Pkd1 (polycystin 1, transient receptor potential channel interacting) - Rat Genome Database

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Gene: Pkd1 (polycystin 1, transient receptor potential channel interacting) Mus musculus
Analyze
Symbol: Pkd1
Name: polycystin 1, transient receptor potential channel interacting
RGD ID: 11105
MGI Page MGI
Description: Enables calcium channel activity. Involved in several processes, including cytoplasmic sequestering of transcription factor; placenta development; and receptor signaling pathway via JAK-STAT. Acts upstream of or within several processes, including animal organ development; circulatory system development; and regulation of mitotic spindle organization. Located in several cellular components, including Golgi apparatus; cell surface; and motile cilium. Part of polycystin complex. Is expressed in several structures, including alimentary system; cardiovascular system; central nervous system; genitourinary system; and respiratory system. Used to study autosomal recessive polycystic kidney disease; hypertrophic cardiomyopathy; and polycystic kidney disease 1. Human ortholog(s) of this gene implicated in autosomal dominant polycystic kidney disease; intracranial aneurysm; and polycystic kidney disease 1. Orthologous to human PKD1 (polycystin 1, transient receptor potential channel interacting).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: autosomal dominant polycystic kidney disease 1 protein homolog; FLJ00285; mFLJ00285; MGC118471; PC; PC-; PC1; polycystic kidney disease 1 homolog; polycystin 1; polycystin 1, transient receptor poteintial channel interacting; polycystin-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,767,657 - 24,815,488 (+)NCBIGRCm39mm39
GRCm39 Ensembl1724,768,808 - 24,815,482 (+)Ensembl
GRCm381724,548,689 - 24,596,514 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,549,834 - 24,596,508 (+)EnsemblGRCm38mm10GRCm38
MGSCv371724,686,895 - 24,733,459 (+)NCBIGRCm37mm9NCBIm37
MGSCv361724,277,550 - 24,324,083 (+)NCBImm8
Celera1725,067,435 - 25,114,509 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
blood vessel development  (IMP)
branching involved in lymph vessel morphogenesis  (ISO)
branching morphogenesis of an epithelial tube  (IDA,ISO)
calcium ion transmembrane transport  (IMP)
calcium ion transport  (IDA,IMP,ISO)
cartilage condensation  (IMP)
cartilage development  (ISO)
cell-cell adhesion  (IMP)
cell-cell signaling by wnt  (ISO)
cytoplasmic sequestering of transcription factor  (IMP)
detection of mechanical stimulus  (IDA,IMP)
digestive tract development  (ISO)
embryonic placenta development  (IMP)
establishment of cell polarity  (IMP)
genitalia development  (ISO)
heart development  (IMP,ISO)
in utero embryonic development  (IGI,IMP)
kidney development  (IGI,IMP)
liver development  (IGI)
lung epithelium development  (ISO)
lymph vessel morphogenesis  (IMP)
mesonephric duct development  (ISO)
mesonephric tubule development  (ISO)
metanephric ascending thin limb development  (ISO)
metanephric collecting duct development  (ISO)
metanephric distal tubule morphogenesis  (ISO)
metanephric proximal tubule development  (ISO)
neural tube development  (ISO)
nitrogen compound metabolic process  (IGI)
peptidyl-serine phosphorylation  (IMP)
placenta blood vessel development  (IMP)
positive regulation of cyclin-dependent protein serine/threonine kinase activity  (ISO)
positive regulation of cytosolic calcium ion concentration  (ISO)
positive regulation of protein binding  (IMP)
positive regulation of transcription by RNA polymerase II  (ISO)
protein export from nucleus  (IMP)
protein heterotetramerization  (ISO)
receptor signaling pathway via JAK-STAT  (EXP,IDA)
regulation of cell adhesion  (IMP)
regulation of cell cycle  (IDA)
regulation of G1/S transition of mitotic cell cycle  (ISO)
regulation of mitotic spindle organization  (IMP)
regulation of proteasomal protein catabolic process  (IMP,ISO)
response to fluid shear stress  (IMP)
skin development  (ISO)
spinal cord development  (ISO)
Wnt signaling pathway  (IEA)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal adipose tissue development  (IAGP)
abnormal amniotic fluid composition  (IAGP)
abnormal basicranium morphology  (IAGP)
abnormal bile duct morphology  (IAGP)
abnormal blood vessel morphology  (IAGP)
abnormal bone marrow cavity morphology  (IAGP)
abnormal bone marrow morphology  (IAGP)
abnormal bone mineralization  (IAGP)
abnormal brain vasculature morphology  (IAGP)
abnormal brain ventricle morphology  (IAGP)
abnormal cartilage development  (IAGP)
abnormal circulating creatinine level  (IAGP)
abnormal circulating mineral level  (IAGP)
abnormal common bile duct morphology  (IAGP)
abnormal compact bone morphology  (IAGP)
abnormal conotruncal ridge morphology  (IAGP)
abnormal craniofacial bone morphology  (IAGP)
abnormal exocrine pancreas morphology  (IAGP)
abnormal fluid regulation  (IAGP)
abnormal kidney collecting duct morphology  (IAGP)
abnormal kidney epithelial cell primary cilium physiology  (IAGP)
abnormal kidney epithelium morphology  (IAGP)
abnormal kidney morphology  (IAGP)
abnormal kidney physiology  (IAGP)
abnormal liver morphology  (IAGP)
abnormal loop of Henle ascending limb thick segment morphology  (IAGP)
abnormal Meckel's cartilage morphology  (IAGP)
abnormal mitotic spindle morphology  (IAGP)
abnormal myocardial trabeculae morphology  (IAGP)
abnormal osteoblast differentiation  (IAGP)
abnormal pancreatic acinus morphology  (IAGP)
abnormal perichondrium morphology  (IAGP)
abnormal peroxisome morphology  (IAGP)
abnormal placenta development  (IAGP)
abnormal placenta morphology  (IAGP)
abnormal placenta vasculature  (IAGP)
abnormal presphenoid synchondrosis  (IAGP)
abnormal radius morphology  (IAGP)
abnormal redox activity  (IAGP)
abnormal skeleton development  (IAGP)
abnormal sphenoid bone morphology  (IAGP)
abnormal sphenooccipital synchondrosis  (IAGP)
abnormal spine curvature  (IAGP)
abnormal thyroid cartilage morphology  (IAGP)
abnormal ulna morphology  (IAGP)
abnormal vertebrae morphology  (IAGP)
aortic aneurysm  (IAGP)
aortic dissection  (IAGP)
atrial septal defect  (IAGP)
bile duct inflammation  (IAGP)
biliary cyst  (IAGP)
chondrodystrophy  (IAGP)
common atrioventricular valve  (IAGP)
decreased blood urea nitrogen level  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased bone mineral density  (IAGP)
decreased bone mineralization  (IAGP)
decreased chondrocyte proliferation  (IAGP)
decreased circulating alkaline phosphatase level  (IEA)
decreased circulating creatinine level  (IAGP)
decreased circulating glucose level  (IAGP)
decreased circulating total protein level  (IEA)
decreased compact bone mass  (IAGP)
decreased compact bone thickness  (IAGP)
decreased embryo size  (IAGP)
decreased erythrocyte cell number  (IEA)
decreased fatty acid oxidation  (IAGP)
decreased hematocrit  (IEA)
decreased kidney cell proliferation  (IAGP)
decreased kidney weight  (IAGP)
decreased length of long bones  (IAGP)
decreased liver function  (IAGP)
decreased pancreatic islet number  (IAGP)
decreased trabecular bone mass  (IAGP)
decreased trabecular bone volume  (IAGP)
decreased width of hypertrophic chondrocyte zone  (IAGP)
delayed bone ossification  (IAGP)
delayed endochondral bone ossification  (IAGP)
delayed intramembranous bone ossification  (IAGP)
dilated bile duct  (IAGP)
dilated kidney collecting duct  (IAGP)
dilated lateral ventricles  (IAGP)
dilated pancreatic duct  (IAGP)
dilated proximal convoluted tubules  (IAGP)
dilated renal tubules  (IAGP)
dilated third ventricle  (IAGP)
disproportionate dwarf  (IAGP)
dissociated hepatocytes  (IAGP)
distended abdomen  (IAGP)
domed cranium  (IAGP)
double outlet right ventricle  (IAGP)
edema  (IAGP)
embryonic lethality during organogenesis  (IAGP)
embryonic lethality during organogenesis, incomplete penetrance  (IAGP)
enlarged kidney  (IAGP)
enlarged pancreas  (IAGP)
exocrine pancreas atrophy  (IAGP)
failure of atrioventricular cushion closure  (IAGP)
heart left ventricle hypertrophy  (IAGP)
heart right ventricle hypertrophy  (IEA)
hemopericardium  (IAGP)
hemorrhage  (IAGP)
hydrocephaly  (IAGP)
hydrops fetalis  (IAGP)
impaired osteoblast differentiation  (IAGP)
increased activity of parathyroid  (IAGP)
increased blood urea nitrogen level  (IAGP)
increased cell proliferation  (IAGP)
increased circulating cholesterol level  (IAGP)
increased circulating creatinine level  (IAGP)
increased circulating parathyroid hormone level  (IAGP)
increased circulating phosphate level  (IAGP)
increased fatty acid oxidation  (IAGP)
increased heart weight  (IAGP)
increased kidney apoptosis  (IAGP)
increased kidney cell proliferation  (IAGP)
increased kidney epithelial cell primary cilium length  (IAGP)
increased kidney weight  (IAGP)
increased neutrophil cell number  (IEA)
increased osteoblast proliferation  (IAGP)
increased renal hamartoma incidence  (IAGP)
increased renal tubule apoptosis  (IAGP)
infertility  (IAGP)
kidney cortex cyst  (IAGP)
kidney cyst  (IAGP)
kidney failure  (IAGP)
kidney inflammation  (IAGP)
kidney medulla cyst  (IAGP)
lethality throughout fetal growth and development, complete penetrance  (IAGP)
lethality throughout fetal growth and development, incomplete penetrance  (IAGP)
lethality, complete penetrance  (IAGP)
liver cyst  (IAGP)
malocclusion  (IAGP)
maxilla hypoplasia  (IAGP)
micrognathia  (IEA)
nasal bone hypoplasia  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
no abnormal phenotype detected  (IAGP)
oxidative stress  (IAGP)
pale kidney  (IAGP)
pallor  (IAGP)
pancreas cyst  (IAGP)
pancreas fibrosis  (IAGP)
pancreas lipomatosis  (IAGP)
perinatal lethality  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
perinatal lethality, incomplete penetrance  (IAGP)
polycystic kidney  (IAGP)
polyhydramnios  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature cranial synchondrosis closure  (IAGP)
premature death  (IAGP)
premature presphenoid synchondrosis closure  (IAGP)
premature sphenooccipital synchondrosis closure  (IAGP)
prenatal lethality, complete penetrance  (IAGP)
prenatal lethality, incomplete penetrance  (IAGP)
preweaning lethality, complete penetrance  (IEA)
pulmonary hypoplasia  (IAGP)
renal fibrosis  (IAGP)
renal interstitial fibrosis  (IAGP)
respiratory distress  (IAGP)
respiratory failure  (IAGP)
short femur  (IAGP)
short frontal bone  (IAGP)
short mandible  (IAGP)
short maxilla  (IAGP)
short nasal bone  (IAGP)
short premaxilla  (IAGP)
short presphenoid bone  (IAGP)
short snout  (IAGP)
skin edema  (IAGP)
slow postnatal weight gain  (IAGP)
small lung  (IAGP)
spina bifida occulta  (IAGP)
thick myocardium  (IAGP)
thin myocardium  (IAGP)
uremia  (IAGP)
ventricular septal defect  (IAGP)
weight loss  (IAGP)
References

Additional References at PubMed
PMID:1349580   PMID:7661851   PMID:8661056   PMID:8796859   PMID:8828041   PMID:9107672   PMID:9140045   PMID:9263671   PMID:9326937   PMID:9350642   PMID:9568711   PMID:9922404  
PMID:9988267   PMID:10193792   PMID:10213389   PMID:10349636   PMID:10547347   PMID:10655152   PMID:10677526   PMID:10770959   PMID:10781953   PMID:11042159   PMID:11063721   PMID:11076861  
PMID:11593033   PMID:11689485   PMID:11818962   PMID:11901144   PMID:11912216   PMID:11919560   PMID:12007403   PMID:12079289   PMID:12095915   PMID:12140187   PMID:12239239   PMID:12477932  
PMID:12514735   PMID:12819240   PMID:12840011   PMID:12888616   PMID:12946628   PMID:14600027   PMID:14610273   PMID:15087466   PMID:15192707   PMID:15226823   PMID:15466861   PMID:15483558  
PMID:15496422   PMID:15545994   PMID:15548533   PMID:15579506   PMID:15582152   PMID:15761494   PMID:15782199   PMID:15858826   PMID:16107561   PMID:16141072   PMID:16141073   PMID:16282979  
PMID:16291790   PMID:16301212   PMID:16311606   PMID:16316413   PMID:16319116   PMID:16400024   PMID:16449663   PMID:16472605   PMID:16537572   PMID:16565258   PMID:16567633   PMID:16602821  
PMID:16790429   PMID:16805797   PMID:16905538   PMID:16931520   PMID:17082250   PMID:17108316   PMID:17251353   PMID:17475819   PMID:17575307   PMID:17656674   PMID:17671167   PMID:17928412  
PMID:17932118   PMID:17965720   PMID:17980165   PMID:18003909   PMID:18064029   PMID:18172001   PMID:18263604   PMID:18263686   PMID:18285569   PMID:18287012   PMID:18321855   PMID:18356167  
PMID:18385665   PMID:18566106   PMID:18579360   PMID:18652813   PMID:18679710   PMID:18776127   PMID:18845692   PMID:18974761   PMID:19145237   PMID:19158352   PMID:19255143   PMID:19264154  
PMID:19321600   PMID:19322198   PMID:19342421   PMID:19367327   PMID:19401297   PMID:19491093   PMID:19766642   PMID:19774080   PMID:19833899   PMID:19834762   PMID:19879844   PMID:19887454  
PMID:19945952   PMID:19959710   PMID:19966229   PMID:20053665   PMID:20075061   PMID:20139063   PMID:20181743   PMID:20215348   PMID:20375015   PMID:20388565   PMID:20549648   PMID:20554900  
PMID:20562878   PMID:20705705   PMID:20808796   PMID:20843830   PMID:20852388   PMID:20856231   PMID:20856870   PMID:20862291   PMID:20923779   PMID:21041232   PMID:21151991   PMID:21262823  
PMID:21267068   PMID:21345977   PMID:21381034   PMID:21389971   PMID:21454365   PMID:21465620   PMID:21518438   PMID:21518865   PMID:21565611   PMID:21642537   PMID:21821671   PMID:21865467  
PMID:21900881   PMID:22025716   PMID:22338085   PMID:22560297   PMID:22570239   PMID:22582392   PMID:22675472   PMID:22677559   PMID:22725947   PMID:22795130   PMID:22832196   PMID:22835934  
PMID:22859406   PMID:23001567   PMID:23029375   PMID:23129748   PMID:23138483   PMID:23152903   PMID:23209428   PMID:23236168   PMID:23375831   PMID:23390129   PMID:23390131   PMID:23439951  
PMID:23466997   PMID:23524344   PMID:23541637   PMID:23778143   PMID:23784065   PMID:23858461   PMID:23892607   PMID:23933588   PMID:24039875   PMID:24071006   PMID:24153433   PMID:24158982  
PMID:24193408   PMID:24194600   PMID:24203696   PMID:24235270   PMID:24268313   PMID:24385601   PMID:24429399   PMID:24459142   PMID:24472557   PMID:24559508   PMID:24594709   PMID:24618832  
PMID:24700869   PMID:24767998   PMID:24767999   PMID:24854278   PMID:24939912   PMID:24951251   PMID:24952961   PMID:24958103   PMID:24994926   PMID:25120220   PMID:25139670   PMID:25139996  
PMID:25143454   PMID:25145933   PMID:25234309   PMID:25361818   PMID:25365220   PMID:25405894   PMID:25474361   PMID:25492927   PMID:25503729   PMID:25531116   PMID:25573755   PMID:25574838  
PMID:25715395   PMID:25759386   PMID:25807483   PMID:25877301   PMID:25888683   PMID:25922073   PMID:25947155   PMID:25961459   PMID:25999403   PMID:26038530   PMID:26110849   PMID:26245976  
PMID:26289599   PMID:26391272   PMID:26538633   PMID:26677864   PMID:26739494   PMID:26741910   PMID:26764208   PMID:26797128   PMID:26931735   PMID:27002738   PMID:27020852   PMID:27077126  
PMID:27179075   PMID:27272319   PMID:27475230   PMID:27480124   PMID:27488998   PMID:27505895   PMID:27560828   PMID:27582005   PMID:27591083   PMID:28007903   PMID:28077374   PMID:28084409  
PMID:28104302   PMID:28132887   PMID:28154160   PMID:28205547   PMID:28450740   PMID:28604386   PMID:28615245   PMID:28701314   PMID:28747357   PMID:28800037   PMID:28826940   PMID:28887310  
PMID:28903946   PMID:28993480   PMID:29021226   PMID:29074972   PMID:29107072   PMID:29202470   PMID:29273751   PMID:29357432   PMID:29401581   PMID:29443690   PMID:29463793   PMID:29483507  
PMID:29513071   PMID:29716997   PMID:29717938   PMID:29767557   PMID:29875161   PMID:29891559   PMID:29931260   PMID:30042193   PMID:30209078   PMID:30280600   PMID:30332302   PMID:30372813  
PMID:30388220   PMID:30480096   PMID:30692602   PMID:30760828   PMID:30799240   PMID:30818997   PMID:30872773   PMID:30952430   PMID:31038742   PMID:31059522   PMID:31141402   PMID:31157564  
PMID:31220931   PMID:31260458   PMID:31475747   PMID:31570523   PMID:31601454   PMID:31625572   PMID:31631001   PMID:31757932   PMID:31773180   PMID:31808745   PMID:31937827   PMID:31990681  
PMID:32015419   PMID:32239723   PMID:32300065   PMID:32592332   PMID:32651191   PMID:32724471   PMID:32727915   PMID:32859916   PMID:32949996   PMID:33065236   PMID:33106477   PMID:33122431  
PMID:33639177   PMID:33737325   PMID:33852874   PMID:33886581   PMID:34199520   PMID:34324238   PMID:34611276  


Genomics

Comparative Map Data
Pkd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,767,657 - 24,815,488 (+)NCBIGRCm39mm39
GRCm39 Ensembl1724,768,808 - 24,815,482 (+)Ensembl
GRCm381724,548,689 - 24,596,514 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,549,834 - 24,596,508 (+)EnsemblGRCm38mm10GRCm38
MGSCv371724,686,895 - 24,733,459 (+)NCBIGRCm37mm9NCBIm37
MGSCv361724,277,550 - 24,324,083 (+)NCBImm8
Celera1725,067,435 - 25,114,509 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.4NCBI
PKD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl162,088,708 - 2,135,898 (-)EnsemblGRCh38hg38GRCh38
GRCh38162,088,708 - 2,135,898 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37162,138,709 - 2,185,899 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36162,078,712 - 2,125,900 (-)NCBINCBI36hg18NCBI36
Build 34162,078,711 - 2,125,900NCBI
Celera162,350,824 - 2,400,282 (-)NCBI
Cytogenetic Map16p13.3NCBI
HuRef162,063,439 - 2,112,133 (-)NCBIHuRef
CHM1_1162,138,626 - 2,185,837 (-)NCBICHM1_1
Pkd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21013,573,779 - 13,621,138 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1013,573,021 - 13,621,128 (+)Ensembl
Rnor_6.01013,914,057 - 13,962,008 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1013,915,214 - 13,962,008 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01013,731,035 - 13,778,993 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41013,801,445 - 13,848,212 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11013,801,471 - 13,848,236 (+)NCBI
Celera1013,254,601 - 13,301,131 (+)NCBICelera
Cytogenetic Map10q12NCBI
Pkd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544215,145,640 - 15,178,377 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544215,132,555 - 15,178,377 (+)NCBIChiLan1.0ChiLan1.0
LOC100972297
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1162,176,778 - 2,185,337 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v016604,927 - 1,697,831 (+)NCBIMhudiblu_PPA_v0panPan3
PKD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1638,811,051 - 38,865,503 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl638,837,964 - 38,865,503 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha640,062,677 - 40,104,408 (+)NCBI
ROS_Cfam_1.0639,132,038 - 39,173,761 (+)NCBI
ROS_Cfam_1.0 Ensembl639,132,038 - 39,173,760 (+)Ensembl
UMICH_Zoey_3.1638,816,853 - 38,858,566 (+)NCBI
UNSW_CanFamBas_1.0638,789,176 - 38,830,884 (+)NCBI
UU_Cfam_GSD_1.0639,267,946 - 39,309,679 (+)NCBI
Pkd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344104,751,303 - 104,783,237 (-)NCBI
SpeTri2.0NW_0049366941,923,383 - 1,958,160 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PKD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl339,849,609 - 39,899,455 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1339,849,579 - 39,899,455 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2342,282,099 - 42,331,966 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PKD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.151,985,165 - 2,031,518 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl51,983,632 - 2,015,551 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606829,031,552 - 29,079,001 (+)NCBIVero_WHO_p1.0
Pkd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624913118,520 - 166,939 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
Pkd1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381724,592,613 - 24,593,290UniSTSGRCm38
MGSCv371724,729,558 - 24,730,235UniSTSGRCm37
Celera1725,110,600 - 25,111,277UniSTS
Cytogenetic Map17A3.3UniSTS
cM Map1710.4UniSTS
Pkd1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381724,595,694 - 24,595,804UniSTSGRCm38
MGSCv371724,732,639 - 24,732,749UniSTSGRCm37
Celera1725,113,689 - 25,113,799UniSTS
Cytogenetic Map17A3.3UniSTS
Pkd1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17A3.3UniSTS
Pkd1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381724,564,169 - 24,565,545UniSTSGRCm38
Celera1725,081,989 - 25,083,365UniSTS
Cytogenetic Map17A3.3UniSTS
Tsc2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381724,596,587 - 24,596,891UniSTSGRCm38
MGSCv371724,733,532 - 24,733,836UniSTSGRCm37
Celera1725,114,582 - 25,114,886UniSTS
Cytogenetic Map17A3.3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357902Obq19_mobesity QTL 19 (mouse)Not determined17125443244Mouse
12910982Pifs2_mpeptide-induced fatal syndrome 2 (mouse)17125970523Mouse
1357743Lith3_mlithogenic gene 3 (mouse)Not determined17125975624Mouse
1300613Pcyts4_mplasmacytoma susceptibility 4 (mouse)Not determined17126862710Mouse
1301615Cfld3_mcystic fibrosis lung disease 3 (mouse)Not determined17126862710Mouse
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17128979566Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17128979566Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17128979566Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17130809908Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17312791337128037Mouse
1357680Idd23_minsulin dependent diabetes susceptibility 23 (mouse)Not determined17392461526182159Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17392461548559063Mouse
1301327Lmr7_mleishmaniasis resistance 7 (mouse)Not determined17480447727496965Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined480447745359340Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17480447746158776Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17480447747574740Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined480447765330362Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17667496240674962Mouse
4141608Phl1_mprogressive hearing loss 1 (mouse)Not determined17765701129268449Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17836594042366175Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17836594042366175Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined17986241186688972Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171065914544659245Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1098759739053168Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1166699745667145Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171177921045779210Mouse
4142507Obrq13_mobesity resistance QTL 13 (mouse)Not determined1197944224857795Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171206732483054339Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171223281346232813Mouse
1558807Ceat1_mchronic experimental autoimmune thyroiditis 1 (mouse)Not determined171241779526182159Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171242798746427987Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171390439847904522Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171484267848842786Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171484267848842786Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171484267848842786Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171484267848842786Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171660074750600869Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171660074750600869Mouse
1301505Tir1_mtrypanosome infection response 1 (mouse)Not determined171660074750600869Mouse
1302038Radpf1_mradiation pulmonary fibrosis 1 (mouse)Not determined171661519333600869Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171681096950811104Mouse
1302042Acsns3_mAngiostrongylus costaricensis nematode susceptibility 3 (mouse)Not determined171724323451243371Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171724323451243371Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171724323451243371Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171724323451243371Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171724323451243371Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171795643651959238Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171819938152202007Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171820316552205351Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171883413352834133Mouse
12910769Rtmq1_mrenal tumor modifier QTL 1 (mouse)172268105525502498Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172430185958301973Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:473
Count of miRNA genes:298
Interacting mature miRNAs:355
Transcripts:ENSMUST00000035565
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_013630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC132367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF333927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY332760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB805513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U38921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U70209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U82557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000035565   ⟹   ENSMUSP00000049296
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1724,768,924 - 24,815,482 (+)Ensembl
GRCm38.p6 Ensembl1724,549,950 - 24,596,508 (+)Ensembl
RefSeq Acc Id: ENSMUST00000226178
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1724,798,134 - 24,802,337 (+)Ensembl
GRCm38.p6 Ensembl1724,579,160 - 24,583,363 (+)Ensembl
RefSeq Acc Id: ENSMUST00000226883   ⟹   ENSMUSP00000154668
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1724,797,000 - 24,799,409 (+)Ensembl
GRCm38.p6 Ensembl1724,578,026 - 24,580,435 (+)Ensembl
RefSeq Acc Id: ENSMUST00000227058   ⟹   ENSMUSP00000153867
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1724,810,168 - 24,812,477 (+)Ensembl
GRCm38.p6 Ensembl1724,591,194 - 24,593,503 (+)Ensembl
RefSeq Acc Id: ENSMUST00000227107   ⟹   ENSMUSP00000154792
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1724,795,518 - 24,815,481 (+)Ensembl
GRCm38.p6 Ensembl1724,576,544 - 24,596,507 (+)Ensembl
RefSeq Acc Id: ENSMUST00000227836   ⟹   ENSMUSP00000154626
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1724,804,820 - 24,806,716 (+)Ensembl
GRCm38.p6 Ensembl1724,585,846 - 24,587,742 (+)Ensembl
RefSeq Acc Id: ENSMUST00000228550   ⟹   ENSMUSP00000154062
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1724,768,808 - 24,769,857 (+)Ensembl
GRCm38.p6 Ensembl1724,549,834 - 24,550,883 (+)Ensembl
RefSeq Acc Id: ENSMUST00000228581   ⟹   ENSMUSP00000154141
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1724,810,378 - 24,812,222 (+)Ensembl
GRCm38.p6 Ensembl1724,591,404 - 24,593,248 (+)Ensembl
RefSeq Acc Id: ENSMUST00000228745   ⟹   ENSMUSP00000153873
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1724,787,310 - 24,788,329 (+)Ensembl
GRCm38.p6 Ensembl1724,568,336 - 24,569,355 (+)Ensembl
RefSeq Acc Id: ENSMUST00000228750
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1724,806,593 - 24,810,390 (+)Ensembl
GRCm38.p6 Ensembl1724,587,619 - 24,591,416 (+)Ensembl
RefSeq Acc Id: NM_013630   ⟹   NP_038658
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391724,768,924 - 24,815,488 (+)NCBI
GRCm381724,549,950 - 24,596,514 (+)ENTREZGENE
MGSCv371724,686,895 - 24,733,459 (+)RGD
Celera1725,067,435 - 25,114,509 (+)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006523841   ⟹   XP_006523904
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391724,767,657 - 24,815,457 (+)NCBI
GRCm381724,548,689 - 24,596,483 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006523842   ⟹   XP_006523905
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391724,767,657 - 24,815,457 (+)NCBI
GRCm381724,548,689 - 24,596,483 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006523843   ⟹   XP_006523906
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391724,767,657 - 24,815,457 (+)NCBI
GRCm381724,548,689 - 24,596,483 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006523844   ⟹   XP_006523907
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391724,767,657 - 24,815,457 (+)NCBI
GRCm381724,548,689 - 24,596,483 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006523845   ⟹   XP_006523908
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391724,767,657 - 24,815,457 (+)NCBI
GRCm381724,548,689 - 24,596,483 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006523846   ⟹   XP_006523909
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391724,767,657 - 24,815,457 (+)NCBI
GRCm381724,548,689 - 24,596,483 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006523847   ⟹   XP_006523910
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391724,767,657 - 24,815,457 (+)NCBI
GRCm381724,548,689 - 24,596,483 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006523852   ⟹   XP_006523915
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391724,767,657 - 24,815,457 (+)NCBI
GRCm381724,548,689 - 24,596,483 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249577   ⟹   XP_030105437
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391724,767,657 - 24,815,457 (+)NCBI
GRCm381724,548,689 - 24,596,483 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249578   ⟹   XP_030105438
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391724,767,657 - 24,815,457 (+)NCBI
GRCm381724,548,689 - 24,596,483 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249579   ⟹   XP_030105439
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391724,767,657 - 24,815,457 (+)NCBI
GRCm381724,548,689 - 24,596,483 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249580   ⟹   XP_030105440
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391724,767,657 - 24,815,457 (+)NCBI
GRCm381724,548,689 - 24,596,483 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249581   ⟹   XP_030105441
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391724,767,657 - 24,815,457 (+)NCBI
GRCm381724,548,689 - 24,596,483 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249582   ⟹   XP_030105442
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391724,767,657 - 24,815,457 (+)NCBI
GRCm381724,548,689 - 24,596,483 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249583   ⟹   XP_030105443
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391724,767,657 - 24,815,457 (+)NCBI
GRCm381724,548,689 - 24,596,483 (+)NCBI
Sequence: