interacting protein 1 acts_upstream_of_or_within IMP (PMID:17143286) MGI PMID:17143286 NCBI chr 3:67,972,135...68,533,815
Ensembl chr 3:67,972,135...68,533,814 		JBrowse link
G Sgpl1 sphingosine phosphate lyase 1 acts_upstream_of_or_within IMP (PMID:17143286) MGI PMID:17143286 NCBI chr10:60,934,421...60,983,463
Ensembl chr10:60,934,421...60,983,482 		JBrowse link
G Sh3pxd2b SH3 and PX domains 2B involved_in IMP (MGI:5800302|PMID:27711054) UniProt PMID:27711054 MGI:5800302 NCBI chr11:32,297,777...32,378,189
Ensembl chr11:32,297,820...32,378,173 		JBrowse link
G Sik3 SIK family kinase 3 acts_upstream_of_or_within IMP (PMID:22318228) MGI PMID:22318228 NCBI chr 9:45,924,099...46,135,492
Ensembl chr 9:45,924,118...46,135,492 		JBrowse link
G Six1 sine oculis-related homeobox 1 acts_upstream_of_or_within IMP (PMID:12874121) MGI PMID:12874121 NCBI chr12:73,088,601...73,093,486
Ensembl chr12:73,086,789...73,100,661 		JBrowse link
G Spef2 sperm flagellar 2 acts_upstream_of_or_within IMP (PMID:21715716) MGI PMID:21715716 NCBI chr15:9,578,279...9,748,954
Ensembl chr15:9,578,279...9,748,954 		JBrowse link
G Tbx4 T-box 4 involved_in ISS
ISO		 (MGI:3696504|PMID:10945475) UniProt
MGI		 PMID:10945475 GO_REF:0000119 MGI:3696504 MGI:4834177 NCBI chr11:85,777,193...85,806,923
Ensembl chr11:85,777,248...85,806,923 		JBrowse link
G Tcf15 transcription factor 15 acts_upstream_of_or_within IMP (PMID:8955271) MGI PMID:8955271 NCBI chr 2:151,984,973...151,991,017
Ensembl chr 2:151,985,481...151,991,017 		JBrowse link
G Tfap2a transcription factor AP-2, alpha acts_upstream_of_or_within IMP (PMID:8622765) MGI PMID:8622765 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852 		JBrowse link
G Tgfbr1 transforming growth factor, beta receptor I acts_upstream_of_or_within IGI (PMID:16845371) MGI PMID:16845371 NCBI chr 4:47,353,258...47,414,926
Ensembl chr 4:47,353,222...47,414,931 		JBrowse link
G Tiparp TCDD-inducible poly(ADP-ribose) polymerase acts_upstream_of_or_within IMP (PMID:17143286) MGI PMID:17143286 NCBI chr 3:65,435,868...65,462,939
Ensembl chr 3:65,435,831...65,462,939 		JBrowse link
G Wdr48 WD repeat domain 48 acts_upstream_of_or_within IMP (PMID:24001775) MGI PMID:24001775 NCBI chr 9:119,723,961...119,755,652
Ensembl chr 9:119,723,944...119,755,653 		JBrowse link
G Wnt7a wingless-type MMTV integration site family, member 7A acts_upstream_of_or_within IMP MGI MGI:48652 NCBI chr 6:91,340,963...91,388,335
Ensembl chr 6:91,340,963...91,388,345 		JBrowse link
G Wwox WW domain-containing oxidoreductase acts_upstream_of_or_within IMP (PMID:18487609) MGI PMID:18487609 NCBI chr 8:115,166,377...116,079,451
Ensembl chr 8:115,166,395...116,079,447 		JBrowse link
G Zfand5 zinc finger, AN1-type domain 5 acts_upstream_of_or_within IMP (PMID:17143286) MGI PMID:17143286 NCBI chr19:21,249,150...21,264,204
Ensembl chr19:21,249,642...21,264,204 		JBrowse link
G Zfp640 zinc finger protein 640 acts_upstream_of_or_within IMP (PMID:17143286) MGI PMID:17143286 NCBI chr13:66,817,010...66,828,867
Ensembl chr13:66,817,992...66,821,393 		JBrowse link
G Zfp950 zinc finger protein 950 acts_upstream_of_or_within IMP (PMID:17143286) MGI PMID:17143286 NCBI chr19:61,042,692...61,129,297
Ensembl chr19:61,042,278...61,129,278 		JBrowse link
bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acp5 acid phosphatase 5, tartrate resistant acts_upstream_of_or_within IMP (PMID:8898228) MGI PMID:8898228 NCBI chr 9:22,038,023...22,047,042
Ensembl chr 9:22,038,023...22,047,007 		JBrowse link
G Actn3 actinin alpha 3 involved_in IMP (MGI:5291888|PMID:21784188) UniProt PMID:21784188 MGI:5291888 NCBI chr19:4,911,244...4,927,937
Ensembl chr19:4,911,244...4,927,937 		JBrowse link
G Atg9a autophagy related 9A involved_in IMP (MGI:5906103|PMID:27811852) UniProt PMID:27811852 MGI:5906103 NCBI chr 1:75,157,509...75,168,654
Ensembl chr 1:75,157,504...75,168,840 		JBrowse link
G Cdx1 caudal type homeobox 1 acts_upstream_of_or_within IMP
IGI		 (PMID:11784046) MGI PMID:11784046 NCBI chr18:61,151,934...61,169,292
Ensembl chr18:61,151,934...61,169,271 		JBrowse link
G Chsy1 chondroitin sulfate synthase 1 acts_upstream_of_or_within IMP (PMID:22280990) MGI PMID:22280990 NCBI chr 7:65,759,240...65,823,546
Ensembl chr 7:65,759,263...65,823,546 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within IMP (PMID:20549734) MGI PMID:20549734 NCBI chr10:17,598,452...17,601,422
Ensembl chr10:17,598,966...17,601,422 		JBrowse link
G Col9a1 collagen, type IX, alpha 1 acts_upstream_of_or_within IGI (PMID:18191556) MGI PMID:18191556 NCBI chr 1:24,216,670...24,291,819
Ensembl chr 1:24,216,691...24,291,765 		JBrowse link
G Comp cartilage oligomeric matrix protein acts_upstream_of_or_within IGI (PMID:18191556) MGI PMID:18191556 NCBI chr 8:70,826,186...70,834,721
Ensembl chr 8:70,826,208...70,834,716 		JBrowse link
G Cst5 cystatin D involved_in IMP (PMID:16680148) MGI PMID:16680148 NCBI chr 2:149,247,242...149,252,217
Ensembl chr 2:149,246,977...149,252,213 		JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 6:84,548,396...84,570,890
Ensembl chr 6:84,548,396...84,570,890 		JBrowse link
G Dhrs3 dehydrogenase/reductase 3 acts_upstream_of_or_within IMP (PMID:24005908) MGI PMID:24005908 NCBI chr 4:144,618,712...144,654,214
Ensembl chr 4:144,619,397...144,654,779 		JBrowse link
G Dlx5 distal-less homeobox 5 acts_upstream_of_or_within IMP (PMID:16330189) MGI PMID:16330189 NCBI chr 6:6,877,801...6,882,068
Ensembl chr 6:6,877,805...6,882,085 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within IMP (PMID:20080592), (PMID:20404326) MGI PMID:20080592 PMID:20404326 NCBI chr15:52,931,657...53,209,579
Ensembl chr15:52,927,434...53,209,555 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within IMP (PMID:10518547) MGI PMID:10518547 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 involved_in
acts_upstream_of_or_within		 IMP (MGI:4457789|PMID:20582225)
(PMID:19407216)		 BHF-UCL
MGI		 PMID:19407216 PMID:20582225 MGI:4457789 NCBI chr 5:33,879,068...33,894,412
Ensembl chr 5:33,879,018...33,894,412 		JBrowse link
G Glg1 golgi apparatus protein 1 acts_upstream_of_or_within IMP (PMID:20530870) MGI PMID:20530870 NCBI chr 8:111,879,916...111,985,842
Ensembl chr 8:111,881,053...111,985,848 		JBrowse link
G Has2 hyaluronan synthase 2 acts_upstream_of_or_within IMP (PMID:21246657) MGI PMID:21246657 NCBI chr15:56,529,023...56,557,942
Ensembl chr15:56,529,023...56,557,935 		JBrowse link
G Hottip Hoxa distal transcript antisense RNA acts_upstream_of_or_within
involved_in		 IMP (PMID:25909911) MGI PMID:25909911 NCBI chr 6:52,239,760...52,244,588
Ensembl chr 6:52,239,760...52,244,588 		JBrowse link
G Ifitm5 interferon induced transmembrane protein 5 involved_in IMP
IBA
ISO		 (MGI:5607401|PMID:20838829) UniProt
GO_Central
MGI		 PMID:20838829 GO_REF:0000033 GO_REF:0000119 MGI:4834177 MGI:5607401 NCBI chr 7:140,528,871...140,530,156
Ensembl chr 7:140,528,871...140,530,204 		JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within IMP (PMID:21227999) MGI PMID:21227999 NCBI chr 3:68,799,832...68,911,939
Ensembl chr 3:68,799,832...68,911,892 		JBrowse link
G Lrp5 low density lipoprotein receptor-related protein 5 involved_in ISO (PMID:19673927), (PMID:20146170), (PMID:20630166) BHF-UCL PMID:19673927 PMID:20146170 PMID:20630166 NCBI chr19:3,634,825...3,736,574
Ensembl chr19:3,634,828...3,736,564 		JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within IMP MGI MGI:61254 NCBI chr 6:134,423,439...134,543,876
Ensembl chr 6:134,423,439...134,543,928 		JBrowse link
G Ltbp3 latent transforming growth factor beta binding protein 3 acts_upstream_of_or_within IMP (PMID:11790802), (PMID:20530870) MGI PMID:11790802 PMID:20530870 NCBI chr19:5,790,928...5,808,564
Ensembl chr19:5,790,932...5,808,560 		JBrowse link
G Ltf lactotransferrin involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 9:110,848,360...110,871,834
Ensembl chr 9:110,848,339...110,871,835 		JBrowse link
G Mmp13 matrix metallopeptidase 13 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 9:7,272,514...7,283,333
Ensembl chr 9:7,272,514...7,283,331 		JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within IMP
IGI		 (PMID:12489152), (PMID:16330189)
(PMID:17693062)		 MGI PMID:12489152 PMID:16330189 PMID:17693062 NCBI chr 5:37,977,835...37,981,929
Ensembl chr 5:37,977,829...37,981,927 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within IGI (PMID:17693062) MGI PMID:17693062 NCBI chr13:53,620,917...53,626,816
Ensembl chr13:53,620,920...53,627,110 		JBrowse link
G Osr2 odd-skipped related 2 involved_in IMP (MGI:3818159|PMID:17547533) UniProt PMID:17547533 MGI:3818159 NCBI chr15:35,296,244...35,303,451
Ensembl chr15:35,296,244...35,303,451 		JBrowse link
G Pappa2 pappalysin 2 acts_upstream_of_or_within IMP (PMID:23457539) MGI PMID:23457539 NCBI chr 1:158,539,297...158,788,019
Ensembl chr 1:158,539,297...158,808,060 		JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within IMP (PMID:7607069) MGI PMID:7607069 NCBI chr 2:147,203,850...147,216,972
Ensembl chr 2:147,203,845...147,235,215 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within IMP
IGI		 (PMID:11784046), (PMID:8388780) MGI PMID:8388780 PMID:11784046 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
G Ripply1 ripply transcriptional repressor 1 acts_upstream_of_or_within IGI
IMP		 (PMID:20346937) MGI PMID:20346937 NCBI chr  X:138,680,430...138,683,102
Ensembl chr  X:138,680,298...138,683,102 		JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within IGI (PMID:20346937) MGI PMID:20346937 NCBI chr 9:86,897,590...86,902,494
Ensembl chr 9:86,897,590...86,901,970 		JBrowse link
G Sfrp4 secreted frizzled-related protein 4 involved_in IMP
ISO		 (MGI:5790095|PMID:27355534) UniProt
MGI		 PMID:27355534 GO_REF:0000119 MGI:4834177 MGI:5790095 NCBI chr13:19,807,345...19,816,995
Ensembl chr13:19,807,274...19,817,164 		JBrowse link
G Ski ski sarcoma viral oncogene homolog (avian) acts_upstream_of_or_within IMP (PMID:9284043) MGI PMID:9284043 NCBI chr 4:155,238,532...155,307,536
Ensembl chr 4:155,238,532...155,307,049 		JBrowse link
G Sp5 trans-acting transcription factor 5 acts_upstream_of_or_within IGI (PMID:11071760) MGI PMID:11071760 NCBI chr 2:70,305,267...70,308,070
Ensembl chr 2:70,305,267...70,308,073 		JBrowse link
G T brachyury, T-box transcription factor T acts_upstream_of_or_within IGI (PMID:11071760) MGI PMID:11071760 NCBI chr17:8,653,255...8,661,328
Ensembl chr17:8,653,255...8,661,328 		JBrowse link
G Tfap2a transcription factor AP-2, alpha involved_in IMP (MGI:80519|PMID:8622766) UniProt PMID:8622766 MGI:80519 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852 		JBrowse link
bone trabecula formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col1a1 collagen, type I, alpha 1 acts_upstream_of_or_within IGI (PMID:17440987) MGI PMID:17440987 NCBI chr11:94,827,050...94,843,868
Ensembl chr11:94,827,050...94,843,868 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in IMP (PMID:22359666) MGI PMID:22359666 NCBI chr10:24,513,812...24,588,057
Ensembl chr10:24,513,812...24,588,057 		JBrowse link
G Fbn2 fibrillin 2 involved_in IMP (MGI:4836762|PMID:20855508) BHF-UCL PMID:20855508 MGI:4836762 NCBI chr18:58,141,689...58,343,200
Ensembl chr18:58,141,695...58,343,559 		JBrowse link
G Mmp2 matrix metallopeptidase 2 acts_upstream_of_or_within IGI (PMID:17440987) MGI PMID:17440987 NCBI chr 8:93,553,920...93,580,049
Ensembl chr 8:93,553,919...93,580,048 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within IMP (PMID:10742104) MGI PMID:10742104 NCBI chr13:53,620,917...53,626,816
Ensembl chr13:53,620,920...53,627,110 		JBrowse link
G Ppargc1b peroxisome proliferative activated receptor, gamma, coactivator 1 beta involved_in IMP (MGI:3838421|PMID:19252502) DFLAT PMID:19252502 MGI:3838421 NCBI chr18:61,424,516...61,533,846
Ensembl chr18:61,431,207...61,533,502 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within IMP (PMID:14976225) MGI PMID:14976225 NCBI chr 8:23,901,401...23,939,648
Ensembl chr 8:23,901,518...23,939,648 		JBrowse link
G Thbs3 thrombospondin 3 acts_upstream_of_or_within IMP (PMID:15964815) MGI PMID:15964815 NCBI chr 3:89,122,470...89,134,148
Ensembl chr 3:89,122,487...89,134,144 		JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within IMP (PMID:22886301) MGI PMID:22886301 NCBI chr17:46,327,919...46,343,303
Ensembl chr17:46,327,919...46,343,295 		JBrowse link
G Wnt10b wingless-type MMTV integration site family, member 10B acts_upstream_of_or_within IMP (PMID:15728361) MGI PMID:15728361 NCBI chr15:98,668,593...98,676,093
Ensembl chr15:98,668,593...98,676,031 		JBrowse link
cartilage condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan acts_upstream_of_or_within IMP (PMID:3070812) MGI PMID:3070812 NCBI chr 7:78,702,974...78,764,847
Ensembl chr 7:78,703,231...78,764,847 		JBrowse link
G Barx2 BarH-like homeobox 2 acts_upstream_of_or_within IDA
IMP		 (PMID:15800003) MGI PMID:15800003 NCBI chr 9:31,757,340...31,824,581
Ensembl chr 9:31,757,340...31,824,758 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor, type 1B acts_upstream_of_or_within IMP (PMID:10631181) MGI PMID:10631181 NCBI chr 3:141,540,230...141,875,335
Ensembl chr 3:141,542,897...141,875,186 		JBrowse link
G Ccn2 cellular communication network factor 2 acts_upstream_of_or_within IDA (PMID:15305294) MGI PMID:15305294 NCBI chr10:24,471,340...24,474,581
Ensembl chr10:24,471,340...24,474,581 		JBrowse link
G Chad chondroadherin ISO RGD PMID:9461555 RGD:69806 NCBI chr11:94,455,873...94,459,953
Ensembl chr11:94,455,873...94,459,953 		JBrowse link
G Col11a1 collagen, type XI, alpha 1 acts_upstream_of_or_within IMP (PMID:3070812) MGI PMID:3070812 NCBI chr 3:113,823,933...114,014,405
Ensembl chr 3:113,824,189...114,014,367 		JBrowse link
G Col2a1 collagen, type II, alpha 1 acts_upstream_of_or_within IMP (PMID:3070812) MGI PMID:3070812 NCBI chr15:97,873,483...97,902,525
Ensembl chr15:97,873,483...97,902,576 		JBrowse link
G Fgf4 fibroblast growth factor 4 acts_upstream_of_or_within IGI (PMID:8565825) MGI PMID:8565825 NCBI chr 7:144,415,123...144,418,982
Ensembl chr 7:144,401,104...144,418,980 		JBrowse link
G Fgf6 fibroblast growth factor 6 acts_upstream_of_or_within IGI (PMID:8565825) MGI PMID:8565825 NCBI chr 6:126,992,505...127,001,681
Ensembl chr 6:126,992,549...127,005,150 		JBrowse link
G Mapk14 mitogen-activated protein kinase 14 involved_in IMP (MGI:5487758|PMID:17202865) AgBase PMID:17202865 MGI:5487758 NCBI chr17:28,910,316...28,967,379
Ensembl chr17:28,910,303...28,967,380 		JBrowse link
G Mycn v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived acts_upstream_of_or_within IMP (PMID:17360777) MGI PMID:17360777 NCBI chr12:12,986,094...12,991,837
Ensembl chr12:12,986,094...12,991,915 		JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within IMP (PMID:8565825) MGI PMID:8565825 NCBI chr10:107,318,769...107,322,787
Ensembl chr10:107,318,769...107,321,995 		JBrowse link
G Otor otoraplin acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:10998416) MGI
GO_Central		 PMID:10998416 GO_REF:0000033 NCBI chr 2:142,920,313...142,923,633
Ensembl chr 2:142,920,393...142,923,633 		JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting acts_upstream_of_or_within IMP (PMID:11593033) MGI PMID:11593033 NCBI chr17:24,767,657...24,815,457
Ensembl chr17:24,768,808...24,815,482 		JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 acts_upstream_of_or_within IMP (PMID:14745966) MGI PMID:14745966 NCBI chr13:53,263,353...53,440,160
Ensembl chr13:53,263,348...53,440,160 		JBrowse link
G Sox5 SRY (sex determining region Y)-box 5 involved_in IMP (MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235) UniProt PMID:11702786 PMID:14993235 MGI:2446758 MGI:3037234 NCBI chr 6:143,774,151...144,728,008
Ensembl chr 6:143,774,151...144,727,703 		JBrowse link
G Sox6 SRY (sex determining region Y)-box 6 involved_in IMP (MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235) UniProt PMID:11702786 PMID:14993235 MGI:2446758 MGI:3037234 NCBI chr 7:115,070,107...115,639,186
Ensembl chr 7:115,070,107...115,638,031 		JBrowse link
G Sox9 SRY (sex determining region Y)-box 9 acts_upstream_of_or_within IMP (PMID:10319868)
(PMID:12414734)		 MGI PMID:10319868 PMID:12414734 NCBI chr11:112,673,036...112,678,583
Ensembl chr11:112,673,050...112,678,586 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 acts_upstream_of_or_within IGI (PMID:8565825) MGI PMID:8565825 NCBI chr 1:186,354,984...186,441,504
Ensembl chr 1:186,354,989...186,438,186 		JBrowse link
G Thra thyroid hormone receptor alpha acts_upstream_of_or_within IMP (PMID:9250685) MGI PMID:9250685 NCBI chr11:98,631,539...98,659,832
Ensembl chr11:98,631,464...98,659,832 		JBrowse link
G Uncx UNC homeobox acts_upstream_of_or_within IMP (PMID:10804169)
(PMID:10804168)		 MGI PMID:10804168 PMID:10804169 NCBI chr 5:139,529,620...139,533,934
Ensembl chr 5:139,529,249...139,533,934 		JBrowse link
G Wnt7a wingless-type MMTV integration site family, member 7A involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 6:91,340,963...91,388,335
Ensembl chr 6:91,340,963...91,388,345 		JBrowse link
cartilage development involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta-synthase acts_upstream_of_or_within IMP (PMID:15622513) MGI PMID:15622513 NCBI chr17:31,831,602...31,856,170
Ensembl chr17:31,827,868...31,856,212 		JBrowse link
G Col1a1 collagen, type I, alpha 1 acts_upstream_of_or_within IMP (PMID:18248096) MGI PMID:18248096 NCBI chr11:94,827,050...94,843,868
Ensembl chr11:94,827,050...94,843,868 		JBrowse link
G Col2a1 collagen, type II, alpha 1 acts_upstream_of_or_within ISO
IMP		 mandibular condylar cartilage
(PMID:8989518)
(PMID:9022054)
(PMID:11680679)		 RGD
MGI		 PMID:8989518 PMID:9022054 PMID:11680679 PMID:12924823 RGD:8661659 NCBI chr15:97,873,483...97,902,525
Ensembl chr15:97,873,483...97,902,576 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within IMP (PMID:21185280), (PMID:23958822) MGI PMID:21185280 PMID:23958822 NCBI chr15:52,931,657...53,209,579
Ensembl chr15:52,927,434...53,209,555 		JBrowse link
G Ghr growth hormone receptor ISO RGD PMID:15749813 RGD:2307373 NCBI chr15:3,347,237...3,612,834
Ensembl chr15:3,347,242...3,612,974 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within IGI (PMID:14668414) MGI PMID:14668414 NCBI chr 6:52,219,086...52,222,784
Ensembl chr 6:52,219,086...52,222,790 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within IGI (PMID:14668414) MGI PMID:14668414 NCBI chr 2:74,509,902...74,517,360
Ensembl chr 2:74,509,901...74,517,360 		JBrowse link
G Hspg2 perlecan (heparan sulfate proteoglycan 2) acts_upstream_of_or_within IMP (PMID:10545953) MGI PMID:10545953 NCBI chr 4:137,196,062...137,297,941
Ensembl chr 4:137,196,080...137,297,941 		JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within IMP (PMID:16537395) MGI PMID:16537395 NCBI chr 3:66,879,056...66,889,104
Ensembl chr 3:66,879,060...66,889,104 		JBrowse link
G Sik3 SIK family kinase 3 acts_upstream_of_or_within IMP (PMID:22318228) MGI PMID:22318228 NCBI chr 9:45,924,099...46,135,492
Ensembl chr 9:45,924,118...46,135,492 		JBrowse link
G Trpv4 transient receptor potential cation channel, subfamily V, member 4 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 5:114,760,213...114,796,497
Ensembl chr 5:114,760,213...114,796,482 		JBrowse link
chondrocyte development involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Serpinh1 serine (or cysteine) peptidase inhibitor, clade H, member 1 acts_upstream_of_or_within IMP (PMID:22492985) MGI PMID:22492985 NCBI chr 7:98,994,583...99,002,321
Ensembl chr 7:98,994,583...99,002,446 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3, neutral acts_upstream_of_or_within IMP (PMID:21788370) MGI PMID:21788370 NCBI chr 8:106,979,180...107,064,597
Ensembl chr 8:106,979,180...107,064,620 		JBrowse link
chondrocyte differentiation involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin2 axin 2 acts_upstream_of_or_within IMP (PMID:19623616) MGI PMID:19623616 NCBI chr11:108,808,687...108,841,609
Ensembl chr11:108,811,175...108,841,609 		JBrowse link
G Ihh Indian hedgehog acts_upstream_of_or_within IMP (PMID:25639508) MGI PMID:25639508 NCBI chr 1:74,984,474...74,990,831
Ensembl chr 1:74,984,474...74,990,831 		JBrowse link
G Scube2 signal peptide, CUB domain, EGF-like 2 acts_upstream_of_or_within IMP (PMID:25639508) MGI PMID:25639508 NCBI chr 7:109,397,897...109,464,886
Ensembl chr 7:109,397,883...109,464,886 		JBrowse link
G Sox9 SRY (sex determining region Y)-box 9 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:112,673,036...112,678,583
Ensembl chr11:112,673,050...112,678,586 		JBrowse link
G Trip11 thyroid hormone receptor interactor 11 acts_upstream_of_or_within IMP (PMID:20089971) MGI PMID:20089971 NCBI chr12:101,800,304...101,879,463
Ensembl chr12:101,800,302...101,879,526 		JBrowse link
coronal suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within IMP (PMID:19389359) MGI PMID:19389359 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
cranial suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within IDA (PMID:9477322) MGI PMID:9477322 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Fgf4 fibroblast growth factor 4 acts_upstream_of_or_within IDA (PMID:9477322) MGI PMID:9477322 NCBI chr 7:144,415,123...144,418,982
Ensembl chr 7:144,401,104...144,418,980 		JBrowse link
G Igf1 insulin-like growth factor 1 ISO RGD PMID:10597685 RGD:12910129 NCBI chr10:87,694,127...87,772,909
Ensembl chr10:87,694,127...87,772,904 		JBrowse link
G Insig1 insulin induced gene 1 acts_upstream_of_or_within IGI (PMID:16955138) MGI PMID:16955138 NCBI chr 5:28,276,410...28,283,660
Ensembl chr 5:28,276,361...28,283,660 		JBrowse link
G Insig2 insulin induced gene 2 acts_upstream_of_or_within IGI (PMID:16955138) MGI PMID:16955138 NCBI chr 1:121,232,082...121,260,391
Ensembl chr 1:121,232,082...121,260,318 		JBrowse link
G Twist1 twist basic helix-loop-helix transcription factor 1 involved_in
acts_upstream_of_or_within		 IMP (MGI:3623529|PMID:16502419)
(PMID:12221714)
(PMID:15030764)		 UniProt
MGI		 PMID:12221714 PMID:15030764 PMID:16502419 MGI:3623529 NCBI chr12:34,007,670...34,009,830
Ensembl chr12:34,007,670...34,009,828 		JBrowse link
craniofacial suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxn3 forkhead box N3 acts_upstream_of_or_within IMP (PMID:20691664) MGI PMID:20691664 NCBI chr12:99,156,340...99,529,926
Ensembl chr12:99,156,337...99,529,841 		JBrowse link
G Frem1 Fras1 related extracellular matrix protein 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 4:82,816,157...82,970,743
Ensembl chr 4:82,816,164...82,970,576 		JBrowse link
G Megf8 multiple EGF-like-domains 8 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 7:25,016,589...25,065,342
Ensembl chr 7:25,016,589...25,065,342 		JBrowse link
G Mmp14 matrix metallopeptidase 14 (membrane-inserted) acts_upstream_of_or_within IGI (PMID:18022611) MGI PMID:18022611 NCBI chr14:54,669,055...54,679,913
Ensembl chr14:54,669,069...54,682,821 		JBrowse link
G Mmp16 matrix metallopeptidase 16 acts_upstream_of_or_within IGI (PMID:18022611) MGI PMID:18022611 NCBI chr 4:17,853,072...18,117,479
Ensembl chr 4:17,852,893...18,119,145 		JBrowse link
G Neurog1 neurogenin 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:56,398,291...56,399,993
Ensembl chr13:56,398,291...56,399,976 		JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:33,758,991...33,781,642
Ensembl chr 1:33,758,968...33,781,645 		JBrowse link
G Tifab TRAF-interacting protein with forkhead-associated domain, family member B involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:56,318,917...56,326,816
Ensembl chr13:56,321,517...56,326,698 		JBrowse link
G Tmem107 transmembrane protein 107 acts_upstream_of_or_within IMP (PMID:28954202) MGI PMID:28954202 NCBI chr11:68,961,635...68,964,119
Ensembl chr11:68,961,632...68,964,119 		JBrowse link
embryonic cranial skeleton morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 2610005L07Rik RIKEN cDNA 2610005L07 gene acts_upstream_of_or_within IMP (PMID:17143286) MGI PMID:17143286 NCBI chr 8:20,016,466...20,055,498
Ensembl chr 8:20,016,466...20,055,498
Ensembl chr 8:20,016,466...20,055,498 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within IMP (PMID:9268572) MGI PMID:9268572 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Dlx1as distal-less homeobox 1, antisense acts_upstream_of_or_within IMP (PMID:23415800) MGI PMID:23415800 NCBI chr 2:71,360,982...71,368,235
Ensembl chr 2:71,346,798...71,368,252 		JBrowse link
G Dlx2 distal-less homeobox 2 acts_upstream_of_or_within IMP (PMID:7590232) MGI PMID:7590232 NCBI chr 2:71,373,752...71,377,095
Ensembl chr 2:71,373,752...71,377,098 		JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:119,179,189...119,190,869
Ensembl chr11:119,179,189...119,190,915 		JBrowse link
G Eif4a3l1 eukaryotic translation initiation factor 4A3 like 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 6:136,304,537...136,306,981
Ensembl chr 6:136,304,537...136,306,981 		JBrowse link
G Eif4a3l2 eukaryotic translation initiation factor 4A3 like 2 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 6:116,527,132...116,529,563
Ensembl chr 6:116,528,102...116,529,463 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within IMP (PMID:9106663) MGI PMID:9106663 NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634 		JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within IGI
IMP		 (PMID:17525797) MGI PMID:17525797 NCBI chr13:60,322,219...60,325,179
Ensembl chr13:60,322,219...60,325,179 		JBrowse link
G Gnas GNAS complex locus acts_upstream_of_or_within IMP (PMID:15797856) MGI PMID:15797856 NCBI chr 2:174,126,113...174,188,537
Ensembl chr 2:174,126,113...174,188,537 		JBrowse link
G Grhl2 grainyhead like transcription factor 2 acts_upstream_of_or_within IMP (PMID:21377456) MGI PMID:21377456 NCBI chr15:37,233,065...37,363,813
Ensembl chr15:37,233,280...37,363,813 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within IMP (PMID:23469164) MGI PMID:23469164 NCBI chr17:25,235,056...25,318,461
Ensembl chr17:25,235,059...25,318,469 		JBrowse link
G Irx5 Iroquois homeobox 5 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 8:93,084,424...93,088,084
Ensembl chr 8:93,084,253...93,102,914 		JBrowse link
G Mmp14 matrix metallopeptidase 14 (membrane-inserted) acts_upstream_of_or_within IGI (PMID:18022611) MGI PMID:18022611 NCBI chr14:54,669,055...54,679,913
Ensembl chr14:54,669,069...54,682,821 		JBrowse link
G Mmp16 matrix metallopeptidase 16 acts_upstream_of_or_within IGI (PMID:18022611) MGI PMID:18022611 NCBI chr 4:17,853,072...18,117,479
Ensembl chr 4:17,852,893...18,119,145 		JBrowse link
G Nipbl NIPBL cohesin loading factor acts_upstream_of_or_within IMP (PMID:19763162) MGI PMID:19763162 NCBI chr15:8,319,308...8,494,799
Ensembl chr15:8,320,101...8,473,947 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within IMP (PMID:11311163) MGI PMID:11311163 NCBI chr10:61,253,751...61,261,117
Ensembl chr10:61,253,751...61,261,117 		JBrowse link
G Pax5 paired box 5 acts_upstream_of_or_within IMP (PMID:23349049) MGI PMID:23349049 NCBI chr 4:44,524,748...44,710,694
Ensembl chr 4:44,524,757...44,710,487 		JBrowse link
G Pdgfra platelet derived growth factor receptor, alpha polypeptide involved_in IMP
IBA		 (MGI:894516|PMID:9226440) UniProt
GO_Central		 PMID:9226440 GO_REF:0000033 MGI:894516 NCBI chr 5:75,311,988...75,358,867
Ensembl chr 5:75,312,953...75,358,876 		JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within IMP
IGI		 (PMID:7758948)
(PMID:9729491)		 MGI PMID:7758948 PMID:9729491 NCBI chr 1:163,072,688...163,142,714
Ensembl chr 1:163,072,688...163,141,279 		JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within IGI (PMID:9729491) MGI PMID:9729491 NCBI chr 2:30,735,076...30,771,263
Ensembl chr 2:30,724,984...30,771,263 		JBrowse link
G Runx2 runt related transcription factor 2 acts_upstream_of_or_within IGI (PMID:15030764) MGI PMID:15030764 NCBI chr17:44,806,873...45,125,518
Ensembl chr17:44,806,874...45,125,684 		JBrowse link
G Setd2 SET domain containing 2 acts_upstream_of_or_within IMP (PMID:20133625) MGI PMID:20133625 NCBI chr 9:110,361,368...110,447,703
Ensembl chr 9:110,361,665...110,447,701 		JBrowse link
G Six1 sine oculis-related homeobox 1 acts_upstream_of_or_within IGI (PMID:20515681) MGI PMID:20515681 NCBI chr12:73,088,601...73,093,486
Ensembl chr12:73,086,789...73,100,661 		JBrowse link
G Six2 sine oculis-related homeobox 2 acts_upstream_of_or_within IMP (PMID:20515681) MGI PMID:20515681 NCBI chr17:85,970,276...85,995,682
Ensembl chr17:85,991,705...85,995,702 		JBrowse link
G Six4 sine oculis-related homeobox 4 acts_upstream_of_or_within IGI (PMID:20515681) MGI PMID:20515681 NCBI chr12:73,146,383...73,160,201
Ensembl chr12:73,146,383...73,160,230 		JBrowse link
G Slc39a1 solute carrier family 39 (zinc transporter), member 1 acts_upstream_of_or_within IGI
IMP		 (PMID:16652366) MGI PMID:16652366 NCBI chr 3:90,155,512...90,160,923
Ensembl chr 3:90,155,479...90,160,919 		JBrowse link
G Slc39a3 solute carrier family 39 (zinc transporter), member 3 acts_upstream_of_or_within IGI (PMID:16652366) MGI PMID:16652366 NCBI chr10:80,864,374...80,873,169
Ensembl chr10:80,864,372...80,873,260 		JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within IGI (PMID:15183723) MGI PMID:15183723 NCBI chr18:76,369,898...76,444,819
Ensembl chr18:76,374,651...76,444,034 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within IGI (PMID:15183723) MGI PMID:15183723 NCBI chr 9:63,554,048...63,665,276
Ensembl chr 9:63,554,049...63,665,276 		JBrowse link
G Tbx1 T-box 1 acts_upstream_of_or_within IMP (PMID:15190012) MGI PMID:15190012 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421 		JBrowse link
G Tbx15 T-box 15 acts_upstream_of_or_within IMP (PMID:15728667) MGI PMID:15728667 NCBI chr 3:99,147,671...99,261,576
Ensembl chr 3:99,147,697...99,261,575 		JBrowse link
G Tfap2a transcription factor AP-2, alpha involved_in
acts_upstream_of_or_within		 IMP (MGI:80519|PMID:8622766)
(PMID:8622765)		 UniProt
MGI		 PMID:8622765 PMID:8622766 MGI:80519 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852 		JBrowse link
G Tgfbr1 transforming growth factor, beta receptor I acts_upstream_of_or_within IMP (PMID:16806156) MGI PMID:16806156 NCBI chr 4:47,353,258...47,414,926
Ensembl chr 4:47,353,222...47,414,931 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor II involved_in IMP (MGI:2678274|PMID:12975342) BHF-UCL PMID:12975342 MGI:2678274 NCBI chr 9:115,916,763...116,004,431
Ensembl chr 9:115,913,361...116,004,428 		JBrowse link
G Twist1 twist basic helix-loop-helix transcription factor 1 involved_in
acts_upstream_of_or_within		 IMP
IGI
ISO		 (MGI:1100098|PMID:8988167)
(PMID:15030764)		 BHF-UCL
MGI		 PMID:8988167 PMID:15030764 GO_REF:0000119 MGI:1100098 MGI:4834177 NCBI chr12:34,007,670...34,009,830
Ensembl chr12:34,007,670...34,009,828 		JBrowse link
G Twist2 twist basic helix-loop-helix transcription factor 2 acts_upstream_of_or_within IGI (PMID:15030764) MGI PMID:15030764 NCBI chr 1:91,729,183...91,775,756
Ensembl chr 1:91,729,183...91,775,750 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within IMP (PMID:22228095) MGI PMID:22228095 NCBI chr 5:65,357,039...65,417,758
Ensembl chr 5:65,357,039...65,417,758 		JBrowse link
G Wnt9b wingless-type MMTV integration site family, member 9B acts_upstream_of_or_within IMP (PMID:16998816)
(PMID:16054034)		 MGI PMID:16054034 PMID:16998816 NCBI chr11:103,618,188...103,666,098
Ensembl chr11:103,618,190...103,640,647 		JBrowse link
embryonic neurocranium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within IGI (PMID:27395007) MGI PMID:27395007 NCBI chr19:45,724,930...45,731,380
Ensembl chr19:45,725,237...45,731,354 		JBrowse link
G Fuz fuzzy planar cell polarity protein acts_upstream_of_or_within IMP
IGI		 (PMID:27395007) MGI PMID:27395007 NCBI chr 7:44,545,517...44,552,053
Ensembl chr 7:44,545,503...44,552,055 		JBrowse link
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IMP (PMID:27395007) MGI PMID:27395007 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611 		JBrowse link
G Hoxa1 homeobox A1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 6:52,132,573...52,135,299
Ensembl chr 6:52,132,570...52,135,297 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within IMP (PMID:20589884) MGI PMID:20589884 NCBI chr  X:100,317,697...100,342,540
Ensembl chr  X:100,317,636...100,341,071 		JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like involved_in IMP (MGI:5468075|PMID:23267094) BHF-UCL PMID:23267094 MGI:5468075 NCBI chr10:3,918,282...4,117,081
Ensembl chr10:3,923,118...4,117,081 		JBrowse link
G Ndst1 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 acts_upstream_of_or_within IMP (PMID:16020517) MGI PMID:16020517 NCBI chr18:60,817,566...60,907,465
Ensembl chr18:60,817,566...60,881,722 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISO RGD
MGI		 PMID:11002343 GO_REF:0000096 MGI:4417868 RGD:1579866 NCBI chr 1:186,354,984...186,441,504
Ensembl chr 1:186,354,989...186,438,186 		JBrowse link
G Tgfb3 transforming growth factor, beta 3 involved_in ISO RGD
MGI		 PMID:11002343 GO_REF:0000096 MGI:4417868 RGD:1579866 NCBI chr12:86,103,517...86,125,815
Ensembl chr12:86,103,519...86,125,815 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within IMP (PMID:19286674) MGI PMID:19286674 NCBI chr 6:128,298,103...128,332,833
Ensembl chr 6:128,298,124...128,332,814 		JBrowse link
embryonic skeletal joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 acts_upstream_of_or_within IMP MGI MGI:48782 NCBI chr17:26,350,294...26,414,784
Ensembl chr17:26,357,662...26,414,785 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within IMP
IGI		 (PMID:9664686) MGI PMID:9664686 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within IMP
IGI		 (PMID:9664686) MGI PMID:9664686 NCBI chr 2:172,709,805...172,782,114
Ensembl chr 2:172,709,805...172,782,114 		JBrowse link
G Col2a1 collagen, type II, alpha 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr15:97,873,483...97,902,525
Ensembl chr15:97,873,483...97,902,576 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within IGI (PMID:20978074) MGI PMID:20978074 NCBI chr 6:52,219,086...52,222,784
Ensembl chr 6:52,219,086...52,222,790 		JBrowse link
G Hoxc11 homeobox C11 acts_upstream_of_or_within IGI (PMID:20978074) MGI PMID:20978074 NCBI chr15:102,862,961...102,865,136
Ensembl chr15:102,862,862...102,866,143 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within IGI (PMID:20978074) MGI PMID:20978074 NCBI chr 2:74,509,902...74,517,360
Ensembl chr 2:74,509,901...74,517,360 		JBrowse link
G Hyal1 hyaluronoglucosaminidase 1 acts_upstream_of_or_within IMP (PMID:18772348) MGI PMID:18772348 NCBI chr 9:107,454,149...107,458,898
Ensembl chr 9:107,454,126...107,458,909 		JBrowse link
G Nog noggin involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:89,191,464...89,193,385
Ensembl chr11:89,191,464...89,193,158 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in IGI (MGI:4950000|PMID:21262216) BHF-UCL PMID:21262216 MGI:4950000 NCBI chr12:9,624,442...9,631,500
Ensembl chr12:9,620,116...9,631,500 		JBrowse link
G Osr2 odd-skipped related 2 involved_in IMP (MGI:4950000|PMID:21262216) BHF-UCL PMID:21262216 MGI:4950000 NCBI chr15:35,296,244...35,303,451
Ensembl chr15:35,296,244...35,303,451 		JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within IMP (PMID:18514492) MGI PMID:18514492 NCBI chr 3:66,879,056...66,889,104
Ensembl chr 3:66,879,060...66,889,104 		JBrowse link
embryonic skeletal limb joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 involved_in IGI (MGI:4950000|PMID:21262216) BHF-UCL PMID:21262216 MGI:4950000 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in IGI (MGI:4950000|PMID:21262216) BHF-UCL PMID:21262216 MGI:4950000 NCBI chr12:9,624,442...9,631,500
Ensembl chr12:9,620,116...9,631,500 		JBrowse link
G Osr2 odd-skipped related 2 involved_in IGI (MGI:4950000|PMID:21262216) BHF-UCL PMID:21262216 MGI:4950000 NCBI chr15:35,296,244...35,303,451
Ensembl chr15:35,296,244...35,303,451 		JBrowse link
embryonic skeletal system morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alx1 ALX homeobox 1 acts_upstream_of_or_within
involved_in		 IGI
IBA		 (PMID:15728667), (PMID:9847249) MGI
GO_Central		 PMID:9847249 PMID:15728667 GO_REF:0000033 NCBI chr10:102,834,564...102,865,501
Ensembl chr10:102,834,568...102,866,076 		JBrowse link
G Alx3 aristaless-like homeobox 3 acts_upstream_of_or_within IGI (PMID:11641221), (PMID:15728667) MGI PMID:11641221 PMID:15728667 NCBI chr 3:107,502,347...107,513,191
Ensembl chr 3:107,502,347...107,513,092 		JBrowse link
G Alx4 aristaless-like homeobox 4 acts_upstream_of_or_within IGI
IMP		 (PMID:9847249)
(PMID:15728667)
(PMID:11641221)		 MGI PMID:9847249 PMID:11641221 PMID:15728667 NCBI chr 2:93,472,779...93,511,686
Ensembl chr 2:93,472,729...93,511,684 		JBrowse link
G Asxl2 ASXL transcriptional regulator 2 acts_upstream_of_or_within IMP (PMID:19270745) MGI PMID:19270745 NCBI chr12:3,476,892...3,560,811
Ensembl chr12:3,476,857...3,556,852 		JBrowse link
G Bmi1 Bmi1 polycomb ring finger oncogene acts_upstream_of_or_within IGI (PMID:11290297) MGI PMID:11290297 NCBI chr 2:18,681,953...18,691,440
Ensembl chr 2:18,681,829...18,691,440 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within IMP (PMID:16712836) MGI PMID:16712836 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Chst11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within IMP (PMID:16079159) MGI PMID:16079159 NCBI chr10:82,820,274...83,031,738
Ensembl chr10:82,821,332...83,031,734 		JBrowse link
G Col11a1 collagen, type XI, alpha 1 acts_upstream_of_or_within IMP (PMID:4100752) MGI PMID:4100752 NCBI chr 3:113,823,933...114,014,405
Ensembl chr 3:113,824,189...114,014,367 		JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 acts_upstream_of_or_within IMP (PMID:11238884) MGI PMID:11238884 NCBI chr16:31,482,261...31,692,174
Ensembl chr16:31,482,261...31,693,947 		JBrowse link
G Dscaml1 DS cell adhesion molecule like 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 9:45,338,735...45,665,011
Ensembl chr 9:45,337,926...45,665,010 		JBrowse link
G Dync2i1 dynein 2 intermediate chain 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr12:116,169,881...116,226,665
Ensembl chr12:116,169,882...116,226,642 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within IMP (PMID:10471511) MGI PMID:10471511 NCBI chr 1:14,239,177...14,381,259
Ensembl chr 1:14,239,178...14,380,459 		JBrowse link
G Flvcr1 feline leukemia virus subgroup C cellular receptor 1 acts_upstream_of_or_within IMP (PMID:23187127) MGI PMID:23187127 NCBI chr 1:190,738,029...190,758,387
Ensembl chr 1:190,738,044...190,758,355 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within IMP (PMID:9409679) MGI PMID:9409679 NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634 		JBrowse link
G Fuz fuzzy planar cell polarity protein involved_in IMP (MGI:4438317|PMID:19767740), (MGI:5296432|PMID:21935430), (MGI:5498583|PMID:23806618) UniProt PMID:19767740 PMID:21935430 PMID:23806618 MGI:4438317 MGI:5296432 MGI:5498583 NCBI chr 7:44,545,517...44,552,053
Ensembl chr 7:44,545,503...44,552,055 		JBrowse link
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IGI (PMID:15728667) MGI PMID:15728667 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611 		JBrowse link
G Gsc goosecoid homeobox acts_upstream_of_or_within IMP (PMID:7555718)
(PMID:7555726)		 MGI PMID:7555718 PMID:7555726 NCBI chr12:104,437,468...104,439,495
Ensembl chr12:104,437,468...104,439,589 		JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within IGI (PMID:15634706) MGI PMID:15634706 NCBI chr 6:52,139,389...52,141,808
Ensembl chr 6:52,139,397...52,141,811 		JBrowse link
G Hoxa3 homeobox A3 involved_in
acts_upstream_of_or_within		 IBA
IGI		 (PMID:9441667) GO_Central
MGI		 PMID:9441667 GO_REF:0000033 NCBI chr 6:52,146,039...52,190,316
Ensembl chr 6:52,146,042...52,190,316 		JBrowse link
G Hoxa4 homeobox A4 acts_upstream_of_or_within
involved_in		 IMP
IBA
IGI		 (PMID:7918106)
(PMID:7628700)		 MGI
GO_Central		 PMID:7628700 PMID:7918106 GO_REF:0000033 NCBI chr 6:52,166,662...52,168,683
Ensembl chr 6:52,166,651...52,168,733 		JBrowse link
G Hoxa5 homeobox A5 acts_upstream_of_or_within IMP (PMID:17417799)
(PMID:7901120), (PMID:9603431)		 MGI PMID:7901120 PMID:9603431 PMID:17417799 NCBI chr 6:52,178,768...52,181,437
Ensembl chr 6:52,178,734...52,181,567 		JBrowse link
G Hoxa7 homeobox A7 acts_upstream_of_or_within IGI (PMID:9784603) MGI PMID:9784603 NCBI chr 6:52,191,471...52,198,757
Ensembl chr 6:52,191,471...52,198,834 		JBrowse link
G Hoxa9 homeobox A9 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:52,200,077...52,203,169
Ensembl chr 6:52,200,080...52,208,069 		JBrowse link
G Hoxb1 homeobox B1 acts_upstream_of_or_within IGI (PMID:10885747) MGI PMID:10885747 NCBI chr11:96,256,547...96,259,082
Ensembl chr11:96,256,578...96,259,082 		JBrowse link
G Hoxb2 homeobox B2 acts_upstream_of_or_within IGI (PMID:10885747) MGI PMID:10885747 NCBI chr11:96,242,458...96,244,846
Ensembl chr11:96,241,351...96,244,838 		JBrowse link
G Hoxb3 homeobox B3 acts_upstream_of_or_within
involved_in		 IMP
IGI
IBA		 (PMID:9441667)
(PMID:10885747)		 MGI
GO_Central		 PMID:9441667 PMID:10885747 GO_REF:0000033 NCBI chr11:96,197,927...96,238,756
Ensembl chr11:96,214,152...96,238,756 		JBrowse link
G Hoxb4 homeobox B4 acts_upstream_of_or_within
involved_in		 IGI
IBA		 (PMID:10885747)
(PMID:7628700)		 MGI
GO_Central		 PMID:7628700 PMID:10885747 GO_REF:0000033 NCBI chr11:96,209,093...96,212,464
Ensembl chr11:96,209,093...96,212,464 		JBrowse link
G Hoxb5 homeobox B5 acts_upstream_of_or_within IGI
IMP		 (PMID:7828847)
(PMID:10885747)		 MGI PMID:7828847 PMID:10885747 NCBI chr11:96,194,338...96,196,947
Ensembl chr11:96,194,162...96,196,947 		JBrowse link
G Hoxb6 homeobox B6 acts_upstream_of_or_within IGI (PMID:10885747) MGI PMID:10885747 NCBI chr11:96,183,647...96,192,395
Ensembl chr11:96,183,302...96,192,395 		JBrowse link
G Hoxb7 homeobox B7 acts_upstream_of_or_within IGI
IMP		 (PMID:10885747)
(PMID:9784603)		 MGI PMID:9784603 PMID:10885747 NCBI chr11:96,176,431...96,180,989
Ensembl chr11:96,177,449...96,180,988 		JBrowse link
G Hoxb8 homeobox B8 acts_upstream_of_or_within IGI
IMP		 (PMID:10885747)
(PMID:10559485)		 MGI PMID:10559485 PMID:10885747 NCBI chr11:96,170,227...96,176,151
Ensembl chr11:96,172,731...96,176,141 		JBrowse link
G Hoxb9 homeobox B9 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:96,162,156...96,167,421
Ensembl chr11:96,162,283...96,167,421 		JBrowse link
G Hoxc4 homeobox C4 involved_in IBA GO_Central GO_REF:0000033 NCBI chr15:102,926,531...102,945,281
Ensembl chr15:102,927,366...102,945,278 		JBrowse link
G Hoxc9 homeobox C9 involved_in
acts_upstream_of_or_within		 IBA
IMP		 (PMID:7547473) GO_Central
MGI		 PMID:7547473 GO_REF:0000033 NCBI chr15:102,885,467...102,893,324
Ensembl chr15:102,884,874...102,893,531 		JBrowse link
G Hoxd10 homeobox D10 acts_upstream_of_or_within IGI (PMID:10642795) MGI PMID:10642795 NCBI chr 2:74,514,617...74,525,450
Ensembl chr 2:74,522,268...74,525,449 		JBrowse link
G Hoxd3 homeobox D3 acts_upstream_of_or_within
involved_in		 IMP
IBA
IGI		 (PMID:7910549), (PMID:7913519)
(PMID:7913519)		 MGI
GO_Central		 PMID:7910549 PMID:7913519 GO_REF:0000033 NCBI chr 2:74,542,337...74,578,615
Ensembl chr 2:74,542,271...74,578,786 		JBrowse link
G Hoxd4 homeobox D4 acts_upstream_of_or_within
involved_in		 IGI
IBA
IMP		 (PMID:7628700)
(PMID:7750651)		 MGI
GO_Central		 PMID:7628700 PMID:7750651 GO_REF:0000033 NCBI chr 2:74,552,322...74,559,504
Ensembl chr 2:74,542,273...74,559,504 		JBrowse link
G Hoxd9 homeobox D9 involved_in
acts_upstream_of_or_within		 IBA
IGI		 (PMID:10642795) GO_Central
MGI		 PMID:10642795 GO_REF:0000033 NCBI chr 2:74,528,107...74,530,552
Ensembl chr 2:74,528,071...74,530,552 		JBrowse link
G Hspg2 perlecan (heparan sulfate proteoglycan 2) acts_upstream_of_or_within IMP (PMID:10579729) MGI PMID:10579729 NCBI chr 4:137,196,062...137,297,941
Ensembl chr 4:137,196,080...137,297,941 		JBrowse link
G Mdfi MyoD family inhibitor acts_upstream_of_or_within IMP (PMID:9799236) MGI PMID:9799236 NCBI chr17:48,126,253...48,145,616
Ensembl chr17:48,126,253...48,145,616 		JBrowse link
G Mef2c myocyte enhancer factor 2C acts_upstream_of_or_within IMP (PMID:17420000) MGI PMID:17420000 NCBI chr13:83,652,136...83,815,197
Ensembl chr13:83,652,153...83,815,199 		JBrowse link
G Megf8 multiple EGF-like-domains 8 involved_in IMP (MGI:5551355|PMID:24052814) UniProt PMID:24052814 MGI:5551355 NCBI chr 7:25,016,589...25,065,342
Ensembl chr 7:25,016,589...25,065,342 		JBrowse link
G Men1 multiple endocrine neoplasia 1 acts_upstream_of_or_within IMP (PMID:17927973) MGI PMID:17927973 NCBI chr19:6,385,009...6,390,924
Ensembl chr19:6,385,009...6,390,921 		JBrowse link
G Mycn v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived acts_upstream_of_or_within IMP (PMID:17360777) MGI PMID:17360777 NCBI chr12:12,986,094...12,991,837
Ensembl chr12:12,986,094...12,991,915 		JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within IMP (PMID:10929709) MGI PMID:10929709 NCBI chr10:107,318,769...107,322,787
Ensembl chr10:107,318,769...107,321,995 		JBrowse link
G Osr2 odd-skipped related 2 acts_upstream_of_or_within IMP (PMID:15175245) MGI PMID:15175245 NCBI chr15:35,296,244...35,303,451
Ensembl chr15:35,296,244...35,303,451 		JBrowse link
G Pcgf2 polycomb group ring finger 2 acts_upstream_of_or_within IGI (PMID:11290297) MGI PMID:11290297 NCBI chr11:97,579,647...97,593,260
Ensembl chr11:97,579,649...97,591,323 		JBrowse link
G Pds5a PDS5 cohesin associated factor A acts_upstream_of_or_within IC (MGI:3847057|PMID:19412548) GOC PMID:19412548 MGI:3847057 NCBI chr 5:65,763,062...65,855,579
Ensembl chr 5:65,763,064...65,855,616 		JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within IGI
IMP		 (PMID:11532916), (PMID:9729491), (PMID:9876178)
(PMID:7758948)		 MGI PMID:7758948 PMID:9729491 PMID:9876178 PMID:11532916 NCBI chr 1:163,072,688...163,142,714
Ensembl chr 1:163,072,688...163,141,279 		JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within IGI (PMID:11532916), (PMID:9729491), (PMID:9876178) MGI PMID:9729491 PMID:9876178 PMID:11532916 NCBI chr 2:30,735,076...30,771,263
Ensembl chr 2:30,724,984...30,771,263 		JBrowse link
G Satb2 special AT-rich sequence binding protein 2 acts_upstream_of_or_within IMP (PMID:16960803)
(PMID:16751105)		 MGI PMID:16751105 PMID:16960803 NCBI chr 1:56,833,145...57,019,350
Ensembl chr 1:56,833,140...57,017,809 		JBrowse link
G Six1 sine oculis-related homeobox 1 acts_upstream_of_or_within IGI (PMID:15788460) MGI PMID:15788460 NCBI chr12:73,088,601...73,093,486
Ensembl chr12:73,086,789...73,100,661 		JBrowse link
G Six2 sine oculis-related homeobox 2 acts_upstream_of_or_within IGI (PMID:15634706) MGI PMID:15634706 NCBI chr17:85,970,276...85,995,682
Ensembl chr17:85,991,705...85,995,702 		JBrowse link
G Six4 sine oculis-related homeobox 4 acts_upstream_of_or_within IGI (PMID:15788460) MGI PMID:15788460 NCBI chr12:73,146,383...73,160,201
Ensembl chr12:73,146,383...73,160,230 		JBrowse link
G Sox11 SRY (sex determining region Y)-box 11 involved_in IMP (MGI:3052265|PMID:15254231) UniProt PMID:15254231 MGI:3052265 NCBI chr12:27,384,267...27,392,717
Ensembl chr12:27,384,263...27,392,573 		JBrowse link
G Tbx15 T-box 15 acts_upstream_of_or_within IGI
IMP		 (PMID:15728667) MGI PMID:15728667 NCBI chr 3:99,147,671...99,261,576
Ensembl chr 3:99,147,697...99,261,575 		JBrowse link
G Twist1 twist basic helix-loop-helix transcription factor 1 acts_upstream_of_or_within IMP (PMID:15030764) MGI PMID:15030764 NCBI chr12:34,007,670...34,009,830
Ensembl chr12:34,007,670...34,009,828 		JBrowse link
G Wnt9a wingless-type MMTV integration site family, member 9A acts_upstream_of_or_within IMP (PMID:16818445) MGI PMID:16818445 NCBI chr11:59,197,675...59,224,378
Ensembl chr11:59,197,754...59,224,378 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within IMP (PMID:9389660) MGI PMID:9389660 NCBI chr18:5,591,330...5,775,468
Ensembl chr18:5,591,860...5,775,467 		JBrowse link
embryonic viscerocranium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chst11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within IMP (PMID:16079159) MGI PMID:16079159 NCBI chr10:82,820,274...83,031,738
Ensembl chr10:82,821,332...83,031,734 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within IMP (PMID:9409679) MGI PMID:9409679 NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634 		JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within IMP (PMID:16221728) MGI PMID:16221728 NCBI chr 6:52,139,389...52,141,808
Ensembl chr 6:52,139,397...52,141,811 		JBrowse link
G Lhx1 LIM homeobox protein 1 involved_in IMP (MGI:3777712|PMID:14695376) UniProt PMID:14695376 MGI:3777712 NCBI chr11:84,408,801...84,416,360
Ensembl chr11:84,409,110...84,416,361 		JBrowse link
G Mef2c myocyte enhancer factor 2C acts_upstream_of_or_within IMP (PMID:17420000) MGI PMID:17420000 NCBI chr13:83,652,136...83,815,197
Ensembl chr13:83,652,153...83,815,199 		JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like involved_in IMP (MGI:5468075|PMID:23267094) BHF-UCL PMID:23267094 MGI:5468075 NCBI chr10:3,918,282...4,117,081
Ensembl chr10:3,923,118...4,117,081 		JBrowse link
G Ndst1 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 acts_upstream_of_or_within IMP (PMID:16020517) MGI PMID:16020517 NCBI chr18:60,817,566...60,907,465
Ensembl chr18:60,817,566...60,881,722 		JBrowse link
G Nipbl NIPBL cohesin loading factor acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:19763162) MGI
GO_Central		 PMID:19763162 GO_REF:0000033 NCBI chr15:8,319,308...8,494,799
Ensembl chr15:8,320,101...8,473,947 		JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) acts_upstream_of_or_within IMP (PMID:17473173) MGI PMID:17473173 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958 		JBrowse link
G Tbx1 T-box 1 involved_in ISS
ISO		 (MGI:1095819|PMID:9268629) UniProt
MGI		 PMID:9268629 GO_REF:0000119 MGI:1095819 MGI:4834177 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421 		JBrowse link
endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Carm1 coactivator-associated arginine methyltransferase 1 acts_upstream_of_or_within IMP (PMID:19725955) MGI PMID:19725955 NCBI chr 9:21,458,163...21,500,763
Ensembl chr 9:21,458,190...21,503,919 		JBrowse link
G Col3a1 collagen, type III, alpha 1 involved_in IMP (PMID:17960558) MGI PMID:17960558 NCBI chr 1:45,350,698...45,388,866
Ensembl chr 1:45,350,698...45,388,866 		JBrowse link
G Dspp dentin sialophosphoprotein acts_upstream_of_or_within IMP (PMID:26972716) MGI PMID:26972716 NCBI chr 5:104,318,569...104,327,993
Ensembl chr 5:104,318,578...104,327,993 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in IMP (PMID:22359666) MGI PMID:22359666 NCBI chr10:24,513,812...24,588,057
Ensembl chr10:24,513,812...24,588,057 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within IMP
IGI		 (PMID:21310272), (PMID:29545125) MGI PMID:21310272 PMID:29545125 NCBI chr15:52,931,657...53,209,579
Ensembl chr15:52,927,434...53,209,555 		JBrowse link
G Ext2 exostosin glycosyltransferase 2 acts_upstream_of_or_within IGI (PMID:21310272) MGI PMID:21310272 NCBI chr 2:93,525,978...93,652,913
Ensembl chr 2:93,491,373...93,652,913 		JBrowse link
G Ihh Indian hedgehog involved_in IMP (MGI:1344187|PMID:10465785), (MGI:1351296|PMID:10631175) UniProt PMID:10465785 PMID:10631175 MGI:1344187 MGI:1351296 NCBI chr 1:74,984,474...74,990,831
Ensembl chr 1:74,984,474...74,990,831 		JBrowse link
G Sox9 SRY (sex determining region Y)-box 9 acts_upstream_of_or_within IMP (PMID:11371614) MGI PMID:11371614 NCBI chr11:112,673,036...112,678,583
Ensembl chr11:112,673,050...112,678,586 		JBrowse link
endochondral ossification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alpl alkaline phosphatase, liver/bone/kidney acts_upstream_of_or_within IMP (PMID:20684022) MGI PMID:20684022 NCBI chr 4:137,469,042...137,523,695
Ensembl chr 4:137,469,044...137,523,695 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in IMP (MGI:4418577|PMID:20059955) UniProt PMID:20059955 MGI:4418577 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Bmp6 bone morphogenetic protein 6 acts_upstream_of_or_within IMP (PMID:9664685) MGI PMID:9664685 NCBI chr13:38,529,098...38,684,283
Ensembl chr13:38,529,083...38,684,278 		JBrowse link
G Bpnt2 3'(2'), 5'-bisphosphate nucleotidase 2 acts_upstream_of_or_within IMP (PMID:18539921) MGI PMID:18539921 NCBI chr 4:4,762,484...4,793,306
Ensembl chr 4:4,762,484...4,793,355 		JBrowse link
G Cbs cystathionine beta-synthase acts_upstream_of_or_within IMP (PMID:15622513) MGI PMID:15622513 NCBI chr17:31,831,602...31,856,170
Ensembl chr17:31,827,868...31,856,212 		JBrowse link
G Col10a1 collagen, type X, alpha 1 involved_in ISO RGD
MGI		 PMID:10853827 GO_REF:0000096 MGI:4417868 RGD:704421 NCBI chr10:34,265,977...34,273,081
Ensembl chr10:34,265,977...34,273,081 		JBrowse link
G Col13a1 collagen, type XIII, alpha 1 involved_in IEP (MGI:2157681|PMID:11470398) UniProt PMID:11470398 MGI:2157681 NCBI chr10:61,674,013...61,814,985
Ensembl chr10:61,674,015...61,814,887 		JBrowse link
G Col1a1 collagen, type I, alpha 1 acts_upstream_of_or_within IMP (PMID:8130375) MGI PMID:8130375 NCBI chr11:94,827,050...94,843,868
Ensembl chr11:94,827,050...94,843,868 		JBrowse link
G Col2a1 collagen, type II, alpha 1 acts_upstream_of_or_within IMP (PMID:10100048) MGI PMID:10100048 NCBI chr15:97,873,483...97,902,525
Ensembl chr15:97,873,483...97,902,576 		JBrowse link
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 acts_upstream_of_or_within IMP (PMID:21148564) MGI PMID:21148564 NCBI chr 8:68,809,433...69,188,270
Ensembl chr 8:68,809,433...69,187,798 		JBrowse link
G Cst5 cystatin D involved_in IMP (PMID:16680148) MGI PMID:16680148 NCBI chr 2:149,247,242...149,252,217
Ensembl chr 2:149,246,977...149,252,213 		JBrowse link
G Dlx5 distal-less homeobox 5 involved_in IMP (MGI:4413604|PMID:19956613) UniProt PMID:19956613 MGI:4413604 NCBI chr 6:6,877,801...6,882,068
Ensembl chr 6:6,877,805...6,882,085 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in IMP (PMID:24770645) MGI PMID:24770645 NCBI chr10:24,513,812...24,588,057
Ensembl chr10:24,513,812...24,588,057 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within IMP (PMID:21185280), (PMID:23958822) MGI PMID:21185280 PMID:23958822 NCBI chr15:52,931,657...53,209,579
Ensembl chr15:52,927,434...53,209,555 		JBrowse link
G Fgf18 fibroblast growth factor 18 acts_upstream_of_or_within IMP (PMID:17014841) MGI PMID:17014841 NCBI chr11:33,066,970...33,097,400
Ensembl chr11:33,067,430...33,097,400 		JBrowse link
G Foxc1 forkhead box C1 involved_in IMP (MGI:5641778|PMID:25808752) UniProt PMID:25808752 MGI:5641778 NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459 		JBrowse link
G Gnas GNAS complex locus acts_upstream_of_or_within IMP (PMID:15797856) MGI PMID:15797856 NCBI chr 2:174,126,113...174,188,537
Ensembl chr 2:174,126,113...174,188,537 		JBrowse link
G Hspg2 perlecan (heparan sulfate proteoglycan 2) acts_upstream_of_or_within IMP (PMID:10579729) MGI PMID:10579729 NCBI chr 4:137,196,062...137,297,941
Ensembl chr 4:137,196,080...137,297,941 		JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within IMP (PMID:26098911) MGI PMID:26098911 NCBI chr 3:68,799,832...68,911,939
Ensembl chr 3:68,799,832...68,911,892 		JBrowse link
G Inppl1 inositol polyphosphate phosphatase-like 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 7:101,471,839...101,487,419
Ensembl chr 7:101,471,839...101,487,436 		JBrowse link
G Mef2c myocyte enhancer factor 2C acts_upstream_of_or_within IMP
IGI		 (PMID:17336904) MGI PMID:17336904 NCBI chr13:83,652,136...83,815,197
Ensembl chr13:83,652,153...83,815,199 		JBrowse link
G Mef2d myocyte enhancer factor 2D acts_upstream_of_or_within IGI (PMID:17336904) MGI PMID:17336904 NCBI chr 3:88,049,248...88,079,398
Ensembl chr 3:88,049,679...88,079,393 		JBrowse link
G Mmp13 matrix metallopeptidase 13 involved_in IMP
ISO		 (MGI:3771509|PMID:17987127) UniProt
RGD		 PMID:10646117 PMID:17987127 MGI:3771509 RGD:10043159 NCBI chr 9:7,272,514...7,283,333
Ensembl chr 9:7,272,514...7,283,331 		JBrowse link
G Mmp14 matrix metallopeptidase 14 (membrane-inserted) acts_upstream_of_or_within IGI (PMID:18022611) MGI PMID:18022611 NCBI chr14:54,669,055...54,679,913
Ensembl chr14:54,669,069...54,682,821 		JBrowse link
G Mmp16 matrix metallopeptidase 16 acts_upstream_of_or_within IGI (PMID:18022611) MGI PMID:18022611 NCBI chr 4:17,853,072...18,117,479
Ensembl chr 4:17,852,893...18,119,145 		JBrowse link
G Nab1 Ngfi-A binding protein 1 acts_upstream_of_or_within IGI (PMID:16136673) MGI PMID:16136673 NCBI chr 1:52,494,146...52,539,553
Ensembl chr 1:52,496,453...52,539,838 		JBrowse link
G Nab2 Ngfi-A binding protein 2 acts_upstream_of_or_within IGI (PMID:16136673) MGI PMID:16136673 NCBI chr10:127,496,787...127,502,572
Ensembl chr10:127,496,787...127,504,437 		JBrowse link
G Nfix nuclear factor I/X involved_in IMP (PMID:17353270) MGI PMID:17353270 NCBI chr 8:85,431,341...85,527,086
Ensembl chr 8:85,426,505...85,526,973 		JBrowse link
G Npr2 natriuretic peptide receptor 2 involved_in IMP (PMID:15572448)
(PMID:17728275)
(PMID:15722353)		 MGI PMID:15572448 PMID:15722353 PMID:17728275 NCBI chr 4:43,629,015...43,651,437
Ensembl chr 4:43,631,935...43,651,244 		JBrowse link
G Pex7 peroxisomal biogenesis factor 7 acts_upstream_of_or_within IMP (PMID:12915479) MGI PMID:12915479 NCBI chr10:19,735,836...19,783,420
Ensembl chr10:19,729,646...19,783,435 		JBrowse link
G Phospho1 phosphatase, orphan 1 acts_upstream_of_or_within IMP (PMID:20684022) MGI PMID:20684022 NCBI chr11:95,715,326...95,722,966
Ensembl chr11:95,715,325...95,722,966 		JBrowse link
G Pthlh parathyroid hormone-like peptide acts_upstream_of_or_within IMP (PMID:8895385) MGI PMID:8895385 NCBI chr 6:147,153,607...147,165,511
Ensembl chr 6:147,153,599...147,165,681 		JBrowse link
G Runx2 runt related transcription factor 2 acts_upstream_of_or_within IMP (PMID:10072783) MGI PMID:10072783 NCBI chr17:44,806,873...45,125,518
Ensembl chr17:44,806,874...45,125,684 		JBrowse link
G Scx scleraxis scleraxis bHLH transcription factor involved_in IMP (MGI:4418577|PMID:20059955) UniProt PMID:20059955 MGI:4418577 NCBI chr15:76,341,594...76,343,668
Ensembl chr15:76,341,652...76,343,658 		JBrowse link
G Sik3 SIK family kinase 3 acts_upstream_of_or_within IMP (PMID:22318228) MGI PMID:22318228 NCBI chr 9:45,924,099...46,135,492
Ensembl chr 9:45,924,118...46,135,492 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3, neutral acts_upstream_of_or_within IMP (PMID:17591962)
(PMID:24505141)
(PMID:21788370)		 MGI PMID:17591962 PMID:21788370 PMID:24505141 NCBI chr 8:106,979,180...107,064,597
Ensembl chr 8:106,979,180...107,064,620 		JBrowse link
G Tek TEK receptor tyrosine kinase ISO RGD PMID:11735002 RGD:1601509 NCBI chr 4:94,627,322...94,763,213
Ensembl chr 4:94,627,526...94,763,213 		JBrowse link
G Tmem119 transmembrane protein 119 involved_in IMP (MGI:5543589|PMID:22416756) ARUK-UCL PMID:22416756 MGI:5543589 NCBI chr 5:113,931,790...113,938,457
Ensembl chr 5:113,931,790...113,938,577 		JBrowse link
frontal suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IMP (PMID:20570969) MGI PMID:20570969 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within IMP (PMID:10742104) MGI PMID:10742104 NCBI chr13:53,620,917...53,626,816
Ensembl chr13:53,620,920...53,627,110 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 ISO RGD PMID:12416537 RGD:2302805 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 ISO RGD PMID:12416537 RGD:2302805 NCBI chr 1:186,354,984...186,441,504
Ensembl chr 1:186,354,989...186,438,186 		JBrowse link
G Tgfb3 transforming growth factor, beta 3 ISO RGD PMID:12416537 RGD:2302805 NCBI chr12:86,103,517...86,125,815
Ensembl chr12:86,103,519...86,125,815 		JBrowse link
growth plate cartilage axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stc1 stanniocalcin 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr14:69,266,738...69,278,850
Ensembl chr14:69,266,687...69,279,253 		JBrowse link
growth plate cartilage chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col27a1 collagen, type XXVII, alpha 1 acts_upstream_of_or_within IMP (PMID:22206015) MGI PMID:22206015 NCBI chr 4:63,132,246...63,253,228
Ensembl chr 4:63,132,241...63,253,228 		JBrowse link
G Poc1a POC1 centriolar protein A acts_upstream_of_or_within IMP (PMID:26496357) MGI PMID:26496357 NCBI chr 9:106,156,177...106,227,721
Ensembl chr 9:106,158,260...106,227,720 		JBrowse link
growth plate cartilage chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in IMP (PMID:18638549) MGI PMID:18638549 NCBI chr 2:73,646,853...73,723,094
Ensembl chr 2:73,646,853...73,722,983 		JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within IMP (PMID:26098911) MGI PMID:26098911 NCBI chr 3:68,799,832...68,911,939
Ensembl chr 3:68,799,832...68,911,892 		JBrowse link
G Nppc natriuretic peptide type C involved_in IMP (MGI:2177134|PMID:11259675) UniProt PMID:11259675 MGI:2177134 NCBI chr 1:86,594,015...86,598,295
Ensembl chr 1:86,594,013...86,598,293 		JBrowse link
growth plate cartilage chondrocyte growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cst5 cystatin D involved_in IMP (PMID:16680148) MGI PMID:16680148 NCBI chr 2:149,247,242...149,252,217
Ensembl chr 2:149,246,977...149,252,213 		JBrowse link
G Rarg retinoic acid receptor, gamma involved_in IMP (MGI:3848572|PMID:19389355) UniProt PMID:19389355 MGI:3848572 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
G Sox9 SRY (sex determining region Y)-box 9 involved_in IMP (MGI:5317468|PMID:22421045) UniProt PMID:22421045 MGI:5317468 NCBI chr11:112,673,036...112,678,583
Ensembl chr11:112,673,050...112,678,586 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor II acts_upstream_of_or_within IMP (PMID:21420963) MGI PMID:21420963 NCBI chr 9:115,916,763...116,004,431
Ensembl chr 9:115,913,361...116,004,428 		JBrowse link
growth plate cartilage chondrocyte morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Matn1 matrilin 1, cartilage matrix protein acts_upstream_of_or_within IMP (PMID:16877353) MGI PMID:16877353 NCBI chr 4:130,671,696...130,682,787
Ensembl chr 4:130,671,696...130,682,786 		JBrowse link
growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in IMP (PMID:18638549) MGI PMID:18638549 NCBI chr 2:73,646,853...73,723,094
Ensembl chr 2:73,646,853...73,722,983 		JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist involved_in IEP (MGI:5315688|PMID:19113921) BHF-UCL PMID:19113921 MGI:5315688 NCBI chr 4:82,799,988...82,803,388
Ensembl chr 4:82,799,988...82,803,385 		JBrowse link
G Nppc natriuretic peptide type C involved_in IMP (MGI:2177134|PMID:11259675) UniProt PMID:11259675 MGI:2177134 NCBI chr 1:86,594,015...86,598,295
Ensembl chr 1:86,594,013...86,598,293 		JBrowse link
growth plate cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col2a1 collagen, type II, alpha 1 ISO spheno-occipital synchondrosis RGD PMID:20591638 RGD:8661256 NCBI chr15:97,873,483...97,902,525
Ensembl chr15:97,873,483...97,902,576 		JBrowse link
G Col9a1 collagen, type IX, alpha 1 acts_upstream_of_or_within IGI
IMP		 (PMID:18467703)
(PMID:18191556)		 MGI PMID:18191556 PMID:18467703 NCBI chr 1:24,216,670...24,291,819
Ensembl chr 1:24,216,691...24,291,765 		JBrowse link
G Comp cartilage oligomeric matrix protein acts_upstream_of_or_within IGI
IMP		 (PMID:18191556)
(PMID:17588960)
(PMID:18467703)		 MGI PMID:17588960 PMID:18191556 PMID:18467703 NCBI chr 8:70,826,186...70,834,721
Ensembl chr 8:70,826,208...70,834,716 		JBrowse link
G Fosl2 fos-like antigen 2 acts_upstream_of_or_within IMP (PMID:15509771) MGI PMID:15509771 NCBI chr 5:32,292,599...32,315,184
Ensembl chr 5:32,293,145...32,315,186 		JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within IMP (PMID:26098911) MGI PMID:26098911 NCBI chr 3:68,799,832...68,911,939
Ensembl chr 3:68,799,832...68,911,892 		JBrowse link
G Mmp13 matrix metallopeptidase 13 acts_upstream_of_or_within IGI (PMID:21444811) MGI PMID:21444811 NCBI chr 9:7,272,514...7,283,333
Ensembl chr 9:7,272,514...7,283,331 		JBrowse link
G Npr2 natriuretic peptide receptor 2 involved_in IMP (PMID:23065701)
(PMID:17728275)		 MGI PMID:17728275 PMID:23065701 NCBI chr 4:43,629,015...43,651,437
Ensembl chr 4:43,631,935...43,651,244 		JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within IGI (PMID:19389355) MGI PMID:19389355 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within IGI (PMID:19389355) MGI PMID:19389355 NCBI chr14:5,387,365...6,038,924
Ensembl chr14:5,650,540...6,038,924 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within IGI (PMID:19389355) MGI PMID:19389355 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor II acts_upstream_of_or_within IGI (PMID:21420963) MGI PMID:21420963 NCBI chr 9:115,916,763...116,004,431
Ensembl chr 9:115,913,361...116,004,428 		JBrowse link
G Thbs1 thrombospondin 1 acts_upstream_of_or_within IMP
IGI		 (PMID:18467703) MGI PMID:18467703 NCBI chr 2:117,942,357...117,957,614
Ensembl chr 2:117,942,357...117,957,614 		JBrowse link
G Thbs3 thrombospondin 3 acts_upstream_of_or_within IMP
IGI		 (PMID:18467703) MGI PMID:18467703 NCBI chr 3:89,122,470...89,134,148
Ensembl chr 3:89,122,487...89,134,144 		JBrowse link
G Zmpste24 zinc metallopeptidase, STE24 acts_upstream_of_or_within IMP (PMID:11923874) MGI PMID:11923874 NCBI chr 4:120,916,434...120,955,452
Ensembl chr 4:120,916,434...120,955,438 		JBrowse link
lambdoid suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IMP (PMID:20570969) MGI PMID:20570969 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611 		JBrowse link
negative regulation of bone trabecula formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chad chondroadherin acts_upstream_of_or_within IMP (PMID:23755099) MGI PMID:23755099 NCBI chr11:94,455,873...94,459,953
Ensembl chr11:94,455,873...94,459,953 		JBrowse link
G Cyp27b1 cytochrome P450, family 27, subfamily b, polypeptide 1 involved_in ISO RGD
MGI		 PMID:32231239 GO_REF:0000096 MGI:4417868 RGD:32716373 NCBI chr10:126,884,115...126,891,897
Ensembl chr10:126,884,119...126,888,875 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:113,579,020...113,588,993
Ensembl chr 2:113,576,509...113,588,991 		JBrowse link
G Vdr vitamin D (1,25-dihydroxyvitamin D3) receptor involved_in ISO RGD
MGI		 PMID:32231239 GO_REF:0000096 MGI:4417868 RGD:32716373 NCBI chr15:97,752,308...97,806,177
Ensembl chr15:97,752,306...97,808,511 		JBrowse link
negative regulation of growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dspp dentin sialophosphoprotein acts_upstream_of_or_within IMP (PMID:26972716) MGI PMID:26972716 NCBI chr 5:104,318,569...104,327,993
Ensembl chr 5:104,318,578...104,327,993 		JBrowse link
perichondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within IMP (PMID:28768899) MGI PMID:28768899 NCBI chr15:52,931,657...53,209,579
Ensembl chr15:52,927,434...53,209,555 		JBrowse link
regulation of growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Carm1 coactivator-associated arginine methyltransferase 1 acts_upstream_of_or_within IMP (PMID:19725955) MGI PMID:19725955 NCBI chr 9:21,458,163...21,500,763
Ensembl chr 9:21,458,190...21,503,919 		JBrowse link
G Por cytochrome p450 oxidoreductase involved_in ISO positive regulation RGD
MGI		 PMID:19264869 GO_REF:0000096 MGI:4417868 RGD:2316785 NCBI chr 5:135,698,894...135,764,180
Ensembl chr 5:135,698,887...135,764,180 		JBrowse link
sagittal suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IMP (PMID:20570969) MGI PMID:20570969 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28574
    developmental process 7377
      anatomical structure morphogenesis 3041
        animal organ morphogenesis 1198
          skeletal system morphogenesis 270
            bone morphogenesis + 117
            bone trabecula formation + 14
            cartilage condensation + 22
            embryonic skeletal system morphogenesis + 111
Path 2
Term Annotations click to browse term
  biological_process 28574
    developmental process 7377
      anatomical structure development 6849
        multicellular organism development 5443
          system development 4671
            skeletal system development 591
              skeletal system morphogenesis 270
                bone morphogenesis + 117
                bone trabecula formation + 14
                cartilage condensation + 22
                embryonic skeletal system morphogenesis + 111
paths to the root