Hoxa2 (homeobox A2) - Rat Genome Database
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Gene: Hoxa2 (homeobox A2) Mus musculus
Analyze
Symbol: Hoxa2
Name: homeobox A2
RGD ID: 731539
MGI Page MGI
Description: Exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including animal organ development; regionalization; and regulation of transcription by RNA polymerase II. Localizes to nucleus. Is expressed in several structures, including alimentary system; branchial arch; central nervous system; genitourinary system; and sensory organ. Orthologous to human HOXA2 (homeobox A2).
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: AI324701; homeo box A2; homeobox protein Hox-1.11; homeobox protein Hox-A2; Hox-1.1; Hox-1.11; HOX1.11; MGC151482; MGC151484
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39652,139,397 - 52,141,811 (-)NCBIGRCm39mm39
GRCm39 Ensembl652,139,397 - 52,141,811 (-)Ensembl
GRCm38652,162,417 - 52,164,831 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl652,162,417 - 52,164,831 (-)EnsemblGRCm38mm10GRCm38
MGSCv37652,112,510 - 52,114,830 (-)NCBIGRCm37mm9NCBIm37
MGSCv36652,092,094 - 52,094,414 (-)NCBImm8
Celera652,684,174 - 52,686,494 (-)NCBICelera
Cytogenetic Map6B3NCBI
cM Map625.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal auditory brainstem response  (IEA)
abnormal basioccipital bone morphology  (IAGP)
abnormal basisphenoid bone morphology  (IAGP)
abnormal behavior  (IAGP)
abnormal brain development  (IAGP)
abnormal cartilage development  (IAGP)
abnormal cochlear VIII nucleus morphology  (IAGP)
abnormal craniofacial bone morphology  (IAGP)
abnormal craniofacial morphology  (IAGP)
abnormal cranium morphology  (IAGP)
abnormal ear morphology  (IAGP)
abnormal external auditory canal morphology  (IAGP)
abnormal facial motor nucleus morphology  (IAGP)
abnormal facial nerve morphology  (IAGP)
abnormal gait  (IEA)
abnormal glossopharyngeal nerve morphology  (IAGP)
abnormal gonial bone morphology  (IAGP)
abnormal hindbrain morphology  (IAGP)
abnormal hyoid bone lesser horn morphology  (IAGP)
abnormal hyoid bone morphology  (IAGP)
abnormal incudostapedial joint morphology  (IAGP)
abnormal incus morphology  (IAGP)
abnormal malleus morphology  (IAGP)
abnormal Meckel's cartilage morphology  (IAGP)
abnormal middle ear morphology  (IAGP)
abnormal middle ear ossicle morphology  (IAGP)
abnormal nervous system morphology  (IAGP)
abnormal neuron differentiation  (IAGP)
abnormal otic capsule morphology  (IAGP)
abnormal outer ear morphology  (IAGP)
abnormal retrotympanic process morphology  (IAGP)
abnormal rhombomere 2 morphology  (IAGP)
abnormal rhombomere 3 morphology  (IAGP)
abnormal rhombomere boundary morphology  (IAGP)
abnormal rhombomere morphology  (IAGP)
abnormal scala vestibuli morphology  (IAGP)
abnormal skeleton development  (IAGP)
abnormal skeleton morphology  (IAGP)
abnormal snout morphology  (IEA)
abnormal stapedial artery morphology  (IAGP)
abnormal stapes morphology  (IAGP)
abnormal styloglossus muscle morphology  (IAGP)
abnormal styloid process morphology  (IAGP)
abnormal suckling behavior  (IAGP)
abnormal temporal bone morphology  (IAGP)
abnormal temporal bone squamous part morphology  (IAGP)
abnormal temporal bone tympanic part morphology  (IAGP)
abnormal tensor tympani muscle morphology  (IAGP)
abnormal tongue muscle morphology  (IAGP)
abnormal tubotympanic recess morphology  (IAGP)
abnormal tympanic cavity morphology  (IAGP)
abnormal tympanic membrane morphology  (IAGP)
abnormal tympanic ring morphology  (IAGP)
abnormal vagus nerve morphology  (IAGP)
absent hyoid bone lesser horns  (IAGP)
absent malleus processus brevis  (IAGP)
absent outer ear  (IAGP)
absent stapedial artery  (IAGP)
absent stapedius muscle  (IAGP)
absent stapes  (IAGP)
absent stylohyoid muscle  (IAGP)
absent styloid process  (IAGP)
aphagia  (IAGP)
bifid tongue  (IAGP)
cleft palate  (IAGP)
cleft secondary palate  (IAGP)
decreased cardiac output  (IEA)
decreased cardiac stroke volume  (IEA)
decreased food intake  (IEA)
decreased oligodendrocyte progenitor number  (IAGP)
decreased prepulse inhibition  (IEA)
decreased respiratory quotient  (IEA)
decreased rhombomere 3 size  (IAGP)
decreased sensory neuron number  (IAGP)
enlarged gonial bone  (IAGP)
increased oligodendrocyte progenitor number  (IAGP)
increased rhombomere 1 size  (IAGP)
lethality at weaning, complete penetrance  (IAGP)
lethality throughout fetal growth and development  (IAGP)
meteorism  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
no abnormal phenotype detected  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
postnatal growth retardation  (IAGP)
preweaning lethality, complete penetrance  (IEA)
respiratory failure  (IAGP)
small ears  (IAGP)
small malleus processus brevis  (IAGP)
small middle ear ossicles  (IAGP)
References

Additional References at PubMed
PMID:1348361   PMID:1352886   PMID:1358459   PMID:1682814   PMID:7508007   PMID:7626396   PMID:7635047   PMID:7743939   PMID:7903600   PMID:7903601   PMID:7956823   PMID:8102800  
PMID:8268652   PMID:8565828   PMID:8625806   PMID:8806819   PMID:8833244   PMID:8898234   PMID:9053316   PMID:9142993   PMID:9337135   PMID:9367423   PMID:9367425   PMID:9449667  
PMID:9636074   PMID:9806922   PMID:10068641   PMID:10230789   PMID:10349636   PMID:10529419   PMID:10536059   PMID:10625532   PMID:10654602   PMID:10662633   PMID:10789828   PMID:11042159  
PMID:11076861   PMID:11209945   PMID:11217851   PMID:11336508   PMID:11532923   PMID:11566859   PMID:11578867   PMID:11748135   PMID:11857791   PMID:11857792   PMID:12027433   PMID:12086465  
PMID:12367504   PMID:12412013   PMID:12412017   PMID:12466851   PMID:12477932   PMID:12514106   PMID:12676559   PMID:12702665   PMID:12736208   PMID:12810588   PMID:14651926   PMID:14681479  
PMID:14960494   PMID:14975722   PMID:15033486   PMID:15042701   PMID:15326611   PMID:15489334   PMID:15618518   PMID:15634706   PMID:15652707   PMID:15680324   PMID:15680353   PMID:15680361  
PMID:15790971   PMID:15861402   PMID:15936338   PMID:16141072   PMID:16141073   PMID:16221728   PMID:16515781   PMID:16602821   PMID:16651541   PMID:16751105   PMID:16902088   PMID:16971476  
PMID:17113575   PMID:17166916   PMID:17359301   PMID:17586487   PMID:17652354   PMID:17676642   PMID:17687036   PMID:17728342   PMID:17804628   PMID:17897445   PMID:18164701   PMID:18216176  
PMID:18287559   PMID:18321982   PMID:18417536   PMID:18547144   PMID:18787068   PMID:18930042   PMID:19104046   PMID:19168678   PMID:19204410   PMID:19653318   PMID:19655241   PMID:19716816  
PMID:19922872   PMID:20034726   PMID:20059953   PMID:20206242   PMID:20211142   PMID:20501333   PMID:20651846   PMID:20809987   PMID:20932939   PMID:20969845   PMID:21149574   PMID:21245383  
PMID:21267068   PMID:21320481   PMID:21324897   PMID:21497760   PMID:21677750   PMID:21693512   PMID:21873635   PMID:21925604   PMID:21982646   PMID:22093256   PMID:22219351   PMID:22223247  
PMID:22252486   PMID:22701719   PMID:22711520   PMID:22808246   PMID:23041116   PMID:23197710   PMID:23307742   PMID:23408898   PMID:23671666   PMID:23723417   PMID:24010020   PMID:24067355  
PMID:24129174   PMID:24244684   PMID:24357327   PMID:24368733   PMID:24496623   PMID:24952961   PMID:24996922   PMID:25099890   PMID:25640223   PMID:25810521   PMID:25889273   PMID:26303204  
PMID:26496426   PMID:26718736   PMID:26746790   PMID:27287804   PMID:28041967   PMID:28052248   PMID:28188179   PMID:28609438   PMID:28807901   PMID:29031500   PMID:29184513   PMID:30134070  
PMID:30268353   PMID:30630826   PMID:30897080   PMID:31323436   PMID:32325033   PMID:32479258   PMID:32553121   PMID:33315856  


Genomics

Comparative Map Data
Hoxa2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39652,139,397 - 52,141,811 (-)NCBIGRCm39mm39
GRCm39 Ensembl652,139,397 - 52,141,811 (-)Ensembl
GRCm38652,162,417 - 52,164,831 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl652,162,417 - 52,164,831 (-)EnsemblGRCm38mm10GRCm38
MGSCv37652,112,510 - 52,114,830 (-)NCBIGRCm37mm9NCBIm37
MGSCv36652,092,094 - 52,094,414 (-)NCBImm8
Celera652,684,174 - 52,686,494 (-)NCBICelera
Cytogenetic Map6B3NCBI
cM Map625.4NCBI
HOXA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl727,100,354 - 27,102,686 (-)EnsemblGRCh38hg38GRCh38
GRCh38727,100,354 - 27,102,683 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37727,139,973 - 27,142,302 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36727,106,498 - 27,108,919 (-)NCBINCBI36hg18NCBI36
Build 34726,913,213 - 26,915,634NCBI
Celera727,128,910 - 27,131,331 (-)NCBI
Cytogenetic Map7p15.2NCBI
HuRef727,020,564 - 27,022,985 (-)NCBIHuRef
CHM1_1727,139,670 - 27,142,091 (-)NCBICHM1_1
CRA_TCAGchr7v2727,191,126 - 27,193,547 (-)NCBI
Hoxa2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl482,131,329 - 82,133,605 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0482,130,441 - 82,134,846 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera476,153,207 - 76,157,522 (-)NCBICelera
Cytogenetic Map4q24NCBI
Hoxa2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541028,794,878 - 28,798,231 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541028,794,878 - 28,798,231 (-)NCBIChiLan1.0ChiLan1.0
HOXA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1727,344,100 - 27,346,794 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl727,344,469 - 27,346,789 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0727,745,138 - 27,747,129 (-)NCBIMhudiblu_PPA_v0panPan3
HOXA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11440,273,992 - 40,276,975 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1440,274,469 - 40,276,239 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1439,705,487 - 39,708,305 (-)NCBI
ROS_Cfam_1.01440,213,194 - 40,216,016 (-)NCBI
UMICH_Zoey_3.11440,327,306 - 40,330,123 (-)NCBI
UNSW_CanFamBas_1.01440,012,375 - 40,015,186 (-)NCBI
UU_Cfam_GSD_1.01440,370,952 - 40,373,773 (-)NCBI
Hoxa2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_ltri_2NW_02440511884,516,906 - 84,520,094 (-)NCBI
SpeTri2.0NW_0049364783,729,079 - 3,731,353 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HOXA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1845,470,419 - 45,473,347 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11845,470,079 - 45,473,345 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21850,103,242 - 50,106,499 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HOXA2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12131,261,992 - 31,271,071 (+)NCBI
ChlSab1.1 Ensembl2131,266,459 - 31,268,221 (+)Ensembl
Hoxa2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247393,501,671 - 3,504,939 (+)NCBI

Position Markers
Hoxa9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37652,174,170 - 52,175,566UniSTSGRCm37
MGSCv37652,173,711 - 52,174,277UniSTSGRCm37
MGSCv37652,176,430 - 52,177,278UniSTSGRCm37
MGSCv37652,174,279 - 52,175,574UniSTSGRCm37
MGSCv37652,174,406 - 52,175,954UniSTSGRCm37
MGSCv37652,174,722 - 52,174,858UniSTSGRCm37
Celera652,746,362 - 52,746,498UniSTS
Celera652,745,919 - 52,747,214UniSTS
Celera652,746,046 - 52,747,594UniSTS
Celera652,745,351 - 52,745,917UniSTS
Celera652,748,070 - 52,748,918UniSTS
Celera652,745,810 - 52,747,206UniSTS
Cytogenetic Map6B3UniSTS
cM Map626.32UniSTS
cM Map626.32UniSTS
cM Map626.29UniSTS
cM Map626.32UniSTS
cM Map626.32UniSTS
M95599  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38652,162,603 - 52,162,766UniSTSGRCm38
MGSCv37652,112,602 - 52,112,765UniSTSGRCm37
Celera652,684,266 - 52,684,429UniSTS
Cytogenetic Map6B3UniSTS
cM Map626.29UniSTS
Whitehead_YAC6 UniSTS
AI324701  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38652,163,396 - 52,163,479UniSTSGRCm38
MGSCv37652,113,395 - 52,113,478UniSTSGRCm37
Celera652,685,059 - 52,685,142UniSTS
Cytogenetic Map6B3UniSTS
cM Map626.29UniSTS
ECD09887  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38652,164,482 - 52,165,103UniSTSGRCm38
MGSCv37652,114,481 - 52,115,102UniSTSGRCm37
Celera652,686,145 - 52,686,766UniSTS
Cytogenetic Map6B3UniSTS
cM Map626.29UniSTS
REN100339  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38652,164,569 - 52,164,808UniSTSGRCm38
MGSCv37652,114,568 - 52,114,807UniSTSGRCm37
Celera652,686,232 - 52,686,471UniSTS
Cytogenetic Map6B3UniSTS
cM Map626.29UniSTS
REN100338  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38652,164,336 - 52,164,590UniSTSGRCm38
MGSCv37652,114,335 - 52,114,589UniSTSGRCm37
Celera652,685,999 - 52,686,253UniSTS
Cytogenetic Map6B3UniSTS
cM Map626.29UniSTS
ECD00644  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38652,163,387 - 52,164,279UniSTSGRCm38
MGSCv37652,113,386 - 52,114,278UniSTSGRCm37
Celera652,685,050 - 52,685,942UniSTS
Cytogenetic Map6B3UniSTS
cM Map626.29UniSTS
Hoxa2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38652,163,130 - 52,163,280UniSTSGRCm38
MGSCv37652,113,129 - 52,113,279UniSTSGRCm37
Celera652,684,793 - 52,684,943UniSTS
Cytogenetic Map6B3UniSTS
cM Map626.29UniSTS
Hoxa2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38652,161,725 - 52,161,884UniSTSGRCm38
MGSCv37652,111,724 - 52,111,883UniSTSGRCm37
Celera652,683,362 - 52,683,535UniSTS
Cytogenetic Map6B3UniSTS
cM Map626.29UniSTS
Hoxa2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6B3UniSTS
cM Map626.29UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080600000Mouse
27226726Tibmd7_mtibia midshaft diameter 7, 16 week (mouse)61770000053500000Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414873387692Mouse
12904940Edlmmq5_mextensor digitorum longus muscle mass QTL 5 (mouse)61963941153639411Mouse
12904943Tammq4_mtibialis anterior muscle mass QTL 4 (mouse)61963941153639411Mouse
12904952Gmmq4_mgastrocnemius muscle mass QTL 4 (mouse)61963941153639411Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268671322775Mouse
10412107Desp4_mdespair 4 (mouse)Not determined62007289554072895Mouse
14700690Ccs6_mcolon cancer susceptibility 6 (mouse)62380000057800000Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62500000080000000Mouse
4141988Obrq3_mobesity resistance QTL 3 (mouse)Not determined2831405962314181Mouse
4141454Obrq4_mobesity resistance QTL 4 (mouse)Not determined3172656565726677Mouse
12880425V25Dq5_mvitamin D inactive form serum level QTL 5 (mouse)63270000066700000Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3285065078238974Mouse
1300959Lxw2_mlupus BXSB x NZW 2 (mouse)Not determined63389528167895420Mouse
11252142Mom12_mModifier of Min 12 (mouse)63389528167895420Mouse
1300767Aliq4_macute lung injury QTL 4 (mouse)Not determined63629634770296450Mouse
1357539Bsbob3_mBSB obesity 3 (mouse)Not determined63647147170471591Mouse
4141094Hrtr1_mheart rate 1 (mouse)Not determined3676447870764478Mouse
14746995Manh60_mmandible shape 60 (mouse)63722567771225677Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
1301326Trbv4c2_mT cell receptor beta variable 4 (mouse)Not determined64089129671379171Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64160000075600000Mouse
1301266Lmr4_mleishmaniasis resistance 4 (mouse)Not determined64211637376116515Mouse
11040600Lmr4c_mleishmaniasis resistance 4c (mouse)64211637376116515Mouse
11040601Lmr4a_mleishmaniasis resistance 4a (mouse)64211637376116515Mouse
11533915Mts4_mmammary tumor susceptibility 4 (mouse)64211637376116515Mouse
12910785Pwgrq16_mpost-weaning growth rate QTL 16 (mouse)64382681377811523Mouse
12910798Pwgrq5_mpre-weaning growth rate QTL 5 (mouse)64382681377811523Mouse
12910802Pwbwq12_mpost-weaning body weight QTL 12 (mouse)64382681377811523Mouse
12910807Pwbwq11_mpost-weaning body weight QTL 11 (mouse)64382681377811523Mouse
12910809Pwbwq10_mpost-weaning body weight QTL 10 (mouse)64382681377811523Mouse
12910820Ogrq3_moverall growth rate QTL 3 (mouse)64382681377811523Mouse
10043885Cia6c_mcollagen induced arthritis QTL 6c (mouse)Not determined64446587171119467Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
4140983Srilp_msleep response to influenza, light phase (mouse)Not determined4872655675447710Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65117915085179300Mouse
14696807Rbcn2_mrod bipolar cell number 2 (mouse)65121000056210000Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:84
Count of miRNA genes:79
Interacting mature miRNAs:79
Transcripts:ENSMUST00000014848
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_010451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB039184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB039186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB039187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB039188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB039189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB039190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB039191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB039192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB221621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC091106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC117105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC117107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M87801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M93148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M93292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M95599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000014848   ⟹   ENSMUSP00000014848
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl652,162,417 - 52,164,831 (-)Ensembl
RefSeq Acc Id: NM_010451   ⟹   NP_034581
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39652,139,397 - 52,141,811 (-)NCBI
GRCm38652,162,417 - 52,164,831 (-)NCBI
MGSCv37652,112,510 - 52,114,830 (-)RGD
Celera652,684,080 - 52,686,494 (-)NCBI
cM Map6 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_034581   ⟸   NM_010451
- UniProtKB: P31245 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000014848   ⟸   ENSMUST00000014848
Protein Domains
Homeobox

Promoters
RGD ID:6839454
Promoter ID:MM_KWN:45999
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   Lung
Transcripts:OTTMUST00000045381
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36652,114,296 - 52,114,796 (-)MPROMDB
RGD ID:6889720
Promoter ID:EPDNEW_M8311
Type:multiple initiation site
Name:Hoxa2_1
Description:Mus musculus homeobox A2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38652,164,828 - 52,164,888EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:96174 AgrOrtholog
Ensembl Genes ENSMUSG00000014704 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000014848 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000014848 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro Homeobox-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_Antennapedia_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_metazoa UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:15399 UniProtKB/Swiss-Prot
MGD MGI:96174 ENTREZGENE
NCBI Gene 15399 ENTREZGENE
Pfam Homeodomain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Hoxa2 PhenoGen
PRINTS HOMEOBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ANTENNAPEDIA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HOMEOBOX_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt HXA2_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3UYP9_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q149U3 UniProtKB/Swiss-Prot
  Q920T8 UniProtKB/Swiss-Prot