Symbol:
Hoxa2
Name:
homeobox A2
RGD ID:
731539
MGI Page
MGI
Description:
Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in embryonic skeletal system development; muscle structure development; and pharyngeal system development. Acts upstream of or within several processes, including regionalization; regulation of transcription by RNA polymerase II; and rhombomere development. Located in nucleus. Is expressed in several structures, including alimentary system; branchial arch; central nervous system; genitourinary system; and sensory organ. Orthologous to human HOXA2 (homeobox A2).
Type:
protein-coding
RefSeq Status:
REVIEWED
Previously known as:
AI324701; homeo box A2; homeobox protein Hox-1.11; homeobox protein Hox-A2; Hox-1.1; Hox-1.11; HOX1.11; MGC151482; MGC151484
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
HOXA2 (homeobox A2) HGNC
EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):
Hoxa2 (homeobox A2) RGD
RGD
Chinchilla lanigera (long-tailed chinchilla):
Hoxa2 (homeobox A2) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
HOXA2 (homeobox A2) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
HOXA2 (homeobox A2) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Hoxa2 (homeobox A2) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
HOXA2 (homeobox A2) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
HOXA2 (homeobox A2) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Hoxa2 (homeobox A2) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Alliance orthologs 3
Homo sapiens (human):
HOXA2 (homeobox A2)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
hoxa2b (homeobox A2b)
Alliance
DIOPT (Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid|ZFIN)
Drosophila melanogaster (fruit fly):
pb
Alliance
DIOPT (OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):
hoxa2
Alliance
DIOPT (Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Latest Assembly:
GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 6 52,139,389 - 52,141,808 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 6 52,139,397 - 52,141,811 (-) Ensembl GRCm39 Ensembl GRCm38 6 52,162,417 - 52,164,831 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 6 52,162,417 - 52,164,831 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 6 52,112,510 - 52,114,830 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 6 52,092,094 - 52,094,414 (-) NCBI MGSCv36 mm8 Celera 6 52,684,174 - 52,686,494 (-) NCBI Celera Cytogenetic Map 6 B3 NCBI cM Map 6 25.4 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Only show annotations with direct experimental evidence (0 objects hidden)
Hoxa2 Mouse 17alpha-ethynylestradiol increases expression EXP 6480464 Ethinyl Estradiol results in increased expression of HOXA2 mRNA CTD PMID:17942748 Hoxa2 Mouse 17alpha-ethynylestradiol multiple interactions EXP 6480464 [Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of HOXA2 mRNA CTD PMID:17942748 Hoxa2 Mouse 2,3,7,8-tetrachlorodibenzodioxine increases expression EXP 6480464 Tetrachlorodibenzodioxin results in increased expression of HOXA2 mRNA CTD PMID:19933214 and PMID:24058054 Hoxa2 Mouse 2,3,7,8-tetrachlorodibenzodioxine affects expression EXP 6480464 Tetrachlorodibenzodioxin affects the expression of HOXA2 mRNA CTD PMID:21570461 Hoxa2 Mouse 2,3,7,8-tetrachlorodibenzodioxine decreases expression EXP 6480464 Tetrachlorodibenzodioxin results in decreased expression of HOXA2 mRNA CTD PMID:19897914 Hoxa2 Mouse 2,3,7,8-tetrachlorodibenzodioxine multiple interactions EXP 6480464 [Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of HOXA2 mRNA CTD PMID:17942748 Hoxa2 Mouse 4,4'-sulfonyldiphenol increases methylation ISO HOXA2 (Homo sapiens) 6480464 bisphenol S results in increased methylation of HOXA2 gene CTD PMID:31601247 Hoxa2 Mouse acrylamide decreases expression ISO Hoxa2 (Rattus norvegicus) 6480464 Acrylamide results in decreased expression of HOXA2 mRNA CTD PMID:28959563 Hoxa2 Mouse aflatoxin B1 decreases methylation ISO HOXA2 (Homo sapiens) 6480464 Aflatoxin B1 results in decreased methylation of HOXA2 gene CTD PMID:27153756 Hoxa2 Mouse aldehydo-D-glucose increases expression ISO Hoxa2 (Rattus norvegicus) 6480464 Glucose results in increased expression of HOXA2 mRNA CTD PMID:21818840 Hoxa2 Mouse aldehydo-D-glucose multiple interactions EXP 6480464 [lard co-treated with Cholesterol and Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose co-treated with Herbicides] results in decreased expression of HOXA2 mRNA CTD PMID:37567420 Hoxa2 Mouse all-trans-retinoic acid increases expression ISO HOXA2 (Homo sapiens) 6480464 Tretinoin results in increased expression of HOXA2 mRNA CTD PMID:17185360 and PMID:21934132 Hoxa2 Mouse all-trans-retinoic acid multiple interactions EXP 6480464 [mono-(2-ethylhexyl)phthalate co-treated with Tretinoin] results in increased expression of HOXA2 mRNA CTD PMID:36189433 Hoxa2 Mouse Allylamine affects expression ISO Hoxa2 (Rattus norvegicus) 6480464 Allylamine affects the expression of HOXA2 mRNA CTD PMID:15910882 Hoxa2 Mouse ammonium chloride affects expression ISO Hoxa2 (Rattus norvegicus) 6480464 Ammonium Chloride affects the expression of HOXA2 mRNA CTD PMID:16483693 Hoxa2 Mouse arotinoid acid multiple interactions ISO HOXA2 (Homo sapiens) 6480464 [4-(2-(5 more ... CTD PMID:34480604 Hoxa2 Mouse arsenous acid decreases expression ISO HOXA2 (Homo sapiens) 6480464 Arsenic Trioxide results in decreased expression of HOXA2 mRNA CTD PMID:26705709 Hoxa2 Mouse benzo[a]pyrene affects methylation ISO HOXA2 (Homo sapiens) 6480464 Benzo(a)pyrene affects the methylation of HOXA2 exon CTD PMID:27901495 Hoxa2 Mouse beta-lapachone decreases expression ISO HOXA2 (Homo sapiens) 6480464 beta-lapachone results in decreased expression of HOXA2 mRNA CTD PMID:38218311 Hoxa2 Mouse bis(2-chloroethyl) sulfide decreases expression EXP 6480464 Mustard Gas results in decreased expression of HOXA2 mRNA CTD PMID:15674843 Hoxa2 Mouse bis(2-ethylhexyl) phthalate decreases expression ISO HOXA2 (Homo sapiens) 6480464 Diethylhexyl Phthalate results in decreased expression of HOXA2 mRNA CTD PMID:31163220 Hoxa2 Mouse bisphenol A increases expression EXP 6480464 bisphenol A results in increased expression of HOXA2 mRNA CTD PMID:22687993 and PMID:30951980 Hoxa2 Mouse bisphenol A decreases methylation ISO HOXA2 (Homo sapiens) 6480464 bisphenol A results in decreased methylation of HOXA2 gene CTD PMID:31601247 Hoxa2 Mouse bisphenol A multiple interactions ISO Hoxa2 (Rattus norvegicus) 6480464 [bisphenol A co-treated with tributyltin] results in decreased expression of HOXA2 mRNA CTD PMID:31129395 Hoxa2 Mouse bisphenol A affects methylation EXP 6480464 bisphenol A affects the methylation of HOXA2 promoter CTD PMID:27334623 Hoxa2 Mouse bisphenol A decreases expression ISO Hoxa2 (Rattus norvegicus) 6480464 bisphenol A results in decreased expression of HOXA2 mRNA CTD PMID:25181051 Hoxa2 Mouse CGP 52608 multiple interactions ISO HOXA2 (Homo sapiens) 6480464 CGP 52608 promotes the reaction [RORA protein binds to HOXA2 gene] CTD PMID:28238834 Hoxa2 Mouse CHIR 99021 multiple interactions ISO HOXA2 (Homo sapiens) 6480464 [4-(2-(5 more ... CTD PMID:34480604 Hoxa2 Mouse chloroprene decreases expression EXP 6480464 Chloroprene results in decreased expression of HOXA2 mRNA CTD PMID:23125180 Hoxa2 Mouse cisplatin multiple interactions ISO HOXA2 (Homo sapiens) 6480464 [Cisplatin co-treated with jinfukang] results in decreased expression of HOXA2 mRNA CTD PMID:27392435 Hoxa2 Mouse cortisol multiple interactions ISO HOXA2 (Homo sapiens) 6480464 [4-(2-(5 more ... CTD PMID:34480604 Hoxa2 Mouse cytarabine increases expression ISO HOXA2 (Homo sapiens) 6480464 Cytarabine results in increased expression of HOXA2 mRNA CTD PMID:21198554 Hoxa2 Mouse D-glucose increases expression ISO Hoxa2 (Rattus norvegicus) 6480464 Glucose results in increased expression of HOXA2 mRNA CTD PMID:21818840 Hoxa2 Mouse D-glucose multiple interactions EXP 6480464 [lard co-treated with Cholesterol and Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose co-treated with Herbicides] results in decreased expression of HOXA2 mRNA CTD PMID:37567420 Hoxa2 Mouse diarsenic trioxide decreases expression ISO HOXA2 (Homo sapiens) 6480464 Arsenic Trioxide results in decreased expression of HOXA2 mRNA CTD PMID:26705709 Hoxa2 Mouse dieldrin affects methylation EXP 6480464 Dieldrin affects the methylation of HOXA2 gene CTD PMID:38995845 Hoxa2 Mouse dimethylarsinic acid decreases expression ISO Hoxa2 (Rattus norvegicus) 6480464 Cacodylic Acid results in decreased expression of HOXA2 mRNA CTD PMID:16122865 Hoxa2 Mouse flavonoids increases expression ISO Hoxa2 (Rattus norvegicus) 6480464 Flavonoids results in increased expression of HOXA2 mRNA CTD PMID:18035473 Hoxa2 Mouse fonofos increases methylation ISO HOXA2 (Homo sapiens) 6480464 Fonofos results in increased methylation of HOXA2 promoter CTD PMID:22847954 Hoxa2 Mouse fructose multiple interactions EXP 6480464 [lard co-treated with Cholesterol and Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose co-treated with Herbicides] results in decreased expression of HOXA2 mRNA CTD PMID:37567420 Hoxa2 Mouse furan increases expression ISO Hoxa2 (Rattus norvegicus) 6480464 furan results in increased expression of HOXA2 mRNA CTD PMID:27387713 Hoxa2 Mouse furan decreases methylation ISO Hoxa2 (Rattus norvegicus) 6480464 furan results in decreased methylation of HOXA2 gene CTD PMID:27387713 Hoxa2 Mouse genistein increases expression EXP 6480464 Genistein results in increased expression of HOXA2 mRNA CTD PMID:32186404 Hoxa2 Mouse gentamycin increases expression ISO Hoxa2 (Rattus norvegicus) 6480464 Gentamicins results in increased expression of HOXA2 mRNA CTD PMID:33387578 Hoxa2 Mouse glucose increases expression ISO Hoxa2 (Rattus norvegicus) 6480464 Glucose results in increased expression of HOXA2 mRNA CTD PMID:21818840 Hoxa2 Mouse glucose multiple interactions EXP 6480464 [lard co-treated with Cholesterol and Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose co-treated with Herbicides] results in decreased expression of HOXA2 mRNA CTD PMID:37567420 Hoxa2 Mouse herbicide multiple interactions EXP 6480464 [lard co-treated with Cholesterol and Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose co-treated with Herbicides] results in decreased expression of HOXA2 mRNA CTD PMID:37567420 Hoxa2 Mouse L-ascorbic acid multiple interactions EXP 6480464 Ascorbic Acid inhibits the reaction [Valproic Acid results in decreased expression of HOXA2 mRNA] CTD PMID:19655241 Hoxa2 Mouse L-ascorbic acid multiple interactions ISO HOXA2 (Homo sapiens) 6480464 [[Ascorbic Acid co-treated with Chir 99021 co-treated with XAV939 co-treated with BMP4 protein co-treated with FGF1 protein co-treated with WNT3A protein co-treated with HGF protein] co-treated with [INHBA protein binds to INHBA protein]] results in increased expression of HOXA2 mRNA CTD PMID:34480604 Hoxa2 Mouse mono(2-ethylhexyl) phthalate decreases expression ISO HOXA2 (Homo sapiens) 6480464 mono-(2-ethylhexyl)phthalate results in decreased expression of HOXA2 mRNA CTD PMID:36695872 Hoxa2 Mouse mono(2-ethylhexyl) phthalate multiple interactions EXP 6480464 [mono-(2-ethylhexyl)phthalate co-treated with Tretinoin] results in increased expression of HOXA2 mRNA CTD PMID:36189433 Hoxa2 Mouse nickel atom decreases expression ISO HOXA2 (Homo sapiens) 6480464 Nickel results in decreased expression of HOXA2 mRNA CTD PMID:24768652 and PMID:25583101 Hoxa2 Mouse nickel sulfate increases expression ISO HOXA2 (Homo sapiens) 6480464 nickel sulfate results in increased expression of HOXA2 mRNA CTD PMID:22714537 Hoxa2 Mouse parathion increases methylation ISO HOXA2 (Homo sapiens) 6480464 Parathion results in increased methylation of HOXA2 promoter CTD PMID:22847954 Hoxa2 Mouse perfluorooctane-1-sulfonic acid affects expression ISO HOXA2 (Homo sapiens) 6480464 perfluorooctane sulfonic acid affects the expression of HOXA2 mRNA CTD PMID:30738844 Hoxa2 Mouse phenytoin decreases expression EXP 6480464 Phenytoin results in decreased expression of HOXA2 mRNA and Phenytoin results in decreased expression of HOXA2 protein CTD PMID:10789828 Hoxa2 Mouse pregnenolone 16alpha-carbonitrile increases expression EXP 6480464 Pregnenolone Carbonitrile results in increased expression of HOXA2 mRNA CTD PMID:22698814 Hoxa2 Mouse SB 431542 multiple interactions ISO HOXA2 (Homo sapiens) 6480464 [LDN 193189 co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide co-treated with EGF protein co-treated with FGF2 protein] results in increased expression of HOXA2 mRNA CTD PMID:34480604 Hoxa2 Mouse silicon dioxide increases expression ISO HOXA2 (Homo sapiens) 6480464 Silicon Dioxide analog results in increased expression of HOXA2 mRNA CTD PMID:25895662 Hoxa2 Mouse sodium arsenite decreases expression ISO HOXA2 (Homo sapiens) 6480464 sodium arsenite results in decreased expression of HOXA2 mRNA CTD PMID:38568856 Hoxa2 Mouse sodium arsenite decreases expression EXP 6480464 sodium arsenite results in decreased expression of HOXA2 mRNA CTD PMID:37682722 Hoxa2 Mouse terbufos increases methylation ISO HOXA2 (Homo sapiens) 6480464 terbufos results in increased methylation of HOXA2 promoter CTD PMID:22847954 Hoxa2 Mouse thiram decreases expression ISO HOXA2 (Homo sapiens) 6480464 Thiram results in decreased expression of HOXA2 mRNA CTD PMID:38568856 Hoxa2 Mouse titanium dioxide decreases expression EXP 6480464 titanium dioxide results in decreased expression of HOXA2 mRNA CTD PMID:29264374 Hoxa2 Mouse tributylstannane multiple interactions ISO Hoxa2 (Rattus norvegicus) 6480464 [bisphenol A co-treated with tributyltin] results in decreased expression of HOXA2 mRNA CTD PMID:31129395 Hoxa2 Mouse trichloroethene increases expression ISO Hoxa2 (Rattus norvegicus) 6480464 Trichloroethylene results in increased expression of HOXA2 mRNA CTD PMID:33387578 Hoxa2 Mouse triclosan increases expression ISO HOXA2 (Homo sapiens) 6480464 Triclosan results in increased expression of HOXA2 mRNA CTD PMID:30510588 Hoxa2 Mouse troglitazone decreases expression ISO HOXA2 (Homo sapiens) 6480464 troglitazone results in decreased expression of HOXA2 mRNA CTD PMID:19140230 Hoxa2 Mouse valproic acid decreases expression EXP 6480464 Valproic Acid results in decreased expression of HOXA2 mRNA and Valproic Acid results in decreased expression of HOXA2 protein CTD PMID:19655241 Hoxa2 Mouse valproic acid multiple interactions EXP 6480464 Ascorbic Acid inhibits the reaction [Valproic Acid results in decreased expression of HOXA2 mRNA] CTD PMID:19655241 Hoxa2 Mouse valproic acid increases expression EXP 6480464 Valproic Acid results in increased expression of HOXA2 mRNA CTD PMID:24896083 Hoxa2 Mouse XAV939 multiple interactions ISO HOXA2 (Homo sapiens) 6480464 [[Ascorbic Acid co-treated with Chir 99021 co-treated with XAV939 co-treated with BMP4 protein co-treated with FGF1 protein co-treated with WNT3A protein co-treated with HGF protein] co-treated with [INHBA protein binds to INHBA protein]] results in increased expression of HOXA2 mRNA CTD PMID:34480604
Hoxa2 Mouse abnormal auditory brainstem response IEA 5509061 MGI Hoxa2 Mouse abnormal basioccipital bone morphology IAGP 5509061 MGI PMID:7903601 Hoxa2 Mouse abnormal basioccipital bone morphology IAGP 5509061 MGI PMID:7903600 Hoxa2 Mouse abnormal basioccipital bone morphology IAGP 5509061 MGI PMID:10529419 Hoxa2 Mouse abnormal basisphenoid bone morphology IAGP 5509061 MGI PMID:11578867 Hoxa2 Mouse abnormal behavior IAGP 5509061 MGI PMID:11857791 Hoxa2 Mouse abnormal behavior IAGP 5509061 MGI PMID:11857792 Hoxa2 Mouse abnormal brain development IAGP 5509061 MGI PMID:23197710 Hoxa2 Mouse abnormal cartilage development IAGP 5509061 MGI PMID:7903601 Hoxa2 Mouse abnormal cochlear VIII nucleus morphology IAGP 5509061 MGI PMID:23408898 Hoxa2 Mouse abnormal craniofacial bone morphology IAGP 5509061 MGI PMID:16221728 Hoxa2 Mouse abnormal craniofacial morphology IAGP 5509061 MGI PMID:11857791 Hoxa2 Mouse abnormal craniofacial morphology IAGP 5509061 MGI PMID:11857792 Hoxa2 Mouse abnormal cranium morphology IAGP 5509061 MGI PMID:10529419 Hoxa2 Mouse abnormal ear morphology IAGP 5509061 MGI PMID:11857791 Hoxa2 Mouse abnormal ear morphology IAGP 5509061 MGI PMID:11857792 Hoxa2 Mouse abnormal external auditory canal morphology IAGP 5509061 MGI PMID:8565828 Hoxa2 Mouse abnormal facial motor nucleus morphology IAGP 5509061 MGI PMID:7903601 Hoxa2 Mouse abnormal facial nerve morphology IAGP 5509061 MGI PMID:7903601 Hoxa2 Mouse abnormal facial nerve morphology IAGP 5509061 MGI PMID:11578867 Hoxa2 Mouse abnormal facial nerve morphology IAGP 5509061 MGI PMID:7903600 Hoxa2 Mouse abnormal gait IEA 5509061 MGI Hoxa2 Mouse abnormal glossopharyngeal nerve morphology IAGP 5509061 MGI PMID:7903600 Hoxa2 Mouse abnormal gonial bone morphology IAGP 5509061 MGI PMID:16221728 Hoxa2 Mouse abnormal gonial bone morphology IAGP 5509061 MGI PMID:11578867 Hoxa2 Mouse abnormal hindbrain morphology IAGP 5509061 MGI PMID:10529419 Hoxa2 Mouse abnormal hyoid bone lesser horn morphology IAGP 5509061 MGI PMID:11578867 Hoxa2 Mouse abnormal hyoid bone lesser horn morphology IAGP 5509061 MGI PMID:12412013 Hoxa2 Mouse abnormal hyoid bone morphology IAGP 5509061 MGI PMID:7903600 Hoxa2 Mouse abnormal hyoid bone morphology IAGP 5509061 MGI PMID:16221728 Hoxa2 Mouse abnormal incudostapedial joint morphology IAGP 5509061 MGI PMID:11578867 Hoxa2 Mouse abnormal incus morphology IAGP 5509061 MGI PMID:16221728 Hoxa2 Mouse abnormal incus morphology IAGP 5509061 MGI PMID:15861402 Hoxa2 Mouse abnormal incus morphology IAGP 5509061 MGI PMID:7903601 Hoxa2 Mouse abnormal malleus morphology IAGP 5509061 MGI PMID:16221728 Hoxa2 Mouse abnormal malleus morphology IAGP 5509061 MGI PMID:11578867 Hoxa2 Mouse abnormal malleus morphology IAGP 5509061 MGI PMID:15861402 Hoxa2 Mouse abnormal malleus morphology IAGP 5509061 MGI PMID:7903601 Hoxa2 Mouse abnormal Meckel's cartilage morphology IAGP 5509061 MGI PMID:16221728 Hoxa2 Mouse abnormal Meckel's cartilage morphology IAGP 5509061 MGI PMID:7903600 Hoxa2 Mouse abnormal Meckel's cartilage morphology IAGP 5509061 MGI PMID:7903601 Hoxa2 Mouse abnormal middle ear morphology IAGP 5509061 MGI PMID:16221728 Hoxa2 Mouse abnormal middle ear ossicle morphology IAGP 5509061 MGI PMID:10529419 Hoxa2 Mouse abnormal middle ear ossicle morphology IAGP 5509061 MGI PMID:11578867 Hoxa2 Mouse abnormal middle ear ossicle morphology IAGP 5509061 MGI PMID:7903600 Hoxa2 Mouse abnormal nervous system morphology IAGP 5509061 MGI PMID:11857791 Hoxa2 Mouse abnormal nervous system morphology IAGP 5509061 MGI PMID:11857792 Hoxa2 Mouse abnormal neuron differentiation IAGP 5509061 MGI PMID:10230789 Hoxa2 Mouse abnormal otic capsule morphology IAGP 5509061 MGI PMID:7903601 Hoxa2 Mouse abnormal otic capsule morphology IAGP 5509061 MGI PMID:15861402 Hoxa2 Mouse abnormal outer ear morphology IAGP 5509061 MGI PMID:7903600 Hoxa2 Mouse abnormal outer ear morphology IAGP 5509061 MGI PMID:11578867 Hoxa2 Mouse abnormal palatal shelf fusion at midline IAGP 5509061 MGI PMID:19653318 Hoxa2 Mouse abnormal retrotympanic process morphology IAGP 5509061 MGI PMID:7903601 Hoxa2 Mouse abnormal retrotympanic process morphology IAGP 5509061 MGI PMID:11578867 Hoxa2 Mouse abnormal rhombomere 2 morphology IAGP 5509061 MGI PMID:10230789 Hoxa2 Mouse abnormal rhombomere 2 morphology IAGP 5509061 MGI PMID:12412013 Hoxa2 Mouse abnormal rhombomere 3 morphology IAGP 5509061 MGI PMID:10230789 Hoxa2 Mouse abnormal rhombomere 3 morphology IAGP 5509061 MGI PMID:12412013 Hoxa2 Mouse abnormal rhombomere boundary morphology IAGP 5509061 MGI PMID:11578867 Hoxa2 Mouse abnormal rhombomere morphology IAGP 5509061 MGI PMID:10230789 Hoxa2 Mouse abnormal rhombomere morphology IAGP 5509061 MGI PMID:12412013 Hoxa2 Mouse abnormal scala vestibuli morphology IAGP 5509061 MGI PMID:7903601 Hoxa2 Mouse abnormal secondary palate development IAGP 5509061 MGI PMID:19653318 Hoxa2 Mouse abnormal secondary palate development IAGP 5509061 MGI PMID:29218017 Hoxa2 Mouse abnormal skeleton development IAGP 5509061 MGI PMID:7903601 Hoxa2 Mouse abnormal skeleton morphology IAGP 5509061 MGI PMID:11857791 Hoxa2 Mouse abnormal skeleton morphology IAGP 5509061 MGI PMID:11857792 Hoxa2 Mouse abnormal snout morphology IEA 5509061 MGI Hoxa2 Mouse abnormal stapedial artery morphology IAGP 5509061 MGI PMID:11578867 Hoxa2 Mouse abnormal stapes morphology IAGP 5509061 MGI PMID:7903601 Hoxa2 Mouse abnormal stapes morphology IAGP 5509061 MGI PMID:16221728 Hoxa2 Mouse abnormal stapes morphology IAGP 5509061 MGI PMID:12412013 Hoxa2 Mouse abnormal stapes morphology IAGP 5509061 MGI PMID:11578867 Hoxa2 Mouse abnormal styloglossus muscle morphology IAGP 5509061 MGI PMID:10529419 Hoxa2 Mouse abnormal styloid process morphology IAGP 5509061 MGI PMID:7903600 Hoxa2 Mouse abnormal styloid process morphology IAGP 5509061 MGI PMID:16221728 Hoxa2 Mouse abnormal styloid process morphology IAGP 5509061 MGI PMID:12412013 Hoxa2 Mouse abnormal styloid process morphology IAGP 5509061 MGI PMID:11578867 Hoxa2 Mouse abnormal suckling behavior IAGP 5509061 MGI PMID:7903601 Hoxa2 Mouse abnormal suckling behavior IAGP 5509061 MGI PMID:10529419 Hoxa2 Mouse abnormal temporal bone morphology IAGP 5509061 MGI PMID:7903601 Hoxa2 Mouse abnormal temporal bone morphology IAGP 5509061 MGI PMID:7903600 Hoxa2 Mouse abnormal temporal bone squamous part morphology IAGP 5509061 MGI PMID:7903601 Hoxa2 Mouse abnormal temporal bone squamous part morphology IAGP 5509061 MGI PMID:11578867 Hoxa2 Mouse abnormal temporal bone tympanic part morphology IAGP 5509061 MGI PMID:7903601 Hoxa2 Mouse abnormal tensor tympani muscle morphology IAGP 5509061 MGI PMID:7903601 Hoxa2 Mouse abnormal tongue muscle morphology IAGP 5509061 MGI PMID:10529419 Hoxa2 Mouse abnormal tongue muscle morphology IAGP 5509061 MGI PMID:11578867 Hoxa2 Mouse abnormal tubotympanic recess morphology IAGP 5509061 MGI PMID:7903600 Hoxa2 Mouse abnormal tympanic cavity morphology IAGP 5509061 MGI PMID:7903601 Hoxa2 Mouse abnormal tympanic membrane morphology IAGP 5509061 MGI PMID:7903601 Hoxa2 Mouse abnormal tympanic ring morphology IAGP 5509061 MGI PMID:7903600 Hoxa2 Mouse abnormal tympanic ring morphology IAGP 5509061 MGI PMID:11578867 Hoxa2 Mouse abnormal vagus nerve morphology IAGP 5509061 MGI PMID:7903600 Hoxa2 Mouse absent hyoid bone lesser horns IAGP 5509061 MGI PMID:16221728 Hoxa2 Mouse absent hyoid bone lesser horns IAGP 5509061 MGI PMID:7903601 Hoxa2 Mouse absent malleus processus brevis IAGP 5509061 MGI PMID:7903601 Hoxa2 Mouse absent outer ear IAGP 5509061 MGI PMID:7903601 Hoxa2 Mouse absent outer ear IAGP 5509061 MGI PMID:11578867 Hoxa2 Mouse absent outer ear IAGP 5509061 MGI PMID:10529419 Hoxa2 Mouse absent outer ear IAGP 5509061 MGI PMID:16221728 Hoxa2 Mouse absent oval window IAGP 5509061 MGI PMID:11578867 Hoxa2 Mouse absent stapedial artery IAGP 5509061 MGI PMID:11578867 Hoxa2 Mouse absent stapedius muscle IAGP 5509061 MGI PMID:7903601 Hoxa2 Mouse absent stapes IAGP 5509061 MGI PMID:16221728 Hoxa2 Mouse absent stapes IAGP 5509061 MGI PMID:11578867 Hoxa2 Mouse absent stapes IAGP 5509061 MGI PMID:7903600 Hoxa2 Mouse absent stapes IAGP 5509061 MGI PMID:10529419 Hoxa2 Mouse absent stylohyoid muscle IAGP 5509061 MGI PMID:7903601 Hoxa2 Mouse absent styloid process IAGP 5509061 MGI PMID:16221728 Hoxa2 Mouse absent styloid process IAGP 5509061 MGI PMID:11578867 Hoxa2 Mouse aphagia IAGP 5509061 MGI PMID:11578867 Hoxa2 Mouse bifid tongue IAGP 5509061 MGI PMID:7903601 Hoxa2 Mouse bifid tongue IAGP 5509061 MGI PMID:11578867 Hoxa2 Mouse cleft palate IAGP 5509061 MGI PMID:11578867 Hoxa2 Mouse cleft secondary palate IAGP 5509061 MGI PMID:7903601 Hoxa2 Mouse cleft secondary palate IAGP 5509061 MGI PMID:7903600 Hoxa2 Mouse cleft secondary palate IAGP 5509061 MGI PMID:10529419 Hoxa2 Mouse decreased circulating creatinine level IEA 5509061 MGI Hoxa2 Mouse decreased oligodendrocyte progenitor number IAGP 5509061 MGI PMID:23197710 Hoxa2 Mouse decreased prepulse inhibition IEA 5509061 MGI Hoxa2 Mouse decreased respiratory quotient IEA 5509061 MGI Hoxa2 Mouse decreased rhombomere 3 size IAGP 5509061 MGI PMID:11578867 Hoxa2 Mouse decreased sensory neuron number IAGP 5509061 MGI PMID:14960494 Hoxa2 Mouse duplicated tympanic ring IAGP 5509061 MGI PMID:16221728 Hoxa2 Mouse duplicated tympanic ring IAGP 5509061 MGI PMID:8565828 Hoxa2 Mouse enlarged gonial bone IAGP 5509061 MGI PMID:7903601 Hoxa2 Mouse failure of palatal shelf elevation IAGP 5509061 MGI PMID:19653318 Hoxa2 Mouse failure of palatal shelf elevation IAGP 5509061 MGI PMID:29218017 Hoxa2 Mouse improved glucose tolerance IEA 5509061 MGI Hoxa2 Mouse increased oligodendrocyte progenitor number IAGP 5509061 MGI PMID:23197710 Hoxa2 Mouse increased rhombomere 1 size IAGP 5509061 MGI PMID:10230789 Hoxa2 Mouse lethality at weaning, complete penetrance IAGP 5509061 MGI PMID:12412013 Hoxa2 Mouse lethality throughout fetal growth and development IAGP 5509061 MGI PMID:23408898 Hoxa2 Mouse meteorism IAGP 5509061 MGI PMID:7903600 Hoxa2 Mouse neonatal lethality, complete penetrance IAGP 5509061 MGI PMID:7903601 Hoxa2 Mouse neonatal lethality, complete penetrance IAGP 5509061 MGI PMID:11857792 Hoxa2 Mouse neonatal lethality, complete penetrance IAGP 5509061 MGI PMID:11857791 Hoxa2 Mouse neonatal lethality, complete penetrance IAGP 5509061 MGI PMID:11578867 Hoxa2 Mouse neonatal lethality, complete penetrance IAGP 5509061 MGI PMID:7903600 Hoxa2 Mouse neonatal lethality, complete penetrance IAGP 5509061 MGI PMID:10230789 Hoxa2 Mouse neonatal lethality, complete penetrance IAGP 5509061 MGI PMID:10529419 Hoxa2 Mouse no abnormal phenotype detected IAGP 5509061 MGI PMID:10529419 Hoxa2 Mouse no abnormal phenotype detected IAGP 5509061 MGI PMID:16221728 Hoxa2 Mouse no abnormal phenotype detected IAGP 5509061 MGI PMID:12412013 Hoxa2 Mouse no abnormal phenotype detected IAGP 5509061 MGI PMID:11857791 Hoxa2 Mouse palatal shelves fail to meet at midline IAGP 5509061 MGI PMID:19653318 Hoxa2 Mouse perinatal lethality, complete penetrance IAGP 5509061 MGI PMID:16221728 Hoxa2 Mouse persistence of medial edge epithelium during palatal shelf fusion IAGP 5509061 MGI PMID:29218017 Hoxa2 Mouse postnatal growth retardation IAGP 5509061 MGI PMID:12412013 Hoxa2 Mouse preweaning lethality, complete penetrance IEA 5509061 MGI Hoxa2 Mouse respiratory failure IAGP 5509061 MGI PMID:10529419 Hoxa2 Mouse small ears IAGP 5509061 MGI PMID:10529419 Hoxa2 Mouse small ears IAGP 5509061 MGI PMID:16221728 Hoxa2 Mouse small malleus processus brevis IAGP 5509061 MGI PMID:11578867 Hoxa2 Mouse small middle ear ossicles IAGP 5509061 MGI PMID:10529419
17alpha-ethynylestradiol (EXP) 2,3,7,8-tetrachlorodibenzodioxine (EXP) 4,4'-sulfonyldiphenol (ISO) acrylamide (ISO) aflatoxin B1 (ISO) aldehydo-D-glucose (EXP,ISO) all-trans-retinoic acid (EXP,ISO) Allylamine (ISO) ammonium chloride (ISO) arotinoid acid (ISO) arsenous acid (ISO) benzo[a]pyrene (ISO) beta-lapachone (ISO) bis(2-chloroethyl) sulfide (EXP) bis(2-ethylhexyl) phthalate (ISO) bisphenol A (EXP,ISO) CGP 52608 (ISO) CHIR 99021 (ISO) chloroprene (EXP) cisplatin (ISO) cortisol (ISO) cytarabine (ISO) D-glucose (EXP,ISO) diarsenic trioxide (ISO) dieldrin (EXP) dimethylarsinic acid (ISO) flavonoids (ISO) fonofos (ISO) fructose (EXP) furan (ISO) genistein (EXP) gentamycin (ISO) glucose (EXP,ISO) herbicide (EXP) L-ascorbic acid (EXP,ISO) mono(2-ethylhexyl) phthalate (EXP,ISO) nickel atom (ISO) nickel sulfate (ISO) parathion (ISO) perfluorooctane-1-sulfonic acid (ISO) phenytoin (EXP) pregnenolone 16alpha-carbonitrile (EXP) SB 431542 (ISO) silicon dioxide (ISO) sodium arsenite (EXP,ISO) terbufos (ISO) thiram (ISO) titanium dioxide (EXP) tributylstannane (ISO) trichloroethene (ISO) triclosan (ISO) troglitazone (ISO) valproic acid (EXP) XAV939 (ISO)
Hoxa2 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 6 52,139,389 - 52,141,808 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 6 52,139,397 - 52,141,811 (-) Ensembl GRCm39 Ensembl GRCm38 6 52,162,417 - 52,164,831 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 6 52,162,417 - 52,164,831 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 6 52,112,510 - 52,114,830 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 6 52,092,094 - 52,094,414 (-) NCBI MGSCv36 mm8 Celera 6 52,684,174 - 52,686,494 (-) NCBI Celera Cytogenetic Map 6 B3 NCBI cM Map 6 25.4 NCBI
HOXA2 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 7 27,100,354 - 27,102,683 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 7 27,100,354 - 27,102,686 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 7 27,139,973 - 27,142,302 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 7 27,106,498 - 27,108,919 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 7 26,913,213 - 26,915,634 NCBI Celera 7 27,128,910 - 27,131,331 (-) NCBI Celera Cytogenetic Map 7 p15.2 NCBI HuRef 7 27,020,564 - 27,022,985 (-) NCBI HuRef CHM1_1 7 27,139,670 - 27,142,091 (-) NCBI CHM1_1 T2T-CHM13v2.0 7 27,236,253 - 27,238,582 (-) NCBI T2T-CHM13v2.0 CRA_TCAGchr7v2 7 27,191,126 - 27,193,547 (-) NCBI
Hoxa2 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 4 82,593,389 - 82,597,589 (-) NCBI GRCr8 mRatBN7.2 4 81,262,668 - 81,266,970 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 4 81,262,768 - 81,265,044 (-) Ensembl mRatBN7.2 Ensembl Rnor_6.0 4 82,130,441 - 82,134,846 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 4 82,131,329 - 82,133,605 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Celera 4 76,153,207 - 76,157,522 (-) NCBI Celera Cytogenetic Map 4 q24 NCBI
Hoxa2 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955410 28,794,878 - 28,798,231 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955410 28,794,878 - 28,798,231 (-) NCBI ChiLan1.0 ChiLan1.0
HOXA2 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 6 31,929,398 - 31,933,844 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 7 80,250,959 - 80,256,546 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 7 27,745,138 - 27,747,129 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 7 27,344,100 - 27,346,794 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 7 27,344,469 - 27,346,789 (-) Ensembl panpan1.1 panPan2
HOXA2 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 14 40,273,992 - 40,276,975 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 14 40,274,469 - 40,276,239 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 14 39,705,487 - 39,708,305 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 14 40,213,194 - 40,216,016 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 14 40,213,230 - 40,215,000 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 14 40,327,306 - 40,330,123 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 14 40,012,375 - 40,015,186 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 14 40,370,952 - 40,373,773 (-) NCBI UU_Cfam_GSD_1.0
Hoxa2 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405118 84,516,906 - 84,520,094 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936478 3,729,107 - 3,730,870 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936478 3,729,079 - 3,731,353 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
HOXA2 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 18 45,470,862 - 45,473,876 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 18 45,470,079 - 45,473,345 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 18 50,103,242 - 50,106,499 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
HOXA2 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 21 31,261,992 - 31,271,071 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 21 31,266,459 - 31,268,221 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666042 73,462,800 - 73,471,020 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Hoxa2
.
Predicted Target Of
Count of predictions: 84 Count of miRNA genes: 79 Interacting mature miRNAs: 79 Transcripts: ENSMUST00000014848 Prediction methods: Miranda, Rnahybrid Result types: miRGate_prediction
4142271 Egq8_m early growth QTL 8 (mouse) Not determined 4503823 96633110 Mouse 1301266 Lmr4_m leishmaniasis resistance 4 (mouse) Not determined 6 42093358 76093500 Mouse 12910785 Pwgrq16_m post-weaning growth rate QTL 16 (mouse) 6 43803747 77788506 Mouse 11252142 Mom12_m Modifier of Min 12 (mouse) 6 33872261 67872400 Mouse 14696807 Rbcn2_m rod bipolar cell number 2 (mouse) 6 51186980 56186985 Mouse 4140983 Srilp_m sleep response to influenza, light phase (mouse) Not determined 48703490 75424693 Mouse 12910798 Pwgrq5_m pre-weaning growth rate QTL 5 (mouse) 6 43803747 77788506 Mouse 1300767 Aliq4_m acute lung injury QTL 4 (mouse) Not determined 6 36273332 70273435 Mouse 4142259 Tabw2_m tally ho associated body weight 2 (mouse) Not determined 46912919 136400690 Mouse 25314319 Histh6_m histamine hypersensitivity 6 (mouse) 6 48696934 125336963 Mouse 4142126 W3q3_m weight 3 weeks QTL 3 (mouse) Not determined 4503823 96633110 Mouse 14746995 Manh60_m mandible shape 60 (mouse) 6 37202662 71202662 Mouse 12910807 Pwbwq11_m post-weaning body weight QTL 11 (mouse) 6 43803747 77788506 Mouse 25314320 Histh5_m histamine hypersensitivity 5 (mouse) 6 48696934 148351498 Mouse 1301254 Skts11_m skin tumor susceptibility 11 (mouse) Not determined 6 51156134 85156284 Mouse 1357442 Dbts1_m diabetes 1 (mouse) Not determined 6 18234147 73364675 Mouse 12910802 Pwbwq12_m post-weaning body weight QTL 12 (mouse) 6 43803747 77788506 Mouse 4141094 Hrtr1_m heart rate 1 (mouse) Not determined 36741463 70741463 Mouse 1300618 Pgia19_m proteoglycan induced arthritis 19 (mouse) Not determined 6 45290993 87403016 Mouse 4141988 Obrq3_m obesity resistance QTL 3 (mouse) Not determined 28290993 62291115 Mouse 12910809 Pwbwq10_m post-weaning body weight QTL 10 (mouse) 6 43803747 77788506 Mouse 12910820 Ogrq3_m overall growth rate QTL 3 (mouse) 6 43803747 77788506 Mouse 26884414 Bzwq12_m bi-zygomatic width QTL 12, 16 week (mouse) 6 3400000 139076998 Mouse 4142361 W10q11_m weight 10 weeks QTL 11 (mouse) Not determined 4503823 96633110 Mouse 4142232 W6q4_m weight 6 weeks QTL 4 (mouse) Not determined 4503823 96633110 Mouse 12904940 Edlmmq5_m extensor digitorum longus muscle mass QTL 5 (mouse) 6 19616346 53616346 Mouse 12904943 Tammq4_m tibialis anterior muscle mass QTL 4 (mouse) 6 19616346 53616346 Mouse 10412213 Sxbq2_m SGC/Knj cross B6 QTL 2 (mouse) Not determined 6 19912685 71299759 Mouse 4141454 Obrq4_m obesity resistance QTL 4 (mouse) Not determined 31703499 65703611 Mouse 12904952 Gmmq4_m gastrocnemius muscle mass QTL 4 (mouse) 6 19616346 53616346 Mouse 13208564 Bmiq7_m body mass index QTL 7 (mouse) 6 24999999 79976983 Mouse 26884441 Sklq3_m skull length QTL 3, 5 week (mouse) 6 7600000 80576983 Mouse 1300959 Lxw2_m lupus BXSB x NZW 2 (mouse) Not determined 6 33872261 67872400 Mouse 10412107 Desp4_m despair 4 (mouse) Not determined 6 20049830 54049830 Mouse 1301962 Eila2_m ethanol induced locomotor activity 2 (mouse) Not determined 6 48703490 125333748 Mouse 1301326 Trbv4c2_m T cell receptor beta variable 4 (mouse) Not determined 6 40868230 71356155 Mouse 1300556 Cia6_m collagen induced arthritis QTL 6 (mouse) Not determined 6 4464884 87403016 Mouse 1558984 Cplaq9_m circadian period of locomotor activity 9 (mouse) Not determined 6 38646560 92584431 Mouse 10412157 Fl1n_m fatty liver 1 in NSY (mouse) Not determined 6 45290993 128811995 Mouse 25440480 Moaq2_m modifier of alien QTL 2 (mouse) 6 3050001 117476961 Mouse 1357683 Igf1sl1_m IGF-1 serum levels 1 (mouse) Not determined 6 52138693 116132228 Mouse 4141782 Mrdq5_m modifier of retinal degeneration QTL 5 (mouse) Not determined 32827585 78215957 Mouse 12880424 V25Dq4_m vitamin D inactive form serum level QTL 4 (mouse) 6 41576985 75576985 Mouse 12880425 V25Dq5_m vitamin D inactive form serum level QTL 5 (mouse) 6 32676980 66676980 Mouse 11040600 Lmr4c_m leishmaniasis resistance 4c (mouse) 6 42093358 76093500 Mouse 11040601 Lmr4a_m leishmaniasis resistance 4a (mouse) 6 42093358 76093500 Mouse 14700690 Ccs6_m colon cancer susceptibility 6 (mouse) 6 23776934 57776934 Mouse 11533915 Mts4_m mammary tumor susceptibility 4 (mouse) 6 42093358 76093500 Mouse 10043885 Cia6c_m collagen induced arthritis QTL 6c (mouse) Not determined 6 44442805 71096451 Mouse 1357539 Bsbob3_m BSB obesity 3 (mouse) Not determined 6 36448456 70448576 Mouse 27226726 Tibmd7_m tibia midshaft diameter 7, 16 week (mouse) 6 17699999 53476985 Mouse
Hoxa9
Mouse Assembly Chr Position (strand) Source JBrowse MGSCv37 6 52,174,170 - 52,175,566 UniSTS GRCm37 MGSCv37 6 52,173,711 - 52,174,277 UniSTS GRCm37 MGSCv37 6 52,176,430 - 52,177,278 UniSTS GRCm37 MGSCv37 6 52,174,279 - 52,175,574 UniSTS GRCm37 MGSCv37 6 52,174,406 - 52,175,954 UniSTS GRCm37 MGSCv37 6 52,174,722 - 52,174,858 UniSTS GRCm37 Celera 6 52,746,362 - 52,746,498 UniSTS Celera 6 52,745,919 - 52,747,214 UniSTS Celera 6 52,746,046 - 52,747,594 UniSTS Celera 6 52,745,351 - 52,745,917 UniSTS Celera 6 52,748,070 - 52,748,918 UniSTS Celera 6 52,745,810 - 52,747,206 UniSTS Cytogenetic Map 6 B3 UniSTS cM Map 6 26.32 UniSTS cM Map 6 26.32 UniSTS cM Map 6 26.29 UniSTS cM Map 6 26.32 UniSTS cM Map 6 26.32 UniSTS
M95599
Mouse Assembly Chr Position (strand) Source JBrowse GRCm38 6 52,162,603 - 52,162,766 UniSTS GRCm38 MGSCv37 6 52,112,602 - 52,112,765 UniSTS GRCm37 Celera 6 52,684,266 - 52,684,429 UniSTS Cytogenetic Map 6 B3 UniSTS cM Map 6 26.29 UniSTS Whitehead_YAC 6 UniSTS
AI324701
Mouse Assembly Chr Position (strand) Source JBrowse GRCm38 6 52,163,396 - 52,163,479 UniSTS GRCm38 MGSCv37 6 52,113,395 - 52,113,478 UniSTS GRCm37 Celera 6 52,685,059 - 52,685,142 UniSTS Cytogenetic Map 6 B3 UniSTS cM Map 6 26.29 UniSTS
ECD09887
Mouse Assembly Chr Position (strand) Source JBrowse GRCm38 6 52,164,482 - 52,165,103 UniSTS GRCm38 MGSCv37 6 52,114,481 - 52,115,102 UniSTS GRCm37 Celera 6 52,686,145 - 52,686,766 UniSTS Cytogenetic Map 6 B3 UniSTS cM Map 6 26.29 UniSTS
REN100339
Mouse Assembly Chr Position (strand) Source JBrowse GRCm38 6 52,164,569 - 52,164,808 UniSTS GRCm38 MGSCv37 6 52,114,568 - 52,114,807 UniSTS GRCm37 Celera 6 52,686,232 - 52,686,471 UniSTS Cytogenetic Map 6 B3 UniSTS cM Map 6 26.29 UniSTS
REN100338
Mouse Assembly Chr Position (strand) Source JBrowse GRCm38 6 52,164,336 - 52,164,590 UniSTS GRCm38 MGSCv37 6 52,114,335 - 52,114,589 UniSTS GRCm37 Celera 6 52,685,999 - 52,686,253 UniSTS Cytogenetic Map 6 B3 UniSTS cM Map 6 26.29 UniSTS
ECD00644
Mouse Assembly Chr Position (strand) Source JBrowse GRCm38 6 52,163,387 - 52,164,279 UniSTS GRCm38 MGSCv37 6 52,113,386 - 52,114,278 UniSTS GRCm37 Celera 6 52,685,050 - 52,685,942 UniSTS Cytogenetic Map 6 B3 UniSTS cM Map 6 26.29 UniSTS
Hoxa2
Mouse Assembly Chr Position (strand) Source JBrowse GRCm38 6 52,163,130 - 52,163,280 UniSTS GRCm38 MGSCv37 6 52,113,129 - 52,113,279 UniSTS GRCm37 Celera 6 52,684,793 - 52,684,943 UniSTS Cytogenetic Map 6 B3 UniSTS cM Map 6 26.29 UniSTS
Hoxa2
Mouse Assembly Chr Position (strand) Source JBrowse GRCm38 6 52,161,725 - 52,161,884 UniSTS GRCm38 MGSCv37 6 52,111,724 - 52,111,883 UniSTS GRCm37 Celera 6 52,683,362 - 52,683,535 UniSTS Cytogenetic Map 6 B3 UniSTS cM Map 6 26.29 UniSTS
Hoxa2
Mouse Assembly Chr Position (strand) Source JBrowse Cytogenetic Map 6 B3 UniSTS cM Map 6 26.29 UniSTS
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSMUST00000014848 ⟹ ENSMUSP00000014848
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 6 52,139,397 - 52,141,811 (-) Ensembl GRCm38.p6 Ensembl 6 52,162,417 - 52,164,831 (-) Ensembl
RefSeq Acc Id:
NM_010451 ⟹ NP_034581
RefSeq Status:
REVIEWED
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 6 52,139,389 - 52,141,808 (-) NCBI GRCm38 6 52,162,417 - 52,164,831 (-) NCBI MGSCv37 6 52,112,510 - 52,114,830 (-) RGD Celera 6 52,684,080 - 52,686,494 (-) NCBI cM Map 6 ENTREZGENE
Sequence:
AATAGTTTAATAGTAGCGCGGTCCCCATACGGCTGTAATCAGTGAATTAGAAAAAAAACACCCCAGCAGCGATCTTCTATGATAGATTTTTTTTTCCTTCGCGCTCGCCTTTTTCCTGGGCCTTGCCC
hide sequence
RefSeq Acc Id:
NP_034581 ⟸ NM_010451
- UniProtKB:
Q149U3 (UniProtKB/Swiss-Prot), Q920T8 (UniProtKB/Swiss-Prot), P31245 (UniProtKB/Swiss-Prot), Q3UYP9 (UniProtKB/TrEMBL)
- Sequence:
MNYEFEREIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLNPGSHPRHGAGVGGRPKSSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTALPPAAASTGPACLGHKES
hide sequence
Ensembl Acc Id:
ENSMUSP00000014848 ⟸ ENSMUST00000014848
RGD ID: 6839454 Promoter ID: MM_KWN:45999 Type: CpG-Island SO ACC ID: SO:0000170 Source: MPROMDB Tissues & Cell Lines: 3T3L1_Day1, 3T3L1_Day2, Lung Transcripts: OTTMUST00000045381 Position: Mouse Assembly Chr Position (strand) Source MGSCv36 6 52,114,296 - 52,114,796 (-) MPROMDB
RGD ID: 6889720 Promoter ID: EPDNEW_M8311 Type: multiple initiation site Name: Hoxa2_1 Description: Mus musculus homeobox A2 , mRNA. SO ACC ID: SO:0000170 Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ ) Experiment Methods: Single-end sequencing. Position: Mouse Assembly Chr Position (strand) Source GRCm38 6 52,164,828 - 52,164,888 EPDNEW
