MIR148A (microRNA mir-148a) - Rat Genome Database

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Gene: MIR148A (microRNA mir-148a) Sus scrofa
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Symbol: MIR148A
Name: microRNA mir-148a
RGD ID: 13989719
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna
RefSeq Status: PROVISIONAL
Previously known as: microRNA 148a; ssc-mir-148a
RGD Orthologs
Human
Mouse
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1846,415,202 - 46,415,281 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11846,415,213 - 46,415,280 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21851,216,035 - 51,216,102 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:15885146   PMID:16381832   PMID:19917043   PMID:20180025   PMID:21312241   PMID:24499489  


Genomics

Comparative Map Data
MIR148A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1846,415,202 - 46,415,281 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11846,415,213 - 46,415,280 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21851,216,035 - 51,216,102 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MIR148A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38725,949,919 - 25,949,986 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl725,949,919 - 25,949,986 (-)EnsemblGRCh38hg38GRCh38
GRCh37725,989,539 - 25,989,606 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36725,956,063 - 25,956,130 (-)NCBINCBI36hg18NCBI36
Celera725,978,394 - 25,978,461 (-)NCBI
Cytogenetic Map7p15.2NCBI
HuRef725,877,181 - 25,877,242 (-)NCBIHuRef
CHM1_1725,991,141 - 25,991,208 (-)NCBICHM1_1
T2T-CHM13v2.0726,085,385 - 26,085,452 (-)NCBI
CRA_TCAGchr7v2726,040,542 - 26,040,609 (-)NCBI
Mir148a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39651,246,792 - 51,246,890 (-)NCBIGRCm39mm39
GRCm39 Ensembl651,246,792 - 51,246,890 (-)Ensembl
GRCm38651,269,812 - 51,269,910 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl651,269,812 - 51,269,910 (-)EnsemblGRCm38mm10GRCm38
MGSCv37651,219,811 - 51,219,909 (-)NCBIGRCm37mm9NCBIm37
Celera651,786,114 - 51,786,212 (-)NCBICelera
Cytogenetic Map6B3NCBI
Mir148a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2480,333,762 - 80,333,858 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl480,333,762 - 80,333,858 (-)Ensembl
Rnor_6.0481,013,269 - 81,013,365 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl481,013,269 - 81,013,365 (-)EnsemblRnor6.0rn6Rnor6.0
Celera475,234,901 - 75,234,997 (-)NCBICelera
Cytogenetic Map4q24NCBI
MIR148A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11439,301,847 - 39,301,906 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1439,301,843 - 39,301,920 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1438,857,890 - 38,857,949 (-)NCBI
ROS_Cfam_1.01439,240,693 - 39,240,752 (-)NCBI
UMICH_Zoey_3.11439,356,173 - 39,356,232 (-)NCBI
UNSW_CanFamBas_1.01439,043,287 - 39,043,346 (-)NCBI
UU_Cfam_GSD_1.01439,393,519 - 39,393,578 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000019872
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1846,415,202 - 46,415,281 (+)Ensembl
RefSeq Acc Id: NR_038485
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11846,415,213 - 46,415,280 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000018277 Ensembl, ENTREZGENE
Ensembl Transcript ENSSSCT00000019872 ENTREZGENE
miRBase MI0002418 ENTREZGENE
NCBI Gene MIR148A ENTREZGENE
RNAcentral URS00003BBF48 RNACentral
  URS00003E16E5 RNACentral
  URS000075DD6C RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 MIR148A  microRNA mir-148a    microRNA 148a  Symbol and/or name change 5135510 APPROVED