Rbcn2_m QTL Report (Mus musculus) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: Rbcn2_m (rod bipolar cell number 2 (mouse)) Mus musculus

Symbol: Rbcn2_m
Name: rod bipolar cell number 2 (mouse)
RGD ID: 14696807
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm39651,186,980 - 56,186,985MOUSEQTLGRCm39
GRCm38651,210,000 - 56,210,000MOUSEQTLGRCm38
cM Map6syntenicMOUSEQTL
Cross Type: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



References

References - curated
# Reference Title Reference Citation
1. Mouse Genome Database (MGD) Mouse Genome Database (MGD)
Additional References at PubMed
PMID:29867309  


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
10004678Gm38821predicted gene, 3882165119993751257552Mouse
1608325Mir148amicroRNA 148a65124679251246890Mouse
401841482LOC132411437STARR-positive B cell enhancer mm9_chr6:51220893-5122119465124787451248175Mouse
9603953Gm32479predicted gene, 3247965126239451285796Mouse
401839633LOC132411438STARR-positive B cell enhancer ABC_E643265126471551265016Mouse
401837561LOC132411439STARR-positive B cell enhancer mm9_chr6:51312578-5131287965133955951339860Mouse
1614636Gm6559predicted gene 655965135669051369771Mouse
401838817LOC132411440STARR-positive B cell enhancer mm9_chr6:51333989-5133428965136097051361270Mouse
401706592LOC131371766STARR-seq mESC enhancer starr_1587065137714051381376Mouse
1317093Nfe2l3nuclear factor, erythroid derived 2, like 365140964951435752Mouse
401709754LOC131371767STARR-seq mESC enhancer starr_1587165141886751420049Mouse
1321288Hnrnpa2b1heterogeneous nuclear ribonucleoprotein A2/B165143741451448054Mouse
401702759LOC131371768STARR-seq mESC enhancer starr_1587365144529551448647Mouse
1557409Cbx3chromobox 365144759651460684Mouse
401713934LOC131371769STARR-seq mESC enhancer starr_1587565148277051483257Mouse
163662429LOC128925448CapStarr-seq enhancer MGSCv37_chr6:51459345-5145952865148632651486509Mouse
1314020Snx10sorting nexin 1065150088251567659Mouse
401708142LOC131371770STARR-seq mESC enhancer starr_1588165150888751511895Mouse
15021693Gm52883predicted gene, 5288365153906551541393Mouse
39128910Gm53331predicted gene, 5333165156696751572205Mouse
401702192LOC131371771STARR-seq mESC enhancer starr_1588765165401051655768Mouse
10034764Gm38811predicted gene, 3881165167195051688185Mouse
401712282LOC131371772STARR-seq mESC enhancer starr_1588865168433651687924Mouse
401832112LOC132411441STARR-positive B cell enhancer mm9_chr6:51663532-5166383365169051351690814Mouse
401717460LOC131371773STARR-seq mESC enhancer starr_1589165180998351812682Mouse
39130453LOC109279953VISTA enhancer mm41265183421551835594Mouse
734438Skap2src family associated phosphoprotein 265183614551989529Mouse
401702182LOC131371774STARR-seq mESC enhancer starr_1589665198275251984392Mouse
401704073LOC131371775STARR-seq mESC enhancer starr_1589765198843251990591Mouse
401704282LOC131371776STARR-seq mESC enhancer starr_1589865200284552005194Mouse
401707357LOC131371777STARR-seq mESC enhancer starr_1589965200779552008833Mouse
401710007LOC131371778STARR-seq mESC enhancer starr_1590065205492852056605Mouse
8181320Halr1Hoxa adjacent long noncoding RNA 165207992952090664Mouse
2309722Rps8-ps3ribosomal protein S8, pseudogene 365209520152095915Mouse
401709158LOC131371779STARR-seq mESC enhancer starr_1590165212888552131930Mouse
732851Hoxa1homeobox A165213257352135299Mouse
10047062Hotairm2Hoxa transcript antisense RNA, myeloid-specific 265213388252135509Mouse
5145930Hotairm1Hoxa transcript antisense RNA, myeloid-specific 165213550452139000Mouse
731539Hoxa2homeobox A265213938952141808Mouse
9835404Hoxaas2Hoxa cluster antisense RNA 265214265452146431Mouse
1557652Hoxa3homeobox A365214603952190316Mouse
5145859Gm15050predicted gene 1505065214986152151039Mouse
1608076Gm57749predicted gene, 5774965215215952170040Mouse
112697925730596B20RikRIKEN cDNA 5730596B20 gene65215413552157831Mouse
736246Hoxa4homeobox A465216666252168683Mouse
32725986Hoxaas3Hoxa cluster antisense RNA 365217810452190577Mouse
734225Hoxa5homeobox A565217876852181437Mouse
1615194Hoxa6homeobox A665218183852185652Mouse
6903156Miramistral long non-coding RNA65219147152192268Mouse
1557455Hoxa7homeobox A765219147152198757Mouse
1320653Hoxa9homeobox A965220007752203169Mouse
243049240Gm57855predicted gene, 5785565220007752217658Mouse
15022040Gm52902predicted gene, 5290265220445852209631Mouse
1608231Mir196bmicroRNA 196b65220706152207145Mouse
1320376Hoxa10homeobox A1065220817752217658Mouse
1558060Hoxa11homeobox A1165221908652222784Mouse
401714831LOC131371780STARR-seq mESC enhancer starr_1590265221946952221117Mouse
1608864Hoxa11oshomeobox A11, opposite strand65222201352226770Mouse
1557892Hoxa13homeobox A1365223583352237865Mouse
1616050HottipHoxa distal transcript antisense RNA65223976052244588Mouse
1612289Evx1oseven skipped homeotic gene 1, opposite strand65228537452291817Mouse
1558128Evx1even-skipped homeobox 165229048352295374Mouse
401716738LOC131371781STARR-seq mESC enhancer starr_1590365229083752292673Mouse
1616948Gm8129predicted pseudogene 812965232367552323988Mouse
39130059LOC110120476VISTA enhancer mm152465234214952345209Mouse
401704000LOC131371782STARR-seq mESC enhancer starr_1590465241481552418449Mouse
39128753LOC109279862VISTA enhancer mm4865241960252421514Mouse
16126461700094M24RikRIKEN cDNA 1700094M24 gene65246943652477070Mouse
1332315Hibadh3-hydroxyisobutyrate dehydrogenase65252321552617285Mouse
9611659Gm33047predicted gene, 3304765253736352556798Mouse
401717103LOC131371783STARR-seq mESC enhancer starr_1590565255673852558730Mouse
401702545LOC131371784STARR-seq mESC enhancer starr_1590665258235352584095Mouse
401707219LOC131371785STARR-seq mESC enhancer starr_1590765261405252615243Mouse
15554237Gm24355predicted gene, 2435565261621952616340Mouse
401838132LOC132411442STARR-positive B cell enhancer ABC_E53665261723152617532Mouse
15019963Gm52884predicted gene, 5288465266919052669943Mouse
401833980LOC132411443STARR-positive B cell enhancer ABC_E810465269048752690788Mouse
732526Tax1bp1Tax1 (human T cell leukemia virus type I) binding protein 165269067752743765Mouse
1320174Jazf1JAZF zinc finger 165274505053045613Mouse
15020386Gm52904predicted gene, 5290465276202552775814Mouse
163674052LOC128925449CapStarr-seq enhancer MGSCv37_chr6:52767269-5276747065279426052794461Mouse
401707499LOC131371786STARR-seq mESC enhancer starr_1591065279840152800633Mouse
401701487LOC131371787STARR-seq mESC enhancer starr_1591265283811352840071Mouse
15020474Gm52903predicted gene, 5290365284341552851222Mouse
163711568LOC128925450CapStarr-seq enhancer MGSCv37_chr6:52862213-5286241465288920452889405Mouse
163699479LOC128925451CapStarr-seq enhancer MGSCv37_chr6:52862461-5286266665288945252889657Mouse
163693449LOC128925452CapStarr-seq enhancer MGSCv37_chr6:52869251-5286943465289624252896425Mouse
401708266LOC131371788STARR-seq mESC enhancer starr_1591365291743452920300Mouse
9626243Gm33219predicted gene, 3321965294214352953534Mouse
401706665LOC131371789STARR-seq mESC enhancer starr_1591465295037752952166Mouse
401710378LOC131371790STARR-seq mESC enhancer starr_1591565299435152994360Mouse
2299036Gm15573predicted gene 1557365302283553023418Mouse
9661773Gm33097predicted gene, 3309765303707453045032Mouse
401705768LOC131371791STARR-seq mESC enhancer starr_1591765308657953087661Mouse
401715296LOC131371792STARR-seq mESC enhancer starr_1591965314081453143034Mouse
2309518Gm8143predicted gene 814365314753553148723Mouse
39130751Gm57757predicted gene, 5775765317279653172938Mouse
401701824LOC131371793STARR-seq mESC enhancer starr_1592065317756353181446Mouse
401705839LOC131371794STARR-seq mESC enhancer starr_1592165318499853185334Mouse
2303903Gm4872predicted gene 487265319814953203584Mouse
401709888LOC131371795STARR-seq mESC enhancer starr_1592265322013353221954Mouse
9601010Gm33348predicted gene, 3334865323946053245238Mouse
1619836Creb5cAMP responsive element binding protein 565326415453677349Mouse
15557982Gm25818predicted gene, 2581865341095953411122Mouse
401711577LOC131371796STARR-seq mESC enhancer starr_1592365341137853412575Mouse
401704798LOC131371797STARR-seq mESC enhancer starr_1592465343185953433479Mouse
10022354Gm38815predicted gene, 3881565344649753448549Mouse
10021953Gm38814predicted gene, 3881465347052253475263Mouse
401712633LOC131371798STARR-seq mESC enhancer starr_1592665353532653538101Mouse
9658124Gm33392predicted gene, 3339265355833653569861Mouse
401703093LOC131371799STARR-seq mESC enhancer starr_1593065360806153609316Mouse
401712434LOC131371800STARR-seq mESC enhancer starr_1593165363407153635318Mouse
401702825LOC131371801STARR-seq mESC enhancer starr_1593265370877153710467Mouse
401707866LOC131371802STARR-seq mESC enhancer starr_1593365372679753728304Mouse
39128684Gm57762predicted gene, 5776265374134353741461Mouse
2310780Gm5306predicted gene 530665375434953755168Mouse
401712873LOC131371803STARR-seq mESC enhancer starr_1593465377739653779897Mouse
1321954TrilTLR4 interactor with leucine-rich repeats65379245353797810Mouse
11082055Gm16499predicted gene 1649965380071153835998Mouse
401711635LOC131371804STARR-seq mESC enhancer starr_1593565382059453822805Mouse
401717084LOC131371805STARR-seq mESC enhancer starr_1593665384870353852888Mouse
15003101Gm22910predicted gene, 2291065384900253849133Mouse
1557438Cpvlcarboxypeptidase, vitellogenic-like65385010653955658Mouse
9602770Gm33716predicted gene, 3371665385802153860086Mouse
401714184LOC131371806STARR-seq mESC enhancer starr_1593765385917853862190Mouse
16119694921529L05RikRIKEN cDNA 4921529L05 gene65395567653995015Mouse
401712424LOC131371807STARR-seq mESC enhancer starr_1594065399443353996674Mouse
401704793LOC131371808STARR-seq mESC enhancer starr_1594265400754754010564Mouse
1332162Chn2chimerin 265401691754278797Mouse
16106649530036M11RikRIKEN cDNA 9530036M11 gene65411492054129472Mouse
401717433LOC131371809STARR-seq mESC enhancer starr_1594765415362354155704Mouse
2299035Gm15526predicted gene 1552665415418254154702Mouse
5145353Gm15527predicted gene 1552765422190554232149Mouse
22997549130019P16RikRIKEN cDNA 9130019P16 gene65424666654407206Mouse
1323127Prr15proline rich 1565429044254320421Mouse
9646570Gm34169predicted gene, 3416965430670354320421Mouse
401704799LOC131371810STARR-seq mESC enhancer starr_1594965430677854308191Mouse
401708370LOC131371811STARR-seq mESC enhancer starr_1595065432598154327323Mouse
1622835Wipf3WAS/WASL interacting protein family, member 365440620654480753Mouse
11667149Gm44026predicted gene, 4402665443373154448095Mouse
1557661Scrn1secernin 165445181354543332Mouse
15020458Gm52863predicted gene, 5286365448939754510045Mouse
1553813Fkbp14FK506 binding protein 1465455459054574329Mouse
1557515Plekha8pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 865457188354622808Mouse
9672658Gm34249predicted gene, 3424965463420154639580Mouse
401703839LOC131371812STARR-seq mESC enhancer starr_1595465464396754647069Mouse
1619177Mturnmaturin, neural progenitor differentiation regulator homolog (Xenopus)65465860954680840Mouse
39128960Gm44008predicted gene, 4400865466612054675224Mouse
401714020LOC131371813STARR-seq mESC enhancer starr_1595665467528554678632Mouse
401706259LOC131371814STARR-seq mESC enhancer starr_1595765468104354686597Mouse
163685446LOC128925453CapStarr-seq enhancer MGSCv37_chr6:54760023-5476020665478701454787197Mouse
401835224LOC132411444STARR-positive B cell enhancer ABC_E1038165479337754793677Mouse
1622781Znrf2zinc and ring finger 265479390154867209Mouse
1557544Nod1nucleotide-binding oligomerization domain containing 165490092754949655Mouse
401706239LOC131371815STARR-seq mESC enhancer starr_1596965492775254931546Mouse
15000867Gm24230predicted gene, 2423065495163654951764Mouse
2302840Ggctgamma-glutamyl cyclotransferase65496208054969947Mouse
39130028LOC108695204ES cell cis-regulatory motif 6a65497006754970096Mouse
10007040Gm38539predicted gene, 3853965497910554980983Mouse
401706128LOC131371816STARR-seq mESC enhancer starr_1597165501249855016528Mouse
1317293Gars1glycyl-tRNA synthetase 165501498655056489Mouse
401714332LOC131371817STARR-seq mESC enhancer starr_1597265505877155060796Mouse
733139Crhr2corticotropin releasing hormone receptor 265506703355110001Mouse
9667234Gm34358predicted gene, 3435865513141455144179Mouse
401712867LOC131371818STARR-seq mESC enhancer starr_1597365513560955137208Mouse
1550692Inmtindolethylamine N-methyltransferase65514761255151975Mouse
1622834Mindy4MINDY lysine 48 deubiquitinase 465518033755297208Mouse
10005023Gm38819predicted gene, 3881965530262155305380Mouse
10181Aqp1aquaporin 165531328455325540Mouse
10645Ghrhrgrowth hormone releasing hormone receptor65535320455365515Mouse
71785116430584L05RikRIKEN cDNA 6430584L05 gene65537387255389270Mouse
10085Adcyap1r1adenylate cyclase activating polypeptide 1 receptor 165542848655478440Mouse
401705932LOC131371819STARR-seq mESC enhancer starr_1597865548989955491445Mouse
401707954LOC131371820STARR-seq mESC enhancer starr_1597965550455355507157Mouse
9655828Gm34441predicted gene, 3444165551394555629032Mouse
401712828LOC131371821STARR-seq mESC enhancer starr_1598065559118655592371Mouse
2299711Gm3729predicted gene 372965560206455602592Mouse
1557246Neurod6neurogenic differentiation 665565480355658248Mouse
5686576Gm3279predicted gene 327965566155655671559Mouse
10019522Gm38820predicted gene, 3882065576572555781705Mouse
401709019LOC131371822STARR-seq mESC enhancer starr_1598165576682755770069Mouse
1618966Itprid1ITPR interacting domain containing 165578230655955872Mouse
401706241LOC131371823STARR-seq mESC enhancer starr_1598265580248455804317Mouse
401708129LOC131371824STARR-seq mESC enhancer starr_1598365585238755853548Mouse
733728Ppp1r17protein phosphatase 1, regulatory subunit 1765599448256009674Mouse
5143465Gm18099predicted gene, 1809965603792556038465Mouse
401706103LOC131371825STARR-seq mESC enhancer starr_1598465604260556043570Mouse
68464Pde1cphosphodiesterase 1C65604678356629590Mouse
401701843LOC131371826STARR-seq mESC enhancer starr_1598565607857056080529Mouse
401704603LOC131371827STARR-seq mESC enhancer starr_1598665614161456143242Mouse

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
1301266Lmr4_mleishmaniasis resistance 4 (mouse)Not determined64209335876093500Mouse
4140989Spqq2_msperm quality QTL 2 (mouse)Not determined1771159851711719Mouse
12910785Pwgrq16_mpost-weaning growth rate QTL 16 (mouse)64380374777788506Mouse
11252142Mom12_mModifier of Min 12 (mouse)63387226167872400Mouse
14696807Rbcn2_mrod bipolar cell number 2 (mouse)65118698056186985Mouse
4140983Srilp_msleep response to influenza, light phase (mouse)Not determined4870349075424693Mouse
12910798Pwgrq5_mpre-weaning growth rate QTL 5 (mouse)64380374777788506Mouse
1300767Aliq4_macute lung injury QTL 4 (mouse)Not determined63627333270273435Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648696934125336963Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
14746995Manh60_mmandible shape 60 (mouse)63720266271202662Mouse
12910807Pwbwq11_mpost-weaning body weight QTL 11 (mouse)64380374777788506Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65115613485156284Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414773364675Mouse
12910802Pwbwq12_mpost-weaning body weight QTL 12 (mouse)64380374777788506Mouse
4141094Hrtr1_mheart rate 1 (mouse)Not determined3674146370741463Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64529099387403016Mouse
4141988Obrq3_mobesity resistance QTL 3 (mouse)Not determined2829099362291115Mouse
12910809Pwbwq10_mpost-weaning body weight QTL 10 (mouse)64380374777788506Mouse
12910820Ogrq3_moverall growth rate QTL 3 (mouse)64380374777788506Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
12904940Edlmmq5_mextensor digitorum longus muscle mass QTL 5 (mouse)61961634653616346Mouse
12904943Tammq4_mtibialis anterior muscle mass QTL 4 (mouse)61961634653616346Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268571299759Mouse
4141454Obrq4_mobesity resistance QTL 4 (mouse)Not determined3170349965703611Mouse
12904952Gmmq4_mgastrocnemius muscle mass QTL 4 (mouse)61961634653616346Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62499999979976983Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080576983Mouse
1301850Fglu_mfasting glucose (mouse)Not determined61771159851711719Mouse
1300959Lxw2_mlupus BXSB x NZW 2 (mouse)Not determined63387226167872400Mouse
1301724Pcd4ts1_mp-glycoprotein positive CD4 T cell subset 1 (mouse)Not determined61771159851711719Mouse
10412107Desp4_mdespair 4 (mouse)Not determined62004983054049830Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648703490125333748Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5435041188356155Mouse
1301326Trbv4c2_mT cell receptor beta variable 4 (mouse)Not determined64086823071356155Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63864656092584431Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645290993128811995Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652138693116132228Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3282758578215957Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64157698575576985Mouse
12880425V25Dq5_mvitamin D inactive form serum level QTL 5 (mouse)63267698066676980Mouse
11040600Lmr4c_mleishmaniasis resistance 4c (mouse)64209335876093500Mouse
11040601Lmr4a_mleishmaniasis resistance 4a (mouse)64209335876093500Mouse
14700690Ccs6_mcolon cancer susceptibility 6 (mouse)62377693457776934Mouse
11533915Mts4_mmammary tumor susceptibility 4 (mouse)64209335876093500Mouse
10043885Cia6c_mcollagen induced arthritis QTL 6c (mouse)Not determined64444280571096451Mouse
1357539Bsbob3_mBSB obesity 3 (mouse)Not determined63644845670448576Mouse
27226726Tibmd7_mtibia midshaft diameter 7, 16 week (mouse)61769999953476985Mouse


Additional Information

Database Acc Id Source(s)
MGD MGI:6317038 MouseQtl