Mir148a (microRNA 148a) - Rat Genome Database

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Gene: Mir148a (microRNA 148a) Mus musculus
Analyze
Symbol: Mir148a
Name: microRNA 148a
RGD ID: 1608325
MGI Page MGI
Description: Acts upstream of or within several processes, including cellular response to estrogen stimulus; cellular response to tumor necrosis factor; and sensory perception of sound. Is expressed in gut; inner ear vestibular component; lung; and tooth. Orthologous to human MIR148A (microRNA 148a).
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: mir-148a; Mirn; Mirn148; Mirn148a
RGD Orthologs
Human
Rat
Dog
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39651,246,792 - 51,246,890 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl651,246,792 - 51,246,890 (-)EnsemblGRCm39 Ensembl
GRCm38651,269,812 - 51,269,910 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl651,269,812 - 51,269,910 (-)EnsemblGRCm38mm10GRCm38
MGSCv37651,219,811 - 51,219,909 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera651,786,114 - 51,786,212 (-)NCBICelera
Cytogenetic Map6B3NCBI
cM Map624.64NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
2. Metformin exhibits its therapeutic effect in the treatment of pre-eclampsia via modulating the Met/H19/miR-148a-5p/P28 and Met/H19/miR-216-3p/EBI3 signaling pathways. Shu C, etal.
3. MVP-mediated exosomal sorting of miR-193a promotes colon cancer progression. Teng Y, etal., Nat Commun. 2017 Feb 17;8:14448. doi: 10.1038/ncomms14448.
Additional References at PubMed
PMID:12007417   PMID:16381832   PMID:17369397   PMID:17604727   PMID:17936263   PMID:18452032   PMID:18791161   PMID:19188425   PMID:19559694   PMID:19727952   PMID:20215419   PMID:20413612  
PMID:21037258   PMID:21068402   PMID:21267068   PMID:21822254   PMID:22454450   PMID:22547064   PMID:22753148   PMID:23321675   PMID:23532995   PMID:23646144   PMID:23897429   PMID:24205035  
PMID:24269082   PMID:24906954   PMID:25486906   PMID:26107383   PMID:26341476   PMID:26437365   PMID:26901150   PMID:27055562   PMID:28298326   PMID:28472596   PMID:28587848   PMID:28703810  
PMID:28941704   PMID:29183643   PMID:30362572   PMID:30562760   PMID:30653268   PMID:30728459   PMID:31473306   PMID:31726056   PMID:31756048   PMID:32213710   PMID:32719678   PMID:33011404  
PMID:33336366   PMID:34000812   PMID:35006577   PMID:35328424   PMID:35397056   PMID:36116511   PMID:36343560   PMID:36681141   PMID:38104056  


Genomics

Comparative Map Data
Mir148a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39651,246,792 - 51,246,890 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl651,246,792 - 51,246,890 (-)EnsemblGRCm39 Ensembl
GRCm38651,269,812 - 51,269,910 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl651,269,812 - 51,269,910 (-)EnsemblGRCm38mm10GRCm38
MGSCv37651,219,811 - 51,219,909 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera651,786,114 - 51,786,212 (-)NCBICelera
Cytogenetic Map6B3NCBI
cM Map624.64NCBI
MIR148A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38725,949,919 - 25,949,986 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl725,949,919 - 25,949,986 (-)EnsemblGRCh38hg38GRCh38
GRCh37725,989,539 - 25,989,606 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36725,956,063 - 25,956,130 (-)NCBINCBI36Build 36hg18NCBI36
Celera725,978,394 - 25,978,461 (-)NCBICelera
Cytogenetic Map7p15.2NCBI
HuRef725,877,181 - 25,877,242 (-)NCBIHuRef
CHM1_1725,991,141 - 25,991,208 (-)NCBICHM1_1
T2T-CHM13v2.0726,085,385 - 26,085,452 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2726,040,542 - 26,040,609 (-)NCBI
Mir148a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8481,664,431 - 81,664,527 (-)NCBIGRCr8
mRatBN7.2480,333,762 - 80,333,858 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl480,333,762 - 80,333,858 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx485,551,435 - 85,551,531 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0481,326,844 - 81,326,940 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0479,772,988 - 79,773,084 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0481,013,269 - 81,013,365 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl481,013,269 - 81,013,365 (-)EnsemblRnor6.0rn6Rnor6.0
Celera475,234,901 - 75,234,997 (-)NCBICelera
Cytogenetic Map4q24NCBI
MIR148A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11439,301,847 - 39,301,906 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1439,301,843 - 39,301,920 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1438,857,890 - 38,857,949 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01439,240,693 - 39,240,752 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11439,356,173 - 39,356,232 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01439,043,287 - 39,043,346 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01439,393,519 - 39,393,578 (-)NCBIUU_Cfam_GSD_1.0
MIR148A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1846,415,202 - 46,415,281 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11846,415,213 - 46,415,280 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21851,216,035 - 51,216,102 (+)NCBISscrofa10.2Sscrofa10.2susScr3

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:20733
Count of gene targets:8737
Count of transcripts:14431
Interacting mature miRNAs:mmu-miR-148a-3p, mmu-miR-148a-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
1301266Lmr4_mleishmaniasis resistance 4 (mouse)Not determined64209335876093500Mouse
4140989Spqq2_msperm quality QTL 2 (mouse)Not determined1771159851711719Mouse
12910785Pwgrq16_mpost-weaning growth rate QTL 16 (mouse)64380374777788506Mouse
11252142Mom12_mModifier of Min 12 (mouse)63387226167872400Mouse
14696807Rbcn2_mrod bipolar cell number 2 (mouse)65118698056186985Mouse
4140983Srilp_msleep response to influenza, light phase (mouse)Not determined4870349075424693Mouse
12910798Pwgrq5_mpre-weaning growth rate QTL 5 (mouse)64380374777788506Mouse
1300767Aliq4_macute lung injury QTL 4 (mouse)Not determined63627333270273435Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648696934125336963Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
14746995Manh60_mmandible shape 60 (mouse)63720266271202662Mouse
12910807Pwbwq11_mpost-weaning body weight QTL 11 (mouse)64380374777788506Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65115613485156284Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414773364675Mouse
12910802Pwbwq12_mpost-weaning body weight QTL 12 (mouse)64380374777788506Mouse
4141094Hrtr1_mheart rate 1 (mouse)Not determined3674146370741463Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64529099387403016Mouse
4141988Obrq3_mobesity resistance QTL 3 (mouse)Not determined2829099362291115Mouse
12910809Pwbwq10_mpost-weaning body weight QTL 10 (mouse)64380374777788506Mouse
12910820Ogrq3_moverall growth rate QTL 3 (mouse)64380374777788506Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
12904940Edlmmq5_mextensor digitorum longus muscle mass QTL 5 (mouse)61961634653616346Mouse
12904943Tammq4_mtibialis anterior muscle mass QTL 4 (mouse)61961634653616346Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268571299759Mouse
4141454Obrq4_mobesity resistance QTL 4 (mouse)Not determined3170349965703611Mouse
12904952Gmmq4_mgastrocnemius muscle mass QTL 4 (mouse)61961634653616346Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62499999979976983Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080576983Mouse
1301850Fglu_mfasting glucose (mouse)Not determined61771159851711719Mouse
1300959Lxw2_mlupus BXSB x NZW 2 (mouse)Not determined63387226167872400Mouse
1301724Pcd4ts1_mp-glycoprotein positive CD4 T cell subset 1 (mouse)Not determined61771159851711719Mouse
10412107Desp4_mdespair 4 (mouse)Not determined62004983054049830Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648703490125333748Mouse
1301326Trbv4c2_mT cell receptor beta variable 4 (mouse)Not determined64086823071356155Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63864656092584431Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645290993128811995Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3282758578215957Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64157698575576985Mouse
12880425V25Dq5_mvitamin D inactive form serum level QTL 5 (mouse)63267698066676980Mouse
11040600Lmr4c_mleishmaniasis resistance 4c (mouse)64209335876093500Mouse
11040601Lmr4a_mleishmaniasis resistance 4a (mouse)64209335876093500Mouse
14700690Ccs6_mcolon cancer susceptibility 6 (mouse)62377693457776934Mouse
11533915Mts4_mmammary tumor susceptibility 4 (mouse)64209335876093500Mouse
10043885Cia6c_mcollagen induced arthritis QTL 6c (mouse)Not determined64444280571096451Mouse
1357539Bsbob3_mBSB obesity 3 (mouse)Not determined63644845670448576Mouse
27226726Tibmd7_mtibia midshaft diameter 7, 16 week (mouse)61769999953476985Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000083571
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl651,246,792 - 51,246,890 (-)Ensembl
GRCm38.p6 Ensembl651,269,812 - 51,269,910 (-)Ensembl
RefSeq Acc Id: NR_029719
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39651,246,792 - 51,246,890 (-)NCBI
GRCm38651,269,812 - 51,269,910 (-)ENTREZGENE
MGSCv37651,219,811 - 51,219,909 (-)RGD
Celera651,786,114 - 51,786,212 (-)RGD
cM Map6 ENTREZGENE
Sequence:
Promoters
RGD ID:6889698
Promoter ID:EPDNEW_M8300
Type:single initiation site
Name:Mir148a_1
Description:Mus musculus microRNA 148a , microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38651,269,826 - 51,269,886EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2676833 AgrOrtholog
Ensembl Genes ENSMUSG00000065505 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083571 ENTREZGENE
MGD MGI:2676833 ENTREZGENE
miRBase MI0000550 ENTREZGENE
NCBI Gene 387166 ENTREZGENE
PhenoGen Mir148a PhenoGen
RNAcentral URS00003BBF48 RNACentral
  URS00003E16E5 RNACentral
  URS000075C560 RNACentral