Wnt9b (wingless-type MMTV integration site family, member 9B) - Rat Genome Database

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Gene: Wnt9b (wingless-type MMTV integration site family, member 9B) Mus musculus
Analyze
Symbol: Wnt9b
Name: wingless-type MMTV integration site family, member 9B
RGD ID: 1319984
MGI Page MGI
Description: Enables co-receptor binding activity and signaling receptor binding activity. Acts upstream of or within several processes, including Wnt signaling pathway; chordate embryonic development; and kidney development. Predicted to be located in extracellular region. Predicted to be part of Wnt-Frizzled-LRP5/6 complex. Predicted to be active in extracellular space. Is expressed in several structures, including central nervous system; epithelium; genitourinary system; heart; and surface ectoderm. Orthologous to human WNT9B (Wnt family member 9B).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cl; clf; clf1; MGC124412; protein Wnt-9b; wingless-type MMTV integration site 15; wingless-type MMTV integration site 9B; wingless-type MMTV integration site family, member 15; wnt-14b; wnt-15; Wnt1; Wnt14; Wnt14b; Wnt15
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911103,618,188 - 103,666,098 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11103,618,190 - 103,640,647 (-)EnsemblGRCm39 Ensembl
GRCm3811103,727,362 - 103,775,272 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11103,727,364 - 103,749,821 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711103,588,677 - 103,611,135 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611103,543,453 - 103,565,911 (-)NCBIMGSCv36mm8
Celera11115,442,222 - 115,464,694 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1167.47NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
animal organ morphogenesis  (TAS)
branching involved in ureteric bud morphogenesis  (IGI,IMP)
branching morphogenesis of an epithelial tube  (IMP)
canonical Wnt signaling pathway  (IBA,IGI,ISO)
cell fate commitment  (IBA)
cell-cell signaling  (TAS)
cellular response to starvation  (IEP)
collecting duct development  (IMP)
embryonic cranial skeleton morphogenesis  (IMP)
establishment of planar polarity involved in nephron morphogenesis  (IMP)
in utero embryonic development  (IMP)
kidney development  (IMP)
kidney morphogenesis  (IMP)
kidney rudiment formation  (IMP)
male genitalia development  (IMP)
mesenchymal stem cell maintenance involved in nephron morphogenesis  (IMP)
mesonephric duct formation  (IMP)
mesonephric tubule development  (IGI,IMP)
metanephric tubule development  (IMP)
metanephric tubule formation  (IMP)
midbrain dopaminergic neuron differentiation  (ISO)
negative regulation of stem cell population maintenance  (ISO)
nephron tubule morphogenesis  (IMP)
neuron differentiation  (IBA)
non-canonical Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation  (ISO)
positive regulation of catalytic activity  (IMP)
regulation of asymmetric cell division  (IMP)
regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis  (IDA,IMP)
regulation of protein phosphorylation  (IMP)
regulation of tube size  (IMP)
roof of mouth development  (IMP)
signal transduction  (TAS)
uterus morphogenesis  (IMP)
Wnt signaling pathway  (IMP)
Wnt signaling pathway, planar cell polarity pathway  (IMP)

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. MGD IEA MGD IEA
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. The Wnt Homepage Roel Nusse - Howard Hughes Medical Institute and the Department of Developmental Biology at Stanford University, California, USA
8. Alternative wnt signaling is initiated by distinct receptors. van Amerongen R, etal., Sci Signal. 2008 Sep 2;1(35):re9.
Additional References at PubMed
PMID:3491125   PMID:3491126   PMID:7101202   PMID:7601909   PMID:7767007   PMID:7986793   PMID:8288729   PMID:8854874   PMID:8889548   PMID:9138502   PMID:9441749   PMID:9889131  
PMID:10349636   PMID:10585256   PMID:10781587   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11353389   PMID:11520664   PMID:11786923   PMID:11829488   PMID:11914369   PMID:12412008  
PMID:12477932   PMID:12573259   PMID:12753872   PMID:12915323   PMID:14681479   PMID:15329828   PMID:15690355   PMID:15781699   PMID:15880404   PMID:15930111   PMID:16054034   PMID:16141072  
PMID:16141073   PMID:16216236   PMID:16352730   PMID:16496313   PMID:16602821   PMID:16678101   PMID:16998816   PMID:17036046   PMID:17300925   PMID:17425782   PMID:17537789   PMID:17804636  
PMID:17826763   PMID:17906694   PMID:17943183   PMID:18287559   PMID:18351675   PMID:18364260   PMID:18508041   PMID:18586087   PMID:18604206   PMID:18635608   PMID:18682239   PMID:18830900  
PMID:18991257   PMID:19060336   PMID:19185060   PMID:19282366   PMID:19543268   PMID:19562671   PMID:19591821   PMID:19700620   PMID:19715689   PMID:19809516   PMID:19820125   PMID:19829382  
PMID:19906864   PMID:19961844   PMID:20040500   PMID:20093360   PMID:20439720   PMID:20562862   PMID:20702564   PMID:20823064   PMID:20940229   PMID:21035938   PMID:21041481   PMID:21212101  
PMID:21237142   PMID:21248711   PMID:21267068   PMID:21281623   PMID:21303954   PMID:21309073   PMID:21339645   PMID:21350016   PMID:21420949   PMID:21600200   PMID:21613322   PMID:21852398  
PMID:21873635   PMID:21903675   PMID:21905163   PMID:21936019   PMID:21963425   PMID:21982646   PMID:22022457   PMID:22166339   PMID:22461561   PMID:22511595   PMID:22677559   PMID:22833126  
PMID:22912798   PMID:22956684   PMID:23190887   PMID:23260145   PMID:23362349   PMID:23555292   PMID:23616926   PMID:23704941   PMID:23762375   PMID:23824573   PMID:23884445   PMID:23974041  
PMID:24151333   PMID:24206222   PMID:24394376   PMID:24440154   PMID:24550112   PMID:24586192   PMID:24752894   PMID:24852367   PMID:24852369   PMID:24952961   PMID:25139858   PMID:25257647  
PMID:25381013   PMID:25587709   PMID:25641696   PMID:25758227   PMID:25803581   PMID:25896202   PMID:26047795   PMID:26243870   PMID:26610373   PMID:26655896   PMID:26658320   PMID:26661618  
PMID:26771085   PMID:27362799   PMID:27480037   PMID:27582005   PMID:28760814   PMID:28813421   PMID:28834739   PMID:29056552   PMID:29129523   PMID:29158444   PMID:29184203   PMID:29240767  
PMID:29705331   PMID:29712641   PMID:29771971   PMID:29945868   PMID:30352686   PMID:30940800   PMID:30978219   PMID:31118233   PMID:31167144   PMID:31558711   PMID:32141129   PMID:32253237  
PMID:32324134   PMID:32390226   PMID:32457899   PMID:32464196   PMID:32554463   PMID:32913205   PMID:33141892   PMID:33681192   PMID:33737325   PMID:34032268   PMID:34590686   PMID:35020897  
PMID:35103284   PMID:35333176   PMID:35364055   PMID:35781558   PMID:35831952   PMID:35905011  


Genomics

Comparative Map Data
Wnt9b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911103,618,188 - 103,666,098 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11103,618,190 - 103,640,647 (-)EnsemblGRCm39 Ensembl
GRCm3811103,727,362 - 103,775,272 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11103,727,364 - 103,749,821 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711103,588,677 - 103,611,135 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611103,543,453 - 103,565,911 (-)NCBIMGSCv36mm8
Celera11115,442,222 - 115,464,694 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1167.47NCBI
WNT9B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381746,833,189 - 46,886,738 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1746,833,201 - 46,886,730 (+)EnsemblGRCh38hg38GRCh38
GRCh371744,928,949 - 44,964,104 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361742,283,967 - 42,309,436 (+)NCBINCBI36Build 36hg18NCBI36
Build 341742,283,966 - 42,309,436NCBI
Celera1741,378,455 - 41,403,922 (+)NCBICelera
Cytogenetic Map17q21.32NCBI
HuRef1740,307,364 - 40,332,821 (+)NCBIHuRef
CHM1_11744,993,095 - 45,018,563 (+)NCBICHM1_1
T2T-CHM13v2.01747,713,050 - 47,748,202 (+)NCBIT2T-CHM13v2.0
Wnt9b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21088,635,330 - 88,657,035 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1088,635,331 - 88,657,035 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1093,673,741 - 93,695,456 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01093,138,896 - 93,160,602 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01088,532,248 - 88,553,957 (-)NCBIRnor_WKY
Rnor_6.01091,785,892 - 91,808,061 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1091,785,893 - 91,807,937 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01091,552,384 - 91,574,275 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41092,880,020 - 92,901,641 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11092,897,918 - 92,916,111 (-)NCBI
Celera1087,334,808 - 87,356,461 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Wnt9b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547810,816,405 - 10,841,416 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495547810,816,405 - 10,841,416 (+)NCBIChiLan1.0ChiLan1.0
WNT9B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11710,801,176 - 10,818,516 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01710,616,957 - 10,651,954 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
WNT9B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1910,157,607 - 10,172,664 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl910,149,842 - 10,172,654 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha910,125,720 - 10,132,894 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0911,755,792 - 11,762,969 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl911,740,175 - 11,762,959 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1910,766,706 - 10,773,876 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0916,748,106 - 16,755,280 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0916,695,500 - 16,702,675 (-)NCBIUU_Cfam_GSD_1.0
Wnt9b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560217,290,995 - 17,299,116 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365411,899,039 - 1,939,561 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WNT9B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1217,709,046 - 17,733,431 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11217,709,046 - 17,733,434 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21217,733,977 - 17,737,390 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WNT9B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11660,560,132 - 60,596,782 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1660,581,258 - 60,586,596 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607731,283,829 - 31,320,517 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wnt9b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248492,957,153 - 2,976,179 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248492,971,658 - 2,979,864 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1646
Count of miRNA genes:695
Interacting mature miRNAs:890
Transcripts:ENSMUST00000018630
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179156009107616472Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179813759104502698Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
10045617Heal26_mwound healing/regeneration 26 (mouse)Not determined1192939373112544554Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194063779118022724Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94437183118022724Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301535Pas5b_mpulmonary adenoma susceptibility 5b (mouse)Not determined1196176465108806384Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
12910539Sstapa3_msuseptibility to Staphylococcus aureus infection 3 (mouse)1196897693110603991Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199254187121973369Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100058103121973369Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100254186120887165Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101022590121973369Mouse
14700693Ppiq12_mprepulse inhibition QTL 12 (mouse)11101504820114472363Mouse
14700694Ppiq13_mprepulse inhibition QTL 13 (mouse)11101504820114472363Mouse
14700695Ppiq14_mprepulse inhibition QTL 14 (mouse)11101504820114472363Mouse
14700696Ppiq15_mprepulse inhibition QTL 15 (mouse)11101504820114472363Mouse
1300957Pbd1_mpeak bone density 1 (mouse)Not determined11102344123112384123Mouse
4141612Cia40_mcollagen induced arthritis 40 (mouse)Not determined11103273992115021444Mouse

Markers in Region
Wnt9b  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811103,728,231 - 103,728,820UniSTSGRCm38
MGSCv3711103,589,545 - 103,590,134UniSTSGRCm37
Celera11115,443,090 - 115,443,679UniSTS
Cytogenetic Map11E1UniSTS
cM Map1163.0UniSTS
cM Map1163.0UniSTS
Wnt9b  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811103,730,746 - 103,732,090UniSTSGRCm38
MGSCv3711103,592,060 - 103,593,404UniSTSGRCm37
Celera11115,445,605 - 115,446,949UniSTS
Cytogenetic Map11E1UniSTS
Wnt9b  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811103,729,906 - 103,730,362UniSTSGRCm38
MGSCv3711103,591,220 - 103,591,676UniSTSGRCm37
Celera11115,444,765 - 115,445,221UniSTS
Cytogenetic Map11E1UniSTS
Wnt9b  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811103,729,962 - 103,730,313UniSTSGRCm38
MGSCv3711103,591,276 - 103,591,627UniSTSGRCm37
Celera11115,444,821 - 115,445,172UniSTS
Cytogenetic Map11E1UniSTS
Wnt9b  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811103,731,160 - 103,732,071UniSTSGRCm38
MGSCv3711103,592,474 - 103,593,385UniSTSGRCm37
Celera11115,446,019 - 115,446,930UniSTS
Cytogenetic Map11E1UniSTS
Wnt9b  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11E1UniSTS
cM Map1163.0UniSTS
Wnt9b  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811103,730,750 - 103,732,153UniSTSGRCm38
MGSCv3711103,592,064 - 103,593,467UniSTSGRCm37
Celera11115,445,609 - 115,447,012UniSTS
Cytogenetic Map11E1UniSTS
Wnt9b  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11E1UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000018630   ⟹   ENSMUSP00000018630
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11103,618,190 - 103,640,647 (-)Ensembl
GRCm38.p6 Ensembl11103,727,364 - 103,749,821 (-)Ensembl
RefSeq Acc Id: NM_011719   ⟹   NP_035849
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911103,618,189 - 103,640,647 (-)NCBI
GRCm3811103,727,363 - 103,749,821 (-)ENTREZGENE
MGSCv3711103,588,677 - 103,611,135 (-)RGD
Celera11115,442,222 - 115,464,694 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030245931   ⟹   XP_030101791
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911103,618,188 - 103,666,098 (-)NCBI
GRCm3811103,727,362 - 103,775,272 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_035849   ⟸   NM_011719
- Peptide Label: precursor
- UniProtKB: Q8VI90 (UniProtKB/Swiss-Prot),   O35468 (UniProtKB/Swiss-Prot),   Q2TBA6 (UniProtKB/TrEMBL),   Q8C718 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030101791   ⟸   XM_030245931
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000018630   ⟸   ENSMUST00000018630

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O35468-F1-model_v2 AlphaFold O35468 1-359 view protein structure

Promoters
RGD ID:8676988
Promoter ID:EPDNEW_M16524
Type:multiple initiation site
Name:Wnt9b_1
Description:Mus musculus wingless-type MMTV integration site family, member9B , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811103,749,745 - 103,749,805EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1197020 AgrOrtholog
Ensembl Genes ENSMUSG00000018486 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000018630 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000018630 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.2460.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Wnt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WNT9B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Wnt_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Wnt_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22412 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1197020 ENTREZGENE
NCBI Gene 22412 ENTREZGENE
PANTHER PTHR12027 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12027:SF84 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam wnt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Wnt9b PhenoGen
PRINTS WNTPROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE WNT1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART WNT1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt O35468 ENTREZGENE
  Q2TBA6 ENTREZGENE, UniProtKB/TrEMBL
  Q8C718 ENTREZGENE, UniProtKB/TrEMBL
  Q8VI90 ENTREZGENE
  WNT9B_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q8VI90 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-07-01 Wnt9b  wingless-type MMTV integration site family, member 9B    wingless-type MMTV integration site 9B  Symbol and/or name change 5135510 APPROVED