Mir148a (microRNA 148a) - Rat Genome Database
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Gene: Mir148a (microRNA 148a) Mus musculus
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Symbol: Mir148a
Name: microRNA 148a
RGD ID: 1608325
MGI Page MGI
Description: Is expressed in gut; lung; and tooth. Orthologous to human MIR148A (microRNA 148a).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-148a; Mirn; Mirn148; Mirn148a
RGD Orthologs
Human
Rat
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39651,246,792 - 51,246,890 (-)NCBIGRCm39mm39
GRCm39 Ensembl651,246,792 - 51,246,890 (-)Ensembl
GRCm38651,269,812 - 51,269,910 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl651,269,812 - 51,269,910 (-)EnsemblGRCm38mm10GRCm38
MGSCv37651,219,811 - 51,219,909 (-)NCBIGRCm37mm9NCBIm37
Celera651,786,114 - 51,786,212 (-)NCBICelera
Cytogenetic Map6B3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12007417   PMID:16381832   PMID:17369397   PMID:17604727   PMID:17936263   PMID:18452032   PMID:18791161   PMID:19188425   PMID:19559694   PMID:19727952   PMID:20215419   PMID:20413612  
PMID:21037258   PMID:21068402   PMID:21267068   PMID:21822254   PMID:22454450   PMID:22547064   PMID:22753148   PMID:23321675   PMID:23532995   PMID:23646144   PMID:23897429   PMID:24205035  
PMID:24269082   PMID:25486906   PMID:26107383   PMID:26341476   PMID:26437365   PMID:26901150   PMID:27055562   PMID:28298326   PMID:28472596   PMID:28587848   PMID:28703810   PMID:28941704  
PMID:29183643   PMID:30244246   PMID:30362572   PMID:30562760   PMID:30653268   PMID:30728459   PMID:31726056   PMID:33011404  


Genomics

Comparative Map Data
Mir148a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39651,246,792 - 51,246,890 (-)NCBIGRCm39mm39
GRCm39 Ensembl651,246,792 - 51,246,890 (-)Ensembl
GRCm38651,269,812 - 51,269,910 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl651,269,812 - 51,269,910 (-)EnsemblGRCm38mm10GRCm38
MGSCv37651,219,811 - 51,219,909 (-)NCBIGRCm37mm9NCBIm37
Celera651,786,114 - 51,786,212 (-)NCBICelera
Cytogenetic Map6B3NCBI
MIR148A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl725,949,919 - 25,949,986 (-)EnsemblGRCh38hg38GRCh38
GRCh38725,949,919 - 25,949,986 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37725,989,539 - 25,989,606 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36725,956,063 - 25,956,130 (-)NCBINCBI36hg18NCBI36
Celera725,978,394 - 25,978,461 (-)NCBI
Cytogenetic Map7p15.2NCBI
HuRef725,877,181 - 25,877,242 (-)NCBIHuRef
CHM1_1725,991,141 - 25,991,208 (-)NCBICHM1_1
CRA_TCAGchr7v2726,040,542 - 26,040,609 (-)NCBI
Mir148a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2480,333,762 - 80,333,858 (-)NCBI
Rnor_6.0 Ensembl481,013,269 - 81,013,365 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0481,013,269 - 81,013,365 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera475,234,901 - 75,234,997 (-)NCBICelera
Cytogenetic Map4q24NCBI
MIR148A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1439,301,843 - 39,301,920 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11439,301,847 - 39,301,906 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
MIR148A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1846,415,202 - 46,415,281 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11846,415,213 - 46,415,280 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21851,216,035 - 51,216,102 (+)NCBISscrofa10.2Sscrofa10.2susScr3


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080600000Mouse
27226726Tibmd7_mtibia midshaft diameter 7, 16 week (mouse)61770000053500000Mouse
1301724Pcd4ts1_mp-glycoprotein positive CD4 T cell subset 1 (mouse)Not determined61773466351734784Mouse
4140989Spqq2_msperm quality QTL 2 (mouse)Not determined1773466351734784Mouse
1301850Fglu_mfasting glucose (mouse)Not determined61773466351734784Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414873387692Mouse
12904940Edlmmq5_mextensor digitorum longus muscle mass QTL 5 (mouse)61963941153639411Mouse
12904943Tammq4_mtibialis anterior muscle mass QTL 4 (mouse)61963941153639411Mouse
12904952Gmmq4_mgastrocnemius muscle mass QTL 4 (mouse)61963941153639411Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268671322775Mouse
10412107Desp4_mdespair 4 (mouse)Not determined62007289554072895Mouse
14700690Ccs6_mcolon cancer susceptibility 6 (mouse)62380000057800000Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62500000080000000Mouse
4141988Obrq3_mobesity resistance QTL 3 (mouse)Not determined2831405962314181Mouse
4141454Obrq4_mobesity resistance QTL 4 (mouse)Not determined3172656565726677Mouse
12880425V25Dq5_mvitamin D inactive form serum level QTL 5 (mouse)63270000066700000Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3285065078238974Mouse
1300959Lxw2_mlupus BXSB x NZW 2 (mouse)Not determined63389528167895420Mouse
11252142Mom12_mModifier of Min 12 (mouse)63389528167895420Mouse
1300767Aliq4_macute lung injury QTL 4 (mouse)Not determined63629634770296450Mouse
1357539Bsbob3_mBSB obesity 3 (mouse)Not determined63647147170471591Mouse
4141094Hrtr1_mheart rate 1 (mouse)Not determined3676447870764478Mouse
14746995Manh60_mmandible shape 60 (mouse)63722567771225677Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
1301326Trbv4c2_mT cell receptor beta variable 4 (mouse)Not determined64089129671379171Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64160000075600000Mouse
1301266Lmr4_mleishmaniasis resistance 4 (mouse)Not determined64211637376116515Mouse
11040600Lmr4c_mleishmaniasis resistance 4c (mouse)64211637376116515Mouse
11040601Lmr4a_mleishmaniasis resistance 4a (mouse)64211637376116515Mouse
11533915Mts4_mmammary tumor susceptibility 4 (mouse)64211637376116515Mouse
12910785Pwgrq16_mpost-weaning growth rate QTL 16 (mouse)64382681377811523Mouse
12910798Pwgrq5_mpre-weaning growth rate QTL 5 (mouse)64382681377811523Mouse
12910802Pwbwq12_mpost-weaning body weight QTL 12 (mouse)64382681377811523Mouse
12910807Pwbwq11_mpost-weaning body weight QTL 11 (mouse)64382681377811523Mouse
12910809Pwbwq10_mpost-weaning body weight QTL 10 (mouse)64382681377811523Mouse
12910820Ogrq3_moverall growth rate QTL 3 (mouse)64382681377811523Mouse
10043885Cia6c_mcollagen induced arthritis QTL 6c (mouse)Not determined64446587171119467Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
4140983Srilp_msleep response to influenza, light phase (mouse)Not determined4872655675447710Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65117915085179300Mouse
14696807Rbcn2_mrod bipolar cell number 2 (mouse)65121000056210000Mouse

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Kdm6bmmu-miR-148a-3pMirtarbaseexternal_infoLuciferase reporter assay//qRT-PCR//Western blotFunctional MTI20833714
Rock1mmu-miR-148a-3pMirtarbaseexternal_infoImmunofluorescence//Luciferase reporter assay//qRTFunctional MTI22547064
Dnmt1mmu-miR-148a-3pMirtarbaseexternal_infoLuciferase reporter assayFunctional MTI23532995
Pbxip1mmu-miR-148a-3pOncomiRDBexternal_infoNANA23321675
Dnmt1mmu-miR-148a-3pOncomiRDBexternal_infoNANA22935141
Ptenmmu-miR-148a-3pOncomiRDBexternal_infoNANA22496917
Pik3ip1mmu-miR-148a-3pOncomiRDBexternal_infoNANA22266859
Rock1mmu-miR-148a-3pOncomiRDBexternal_infoNANA21994419
Cdc25bmmu-miR-148a-3pOncomiRDBexternal_infoNANA21709669
Cdkn1bmmu-miR-148a-3pOncomiRDBexternal_infoNANA21552422
Bcl2mmu-miR-148a-3pOncomiRDBexternal_infoNANA21455217
Cckbrmmu-miR-148a-3pOncomiRDBexternal_infoNANA21205300
Mitfmmu-miR-148a-3pOncomiRDBexternal_infoNANA20644734
Rps6ka5mmu-miR-148a-3pOncomiRDBexternal_infoNANA20406806
Camk2ammu-miR-148a-3pMirtarbaseexternal_infoLuciferase reporter assay//qRT-PCR//Western blotFunctional MTI21068402
Dnmt1mmu-miR-148a-3pOncomiRDBexternal_infoNANA20146264

Predicted Targets
Summary Value
Count of predictions:20733
Count of gene targets:8737
Count of transcripts:14431
Interacting mature miRNAs:mmu-miR-148a-3p, mmu-miR-148a-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000083571
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl651,269,812 - 51,269,910 (-)Ensembl
RefSeq Acc Id: NR_029719
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39651,246,792 - 51,246,890 (-)NCBI
GRCm38651,269,812 - 51,269,910 (-)ENTREZGENE
MGSCv37651,219,811 - 51,219,909 (-)RGD
Celera651,786,114 - 51,786,212 (-)RGD
cM Map6 ENTREZGENE
Sequence:
Promoters
RGD ID:6889698
Promoter ID:EPDNEW_M8300
Type:single initiation site
Name:Mir148a_1
Description:Mus musculus microRNA 148a , microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38651,269,826 - 51,269,886EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2676833 AgrOrtholog
Ensembl Genes ENSMUSG00000065505 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083571 ENTREZGENE
MGD MGI:2676833 ENTREZGENE
miRBase MI0000550 ENTREZGENE
NCBI Gene 387166 ENTREZGENE
PhenoGen Mir148a PhenoGen
RNAcentral URS00003BBF48 RNACentral
  URS00003E16E5 RNACentral
  URS000075C560 RNACentral