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ONTOLOGY REPORT - ANNOTATIONS


Term:skeletal system development
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Accession:GO:0001501 term browser browse the term
Definition:The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton).
Synonyms:exact_synonym: skeletal development


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skeletal system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07021591.1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 Ensembl chr13:80,125,391...80,125,825 JBrowse link
G Acan aggrecan involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:140,762,758...140,824,441
Ensembl chr 1:140,762,758...140,824,441
JBrowse link
G Acd ACD, shelterin complex subunit and telomerase recruitment factor ISO MGI:1856658 (MGI:3526782|PMID:15537664) RGD PMID:15537664 MGI:3526782 NCBI chr19:37,665,289...37,668,043
Ensembl chr19:37,665,296...37,667,987
JBrowse link
G Acp2 acid phosphatase 2, lysosomal ISO MGI:2180084 (MGI:894905|PMID:9228031) RGD PMID:9228031 MGI:894905 NCBI chr 3:80,020,346...80,030,365
Ensembl chr 3:80,021,440...80,030,363
JBrowse link
G Acvr2b activin A receptor type 2B ISO MGI:1857709|MGI:98728 (MGI:3695190|PMID:16845371) RGD PMID:16845371 MGI:3695190 NCBI chr 8:128,087,308...128,126,776
Ensembl chr 8:128,087,345...128,118,746
JBrowse link
G Alx1 ALX homeobox 1 TAS RGD PMID:12929931 RGD:1358475 NCBI chr 7:44,751,865...44,771,458
Ensembl chr 7:44,751,873...44,771,458
JBrowse link
G Ash1l ASH1 like histone lysine methyltransferase ISO MGI:3852878 (MGI:5700615|PMID:26333994) RGD PMID:26333994 MGI:5700615 NCBI chr 2:188,252,592...188,389,251
Ensembl chr 2:188,253,220...188,389,250
JBrowse link
G Bcan brevican involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:187,359,674...187,373,133
Ensembl chr 2:187,359,677...187,372,657
JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger ISO MGI:1857632 (MGI:65743|PMID:7926765) RGD PMID:7926765 MGI:65743 NCBI chr17:85,360,439...85,370,283
Ensembl chr17:85,364,483...85,368,208
JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO MGI:2654594|MGI:3041440 (MGI:2683812|PMID:14654219), (MGI:3583479|PMID:15936012) RGD PMID:14654219 PMID:15936012 MGI:2683812 MGI:3583479 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Bmp5 bone morphogenetic protein 5 ISO MGI:1857400|MGI:1858106|MGI:2153906|MGI:2153907 (MGI:51561|PMID:1339316) RGD PMID:1339316 MGI:51561 NCBI chr 8:82,669,466...82,950,273
Ensembl chr 8:82,878,941...82,950,273
JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B involved_in ISO (PMID:14523231) RGD PMID:14523231 NCBI chr 2:247,392,195...247,662,026
Ensembl chr 2:247,403,920...247,446,882
JBrowse link
G Bpnt2 3'(2'), 5'-bisphosphate nucleotidase 2 involved_in ISO
IBA
MGI:3810994 (MGI:3809386|PMID:18695242)
PMID:21873635
RGD PMID:18695242, PMID:21873635, PMID:21873635 MGI:3809386, RGD:13792537, RGD:13792537 NCBI chr17:90,191,119...90,218,013
Ensembl chr17:90,188,043...90,218,013
Ensembl chr 5:90,188,043...90,218,013
JBrowse link
G Cacna1s calcium voltage-gated channel subunit alpha1 S ISO MGI:1856326 (MGI:56124|PMID:6501560) RGD PMID:6501560 MGI:56124 NCBI chr13:52,889,570...52,964,558
Ensembl chr13:52,889,737...52,964,155
JBrowse link
G Cdkn1c cyclin-dependent kinase inhibitor 1C ISO MGI:1933758|MGI:3840687 (MGI:3839493|PMID:19276117) RGD PMID:19276117 MGI:3839493 NCBI chr 1:216,661,067...216,663,791
Ensembl chr 1:216,661,080...216,663,721
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 involved_in ISO (PMID:16155193) RGD PMID:16155193 NCBI chr 5:21,769,087...21,952,036
Ensembl chr 5:21,830,882...21,950,696
JBrowse link
G Chrd chordin ISO MGI:2157350 (MGI:2156257|PMID:11784076) RGD PMID:11784076 MGI:2156257 NCBI chr11:83,858,503...83,867,543
Ensembl chr11:83,858,503...83,867,203
JBrowse link
G Clec3b C-type lectin domain family 3, member B ISO MGI:2178555 (MGI:2153334|PMID:11604516) RGD PMID:11604516 MGI:2153334 NCBI chr 8:132,241,016...132,248,066
Ensembl chr 8:132,241,134...132,246,694
JBrowse link
G Col11a2 collagen type XI alpha 2 chain involved_in ISO (PMID:10677296) RGD PMID:10677296 NCBI chr20:3,829,324...3,859,022
Ensembl chr20:3,830,164...3,859,018
JBrowse link
G Col13a1 collagen type XIII alpha 1 chain involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr20:31,456,502...31,598,360
Ensembl chr20:31,456,852...31,598,118
JBrowse link
G Col1a1 collagen type I alpha 1 chain involved_in ISO
IBA
(PMID:14976317), (PMID:1874719), (PMID:8097422)
PMID:21873635
(MGI:65612|PMID:8163675)
RGD PMID:1874719 PMID:8097422 PMID:8163675 PMID:14976317, PMID:21873635, PMID:21873635 MGI:65612, RGD:13792537, RGD:13792537 NCBI chr10:82,745,801...82,762,790
Ensembl chr10:82,745,801...82,762,789
JBrowse link
G Col1a2 collagen type I alpha 2 chain involved_in ISO (PMID:17955022), (PMID:18375391), (PMID:8841196) RGD PMID:8841196 PMID:17955022 PMID:18375391 NCBI chr 4:31,534,225...31,569,152
Ensembl chr 4:31,534,225...31,569,151
JBrowse link
G Col2a1 collagen type II alpha 1 chain involved_in ISO
IBA
(PMID:1429602)
PMID:21873635
RGD PMID:1429602, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 7:139,454,945...139,484,403
Ensembl chr 7:139,455,242...139,483,997
JBrowse link
G Col3a1 collagen type III alpha 1 chain IEP RGD PMID:10373016 RGD:704391 NCBI chr 9:52,023,295...52,059,221
Ensembl chr 9:52,023,295...52,059,217
JBrowse link
G Col5a2 collagen type V alpha 2 chain ISO MGI:2152946 (MGI:70182|PMID:7704020) RGD PMID:7704020 MGI:70182 NCBI chr 9:52,091,088...52,238,735
Ensembl chr 9:52,092,511...52,238,564
JBrowse link
G Col9a1 collagen type IX alpha 1 chain ISO MGI:88469 (MGI:3807836|PMID:18191556) RGD PMID:18191556 MGI:3807836 NCBI chr 9:30,419,001...30,502,307
Ensembl chr 9:30,419,001...30,502,298
JBrowse link
G Comp cartilage oligomeric matrix protein ISO MGI:88465 (MGI:3807836|PMID:18191556) RGD PMID:18191556 MGI:3807836 NCBI chr16:20,798,437...20,807,070
Ensembl chr16:20,798,437...20,807,070
JBrowse link
G Ctnnb1 catenin beta 1 ISO MGI:2148591|MGI:2148594|MGI:2450929 (MGI:3578464|PMID:15866163) RGD PMID:15866163 MGI:3578464 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Dll3 delta like canonical Notch ligand 3 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:10742114)
PMID:11923214
(MGI:2178102|PMID:11923214)
Ensembl
RGD
PMID:10742114 PMID:11923214, PMID:11923214, PMID:11923214 GO_REF:0000107 MGI:2178102, RGD:8554121, RGD:8554121 NCBI chr 1:85,485,875...85,493,683
Ensembl chr 1:85,485,289...85,493,685
JBrowse link
G Edn1 endothelin 1 ISO MGI:1857637 (MGI:65725|PMID:8152482) RGD PMID:8152482 MGI:65725 NCBI chr17:22,136,814...22,143,745
Ensembl chr17:22,137,324...22,143,324
JBrowse link
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 ISO MGI:2183829 (MGI:2179907|PMID:11997520) RGD PMID:11997520 MGI:2179907 NCBI chr 4:98,648,513...98,709,695
Ensembl chr 4:98,648,545...98,709,694
JBrowse link
G Epha2 Eph receptor A2 ISO MGI:2448472 (MGI:1934524|PMID:11287184) RGD PMID:11287184 MGI:1934524 NCBI chr 5:159,845,773...159,874,203
Ensembl chr 5:159,845,774...159,874,206
JBrowse link
G Fam20c FAM20C, golgi associated secretory pathway kinase ISO MGI:2656539|MGI:5428020|MGI:5432377 (MGI:5427766|PMID:22615579), (MGI:5432245|PMID:22732358) RGD PMID:22615579 PMID:22732358 MGI:5427766 MGI:5432245 NCBI chr12:17,913,771...17,972,733
Ensembl chr12:17,913,767...17,972,737
JBrowse link
G Fbn1 fibrillin 1 involved_in ISO (PMID:8188302) RGD PMID:8188302 NCBI chr 3:117,569,708...117,766,160
Ensembl chr 3:117,569,697...117,766,120
JBrowse link
G Fgfrl1 fibroblast growth factor receptor-like 1 ISO MGI:3849002 (MGI:3848851|PMID:19383940) RGD PMID:19383940 MGI:3848851 NCBI chr14:2,020,110...2,032,169
Ensembl chr14:2,018,500...2,032,593
JBrowse link
G Foxc1 forkhead box C1 ISO MGI:1856705|MGI:1857869 (MGI:1261705|PMID:9635428), (MGI:1335260|PMID:10072431), (MGI:53669|PMID:5500588), (MGI:53904|PMID:4784576) RGD PMID:4784576 PMID:5500588 PMID:9635428 PMID:10072431 MGI:1261705 MGI:1335260 MGI:53669 MGI:53904 MGI:63127 NCBI chr17:33,947,501...33,951,484
Ensembl chr17:33,947,506...33,951,484
JBrowse link
G Foxc2 forkhead box C2 ISO MGI:1857740|MGI:97485 (MGI:1338665|PMID:10364424) RGD PMID:10364424 MGI:1338665 NCBI chr19:53,044,379...53,047,081
Ensembl chr19:53,044,379...53,047,081
JBrowse link
G Fst follistatin ISO MGI:2670967 (MGI:5511086|PMID:24019467) RGD PMID:24019467 MGI:5511086 NCBI chr 2:46,537,589...46,544,813
Ensembl chr 2:46,538,700...46,544,457
JBrowse link
G Gdf11 growth differentiation factor 11 ISO MGI:2669209|MGI:2670967 (MGI:5511086|PMID:24019467) RGD PMID:24019467 MGI:5511086 NCBI chr 7:3,306,863...3,315,856
Ensembl chr 7:3,306,863...3,315,856
JBrowse link
G Gdf3 growth differentiation factor 3 involved_in ISO (PMID:19864492) RGD PMID:19864492 NCBI chr 4:155,417,667...155,422,014
Ensembl chr 4:155,417,004...155,421,998
JBrowse link
G Gja5 gap junction protein, alpha 5 ISO MGI:2445466 (MGI:3581374|PMID:15923624) RGD PMID:15923624 MGI:3581374 NCBI chr 2:199,162,745...199,184,942
Ensembl chr 2:199,162,745...199,184,939
JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:1857509 (MGI:85752|PMID:9006072) RGD PMID:9006072 MGI:85752 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gna11 G protein subunit alpha 11 IEA
ISO
GO_REF:0000107
MGI:2151589 (MGI:1276765|PMID:9687499)
Ensembl
RGD
PMID:9687499 GO_REF:0000107 MGI:1276765 NCBI chr 7:11,033,400...11,047,284
Ensembl chr 7:11,033,317...11,047,437
JBrowse link
G Gnaq G protein subunit alpha q IEA
ISO
GO_REF:0000107
MGI:2151661 (MGI:1276765|PMID:9687499)
Ensembl
RGD
PMID:9687499 GO_REF:0000107 MGI:1276765 NCBI chr 1:233,382,778...233,622,584
Ensembl chr 1:233,382,708...233,622,786
JBrowse link
G Gnas GNAS complex locus ISO MGI:3043361 (MGI:3619837|PMID:15797856) RGD PMID:15797856 MGI:3619837 NCBI chr 3:172,374,957...172,434,988
Ensembl chr 3:172,374,957...172,428,483
Ensembl chr 3:172,374,957...172,428,483
JBrowse link
G Hapln1 hyaluronan and proteoglycan link protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:18,354,542...18,419,077
Ensembl chr 2:18,354,542...18,419,071
JBrowse link
G Hapln2 hyaluronan and proteoglycan link protein 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:187,395,104...187,402,076
Ensembl chr 2:187,396,349...187,401,786
JBrowse link
G Hapln3 hyaluronan and proteoglycan link protein 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:140,827,279...140,845,386
Ensembl chr 1:140,827,295...140,835,151
JBrowse link
G Hapln4 hyaluronan and proteoglycan link protein 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr16:21,081,377...21,089,508
Ensembl chr16:21,081,377...21,089,508
JBrowse link
G Hdac4 histone deacetylase 4 ISO MGI:3525071 (MGI:3513625|PMID:15537544) RGD PMID:15537544 MGI:3513625 NCBI chr 9:99,052,945...99,299,715
Ensembl chr 9:99,057,089...99,299,715
JBrowse link
G Hes7 hes family bHLH transcription factor 7 ISO MGI:2652222 (MGI:2152470|PMID:11641270) RGD PMID:11641270 MGI:2152470 NCBI chr10:55,704,485...55,710,523
Ensembl chr10:55,707,164...55,709,687
JBrowse link
G Hexa hexosaminidase subunit alpha ISO MGI:96074 (MGI:83770|PMID:8896570), (MGI:894634|PMID:9184660) RGD PMID:8896570 PMID:9184660 MGI:83770 MGI:894634 NCBI chr 8:64,325,435...64,350,775
Ensembl chr 8:64,325,435...64,350,773
JBrowse link
G Hexb hexosaminidase subunit beta involved_in IEA
ISO
GO_REF:0000107
MGI:96073 (MGI:83770|PMID:8896570), (MGI:894634|PMID:9184660)
Ensembl
RGD
PMID:8896570 PMID:9184660 GO_REF:0000107 MGI:83770 MGI:894634 NCBI chr 2:27,983,925...28,003,260
Ensembl chr 2:27,984,117...28,003,186
JBrowse link
G Hoxa10 homeobox A10 ISO MGI:96192|MGI:96202 (MGI:2667742|PMID:12869760) RGD PMID:12869760 MGI:2667742 NCBI chr 4:82,285,940...82,295,892
Ensembl chr 4:82,285,528...82,295,470
JBrowse link
G Hoxa11 homeobox A11 ISO MGI:1934269|MGI:96193|MGI:96203 (MGI:2667742|PMID:12869760), (MGI:73938|PMID:7596412) RGD PMID:7596412 PMID:12869760 MGI:2667742 MGI:73938 NCBI chr 4:82,296,888...82,301,419
Ensembl chr 4:82,298,152...82,300,503
Ensembl chr 4:82,298,152...82,300,503
JBrowse link
G Hoxa5 homeo box A5 ISO MGI:2150397 (MGI:2177895|PMID:11900462) RGD PMID:11900462 MGI:2177895
G Hoxc10 homeo box C10 ISO MGI:96171|MGI:96202 (MGI:2667742|PMID:12869760) RGD PMID:12869760 MGI:2667742 NCBI chr 7:144,577,578...144,582,802
Ensembl chr 7:144,577,465...144,582,622
JBrowse link
G Hoxc11 homeobox C11 ISO MGI:96172|MGI:96203 (MGI:2667742|PMID:12869760) RGD PMID:12869760 MGI:2667742 NCBI chr 7:144,565,392...144,568,580
Ensembl chr 7:144,565,392...144,567,580
JBrowse link
G Hoxc4 homeo box C4 ISO MGI:1857570|MGI:2150683 (MGI:79121|PMID:8626021), (MGI:81673|PMID:8660891) RGD PMID:8626021 PMID:8660891 MGI:79121 MGI:81673 NCBI chr 7:144,646,605...144,652,589
Ensembl chr 7:144,647,587...144,650,129
JBrowse link
G Hoxd10 homeo box D10 ISO MGI:1934269|MGI:96171|MGI:96192 (MGI:1101279|PMID:9409668), (MGI:2667742|PMID:12869760) RGD PMID:9409668 PMID:12869760 MGI:1101279 MGI:2667742 NCBI chr 3:61,614,133...61,617,342
Ensembl chr 3:61,613,774...61,617,367
JBrowse link
G Hoxd11 homeobox D11 ISO MGI:1857963|MGI:96172|MGI:96193 (MGI:2667742|PMID:12869760), (MGI:67779|PMID:7925020) RGD PMID:7925020 PMID:12869760 MGI:2667742 MGI:67779 NCBI chr 3:61,604,256...61,606,874
Ensembl chr 3:61,604,672...61,606,400
JBrowse link
G Hoxd12 homeo box D12 ISO MGI:1857964 (MGI:80097|PMID:8620844) RGD PMID:8620844 MGI:80097 NCBI chr 3:61,597,382...61,598,503
Ensembl chr 3:61,597,382...61,598,503
JBrowse link
G Hoxd13 homeo box D13 ISO MGI:1857871|MGI:2151805 (MGI:63627|PMID:8106170), (MGI:80097|PMID:8620844) RGD PMID:8106170 PMID:8620844 MGI:63627 MGI:80097 NCBI chr 3:61,590,376...61,593,692
Ensembl chr 3:61,590,376...61,593,692
JBrowse link
G Hspb11 heat shock protein family B (small), member 11 ISO MGI:4432759|MGI:5426875 (MGI:5426280|PMID:22595669) RGD PMID:22595669 MGI:5426280 NCBI chr 5:126,856,128...126,882,913
Ensembl chr 5:126,856,705...126,882,909
JBrowse link
G Ift80 intraflagellar transport 80 ISO MGI:3689350|MGI:5818514 (MGI:5807019|PMID:26996322) RGD PMID:26996322 MGI:5807019 NCBI chr 2:165,506,878...165,600,748
Ensembl chr 2:165,505,810...165,600,748
JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in ISO (PMID:21537345)
MGI:2176264|MGI:3609381 (MGI:3608181|PMID:16278811)
RGD PMID:16278811 PMID:21537345 MGI:3608181 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
JBrowse link
G Jag2 jagged canonical Notch ligand 2 involved_in IEA
ISO
GO_REF:0000107
MGI:2657215 (MGI:3578593|PMID:15721140)
Ensembl
RGD
PMID:15721140 GO_REF:0000107 MGI:3578593 NCBI chr 6:137,711,144...137,733,331
Ensembl chr 6:137,711,155...137,733,026
JBrowse link
G Lgals3 galectin 3 ISO MGI:97011 (MGI:3589495|PMID:15800063) RGD PMID:15800063 MGI:3589495 NCBI chr15:24,153,602...24,165,537
Ensembl chr15:24,141,651...24,165,537
JBrowse link
G Ltbp3 latent transforming growth factor beta binding protein 3 ISO MGI:2180017 (MGI:2389565|PMID:12379497) RGD PMID:12379497 MGI:2389565 NCBI chr 1:221,099,155...221,116,096
Ensembl chr 1:221,099,998...221,116,096
JBrowse link
G Mir140 microRNA 140 ISO MGI:4461000 (MGI:4454342|PMID:20466812) RGD PMID:20466812 MGI:4454342 NCBI chr19:39,608,951...39,609,049
Ensembl chr19:39,608,951...39,609,049
JBrowse link
G Mmp14 matrix metallopeptidase 14 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:33,074,441...33,083,666
Ensembl chr15:33,074,441...33,083,655
JBrowse link
G Mmp16 matrix metallopeptidase 16 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 5:31,568,344...31,818,368
Ensembl chr 5:31,568,419...31,810,484
JBrowse link
G Mmp9 matrix metallopeptidase 9 involved_in IEA
ISO
GO_REF:0000107
MGI:1932294|MGI:96778 (MGI:3589495|PMID:15800063)
Ensembl
RGD
PMID:15800063 GO_REF:0000107 MGI:3589495 NCBI chr 3:161,413,410...161,421,473
Ensembl chr 3:161,413,298...161,421,520
JBrowse link
G Ncan neurocan involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr16:21,050,243...21,076,707
Ensembl chr16:21,050,243...21,076,707
JBrowse link
G Nkx3-2 NK3 homeobox 2 ISO MGI:1931319 (MGI:3505761|PMID:11523821) RGD PMID:11523821 MGI:3505761 NCBI chr14:73,813,531...73,818,489
Ensembl chr14:73,813,528...73,815,757
JBrowse link
G Nog noggin ISO MGI:1862000 (MGI:2156257|PMID:11784076) RGD PMID:11784076 MGI:2156257 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link
G Notch1 notch receptor 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Notch2 notch receptor 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:200,187,184...200,320,403
Ensembl chr 2:200,187,179...200,320,215
JBrowse link
G Npr3 natriuretic peptide receptor 3 involved_in ISS
ISO
GO_REF:0000024
(MGI:1339924|PMID:10377427)
UniProt
RGD
PMID:10377427 GO_REF:0000024 MGI:1339924 NCBI chr 2:61,883,946...61,950,291
Ensembl chr 2:61,888,950...61,949,926
JBrowse link
G Pax1 paired box 1 ISO MGI:1347481|MGI:1856222|MGI:1857560 (MGI:1338665|PMID:10364424), (MGI:2177895|PMID:11900462) RGD PMID:10364424 PMID:11900462 MGI:1338665 MGI:2177895 NCBI chr 3:141,577,124...141,589,849
Ensembl chr 3:141,577,504...141,589,849
JBrowse link
G Pitx1 paired-like homeodomain 1 ISO MGI:1857659 (MGI:1333095|PMID:10101115) RGD PMID:10101115 MGI:1333095 NCBI chr17:8,873,184...8,884,428
Ensembl chr17:8,878,270...8,884,423
JBrowse link
G Pkdcc protein kinase domain containing, cytoplasmic involved_in ISO (PMID:30478137)
MGI:5014347 (MGI:5013998|PMID:21553379)
RGD PMID:21553379 PMID:30478137 MGI:5013998 NCBI chr 6:6,427,657...6,436,974
Ensembl chr 6:6,427,657...6,436,974
JBrowse link
G Ptger2 prostaglandin E receptor 2 NAS RGD PMID:9440134 RGD:737645 NCBI chr15:19,336,029...19,349,759
Ensembl chr15:19,338,175...19,350,210
JBrowse link
G Pth1r parathyroid hormone 1 receptor ISO MGI:2154519 (MGI:2153596|PMID:11606467), (MGI:82059|PMID:8662561) RGD PMID:8662561 PMID:11606467 MGI:2153596 MGI:82059 NCBI chr 8:118,984,531...119,012,803
Ensembl chr 8:118,988,053...119,012,671
JBrowse link
G Pthlh parathyroid hormone-like hormone involved_in ISO (PMID:9008714)
MGI:2154515 (MGI:2153596|PMID:11606467), (MGI:64969|PMID:8314082)
RGD PMID:8314082 PMID:9008714 PMID:11606467 MGI:2153596 MGI:64969 NCBI chr 4:181,663,425...181,674,181 JBrowse link
G Rai1 retinoic acid induced 1 ISO MGI:3521985|MGI:3521986|MGI:3526160 (MGI:3577118|PMID:15746153), (MGI:3757915|PMID:17273973) RGD PMID:15746153 PMID:17273973 MGI:3577118 MGI:3757915 NCBI chr10:46,511,271...46,571,591
Ensembl chr10:46,511,271...46,571,583
JBrowse link
G Rassf2 Ras association domain family member 2 involved_in IEA
ISO
GO_REF:0000107
MGI:5314787 (MGI:5314467|PMID:22227519)
Ensembl
RGD
PMID:22227519 GO_REF:0000107 MGI:5314467 NCBI chr 3:124,574,088...124,610,267
Ensembl chr 3:124,575,621...124,610,267
JBrowse link
G Recql4 RecQ like helicase 4 ISO MGI:2677314 (MGI:3623183|PMID:16600186) RGD PMID:16600186 MGI:3623183 NCBI chr 7:117,765,892...117,773,128
Ensembl chr 7:117,763,783...117,773,134
JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 ISO MGI:2386954 (MGI:1353865|PMID:10700181) RGD PMID:10700181 MGI:1353865 NCBI chr17:11,953,552...12,134,386
Ensembl chr17:11,953,552...12,134,386
JBrowse link
G Rpl38 ribosomal protein L38 ISO MGI:1859977|MGI:1861228|MGI:2447994 (MGI:5014009|PMID:21529712) RGD PMID:21529712 MGI:5014009 NCBI chr10:103,198,424...103,202,059
Ensembl chr 2:199,479,007...199,479,309
JBrowse link
G Runx1 RUNX family transcription factor 1 ISO MGI:2668479 (MGI:3528197|PMID:15389629) RGD PMID:15389629 MGI:3528197 NCBI chr11:32,765,147...33,003,061
Ensembl chr11:32,769,165...33,003,021
JBrowse link
G Runx2 RUNX family transcription factor 2 ISO MGI:2176465|MGI:2176466 (MGI:2683810|PMID:14688224), (MGI:3628871|PMID:15050892) RGD PMID:14688224 PMID:15050892 MGI:2683810 MGI:3628871 NCBI chr 9:18,564,743...18,773,092
Ensembl chr 9:18,564,927...18,773,092
JBrowse link
G Serp1 stress-associated endoplasmic reticulum protein 1 ISO MGI:3652355 (MGI:3619104|PMID:16415102) RGD PMID:16415102 MGI:3619104 NCBI chr 2:148,718,279...148,722,263
Ensembl chr 2:148,718,280...148,722,263
JBrowse link
G Sh3pxd2b SH3 and PX domains 2B involved_in ISO (PMID:20137777)
(MGI:4439252|PMID:20137777)
RGD PMID:20137777 MGI:4439252 NCBI chr10:17,209,152...17,296,449
Ensembl chr10:17,209,212...17,291,876
JBrowse link
G Smad3 SMAD family member 3 ISO MGI:108051 (MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:3618021 NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349
JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 ISO MGI:3575405 (MGI:3715574|PMID:17591962), (MGI:5584216|PMID:24585429) RGD PMID:17591962 PMID:24585429 MGI:3715574 MGI:5584216 NCBI chr19:38,237,963...38,321,572
Ensembl chr19:38,237,965...38,321,528
JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
ISO
GO_REF:0000024
(MGI:5285157|PMID:20596238)
UniProt
RGD
PMID:20596238 GO_REF:0000024 MGI:5285157 NCBI chr 6:46,629,967...46,631,988
Ensembl chr 6:46,629,974...46,631,983
JBrowse link
G Sox4 SRY-box transcription factor 4 ISO (MGI:5285157|PMID:20596238) RGD PMID:20596238 MGI:5285157 NCBI chr17:37,615,022...37,619,728 JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO
ISS
(PMID:8640233)
GO_REF:0000024
RGD
UniProt
PMID:8640233 GO_REF:0000024 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISO
ISS
(PMID:9207801)
GO_REF:0000024
RGD
UniProt
PMID:9207801 GO_REF:0000024 NCBI chr12:42,479,518...42,494,588
Ensembl chr12:42,480,560...42,492,526
JBrowse link
G Tgfb2 transforming growth factor, beta 2 ISO MGI:2384513 (MGI:3522529|PMID:15531369), (MGI:894212|PMID:9217007) RGD PMID:9217007 PMID:15531369 MGI:3522529 MGI:894212 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 ISO MGI:87912 (MGI:3695190|PMID:16845371) RGD PMID:16845371 MGI:3695190 NCBI chr 5:63,056,071...63,119,635
Ensembl chr 5:63,050,758...63,119,635
JBrowse link
G Tle5 TLE family member 5, transcriptional modulator involved_in IEA
ISO
GO_REF:0000107
MGI:2180116 (MGI:2179356|PMID:11984876)
Ensembl
RGD
PMID:11984876 GO_REF:0000107 MGI:2179356 NCBI chr 7:11,012,843...11,018,156
Ensembl chr 7:11,013,681...11,018,160
JBrowse link
G Tp63 tumor protein p63 ISO MGI:1934269 (MGI:1335635|PMID:10227294) RGD PMID:10227294 MGI:1335635 NCBI chr11:78,234,853...78,456,559
Ensembl chr11:78,234,800...78,456,501
JBrowse link
G Trappc2 trafficking protein particle complex subunit 2 involved_in ISO (PMID:10431248) RGD PMID:10431248 NCBI chr  X:29,550,871...29,562,135
Ensembl chr  X:29,550,873...29,556,610
JBrowse link
G Trps1 transcriptional repressor GATA binding 1 involved_in ISO (PMID:10615131) RGD PMID:10615131 NCBI chr 7:90,085,895...90,320,430
Ensembl chr 7:90,090,828...90,318,221
JBrowse link
G Usp1 ubiquitin specific peptidase 1 ISO MGI:4363583 (MGI:5556046|PMID:21925315) RGD PMID:21925315 MGI:5556046 NCBI chr 5:117,583,502...117,594,872
Ensembl chr 5:117,583,502...117,594,870
JBrowse link
G Vcan versican involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:18,490,102...18,587,340
Ensembl chr 2:18,490,102...18,565,842
JBrowse link
G Vdr vitamin D receptor involved_in IEA
ISO
GO_REF:0000107
MGI:1859929 (MGI:894991|PMID:9241280)
Ensembl
RGD
PMID:9241280 GO_REF:0000107 MGI:894991 NCBI chr 7:139,344,452...139,394,138
Ensembl chr 7:139,342,063...139,394,166
JBrowse link
G Wdr5 WD repeat domain 5 ISO (MGI:2154588|PMID:11551928) RGD PMID:11551928 MGI:2154588 NCBI chr 3:6,061,892...6,080,724
Ensembl chr 3:6,061,940...6,080,680
JBrowse link
G Wfikkn1 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 ISO MGI:1338027|MGI:95586 (MGI:5511086|PMID:24019467) RGD PMID:24019467 MGI:5511086 NCBI chr10:15,243,429...15,245,757
Ensembl chr10:15,243,429...15,245,757
JBrowse link
G Wfikkn2 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 ISO MGI:1338027 (MGI:5511086|PMID:24019467) RGD PMID:24019467 MGI:5511086 NCBI chr10:81,936,156...81,943,142
Ensembl chr10:81,936,444...81,942,188
JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 ISO MGI:1856943|MGI:2182708 (MGI:1859075|PMID:10835630), (MGI:53518|PMID:6068186) RGD PMID:6068186 PMID:10835630 MGI:1859075 MGI:53518 MGI:61278 NCBI chr 8:52,980,226...53,146,765
Ensembl chr 8:52,985,313...53,146,953
JBrowse link
articular cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bgn biglycan ISO
IEA
MGI:107942 (MGI:5644410|PMID:19932218)
GO_REF:0000107
RGD
Ensembl
PMID:19932218 GO_REF:0000107 MGI:5644410 NCBI chr  X:157,319,042...157,331,204
Ensembl chr  X:157,319,046...157,331,204
JBrowse link
G Epyc epiphycan ISO
IEA
MGI:88158 (MGI:5644410|PMID:19932218)
GO_REF:0000107
RGD
Ensembl
PMID:19932218 GO_REF:0000107 MGI:5644410 NCBI chr 7:38,897,278...38,934,989
Ensembl chr 7:38,897,278...38,934,985
JBrowse link
G Ift80 intraflagellar transport 80 ISO
IEA
MGI:3665440|MGI:5818514 (MGI:5817320|PMID:26098911)
GO_REF:0000107
RGD
Ensembl
PMID:26098911 GO_REF:0000107 MGI:5817320 NCBI chr 2:165,506,878...165,600,748
Ensembl chr 2:165,505,810...165,600,748
JBrowse link
baculum development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Esr1 estrogen receptor 1 IEP RGD PMID:21471296 RGD:8552989 NCBI chr 1:41,192,029...41,594,799
Ensembl chr 1:41,192,824...41,594,796
JBrowse link
bone development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap13 A-kinase anchoring protein 13 involved_in ISS
ISO
GO_REF:0000024
(MGI:5770225|PMID:25892096)
UniProt
RGD
PMID:25892096 GO_REF:0000024 MGI:5770225 NCBI chr 1:137,089,558...137,315,272
Ensembl chr 1:137,014,272...137,315,272
JBrowse link
G Amer1 APC membrane recruitment protein 1 ISO MGI:2446599|MGI:5086003 (MGI:5013668|PMID:21571217) RGD PMID:21571217 MGI:5013668 NCBI chr  X:64,686,620...64,702,504
Ensembl chr  X:64,686,623...64,702,441
JBrowse link
G Ankrd11 ankyrin repeat domain 11 ISO MGI:3797584 (MGI:3796348|PMID:17986521) RGD PMID:17986521 MGI:3796348 NCBI chr19:55,703,831...55,862,446
Ensembl chr19:55,703,824...55,737,500
JBrowse link
G Asxl1 ASXL transcriptional regulator 1 ISO (MGI:5439228|PMID:22876197) RGD PMID:22876197 MGI:5439228 NCBI chr 3:148,832,231...148,902,356
Ensembl chr 3:148,837,814...148,900,452
JBrowse link
G Bbx BBX high mobility group box domain containing ISO (MGI:5439228|PMID:22876197) RGD PMID:22876197 MGI:5439228 NCBI chr11:52,983,286...53,228,557
Ensembl chr11:53,081,025...53,228,716
JBrowse link
G Bglap bone gamma-carboxyglutamate protein involved_in IEP
IBA
PMID:21873635 RGD
GO_Central
PMID:3488316, PMID:21873635, PMID:21873635 RGD:2316176, RGD:13792537, RGD:13792537 NCBI chr 2:187,741,770...187,748,445
Ensembl chr 2:187,741,770...187,742,747
JBrowse link
G Bgn biglycan ISO
IEA
MGI:107942 (MGI:5644410|PMID:19932218)
GO_REF:0000107
RGD
Ensembl
PMID:19932218 GO_REF:0000107 MGI:5644410 NCBI chr  X:157,319,042...157,331,204
Ensembl chr  X:157,319,046...157,331,204
JBrowse link
G Bmp2 bone morphogenetic protein 2 ISO MGI:3696052 (MGI:4829746|PMID:20551513) RGD PMID:20551513 MGI:4829746 NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO (MGI:63654|PMID:8358941) RGD PMID:8358941 MGI:63654 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B ISO MGI:3696052 (MGI:4829746|PMID:20551513) RGD PMID:20551513 MGI:4829746 NCBI chr 2:247,392,195...247,662,026
Ensembl chr 2:247,403,920...247,446,882
JBrowse link
G Cadm1 cell adhesion molecule 1 ISO (MGI:5439228|PMID:22876197) RGD PMID:22876197 MGI:5439228 NCBI chr 8:51,858,906...52,200,591
Ensembl chr 8:52,127,399...52,189,722
JBrowse link
G Ccn4 cellular communication network factor 4 involved_in IEA
ISO
GO_REF:0000107
(MGI:5788182|PMID:25864198), (MGI:6294593|PMID:15331410)
Ensembl
RGD
PMID:15331410 PMID:25864198 GO_REF:0000107 MGI:5788182 MGI:6294593 NCBI chr 7:107,695,227...107,723,759
Ensembl chr 7:107,695,215...107,723,772
JBrowse link
G Cfh complement factor H ISO (MGI:4421084|PMID:19828624) RGD PMID:19828624 MGI:4421084 NCBI chr13:56,979,155...57,080,540
Ensembl chr13:56,978,607...57,080,622
JBrowse link
G Chad chondroadherin involved_in IEA
ISO
GO_REF:0000107
MGI:5529270 (MGI:5525032|PMID:23755099)
Ensembl
RGD
PMID:23755099 GO_REF:0000107 MGI:5525032 NCBI chr10:82,290,296...82,296,146
Ensembl chr10:82,292,110...82,296,651
JBrowse link
G Col2a1 collagen type II alpha 1 chain ISO MGI:2148858 (MGI:1933050|PMID:11254354) RGD PMID:11254354 MGI:1933050 NCBI chr 7:139,454,945...139,484,403
Ensembl chr 7:139,455,242...139,483,997
JBrowse link
G Cr2 complement C3d receptor 2 ISO (MGI:4421084|PMID:19828624) RGD PMID:19828624 MGI:4421084 NCBI chr13:113,890,274...113,927,824
Ensembl chr13:113,890,272...113,927,877
JBrowse link
G Cyp19a1 cytochrome P450, family 19, subfamily a, polypeptide 1 IEP RGD PMID:15012600 RGD:4891061 NCBI chr 8:58,744,849...58,772,408
Ensembl chr 8:58,744,849...58,772,408
JBrowse link
G Dbh dopamine beta-hydroxylase IEP RGD PMID:20090303 RGD:5129678 NCBI chr 3:5,709,236...5,731,895
Ensembl chr 3:5,709,236...5,731,898
JBrowse link
G Dym dymeclin involved_in ISO
ISS
(PMID:21280149)
GO_REF:0000024
RGD
UniProt
PMID:21280149 GO_REF:0000024 NCBI chr18:70,996,074...71,313,033
Ensembl chr18:70,996,044...71,313,084
JBrowse link
G Eng endoglin IEP humerus RGD PMID:20865666 RGD:7257537 NCBI chr 3:11,679,530...11,717,486
Ensembl chr 3:11,679,530...11,717,485
JBrowse link
G Epyc epiphycan ISO
IEA
MGI:5762921|MGI:88158 (MGI:5644410|PMID:19932218)
GO_REF:0000107
RGD
Ensembl
PMID:19932218 GO_REF:0000107 MGI:5644410 NCBI chr 7:38,897,278...38,934,989
Ensembl chr 7:38,897,278...38,934,985
JBrowse link
G Fgf8 fibroblast growth factor 8 involved_in ISO (PMID:18596921) RGD PMID:18596921 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO MGI:3629660 (MGI:3688953|PMID:16989802) RGD PMID:16989802 MGI:3688953 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 ISO MGI:2135670 (MGI:4437389|PMID:20053668) RGD PMID:20053668 MGI:4437389 NCBI chr14:82,272,322...82,287,739
Ensembl chr14:82,273,070...82,287,706
JBrowse link
G Gja1 gap junction protein, alpha 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:6274948|PMID:25270829)
UniProt
RGD
PMID:25270829 GO_REF:0000024 MGI:6274948 NCBI chr20:37,876,650...37,889,097
Ensembl chr20:37,876,650...37,889,089
JBrowse link
G Gnas GNAS complex locus involved_in ISO (PMID:12719376) RGD PMID:12719376 NCBI chr 3:172,374,957...172,434,988
Ensembl chr 3:172,374,957...172,428,483
Ensembl chr 3:172,374,957...172,428,483
JBrowse link
G Hoxa11 homeobox A11 ISO MGI:2135973 (MGI:72977|PMID:7789268) RGD PMID:7789268 MGI:72977 NCBI chr 4:82,296,888...82,301,419
Ensembl chr 4:82,298,152...82,300,503
Ensembl chr 4:82,298,152...82,300,503
JBrowse link
G Hsd17b1 hydroxysteroid (17-beta) dehydrogenase 1 IEP RGD PMID:15012600 RGD:4891061 NCBI chr10:88,987,558...88,989,758
Ensembl chr10:88,987,558...88,989,757
JBrowse link
G Hsd17b2 hydroxysteroid (17-beta) dehydrogenase 2 IEP RGD PMID:15012600 RGD:4891061 NCBI chr19:50,246,404...50,317,892
Ensembl chr19:50,246,402...50,317,891
JBrowse link
G Idua alpha-L-iduronidase ISO MGI:4415188 (MGI:4414887|PMID:19751987) RGD PMID:19751987 MGI:4414887 NCBI chr14:2,041,828...2,056,762
Ensembl chr14:2,042,411...2,056,762
JBrowse link
G Ift172 intraflagellar transport 172 ISO MGI:4821824 (MGI:5285455|PMID:21653639) RGD PMID:21653639 MGI:5285455 NCBI chr 6:26,390,686...26,485,459 JBrowse link
G Igf1 insulin-like growth factor 1 IEP RGD PMID:24735836 RGD:11352746 NCBI chr 7:28,412,123...28,491,815
Ensembl chr 7:28,412,198...28,486,609
JBrowse link
G Itgb6 integrin subunit beta 6 ISO
IEA
(MGI:6454091|PMID:30467097)
GO_REF:0000107
RGD
Ensembl
PMID:30467097 GO_REF:0000107 MGI:6454091 NCBI chr 3:46,652,624...46,775,362
Ensembl chr 3:46,652,623...46,726,958
JBrowse link
G Lrp5 LDL receptor related protein 5 ISO (MGI:4835143|PMID:17700537) RGD PMID:17700537 MGI:4835143 NCBI chr 1:218,816,833...218,920,147
Ensembl chr 1:218,816,841...218,920,094
JBrowse link
G Map2k6 mitogen-activated protein kinase kinase 6 ISO MGI:3696052 (MGI:4829746|PMID:20551513) RGD PMID:20551513 MGI:4829746 NCBI chr10:98,707,160...98,823,054
Ensembl chr10:98,706,960...98,823,287
JBrowse link
G Map3k7 mitogen activated protein kinase kinase kinase 7 ISO MGI:3696052 (MGI:4829746|PMID:20551513) RGD PMID:20551513 MGI:4829746 NCBI chr 5:47,183,142...47,244,424
Ensembl chr 5:47,186,558...47,244,416
JBrowse link
G Mapk11 mitogen-activated protein kinase 11 ISO MGI:3696052 (MGI:4829746|PMID:20551513) RGD PMID:20551513 MGI:4829746 NCBI chr 7:130,121,678...130,129,199
Ensembl chr 7:130,121,687...130,128,604
JBrowse link
G Mapk14 mitogen activated protein kinase 14 involved_in ISO
IEA
MGI:3696052 (MGI:4829746|PMID:20551513)
GO_REF:0000107
RGD
Ensembl
PMID:20551513 GO_REF:0000107 MGI:4829746 NCBI chr20:5,933,290...5,995,137
Ensembl chr20:5,933,303...5,995,137
JBrowse link
G Mcph1 microcephalin 1 ISO MGI:4431685 (MGI:5502489|PMID:23516444) RGD PMID:23516444 MGI:5502489 NCBI chr16:75,904,087...76,110,624
Ensembl chr16:75,904,006...76,110,553
JBrowse link
G Miga2 mitoguardin 2 ISO (MGI:5439228|PMID:22876197) RGD PMID:22876197 MGI:5439228 NCBI chr 3:8,928,484...8,951,189
Ensembl chr 3:8,928,534...8,951,189
JBrowse link
G Mmp14 matrix metallopeptidase 14 ISO MGI:1276107 (MGI:3771253|PMID:18022611) RGD PMID:18022611 MGI:3771253 NCBI chr15:33,074,441...33,083,666
Ensembl chr15:33,074,441...33,083,655
JBrowse link
G Mmp16 matrix metallopeptidase 16 ISO MGI:2445723 (MGI:3771253|PMID:18022611) RGD PMID:18022611 MGI:3771253 NCBI chr 5:31,568,344...31,818,368
Ensembl chr 5:31,568,419...31,810,484
JBrowse link
G Myoc myocilin involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:5503270|PMID:23629661)
Ensembl
UniProt
RGD
PMID:23629661 GO_REF:0000024 GO_REF:0000107 MGI:5503270 NCBI chr13:80,517,531...80,527,928
Ensembl chr13:80,517,536...80,527,928
JBrowse link
G Nos3 nitric oxide synthase 3 IEP femur RGD PMID:10352094 RGD:7794707 NCBI chr 4:7,321,908...7,342,404
Ensembl chr 4:7,320,668...7,342,410
JBrowse link
G Npr2 natriuretic peptide receptor 2 ISO MGI:1856702 (MGI:54411|PMID:624676) RGD PMID:624676 MGI:54411 NCBI chr 5:59,128,186...59,147,321
Ensembl chr 5:59,128,315...59,147,255
JBrowse link
G Nsd2 nuclear receptor binding SET domain protein 2 ISO MGI:3851507 (MGI:3850584|PMID:19483677) RGD PMID:19483677 MGI:3850584 NCBI chr14:82,119,210...82,196,501
Ensembl chr14:82,119,210...82,171,480
JBrowse link
G Opa3 outer mitochondrial membrane lipid metabolism regulator OPA3 ISO MGI:5312669 (MGI:5810498|PMID:27106103) RGD PMID:27106103 MGI:5810498 NCBI chr 1:80,141,630...80,160,145
Ensembl chr 1:80,141,630...80,160,145
JBrowse link
G P3h1 prolyl 3-hydroxylase 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:17277775), (PMID:22615817)
Ensembl
RGD
PMID:17277775 PMID:22615817 GO_REF:0000107 NCBI chr 5:138,279,597...138,294,280
Ensembl chr 5:138,279,506...138,294,262
JBrowse link
G Papss2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 ISO MGI:1856688 (MGI:54411|PMID:624676) RGD PMID:624676 MGI:54411 NCBI chr 1:251,145,264...251,230,716
Ensembl chr 1:251,145,253...251,230,715
JBrowse link
G Pdgfa platelet derived growth factor subunit A ISO MGI:1859631 (MGI:5543868|PMID:23938297) RGD PMID:23938297 MGI:5543868 NCBI chr12:17,734,141...17,756,186
Ensembl chr12:17,734,133...17,755,285
JBrowse link
G Pdgfc platelet derived growth factor C ISO MGI:97527 (MGI:5543868|PMID:23938297) RGD PMID:23938297 MGI:5543868 NCBI chr 2:179,952,227...180,126,897
Ensembl chr 2:179,952,227...180,128,283
JBrowse link
G Phex phosphate regulating endopeptidase homolog, X-linked IEP RGD PMID:11064151 RGD:11556272 NCBI chr  X:40,460,047...40,717,982
Ensembl chr  X:40,460,047...40,717,982
JBrowse link
G Pls3 plastin 3 involved_in IEA
ISO
GO_REF:0000107
(PMID:24088043)
Ensembl
RGD
PMID:24088043 GO_REF:0000107 NCBI chr  X:119,030,311...119,124,268
Ensembl chr  X:119,030,419...119,124,250
JBrowse link
G Poc1a POC1 centriolar protein A ISO MGI:2135614 (MGI:5700251|PMID:26496357) RGD PMID:26496357 MGI:5700251 NCBI chr 8:114,982,764...115,050,844
Ensembl chr 8:114,986,326...115,050,728
JBrowse link
G Ppib peptidylprolyl isomerase B involved_in ISO (PMID:20089953) RGD PMID:20089953 NCBI chr 8:71,719,681...71,725,538
Ensembl chr 8:71,719,563...71,725,562
JBrowse link
G Prpsap2 phosphoribosyl pyrophosphate synthetase-associated protein 2 ISO (MGI:5439228|PMID:22876197) RGD PMID:22876197 MGI:5439228 NCBI chr10:48,008,799...48,044,435
Ensembl chr10:48,008,802...48,044,344
JBrowse link
G Ptger4 prostaglandin E receptor 4 involved_in IDA PMID:19233324 UniProt PMID:19233324, PMID:19233324 RGD:8554254, RGD:8554254 NCBI chr 2:54,951,625...54,966,470
Ensembl chr 2:54,952,821...54,963,448
JBrowse link
G Rara retinoic acid receptor, alpha ISO MGI:97858 (MGI:1096258|PMID:9376317), (MGI:69060|PMID:7607067) RGD PMID:7607067 PMID:9376317 MGI:1096258 MGI:69060 NCBI chr10:86,838,819...86,884,224
Ensembl chr10:86,860,685...86,884,210
JBrowse link
G Rarb retinoic acid receptor, beta ISO MGI:97858 (MGI:69060|PMID:7607067) RGD PMID:7607067 MGI:69060 NCBI chr15:9,915,223...10,262,599
Ensembl chr15:10,120,206...10,262,599
JBrowse link
G Rarg retinoic acid receptor, gamma ISO MGI:97856 (MGI:1096258|PMID:9376317)
MGI:97856|MGI:97857 (MGI:3848572|PMID:19389355), (MGI:69060|PMID:7607067)
RGD PMID:7607067 PMID:9376317 PMID:19389355 MGI:1096258 MGI:3848572 MGI:69060 NCBI chr 7:143,840,739...143,863,206
Ensembl chr 7:143,839,980...143,863,186
JBrowse link
G Rpl13 ribosomal protein L13 involved_in ISO (PMID:31630789) RGD PMID:31630789 NCBI chr19:55,917,489...55,920,040
Ensembl chr19:55,917,736...55,919,996
JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 ISO (MGI:5439228|PMID:22876197) RGD PMID:22876197 MGI:5439228 NCBI chr 2:196,495,867...196,527,412
Ensembl chr 2:196,495,867...196,527,127
JBrowse link
G Sh3pxd2b SH3 and PX domains 2B involved_in ISO (PMID:20137777)
(MGI:4439252|PMID:20137777)
RGD PMID:20137777 MGI:4439252 NCBI chr10:17,209,152...17,296,449
Ensembl chr10:17,209,212...17,291,876
JBrowse link
G Slc10a7 solute carrier family 10, member 7 involved_in ISO (PMID:30082715)
(MGI:6198941|PMID:30082715)
RGD PMID:30082715 MGI:6198941 NCBI chr19:32,857,984...33,081,359
Ensembl chr19:32,855,343...33,080,998
JBrowse link
G Slc38a10 solute carrier family 38, member 10 ISO (MGI:5439228|PMID:22876197) RGD PMID:22876197 MGI:5439228 NCBI chr10:109,284,054...109,333,907
Ensembl chr10:109,284,957...109,333,899
JBrowse link
G Smad1 SMAD family member 1 involved_in IEA
ISO
GO_REF:0000107
MGI:1328787|MGI:1859993 (MGI:3840027|PMID:19224984)
Ensembl
RGD
PMID:19224984 GO_REF:0000107 MGI:3840027 NCBI chr19:32,182,942...32,248,694
Ensembl chr19:32,188,267...32,248,684
JBrowse link
G Smad5 SMAD family member 5 ISO MGI:109452|MGI:1859993 (MGI:3840027|PMID:19224984) RGD PMID:19224984 MGI:3840027 NCBI chr17:8,307,448...8,336,996
Ensembl chr17:8,311,796...8,331,032
JBrowse link
G Smad9 SMAD family member 9 ISO MGI:109452|MGI:1328787 (MGI:3840027|PMID:19224984) RGD PMID:19224984 MGI:3840027 NCBI chr 2:143,951,725...144,002,025
Ensembl chr 2:144,191,846...144,212,138
Ensembl chr 2:144,191,846...144,212,138
JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 ISO (MGI:5805317|PMID:27325675) RGD PMID:27325675 MGI:5805317 NCBI chr19:38,237,963...38,321,572
Ensembl chr19:38,237,965...38,321,528
JBrowse link
G Sparc secreted protein acidic and cysteine rich ISO (MGI:5439228|PMID:22876197) RGD PMID:22876197 MGI:5439228 NCBI chr10:40,742,390...40,764,232
Ensembl chr10:40,742,400...40,764,185
JBrowse link
G Spns2 sphingolipid transporter 2 ISO (MGI:5439228|PMID:22876197) RGD PMID:22876197 MGI:5439228 NCBI chr10:59,010,428...59,049,482
Ensembl chr10:59,010,428...59,049,482
JBrowse link
G Srd5a1 steroid 5 alpha-reductase 1 IEP RGD PMID:15012600 RGD:4891061 NCBI chr 1:36,320,504...36,354,694
Ensembl chr 1:36,320,461...36,354,756
JBrowse link
G Srd5a2 steroid 5 alpha-reductase 2 IEP RGD PMID:15012600 RGD:4891061 NCBI chr 6:25,279,635...25,315,501
Ensembl chr 6:25,279,626...25,315,511
JBrowse link
G Stc1 stanniocalcin 1 involved_in ISO (PMID:16377640) RGD PMID:16377640 NCBI chr15:50,891,137...50,901,791
Ensembl chr15:50,891,127...50,903,162
JBrowse link
G Sulf1 sulfatase 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000104
UniProtKB:Q8CFG0 (MGI:3769052|PMID:17593974)
UniProt
RGD
PMID:17593974 GO_REF:0000024 GO_REF:0000104 MGI:3769052 NCBI chr 5:5,999,520...6,186,901
Ensembl chr 5:5,999,475...6,186,329
JBrowse link
G Sulf2 sulfatase 2 ISO UniProtKB:Q8K007 (MGI:3769052|PMID:17593974) RGD PMID:17593974 MGI:3769052 NCBI chr 3:162,791,349...162,872,984
Ensembl chr 3:162,791,355...162,872,831
JBrowse link
G Tmem38b transmembrane protein 38B ISO MGI:1921416 (MGI:6141091|PMID:27188440) RGD PMID:27188440 MGI:6141091 NCBI chr 5:70,639,156...70,675,055
Ensembl chr 5:70,639,156...70,675,054
JBrowse link
G Tnfsf11 TNF superfamily member 11 ISO MGI:5614816 (MGI:5646594|PMID:26234751) RGD PMID:26234751 MGI:5646594 NCBI chr15:60,482,527...60,512,704
Ensembl chr15:60,482,527...60,512,704
JBrowse link
G Trim45 tripartite motif-containing 45 ISO (MGI:5439228|PMID:22876197) RGD PMID:22876197 MGI:5439228 NCBI chr 2:203,301,838...203,310,532
Ensembl chr 2:203,301,838...203,310,532
JBrowse link
G Trip11 thyroid hormone receptor interactor 11 ISO MGI:3836913|MGI:4829605 (MGI:4822550|PMID:20089971) RGD PMID:20089971 MGI:4822550 NCBI chr 6:125,741,520...125,812,926
Ensembl chr 6:125,742,796...125,812,517
JBrowse link
G Ttc9 tetratricopeptide repeat domain 9 ISO (MGI:5903425|PMID:25798063) RGD PMID:25798063 MGI:5903425 NCBI chr 6:105,364,668...105,399,500
Ensembl chr 6:105,364,668...105,399,500
JBrowse link
G Tulp3 TUB like protein 3 ISO MGI:2388066 (MGI:2136130|PMID:11406614) RGD PMID:11406614 MGI:2136130 NCBI chr 4:161,636,084...161,677,807
Ensembl chr 4:161,637,892...161,658,519
JBrowse link
G Twist1 twist family bHLH transcription factor 1 IEP RGD PMID:8773900 RGD:5131604 NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214
JBrowse link
G Vkorc1 vitamin K epoxide reductase complex, subunit 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5559848|PMID:19492146)
UniProt
RGD
PMID:19492146 GO_REF:0000024 MGI:5559848 NCBI chr 1:199,338,785...199,341,306
Ensembl chr 1:199,337,138...199,341,302
JBrowse link
G Wnt1 Wnt family member 1 involved_in ISO (PMID:23499309) RGD PMID:23499309 NCBI chr 7:140,464,999...140,469,046
Ensembl chr 7:140,464,999...140,469,046
JBrowse link
bone marrow development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07034833.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr12:53,872...54,885 JBrowse link
G AABR07071701.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 8:126,975,833...126,976,850 JBrowse link
G Asxl1 ASXL transcriptional regulator 1 ISO MGI:4418244 (MGI:4418016|PMID:19861679) RGD PMID:19861679 MGI:4418016 NCBI chr 3:148,832,231...148,902,356
Ensembl chr 3:148,837,814...148,900,452
JBrowse link
G Ctc1 CST telomere replication complex component 1 ISO MGI:5427642 (MGI:5426340|PMID:22531781) RGD PMID:22531781 MGI:5426340 NCBI chr10:55,596,172...55,616,873
Ensembl chr10:55,596,148...55,616,889
JBrowse link
G Hoxb4 homeo box B4 ISO MGI:3045971 (MGI:3045582|PMID:14962901) RGD PMID:14962901 MGI:3045582 NCBI chr10:84,167,331...84,169,913
Ensembl chr10:84,167,331...84,169,907
JBrowse link
G LOC102554748 nidogen-2-like involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 7:380,313...427,615
Ensembl chr 7:380,741...381,732
JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO
IBA
(PMID:17680723)
PMID:21873635
RGD PMID:17680723, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:218,816,833...218,920,147
Ensembl chr 1:218,816,841...218,920,094
JBrowse link
G Lrrc17 leucine rich repeat containing 17 ISO (MGI:3850892|PMID:19336404) RGD PMID:19336404 MGI:3850892 NCBI chr 4:10,108,184...10,138,652
Ensembl chr 4:10,108,192...10,138,652
JBrowse link
G Mir188 microRNA 188 ISO (MGI:5643971|PMID:25751060) RGD PMID:25751060 MGI:5643971 NCBI chr  X:16,110,270...16,110,349
Ensembl chr  X:16,110,270...16,110,349
JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C involved_in ISO (PMID:21911094) RGD PMID:21911094 NCBI chr13:55,061,561...55,174,150
Ensembl chr13:55,061,562...55,173,692
JBrowse link
G Sbds SBDS, ribosome maturation factor involved_in ISO (PMID:15342903) RGD PMID:15342903 NCBI chr12:29,921,443...29,930,602
Ensembl chr12:29,921,443...29,930,600
JBrowse link
G Tp53 tumor protein p53 involved_in ISO (PMID:30146126) RGD PMID:30146126 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
bone maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr3 fibroblast growth factor receptor 3 ISO (MGI:4457789|PMID:20582225) RGD PMID:20582225 MGI:4457789 NCBI chr14:82,272,322...82,287,739
Ensembl chr14:82,273,070...82,287,706
JBrowse link
G Gh1 growth hormone 1 involved_in ISO (PMID:20110402) RGD PMID:20110402 NCBI chr10:94,486,204...94,488,181
Ensembl chr10:94,486,205...94,488,180
JBrowse link
G Mbtps2 membrane-bound transcription factor peptidase, site 2 involved_in ISO (PMID:27380894) RGD PMID:27380894 NCBI chr  X:40,258,933...40,309,047
Ensembl chr  X:40,258,493...40,310,563
JBrowse link
bone mineralization involved in bone maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ano6 anoctamin 6 ISO MGI:4127698 (MGI:5486117|PMID:22936354) RGD PMID:22936354 MGI:5486117 NCBI chr 7:137,142,063...137,335,208
Ensembl chr 7:137,142,170...137,335,208
JBrowse link
G Bmp2 bone morphogenetic protein 2 involved_in ISO
ISS
(PMID:16433617)
GO_REF:0000024
RGD
UniProt
PMID:16433617 GO_REF:0000024 NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
JBrowse link
G Ccdc154 coiled-coil domain containing 154 ISO MGI:5702426 (MGI:5697796|PMID:20121924) RGD PMID:20121924 MGI:5697796 NCBI chr10:14,518,240...14,529,920
Ensembl chr10:14,519,164...14,528,277
JBrowse link
G Ift80 intraflagellar transport 80 ISO
IEA
MGI:3689350|MGI:5818514 (MGI:5807019|PMID:26996322)
GO_REF:0000107
RGD
Ensembl
PMID:26996322 GO_REF:0000107 MGI:5807019 NCBI chr 2:165,506,878...165,600,748
Ensembl chr 2:165,505,810...165,600,748
JBrowse link
G Igf1 insulin-like growth factor 1 involved_in ISO
IEA
(PMID:16433617)
GO_REF:0000107
RGD
Ensembl
PMID:16433617 GO_REF:0000107 NCBI chr 7:28,412,123...28,491,815
Ensembl chr 7:28,412,198...28,486,609
JBrowse link
G Lep leptin IDA RGD PMID:21353474 RGD:5128507 NCBI chr 4:56,337,695...56,351,818
Ensembl chr 4:56,337,695...56,351,818
JBrowse link
G Phospho1 phosphoethanolamine/phosphocholine phosphatase 1 involved_in ISO
IBA
MGI:5049904 (MGI:5008224|PMID:21272676)
PMID:21873635
RGD PMID:21272676, PMID:21873635, PMID:21873635 MGI:5008224, RGD:13792537, RGD:13792537 NCBI chr10:83,635,557...83,643,862
Ensembl chr10:83,636,518...83,643,859
JBrowse link
G Snx10 sorting nexin 10 ISO MGI:5690193 (MGI:5688814|PMID:25811986) RGD PMID:25811986 MGI:5688814 NCBI chr 4:81,311,490...81,375,248
Ensembl chr 4:81,311,490...81,374,158
JBrowse link
bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07034833.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr12:53,872...54,885 JBrowse link
G AABR07071701.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr 8:126,975,833...126,976,850 JBrowse link
G Acp5 acid phosphatase 5, tartrate resistant involved_in IEA
ISO
GO_REF:0000107
MGI:2180086 (MGI:83673|PMID:8898228)
Ensembl
RGD
PMID:8898228 GO_REF:0000107 MGI:83673 NCBI chr 8:23,142,733...23,149,067
Ensembl chr 8:23,142,734...23,148,396
JBrowse link
G Actn3 actinin alpha 3 ISO (MGI:5291888|PMID:21784188) RGD PMID:21784188 MGI:5291888 NCBI chr 1:220,120,532...220,136,460
Ensembl chr 1:220,120,533...220,136,470
JBrowse link
G Cdx1 caudal type homeo box 1 involved_in IEA
ISO
GO_REF:0000107
MGI:2154514|MGI:97858 (MGI:2154839|PMID:11784046)
Ensembl
RGD
PMID:11784046 GO_REF:0000107 MGI:2154839 NCBI chr18:56,337,485...56,355,477
Ensembl chr18:56,338,336...56,355,490
JBrowse link
G Chsy1 chondroitin sulfate synthase 1 ISO MGI:5007063 (MGI:5316547|PMID:22280990) RGD PMID:22280990 MGI:5316547 NCBI chr 1:127,010,587...127,071,570
Ensembl chr 1:127,010,588...127,071,570
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 ISO MGI:2179740 (MGI:4457799|PMID:20549734) RGD PMID:20549734 MGI:4457799 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
JBrowse link
G Col9a1 collagen type IX alpha 1 chain ISO MGI:88469 (MGI:3807836|PMID:18191556) RGD PMID:18191556 MGI:3807836 NCBI chr 9:30,419,001...30,502,307
Ensembl chr 9:30,419,001...30,502,298
JBrowse link
G Comp cartilage oligomeric matrix protein ISO MGI:88465 (MGI:3807836|PMID:18191556) RGD PMID:18191556 MGI:3807836 NCBI chr16:20,798,437...20,807,070
Ensembl chr16:20,798,437...20,807,070
JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 involved_in ISO (PMID:22019272) RGD PMID:22019272 NCBI chr 4:116,261,796...116,278,615
Ensembl chr 4:116,261,796...116,278,615
JBrowse link
G Dhrs3 dehydrogenase/reductase 3 ISO MGI:5007106 (MGI:5528782|PMID:24005908) RGD PMID:24005908 MGI:5528782 NCBI chr 5:162,809,090...162,843,385
Ensembl chr 5:162,808,646...162,843,383
JBrowse link
G Dlx5 distal-less homeobox 5 ISO MGI:2180474 (MGI:3611627|PMID:16330189) RGD PMID:16330189 MGI:3611627 NCBI chr 4:32,387,741...32,392,085
Ensembl chr 4:32,387,741...32,392,007
JBrowse link
G Ext1 exostosin glycosyltransferase 1 ISO (MGI:4431165|PMID:20080592), (MGI:4834113|PMID:20404326) RGD PMID:20080592 PMID:20404326 MGI:4431165 MGI:4834113 NCBI chr 7:92,605,008...92,881,392
Ensembl chr 7:92,605,728...92,882,068
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO MGI:2153799 (MGI:1346744|PMID:10518547) RGD PMID:10518547 MGI:1346744 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 ISO MGI:1931521 (MGI:4352984|PMID:19407216), (MGI:4457789|PMID:20582225) RGD PMID:19407216 PMID:20582225 MGI:4352984 MGI:4457789 NCBI chr14:82,272,322...82,287,739
Ensembl chr14:82,273,070...82,287,706
JBrowse link
G Glg1 golgi glycoprotein 1 involved_in IEA
ISO
GO_REF:0000107
MGI:4829764 (MGI:4829577|PMID:20530870)
Ensembl
RGD
PMID:20530870 GO_REF:0000107 MGI:4829577 NCBI chr19:42,983,879...43,088,074
Ensembl chr19:42,983,869...43,090,841
JBrowse link
G Has2 hyaluronan synthase 2 ISO MGI:2176070|MGI:4360705 (MGI:4880794|PMID:21246657) RGD PMID:21246657 MGI:4880794 NCBI chr 7:96,438,046...96,464,049
Ensembl chr 7:96,438,046...96,464,049
JBrowse link
G Ifitm5 interferon induced transmembrane protein 5 involved_in ISO
IBA
(PMID:24519609)
PMID:21873635
(MGI:5607401|PMID:20838829)
RGD PMID:20838829 PMID:24519609, PMID:21873635, PMID:21873635 MGI:5607401, RGD:13792537, RGD:13792537 NCBI chr 1:213,743,331...213,749,879
Ensembl chr 1:213,744,796...213,745,748
JBrowse link
G Ift80 intraflagellar transport 80 ISO MGI:3856827 (MGI:4940140|PMID:21227999) RGD PMID:21227999 MGI:4940140 NCBI chr 2:165,506,878...165,600,748
Ensembl chr 2:165,505,810...165,600,748
JBrowse link
G LOC102554748 nidogen-2-like involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 7:380,313...427,615
Ensembl chr 7:380,741...381,732
JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO
IBA
(PMID:19673927), (PMID:20146170), (PMID:20630166)
PMID:21873635
RGD PMID:19673927 PMID:20146170 PMID:20630166, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 1:218,816,833...218,920,147
Ensembl chr 1:218,816,841...218,920,094
JBrowse link
G Lrp6 LDL receptor related protein 6 involved_in ISO
IBA
MGI:1861309
PMID:21873635
RGD PMID:21873635, PMID:21873635 MGI:61254, RGD:13792537, RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Ltbp3 latent transforming growth factor beta binding protein 3 ISO MGI:2180017 (MGI:2178869|PMID:11790802), (MGI:4829577|PMID:20530870) RGD PMID:11790802 PMID:20530870 MGI:2178869 MGI:4829577 NCBI chr 1:221,099,155...221,116,096
Ensembl chr 1:221,099,998...221,116,096
JBrowse link
G Ltf lactotransferrin involved_in ISO (PMID:15166119) RGD PMID:15166119 NCBI chr 8:119,290,416...119,313,261
Ensembl chr 8:119,290,416...119,313,261
JBrowse link
G Mmp13 matrix metallopeptidase 13 involved_in ISO
ISS
(PMID:16167086)
GO_REF:0000024
RGD
UniProt
PMID:16167086 GO_REF:0000024 NCBI chr 8:5,522,739...5,533,018
Ensembl chr 8:5,522,739...5,533,018
JBrowse link
G Msx1 msh homeobox 1 ISO MGI:1933766|MGI:97169 (MGI:3608570|PMID:12489152), (MGI:3611627|PMID:16330189), (MGI:3723565|PMID:17693062) RGD PMID:12489152 PMID:16330189 PMID:17693062 MGI:3608570 MGI:3611627 MGI:3723565 NCBI chr14:77,712,262...77,716,061
Ensembl chr14:77,712,240...77,716,059
JBrowse link
G Msx2 msh homeobox 2 ISO MGI:97168 (MGI:3723565|PMID:17693062) RGD PMID:17693062 MGI:3723565 NCBI chr17:11,683,862...11,689,527
Ensembl chr17:11,683,862...11,689,527
JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:3818159|PMID:17547533)
UniProt
RGD
PMID:17547533 GO_REF:0000024 MGI:3818159 NCBI chr 7:74,047,820...74,055,096
Ensembl chr 7:74,047,814...74,055,256
JBrowse link
G Pappa2 pappalysin 2 ISO MGI:5504500 (MGI:5502277|PMID:23457539) RGD PMID:23457539 MGI:5502277 NCBI chr13:76,389,150...76,660,248
Ensembl chr13:76,389,150...76,660,245
JBrowse link
G Pax1 paired box 1 ISO MGI:1856223|MGI:1856225 (MGI:69019|PMID:7607069) RGD PMID:7607069 MGI:69019 NCBI chr 3:141,577,124...141,589,849
Ensembl chr 3:141,577,504...141,589,849
JBrowse link
G Rarg retinoic acid receptor, gamma ISO MGI:1931079|MGI:88360 (MGI:2154839|PMID:11784046), (MGI:60925|PMID:8388780) RGD PMID:8388780 PMID:11784046 MGI:2154839 MGI:60925 NCBI chr 7:143,840,739...143,863,206
Ensembl chr 7:143,839,980...143,863,186
JBrowse link
G Ripply1 ripply transcriptional repressor 1 ISO MGI:2685968|MGI:4459309 (MGI:4459001|PMID:20346937) RGD PMID:20346937 MGI:4459001 NCBI chr  X:111,099,420...111,114,835
Ensembl chr  X:111,099,930...111,102,464
JBrowse link
G Ripply2 ripply transcriptional repressor 2 ISO MGI:3614797 (MGI:4459001|PMID:20346937) RGD PMID:20346937 MGI:4459001 NCBI chr 8:94,676,579...94,691,125
Ensembl chr 8:94,686,938...94,691,041
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 ISO MGI:3810257 (MGI:3806414|PMID:18729207) RGD PMID:18729207 MGI:3806414 NCBI chr 2:182,723,732...182,731,277
Ensembl chr 2:182,723,854...182,731,764
JBrowse link
G Sfrp4 secreted frizzled-related protein 4 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:27355534)
(MGI:5790095|PMID:27355534)
Ensembl
UniProt
RGD
PMID:27355534 GO_REF:0000024 GO_REF:0000107 MGI:5790095 NCBI chr17:47,383,983...47,394,065
Ensembl chr17:47,297,489...47,394,328
JBrowse link
G Ski SKI proto-oncogene ISO MGI:2177555 (MGI:1095997|PMID:9284043) RGD PMID:9284043 MGI:1095997 NCBI chr 5:172,556,196...172,623,878
Ensembl chr 5:172,559,135...172,623,899
JBrowse link
G Sp5 Sp5 transcription factor ISO MGI:98472 (MGI:1927252|PMID:11071760) RGD PMID:11071760 MGI:1927252 NCBI chr 3:56,766,475...56,769,277
Ensembl chr 3:56,766,475...56,769,277
JBrowse link
G Tbxt T-box transcription factor T ISO MGI:1927715 (MGI:1927252|PMID:11071760) RGD PMID:11071760 MGI:1927252 NCBI chr 1:52,887,067...52,900,691
Ensembl chr 1:52,887,067...52,894,832
JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISS
ISO
GO_REF:0000024
(MGI:80519|PMID:8622766)
UniProt
RGD
PMID:8622766 GO_REF:0000024 MGI:80519 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
bone trabecula formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col1a1 collagen type I alpha 1 chain ISO MGI:97009 (MGI:3710444|PMID:17440987) RGD PMID:17440987 MGI:3710444 NCBI chr10:82,745,801...82,762,790
Ensembl chr10:82,745,801...82,762,789
JBrowse link
G Fbn2 fibrillin 2 ISO (MGI:4836762|PMID:20855508) RGD PMID:20855508 MGI:4836762 NCBI chr18:53,068,495...53,272,254
Ensembl chr18:53,068,495...53,181,503
JBrowse link
G Mmp2 matrix metallopeptidase 2 involved_in IEA
ISO
GO_REF:0000107
MGI:88467 (MGI:3710444|PMID:17440987)
Ensembl
RGD
PMID:17440987 GO_REF:0000107 MGI:3710444 NCBI chr19:15,542,771...15,570,589
Ensembl chr19:15,542,765...15,570,611
JBrowse link
G Msx2 msh homeobox 2 involved_in IEA
ISO
GO_REF:0000107
MGI:1926381 (MGI:1355063|PMID:10742104)
Ensembl
RGD
PMID:10742104 GO_REF:0000107 MGI:1355063 NCBI chr17:11,683,862...11,689,527
Ensembl chr17:11,683,862...11,689,527
JBrowse link
G Ppargc1b PPARG coactivator 1 beta ISO (MGI:3838421|PMID:19252502) RGD PMID:19252502 MGI:3838421 NCBI chr18:56,626,725...56,650,524
Ensembl chr18:56,626,712...56,728,968
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 IEA
ISO
GO_REF:0000107
MGI:3045799 (MGI:3040721|PMID:14976225)
Ensembl
RGD
PMID:14976225 GO_REF:0000107 MGI:3040721 NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
JBrowse link
G Thbs3 thrombospondin 3 ISO MGI:3581964 (MGI:3581317|PMID:15964815) RGD PMID:15964815 MGI:3581317 NCBI chr 2:188,528,979...188,540,738
Ensembl chr 2:188,528,979...188,540,736
JBrowse link
G Vegfa vascular endothelial growth factor A ISO MGI:1931048 (MGI:5461755|PMID:22886301) RGD PMID:22886301 MGI:5461755 NCBI chr 9:17,340,341...17,355,681
Ensembl chr 9:17,340,341...17,355,681
JBrowse link
G Wnt10b Wnt family member 10B ISO MGI:3582610 (MGI:3574150|PMID:15728361) RGD PMID:15728361 MGI:3574150 NCBI chr 7:140,448,284...140,466,159
Ensembl chr 7:140,448,465...140,454,268
JBrowse link
bronchus cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sox9 SRY-box transcription factor 9 ISO MGI:2429649 (MGI:5524169|PMID:24218621) RGD PMID:24218621 MGI:5524169 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
G Srf serum response factor ISO MGI:3522206 (MGI:5524169|PMID:24218621) RGD PMID:24218621 MGI:5524169 NCBI chr 9:16,737,637...16,747,226
Ensembl chr 9:16,737,642...16,747,225
JBrowse link
cartilage condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan involved_in IEA
ISO
GO_REF:0000107
MGI:1856465 (MGI:2664273|PMID:3070812)
Ensembl
RGD
PMID:3070812 GO_REF:0000107 MGI:2664273 NCBI chr 1:140,762,758...140,824,441
Ensembl chr 1:140,762,758...140,824,441
JBrowse link
G Barx2 BARX homeobox 2 ISO (MGI:3578585|PMID:15800003) RGD PMID:15800003 MGI:3578585 NCBI chr 8:32,950,878...33,018,245
Ensembl chr 8:32,950,875...33,017,854
JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B ISO MGI:2158498 (MGI:1351297|PMID:10631181) RGD PMID:10631181 MGI:1351297 NCBI chr 2:247,392,195...247,662,026
Ensembl chr 2:247,403,920...247,446,882
JBrowse link
G Ccn2 cellular communication network factor 2 ISO (MGI:3050271|PMID:15305294) RGD PMID:15305294 MGI:3050271 NCBI chr 1:21,851,657...21,854,773
Ensembl chr 1:21,851,660...21,854,773
JBrowse link
G Chad chondroadherin IEP RGD PMID:9461555 RGD:69806 NCBI chr10:82,290,296...82,296,146
Ensembl chr10:82,292,110...82,296,651
JBrowse link
G Col11a1 collagen type XI alpha 1 chain ISO MGI:1856399 (MGI:2664273|PMID:3070812) RGD PMID:3070812 MGI:2664273 NCBI chr 2:216,863,423...217,056,523
Ensembl chr 2:216,863,428...217,056,523
JBrowse link
G Col2a1 collagen type II alpha 1 chain involved_in IEA
ISO
GO_REF:0000107
MGI:1857275 (MGI:2664273|PMID:3070812)
Ensembl
RGD
PMID:3070812 GO_REF:0000107 MGI:2664273 NCBI chr 7:139,454,945...139,484,403
Ensembl chr 7:139,455,242...139,483,997
JBrowse link
G Fgf4 fibroblast growth factor 4 ISO MGI:98726 (MGI:78390|PMID:8565825) RGD PMID:8565825 MGI:78390 NCBI chr 1:218,024,537...218,029,539
Ensembl chr 1:218,025,810...218,027,220
JBrowse link
G Fgf6 fibroblast growth factor 6 ISO MGI:98726 (MGI:78390|PMID:8565825) RGD PMID:8565825 MGI:78390 NCBI chr 4:159,563,798...159,572,333
Ensembl chr 4:159,563,798...159,572,333
JBrowse link
G Mapk14 mitogen activated protein kinase 14 IEA
ISO
GO_REF:0000107
(MGI:5487758|PMID:17202865)
Ensembl
RGD
PMID:17202865 GO_REF:0000107 MGI:5487758 NCBI chr20:5,933,290...5,995,137
Ensembl chr20:5,933,303...5,995,137
JBrowse link
G Mycn MYCN proto-oncogene, bHLH transcription factor involved_in IEA
ISO
GO_REF:0000107
(MGI:3790402|PMID:17360777)
Ensembl
RGD
PMID:17360777 GO_REF:0000107 MGI:3790402 NCBI chr 6:38,222,554...38,228,419
Ensembl chr 6:38,222,555...38,228,379
JBrowse link
G Myf5 myogenic factor 5 ISO MGI:1857219 (MGI:78390|PMID:8565825) RGD PMID:8565825 MGI:78390 NCBI chr 7:49,729,533...49,732,974
Ensembl chr 7:49,729,533...49,732,764
JBrowse link
G Otor otoraplin involved_in ISO
IBA
(MGI:1928405|PMID:10998416)
PMID:21873635
RGD PMID:10998416, PMID:21873635, PMID:21873635 MGI:1928405, RGD:13792537, RGD:13792537 NCBI chr 3:137,154,086...137,157,341
Ensembl chr 3:137,154,086...137,157,341
JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting ISO MGI:2152589 (MGI:2152028|PMID:11593033) RGD PMID:11593033 MGI:2152028 NCBI chr10:13,914,057...13,962,008
Ensembl chr10:13,915,214...13,962,008
JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 ISO MGI:2183225 (MGI:3037488|PMID:14745966) RGD PMID:14745966 MGI:3037488 NCBI chr17:11,953,552...12,134,386
Ensembl chr17:11,953,552...12,134,386
JBrowse link
G Sox5 SRY-box transcription factor 5 involved_in ISS
ISO
GO_REF:0000024
(MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235)
UniProt
RGD
PMID:11702786 PMID:14993235 GO_REF:0000024 MGI:2446758 MGI:3037234 NCBI chr 4:178,062,267...179,031,991
Ensembl chr 4:178,066,165...178,441,547
JBrowse link
G Sox6 SRY-box transcription factor 6 involved_in ISS
ISO
GO_REF:0000024
(MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235)
UniProt
RGD
PMID:11702786 PMID:14993235 GO_REF:0000024 MGI:2446758 MGI:3037234 NCBI chr 1:185,631,702...186,186,192
Ensembl chr 1:185,673,177...186,182,829
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISS
ISO
GO_REF:0000024
MGI:2158693|MGI:2385468 (MGI:2159578|PMID:10319868), (MGI:2389523|PMID:12414734)
UniProt
RGD
PMID:10319868 PMID:12414734 GO_REF:0000024 MGI:2159578 MGI:2389523 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
G Sulf1 sulfatase 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 5:5,999,520...6,186,901
Ensembl chr 5:5,999,475...6,186,329
JBrowse link
G Tgfb2 transforming growth factor, beta 2 ISO MGI:95518|MGI:95520 (MGI:78390|PMID:8565825) RGD PMID:8565825 MGI:78390 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
G Thra thyroid hormone receptor alpha involved_in IEA
ISO
GO_REF:0000107
MGI:1860442 (MGI:894529|PMID:9250685)
Ensembl
RGD
PMID:9250685 GO_REF:0000107 MGI:894529 NCBI chr10:86,657,285...86,684,935
Ensembl chr10:86,657,285...86,684,933
JBrowse link
G Uncx UNC homeobox involved_in IEA
ISO
GO_REF:0000107
MGI:1859373|MGI:1928812 (MGI:1855901|PMID:10804169), (MGI:1855902|PMID:10804168)
Ensembl
RGD
PMID:10804168 PMID:10804169 GO_REF:0000107 MGI:1855901 MGI:1855902 NCBI chr12:17,182,158...17,186,679
Ensembl chr12:17,182,163...17,186,679
JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (PMID:17202865) RGD PMID:17202865 NCBI chr 4:122,994,425...123,040,609
Ensembl chr 4:122,994,425...123,040,609
JBrowse link
cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha ISO MGI:1856097 (MGI:83811|PMID:8895222) RGD PMID:8895222 MGI:83811 NCBI chr  X:77,076,085...77,193,644
Ensembl chr  X:77,076,106...77,193,644
JBrowse link
G Bbs1 Bardet-Biedl syndrome 1 ISO MGI:3767672 (MGI:5474015|PMID:19195025) RGD PMID:19195025 MGI:5474015 NCBI chr 1:220,146,084...220,165,545
Ensembl chr 1:220,147,327...220,165,678
JBrowse link
G Bbs2 Bardet-Biedl syndrome 2 ISO MGI:3521669 (MGI:5474015|PMID:19195025) RGD PMID:19195025 MGI:5474015 NCBI chr19:11,385,921...11,421,523
Ensembl chr19:11,386,024...11,421,498
JBrowse link
G Bmp3 bone morphogenetic protein 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:12,362,912...12,387,572
Ensembl chr14:12,359,363...12,387,102
JBrowse link
G Bmp6 bone morphogenetic protein 6 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:26,955,142...27,112,820
Ensembl chr17:26,955,142...27,112,820
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A ISO MGI:2158390|MGI:3577961 (MGI:3576405|PMID:15492776) RGD PMID:15492776 MGI:3576405 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Cd44 CD44 molecule (Indian blood group) involved_in IEA
ISO
GO_REF:0000107
(PMID:11944887)
Ensembl
RGD
PMID:11944887 GO_REF:0000107 NCBI chr 3:92,695,083...92,783,820
Ensembl chr 3:92,696,313...92,783,658
JBrowse link
G Cfh complement factor H ISO (MGI:4421084|PMID:19828624) RGD PMID:19828624 MGI:4421084 NCBI chr13:56,979,155...57,080,540
Ensembl chr13:56,978,607...57,080,622
JBrowse link
G Chst11 carbohydrate sulfotransferase 11 ISO MGI:3768254 (MGI:3767479|PMID:16079159) RGD PMID:16079159 MGI:3767479 NCBI chr 7:26,641,856...26,890,503
Ensembl chr 7:26,645,422...26,859,716
JBrowse link
G Chsy1 chondroitin sulfate synthase 1 ISO MGI:5007063 (MGI:5316547|PMID:22280990) RGD PMID:22280990 MGI:5316547 NCBI chr 1:127,010,587...127,071,570
Ensembl chr 1:127,010,588...127,071,570
JBrowse link
G Cnmd chondromodulin involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:61,923,291...61,947,840
Ensembl chr15:61,923,299...61,947,764
JBrowse link
G Col10a1 collagen type X alpha 1 chain IMP RGD PMID:10853827 RGD:704421 NCBI chr20:41,180,295...41,190,664
Ensembl chr20:41,184,287...41,189,633
JBrowse link
G Col11a1 collagen type XI alpha 1 chain ISO MGI:1856399 (MGI:53676|PMID:4100752), (MGI:53732|PMID:4110409), (MGI:54324|PMID:886247), (MGI:70833|PMID:7859283) RGD PMID:886247 PMID:4100752 PMID:4110409 PMID:7859283 MGI:53676 MGI:53732 MGI:54324 MGI:60257 MGI:70833 NCBI chr 2:216,863,423...217,056,523
Ensembl chr 2:216,863,428...217,056,523
JBrowse link
G Col11a2 collagen type XI alpha 2 chain involved_in ISO
IBA
(PMID:9188673)
PMID:21873635
RGD PMID:9188673, PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr20:3,829,324...3,859,022
Ensembl chr20:3,830,164...3,859,018
JBrowse link
G Col2a1 collagen type II alpha 1 chain IEP
ISO
MGI:1857275|MGI:2152978 (MGI:1315157|PMID:9832566), (MGI:1334159|PMID:10100048), (MGI:3618042|PMID:11171689), (MGI:3697977|PMID:11680679), (MGI:55057|PMID:7276808), (MGI:77563|PMID:7590256), (MGI:86483|PMID:9061443), (MGI:892501|PMID:9165353) RGD PMID:7276808 PMID:7590256 PMID:9061443 PMID:9165353 PMID:9832566 PMID:10100048 PMID:11171689 PMID:11680679, PMID:9822201 MGI:1315157 MGI:1334159 MGI:3618042 MGI:3697977 MGI:55057 MGI:77563 MGI:86483 MGI:892501, RGD:70694 NCBI chr 7:139,454,945...139,484,403
Ensembl chr 7:139,455,242...139,483,997
JBrowse link
G Col9a1 collagen type IX alpha 1 chain ISO MGI:2152964|MGI:88469 (MGI:3697977|PMID:11680679), (MGI:3807836|PMID:18191556) RGD PMID:11680679 PMID:18191556 MGI:3697977 MGI:3807836 NCBI chr 9:30,419,001...30,502,307
Ensembl chr 9:30,419,001...30,502,298
JBrowse link
G Comp cartilage oligomeric matrix protein ISO MGI:3758741|MGI:5550566|MGI:88465 (MGI:3723532|PMID:17588960), (MGI:3807836|PMID:18191556), (MGI:5510903|PMID:23951406) RGD PMID:17588960 PMID:18191556 PMID:23951406 MGI:3723532 MGI:3807836 MGI:5510903 NCBI chr16:20,798,437...20,807,070
Ensembl chr16:20,798,437...20,807,070
JBrowse link
G Cr2 complement C3d receptor 2 ISO (MGI:4421084|PMID:19828624) RGD PMID:19828624 MGI:4421084 NCBI chr13:113,890,274...113,927,824
Ensembl chr13:113,890,272...113,927,877
JBrowse link
G Creb3l2 cAMP responsive element binding protein 3-like 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:4438315|PMID:19767744)
UniProt
RGD
PMID:19767744 GO_REF:0000024 MGI:4438315 NCBI chr 4:64,869,285...64,981,519
Ensembl chr 4:64,869,026...64,981,384
JBrowse link
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 ISO MGI:4868209 (MGI:4849906|PMID:20812917) RGD PMID:20812917 MGI:4849906 NCBI chr16:22,704,318...23,075,071
Ensembl chr16:22,979,444...23,074,798
JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO (PMID:28263186)
(MGI:5908314|PMID:28263186)
RGD PMID:28263186 MGI:5908314 NCBI chr 3:123,195,580...123,206,828
Ensembl chr 3:123,195,580...123,206,828
JBrowse link
G Dicer1 dicer 1 ribonuclease III ISO MGI:3589208 (MGI:4849577|PMID:21098571) RGD PMID:21098571 MGI:4849577 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Dlx2 distal-less homeobox 2 involved_in IEA
ISO
GO_REF:0000107
MGI:1857828 (MGI:76977|PMID:7590232)
Ensembl
RGD
PMID:7590232 GO_REF:0000107 MGI:76977 NCBI chr 3:58,180,088...58,181,971
Ensembl chr 3:58,180,088...58,181,971
JBrowse link
G Dspp dentin sialophosphoprotein IEP femoral head RGD PMID:20679519 RGD:12914771 NCBI chr14:6,926,972...6,933,079
Ensembl chr14:6,926,976...6,933,070
JBrowse link
G Edn1 endothelin 1 ISO MGI:1857637 (MGI:65725|PMID:8152482) RGD PMID:8152482 MGI:65725 NCBI chr17:22,136,814...22,143,745
Ensembl chr17:22,137,324...22,143,324
JBrowse link
G Esrra estrogen related receptor, alpha IMP RGD PMID:17170100 RGD:1625657 NCBI chr 1:222,168,729...222,178,842
Ensembl chr 1:222,168,730...222,178,725
JBrowse link
G Evc EvC ciliary complex subunit 1 IEP RGD PMID:15278943 RGD:1598913 NCBI chr14:78,213,601...78,253,266
Ensembl chr14:78,213,635...78,253,266
JBrowse link
G Fbxw4 F-box and WD repeat domain containing 4 ISO MGI:1857833 (MGI:1278141|PMID:9733575) RGD PMID:9733575 MGI:1278141 NCBI chr 1:265,318,526...265,420,503
Ensembl chr 1:265,318,526...265,420,503
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 ISO MGI:1931521 (MGI:3584218|PMID:15781473) RGD PMID:15781473 MGI:3584218 NCBI chr14:82,272,322...82,287,739
Ensembl chr14:82,273,070...82,287,706
JBrowse link
G Gnas GNAS complex locus ISO MGI:3043361 (MGI:3619837|PMID:15797856) RGD PMID:15797856 MGI:3619837 NCBI chr 3:172,374,957...172,434,988
Ensembl chr 3:172,374,957...172,428,483
Ensembl chr 3:172,374,957...172,428,483
JBrowse link
G Hes5 hes family bHLH transcription factor 5 involved_in ISO
ISS
(PMID:17093926)
GO_REF:0000024
(MGI:5285816|PMID:17093926)
RGD
UniProt
PMID:17093926 GO_REF:0000024 MGI:5285816 NCBI chr 5:172,364,421...172,365,188
Ensembl chr 5:172,364,421...172,365,188
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in IEA
ISO
GO_REF:0000107
MGI:2386649|MGI:2386679 (MGI:2153426|PMID:11691837)
Ensembl
RGD
PMID:11691837 GO_REF:0000107 MGI:2153426 NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052
JBrowse link
G Hoxa3 homeobox A3 ISO MGI:96184|MGI:96207 (MGI:1195045|PMID:9441667) RGD PMID:9441667 MGI:1195045 NCBI chr 4:82,137,802...82,181,836
Ensembl chr 4:82,138,683...82,141,385
JBrowse link
G Hoxb3 homeo box B3 ISO MGI:96175|MGI:96207 (MGI:1195045|PMID:9441667) RGD PMID:9441667 MGI:1195045 NCBI chr10:84,170,629...84,196,823
Ensembl chr10:84,182,118...84,195,796
JBrowse link
G Hoxc4 homeo box C4 involved_in IEA
ISO
GO_REF:0000107
MGI:1857570 (MGI:79121|PMID:8626021)
Ensembl
RGD
PMID:8626021 GO_REF:0000107 MGI:79121 NCBI chr 7:144,646,605...144,652,589
Ensembl chr 7:144,647,587...144,650,129
JBrowse link
G Hoxd3 homeo box D3 involved_in IEA
ISO
GO_REF:0000107
MGI:96175|MGI:96184 (MGI:1195045|PMID:9441667)
Ensembl
RGD
PMID:9441667 GO_REF:0000107 MGI:1195045 NCBI chr 3:61,650,569...61,670,285
Ensembl chr 3:61,658,245...61,670,282
JBrowse link
G Hyal1 hyaluronidase 1 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:11944887)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:11944887 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:116,332,834...116,337,522
Ensembl chr 8:116,332,796...116,335,435
JBrowse link
G Hyal2 hyaluronidase 2 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:11944887)
Ensembl
UniProt
RGD
PMID:11944887 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:116,324,062...116,328,978
Ensembl chr 8:116,324,040...116,328,978
JBrowse link
G Hyal3 hyaluronidase 3 involved_in IEA
ISO
GO_REF:0000107
(PMID:11944887)
Ensembl
RGD
PMID:11944887 GO_REF:0000107 NCBI chr 8:116,336,512...116,342,147
Ensembl chr 8:116,336,512...116,342,146
JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in ISO MGI:1934258 (MGI:3695832|PMID:17191253)
(PMID:17889828)
RGD PMID:17191253 PMID:17889828 MGI:3695832 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
JBrowse link
G Il17f interleukin 17F involved_in IEA
ISO
GO_REF:0000107
(PMID:11574464)
Ensembl
RGD
PMID:11574464 GO_REF:0000107 NCBI chr 9:26,885,702...26,897,219
Ensembl chr 9:26,885,708...26,897,219
JBrowse link
G Itgb8 integrin subunit beta 8 involved_in ISO (PMID:24312400) RGD PMID:24312400 NCBI chr 6:147,089,280...147,172,846
Ensembl chr 6:147,094,097...147,172,813
JBrowse link
G Lum lumican IEP RGD PMID:19746167 RGD:2317685 NCBI chr 7:38,820,058...38,826,862
Ensembl chr 7:38,819,771...38,826,862
JBrowse link
G Mapk3 mitogen activated protein kinase 3 ISO (MGI:3758399|PMID:17644814) RGD PMID:17644814 MGI:3758399 NCBI chr 1:198,192,773...198,198,975
Ensembl chr 1:198,192,773...198,198,975
JBrowse link
G Matn3 matrilin 3 ISO MGI:3759029 (MGI:5510903|PMID:23951406) RGD PMID:23951406 MGI:5510903 NCBI chr 6:34,071,428...34,091,048
Ensembl chr 6:34,071,428...34,091,048
JBrowse link
G Mgp matrix Gla protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:170,856,783...170,860,105
Ensembl chr 4:170,856,751...170,860,225
JBrowse link
G Mir140 microRNA 140 ISO MGI:4461000 (MGI:4454342|PMID:20466812) RGD PMID:20466812 MGI:4454342 NCBI chr19:39,608,951...39,609,049
Ensembl chr19:39,608,951...39,609,049
JBrowse link
G Mkks McKusick-Kaufman syndrome ISO MGI:3526444 (MGI:5474015|PMID:19195025) RGD PMID:19195025 MGI:5474015 NCBI chr 3:129,866,542...129,885,213
Ensembl chr 3:129,866,545...129,884,810
JBrowse link
G Mmp13 matrix metallopeptidase 13 ISO MGI:3521852 (MGI:3513736|PMID:15563592) RGD PMID:15563592 MGI:3513736 NCBI chr 8:5,522,739...5,533,018
Ensembl chr 8:5,522,739...5,533,018
JBrowse link
G Msx1 msh homeobox 1 IMP RGD PMID:10332146 RGD:1600462 NCBI chr14:77,712,262...77,716,061
Ensembl chr14:77,712,240...77,716,059
JBrowse link
G Msx2 msh homeobox 2 IMP
ISO
MGI:1926381 (MGI:1355063|PMID:10742104), (MGI:2151298|PMID:11668602) RGD PMID:10742104 PMID:11668602, PMID:10332146 MGI:1355063 MGI:2151298, RGD:1600462 NCBI chr17:11,683,862...11,689,527
Ensembl chr17:11,683,862...11,689,527
JBrowse link
G Nog noggin involved_in IEA GO_REF:0000104
GO_REF:0000043
UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link
G Pax7 paired box 7 ISO MGI:1857831 (MGI:79520|PMID:8631261) RGD PMID:8631261 MGI:79520 NCBI chr 5:158,211,001...158,313,510
Ensembl chr 5:158,214,616...158,313,426
JBrowse link
G Pitx1 paired-like homeodomain 1 ISO MGI:1857659 (MGI:1333095|PMID:10101115) RGD PMID:10101115 MGI:1333095 NCBI chr17:8,873,184...8,884,428
Ensembl chr17:8,878,270...8,884,423
JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting involved_in ISO (PMID:11891195) RGD PMID:11891195 NCBI chr10:13,914,057...13,962,008
Ensembl chr10:13,915,214...13,962,008
JBrowse link
G Prrx1 paired related homeobox 1 ISO MGI:1857640|MGI:98218 (MGI:1321048|PMID:9876178), (MGI:73363|PMID:7758948) RGD PMID:7758948 PMID:9876178 MGI:1321048 MGI:73363 NCBI chr13:81,147,038...81,215,559
Ensembl chr13:81,147,348...81,214,546
JBrowse link
G Prrx2 paired related homeobox 2 ISO MGI:97712 (MGI:1321048|PMID:9876178) RGD PMID:9876178 MGI:1321048 NCBI chr 3:9,681,871...9,718,051
Ensembl chr 3:9,681,871...9,718,051
JBrowse link
G Satb2 SATB homeobox 2 ISO MGI:3692768 (MGI:3692344|PMID:16751105) RGD PMID:16751105 MGI:3692344 NCBI chr 9:63,456,877...63,642,193
Ensembl chr 9:63,456,783...63,641,400
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 ISO MGI:3810257 (MGI:3806414|PMID:18729207) RGD PMID:18729207 MGI:3806414 NCBI chr 2:182,723,732...182,731,277
Ensembl chr 2:182,723,854...182,731,764
JBrowse link
G Smad1 SMAD family member 1 involved_in IEA
ISO
GO_REF:0000107
MGI:1328787|MGI:1859993 (MGI:3840027|PMID:19224984)
Ensembl
RGD
PMID:19224984 GO_REF:0000107 MGI:3840027 NCBI chr19:32,182,942...32,248,694
Ensembl chr19:32,188,267...32,248,684
JBrowse link
G Smad5 SMAD family member 5 ISO MGI:109452|MGI:1859993 (MGI:3840027|PMID:19224984) RGD PMID:19224984 MGI:3840027 NCBI chr17:8,307,448...8,336,996
Ensembl chr17:8,311,796...8,331,032
JBrowse link
G Smad9 SMAD family member 9 ISO MGI:109452|MGI:1328787 (MGI:3840027|PMID:19224984) RGD PMID:19224984 MGI:3840027 NCBI chr 2:143,951,725...144,002,025
Ensembl chr 2:144,191,846...144,212,138
Ensembl chr 2:144,191,846...144,212,138
JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 ISO MGI:3575405 (MGI:3715574|PMID:17591962), (MGI:5805317|PMID:27325675) RGD PMID:17591962 PMID:27325675 MGI:3715574 MGI:5805317 NCBI chr19:38,237,963...38,321,572
Ensembl chr19:38,237,965...38,321,528
JBrowse link
G Snorc secondary ossification center associated regulator of chondrocyte maturation ISO (MGI:6103145|PMID:28323137) RGD PMID:28323137 MGI:6103145 NCBI chr 9:94,562,839...94,568,312
Ensembl chr 9:94,562,839...94,568,312
JBrowse link
G Sox5 SRY-box transcription factor 5 involved_in ISS
ISO
GO_REF:0000024
MGI:98368 (MGI:3525903|PMID:15634692), (MGI:5780653|PMID:26150426), (MGI:6414706|PMID:15529345)
UniProt
RGD
PMID:15529345 PMID:15634692 PMID:26150426 GO_REF:0000024 MGI:3525903 MGI:5780653 MGI:6414706 NCBI chr 4:178,062,267...179,031,991
Ensembl chr 4:178,066,165...178,441,547
JBrowse link
G Sox6 SRY-box transcription factor 6 involved_in ISS
ISO
GO_REF:0000024
MGI:98367 (MGI:3525903|PMID:15634692), (MGI:5780653|PMID:26150426), (MGI:6414706|PMID:15529345)
UniProt
RGD
PMID:15529345 PMID:15634692 PMID:26150426 GO_REF:0000024 MGI:3525903 MGI:5780653 MGI:6414706 NCBI chr 1:185,631,702...186,186,192
Ensembl chr 1:185,673,177...186,182,829
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in TAS
NAS
ISS
ISO
IEP
PMID:19828133
GO_REF:0000024
MGI:2158693 (MGI:2135696|PMID:11371614), (MGI:5908314|PMID:28263186), (MGI:6414706|PMID:15529345)
UniProt
RGD
PMID:11371614 PMID:15529345 PMID:28263186, PMID:11514554, PMID:19828133, PMID:19828133, PMID:15512770 GO_REF:0000024 MGI:2135696 MGI:5908314 MGI:6414706, RGD:70568, RGD:8553796, RGD:8553796, RGD:1599098 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
G Sulf1 sulfatase 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5306560|PMID:20479257)
UniProt
RGD
PMID:20479257 GO_REF:0000024 MGI:5306560 NCBI chr 5:5,999,520...6,186,901
Ensembl chr 5:5,999,475...6,186,329
JBrowse link
G Sulf2 sulfatase 2 ISO (MGI:5306560|PMID:20479257) RGD PMID:20479257 MGI:5306560 NCBI chr 3:162,791,349...162,872,984
Ensembl chr 3:162,791,355...162,872,831
JBrowse link
G Tapt1 transmembrane anterior posterior transformation 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:71,416,153...71,462,646
Ensembl chr14:71,424,083...71,462,618
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 ISO (MGI:3796269|PMID:18498113) RGD PMID:18498113 MGI:3796269 NCBI chr 8:124,310,288...124,399,345
Ensembl chr 8:124,312,754...124,399,494
JBrowse link
G Timp1 TIMP metallopeptidase inhibitor 1 IEP RGD PMID:16208432 RGD:8694091 NCBI chr  X:1,364,771...1,369,451
Ensembl chr  X:1,364,786...1,369,384
JBrowse link
G Trip11 thyroid hormone receptor interactor 11 involved_in ISO (PMID:30728324) RGD PMID:30728324 NCBI chr 6:125,741,520...125,812,926
Ensembl chr 6:125,742,796...125,812,517
JBrowse link
G Tyms thymidylate synthetase IEP RGD PMID:3471366 RGD:2317423 NCBI chr 9:121,918,875...121,931,564
Ensembl chr 9:121,918,947...121,931,564
JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
G Wnt7a Wnt family member 7A ISO (MGI:4821073|PMID:16826533) RGD PMID:16826533 MGI:4821073 NCBI chr 4:122,994,425...123,040,609
Ensembl chr 4:122,994,425...123,040,609
JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 involved_in ISO
ISS
(PMID:21547890)
GO_REF:0000024
RGD
UniProt
PMID:21547890 GO_REF:0000024 NCBI chr 8:52,980,226...53,146,765
Ensembl chr 8:52,985,313...53,146,953
JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 involved_in IEA
ISO
GO_REF:0000107
MGI:1857799 (MGI:1195626|PMID:9389660)
Ensembl
RGD
PMID:9389660 GO_REF:0000107 MGI:1195626 NCBI chr17:54,656,627...54,714,920
Ensembl chr17:54,658,463...54,714,914
JBrowse link
cartilage development involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta synthase ISO MGI:1857139 (MGI:3656462|PMID:15622513) RGD PMID:15622513 MGI:3656462 NCBI chr20:10,361,987...10,386,663
Ensembl chr20:10,361,988...10,386,751
JBrowse link
G Col1a1 collagen type I alpha 1 chain ISO MGI:3769585 (MGI:3769669|PMID:18248096) RGD PMID:18248096 MGI:3769669 NCBI chr10:82,745,801...82,762,790
Ensembl chr10:82,745,801...82,762,789
JBrowse link
G Col2a1 collagen type II alpha 1 chain involved_in IEP
IEA
ISO
mandibular condylar cartilage
GO_REF:0000107
MGI:1857275|MGI:2152978 (MGI:3697977|PMID:11680679), (MGI:84914|PMID:8989518), (MGI:85592|PMID:9022054)
Ensembl
RGD
PMID:8989518 PMID:9022054 PMID:11680679, PMID:12924823 GO_REF:0000107 MGI:3697977 MGI:84914 MGI:85592, RGD:8661659 NCBI chr 7:139,454,945...139,484,403
Ensembl chr 7:139,455,242...139,483,997
JBrowse link
G Ext1 exostosin glycosyltransferase 1 ISO
IEA
(MGI:4946896|PMID:21185280)
GO_REF:0000107
RGD
Ensembl
PMID:21185280 GO_REF:0000107 MGI:4946896 NCBI chr 7:92,605,008...92,881,392
Ensembl chr 7:92,605,728...92,882,068
JBrowse link
G Ghr growth hormone receptor IEP RGD PMID:15749813 RGD:2307373 NCBI chr 2:53,149,225...53,413,954
Ensembl chr 2:53,150,370...53,413,638
JBrowse link
G Hoxa11 homeobox A11 ISO MGI:96203 (MGI:3043491|PMID:14668414) RGD PMID:14668414 MGI:3043491 NCBI chr 4:82,296,888...82,301,419
Ensembl chr 4:82,298,152...82,300,503
Ensembl chr 4:82,298,152...82,300,503
JBrowse link
G Hoxd11 homeobox D11 ISO MGI:96172 (MGI:3043491|PMID:14668414) RGD PMID:14668414 MGI:3043491 NCBI chr 3:61,604,256...61,606,874
Ensembl chr 3:61,604,672...61,606,400
JBrowse link
G Hspg2 heparan sulfate proteoglycan 2 ISO MGI:1934891 (MGI:1930356|PMID:10545953) RGD PMID:10545953 MGI:1930356 NCBI chr 5:155,812,096...155,913,751 JBrowse link
G Shox2 short stature homeobox 2 ISO MGI:3628798 (MGI:3621617|PMID:16537395) RGD PMID:16537395 MGI:3621617 NCBI chr 2:164,118,175...164,126,783
Ensembl chr 2:164,118,191...164,126,783
JBrowse link
G Sik3 SIK family kinase 3 ISO MGI:5317918 (MGI:5316542|PMID:22318228) RGD PMID:22318228 MGI:5316542 NCBI chr 8:50,310,263...50,520,284
Ensembl chr 8:50,310,405...50,520,173
JBrowse link
G Trpv4 transient receptor potential cation channel, subfamily V, member 4 involved_in ISO (PMID:26249260) RGD PMID:26249260 NCBI chr12:47,698,915...47,737,902
Ensembl chr12:47,698,947...47,737,902
JBrowse link
cartilage morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hand1 heart and neural crest derivatives expressed 1 ISO MGI:103580 (MGI:3765375|PMID:17764670) RGD PMID:17764670 MGI:3765375 NCBI chr10:43,250,729...43,253,296
Ensembl chr10:43,250,745...43,253,296
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 involved_in IEA
ISO
GO_REF:0000107
MGI:103577 (MGI:3765375|PMID:17764670)
Ensembl
RGD
PMID:17764670 GO_REF:0000107 MGI:3765375 NCBI chr16:36,371,489...36,373,551
Ensembl chr16:36,371,489...36,373,546
JBrowse link
G Hoxa5 homeo box A5 ISO MGI:2150397 (MGI:1195049|PMID:9441679) RGD PMID:9441679 MGI:1195049
G Mef2c myocyte enhancer factor 2C ISO MGI:3603182 (MGI:3714538|PMID:17420000) RGD PMID:17420000 MGI:3714538 NCBI chr 2:11,658,534...11,822,788
Ensembl chr 2:11,658,568...11,822,787
JBrowse link
G Msx1 msh homeobox 1 ISO MGI:1933766 (MGI:3608570|PMID:12489152) RGD PMID:12489152 MGI:3608570 NCBI chr14:77,712,262...77,716,061
Ensembl chr14:77,712,240...77,716,059
JBrowse link
G Snai1 snail family transcriptional repressor 1 ISO MGI:1096393 (MGI:3709678|PMID:17376812) RGD PMID:17376812 MGI:3709678 NCBI chr 3:164,274,710...164,279,199
Ensembl chr 3:164,274,710...164,279,378
JBrowse link
G Snai2 snail family transcriptional repressor 2 ISO MGI:98330 (MGI:3709678|PMID:17376812) RGD PMID:17376812 MGI:3709678 NCBI chr11:90,404,421...90,406,730
Ensembl chr11:90,403,333...90,406,797
JBrowse link
chondroblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan IEP RGD PMID:20001227 RGD:2315747 NCBI chr 1:140,762,758...140,824,441
Ensembl chr 1:140,762,758...140,824,441
JBrowse link
G Ccn1 cellular communication network factor 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:1195020|PMID:9441684)
Ensembl
RGD
PMID:9441684 GO_REF:0000107 MGI:1195020 NCBI chr 2:251,529,354...251,532,312
Ensembl chr 2:251,529,354...251,532,312
JBrowse link
G Fgf2 fibroblast growth factor 2 involved_in ISO (PMID:17167778) RGD PMID:17167778 NCBI chr 2:124,081,072...124,134,133
Ensembl chr 2:124,081,072...124,134,681
JBrowse link
G Fgf4 fibroblast growth factor 4 involved_in ISO (PMID:17167778) RGD PMID:17167778 NCBI chr 1:218,024,537...218,029,539
Ensembl chr 1:218,025,810...218,027,220
JBrowse link
G Gdf5 growth differentiation factor 5 involved_in ISO (PMID:25092592) RGD PMID:25092592 NCBI chr 3:151,482,672...151,487,129
Ensembl chr 3:151,483,249...151,486,693
JBrowse link
G Rara retinoic acid receptor, alpha ISO (MGI:1353721|PMID:10684250) RGD PMID:10684250 MGI:1353721 NCBI chr10:86,838,819...86,884,224
Ensembl chr10:86,860,685...86,884,210
JBrowse link
chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan IEA
ISO
GO_REF:0000107
MGI:1856465 (MGI:1270958|PMID:9664687)
Ensembl
RGD
PMID:9664687 GO_REF:0000107 MGI:1270958 NCBI chr 1:140,762,758...140,824,441
Ensembl chr 1:140,762,758...140,824,441
JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 involved_in ISO (PMID:9442116) RGD PMID:9442116 NCBI chr 9:66,568,074...66,683,019
Ensembl chr 9:66,568,074...66,676,494
JBrowse link
G Bpnt2 3'(2'), 5'-bisphosphate nucleotidase 2 ISO MGI:3806990 (MGI:3799383|PMID:18539921) RGD PMID:18539921 MGI:3799383 NCBI chr17:90,191,119...90,218,013
Ensembl chr17:90,188,043...90,218,013
Ensembl chr 5:90,188,043...90,218,013
JBrowse link
G Chst11 carbohydrate sulfotransferase 11 ISO MGI:3768254 (MGI:3767479|PMID:16079159) RGD PMID:16079159 MGI:3767479 NCBI chr 7:26,641,856...26,890,503
Ensembl chr 7:26,645,422...26,859,716
JBrowse link
G Chsy1 chondroitin sulfate synthase 1 ISO MGI:5007063 (MGI:5316547|PMID:22280990) RGD PMID:22280990 MGI:5316547 NCBI chr 1:127,010,587...127,071,570
Ensembl chr 1:127,010,588...127,071,570
JBrowse link
G Col11a1 collagen type XI alpha 1 chain ISO MGI:1856399 (MGI:53676|PMID:4100752) RGD PMID:4100752 MGI:53676 NCBI chr 2:216,863,423...217,056,523
Ensembl chr 2:216,863,428...217,056,523
JBrowse link
G Comp cartilage oligomeric matrix protein involved_in IEA
ISO
GO_REF:0000107
MGI:3758741|MGI:5550566 (MGI:3723532|PMID:17588960), (MGI:5550565|PMID:22006726)
Ensembl
RGD
PMID:17588960 PMID:22006726 GO_REF:0000107 MGI:3723532 MGI:5550565 NCBI chr16:20,798,437...20,807,070
Ensembl chr16:20,798,437...20,807,070
JBrowse link
G Ecm1 extracellular matrix protein 1 ISO (MGI:4452294|PMID:20138147) RGD PMID:20138147 MGI:4452294 NCBI chr 2:197,855,468...197,860,973
Ensembl chr 2:197,855,460...197,860,699
JBrowse link
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 ISO MGI:2183829 (MGI:2670283|PMID:12865332) RGD PMID:12865332 MGI:2670283 NCBI chr 4:98,648,513...98,709,695
Ensembl chr 4:98,648,545...98,709,694
JBrowse link
G Fgf18 fibroblast growth factor 18 involved_in IEA
ISO
GO_REF:0000107
MGI:2178751 (MGI:3703411|PMID:17014841)
Ensembl
RGD
PMID:17014841 GO_REF:0000107 MGI:3703411 NCBI chr10:18,047,109...18,082,290
Ensembl chr10:18,047,109...18,063,391
JBrowse link
G Mia3 MIA SH3 domain ER export factor 3 ISO MGI:5007248 (MGI:5008683|PMID:21606205) RGD PMID:21606205 MGI:5008683 NCBI chr13:101,727,434...101,770,127
Ensembl chr13:101,727,935...101,761,541
JBrowse link
G Msx2 msh homeobox 2 involved_in IEA
ISO
GO_REF:0000107
MGI:1926381 (MGI:1355063|PMID:10742104)
Ensembl
RGD
PMID:10742104 GO_REF:0000107 MGI:1355063 NCBI chr17:11,683,862...11,689,527
Ensembl chr17:11,683,862...11,689,527
JBrowse link
G Rarg retinoic acid receptor, gamma ISO (MGI:3848572|PMID:19389355) RGD PMID:19389355 MGI:3848572 NCBI chr 7:143,840,739...143,863,206
Ensembl chr 7:143,839,980...143,863,186
JBrowse link
G Runx2 RUNX family transcription factor 2 involved_in ISO
IEA
MGI:2176466 (MGI:1334093|PMID:10213384)
GO_REF:0000107
RGD
Ensembl
PMID:10213384 GO_REF:0000107 MGI:1334093 NCBI chr 9:18,564,743...18,773,092
Ensembl chr 9:18,564,927...18,773,092
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 ISO MGI:3810257 (MGI:3806414|PMID:18729207) RGD PMID:18729207 MGI:3806414 NCBI chr 2:182,723,732...182,731,277
Ensembl chr 2:182,723,854...182,731,764
JBrowse link
G Shox2 short stature homeobox 2 ISO MGI:3605739 (MGI:3714677|PMID:17481601) RGD PMID:17481601 MGI:3714677 NCBI chr 2:164,118,175...164,126,783
Ensembl chr 2:164,118,191...164,126,783
JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 ISO MGI:3575405 (MGI:3715574|PMID:17591962), (MGI:5582670|PMID:24505141) RGD PMID:17591962 PMID:24505141 MGI:3715574 MGI:5582670 NCBI chr19:38,237,963...38,321,572
Ensembl chr19:38,237,965...38,321,528
JBrowse link
G Sox9 SRY-box transcription factor 9 ISO (MGI:3784676|PMID:18415932) RGD PMID:18415932 MGI:3784676 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
G Sulf1 sulfatase 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000104
(MGI:5306560|PMID:20479257)
UniProt
RGD
PMID:20479257 GO_REF:0000024 GO_REF:0000104 MGI:5306560 NCBI chr 5:5,999,520...6,186,901
Ensembl chr 5:5,999,475...6,186,329
JBrowse link
G Sulf2 sulfatase 2 ISO (MGI:5306560|PMID:20479257) RGD PMID:20479257 MGI:5306560 NCBI chr 3:162,791,349...162,872,984
Ensembl chr 3:162,791,355...162,872,831
JBrowse link
chondrocyte development involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Serpinh1 serpin family H member 1 involved_in IEA
ISO
GO_REF:0000107
MGI:2176070|MGI:5505265 (MGI:5494537|PMID:22492985)
Ensembl
RGD
PMID:22492985 GO_REF:0000107 MGI:5494537 NCBI chr 1:164,301,010...164,308,306
Ensembl chr 1:164,301,010...164,308,317
JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 involved_in IEA
ISO
GO_REF:0000107
MGI:1856877 (MGI:5293259|PMID:21788370)
Ensembl
RGD
PMID:21788370 GO_REF:0000107 MGI:5293259 NCBI chr19:38,237,963...38,321,572
Ensembl chr19:38,237,965...38,321,528
JBrowse link
chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid5a AT-rich interaction domain 5A ISO (MGI:5317270|PMID:21346191) RGD PMID:21346191 MGI:5317270 NCBI chr 9:42,871,907...42,886,725
Ensembl chr 9:42,871,950...42,884,855
JBrowse link
G Bmp2 bone morphogenetic protein 2 involved_in ISO
IEA
(PMID:16194878)
GO_REF:0000107
RGD
Ensembl
PMID:16194878 GO_REF:0000107 NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:4418577|PMID:20059955)
Ensembl
UniProt
RGD
PMID:20059955 GO_REF:0000024 GO_REF:0000107 MGI:4418577 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A ISO (MGI:5522580|PMID:24098149) RGD PMID:24098149 MGI:5522580 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B ISO MGI:1927616|MGI:95688 (MGI:3819026|PMID:18363966), (MGI:5522580|PMID:24098149) RGD PMID:18363966 PMID:24098149 MGI:3819026 MGI:5522580 NCBI chr 2:247,392,195...247,662,026
Ensembl chr 2:247,403,920...247,446,882
JBrowse link
G Ccn3 cellular communication network factor 3 involved_in IMP
ISS
ISO
PMID:21871891
GO_REF:0000024
(PMID:21871891)
UniProt
RGD
PMID:21871891, PMID:21871891, PMID:21871891 GO_REF:0000024, RGD:10400852, RGD:10400852 NCBI chr 7:94,375,134...94,382,154
Ensembl chr 7:94,375,020...94,383,024
JBrowse link
G Col11a2 collagen type XI alpha 2 chain ISO MGI:2154689 (MGI:2151300|PMID:11668593) RGD PMID:11668593 MGI:2151300 NCBI chr20:3,829,324...3,859,022
Ensembl chr20:3,830,164...3,859,018
JBrowse link
G Col2a1 collagen type II alpha 1 chain involved_in IEP
IEA
ISO
GO_REF:0000107
MGI:2152978 (MGI:3697977|PMID:11680679), (MGI:77563|PMID:7590256), (PMID:9119111)
Ensembl
RGD
PMID:7590256 PMID:9119111 PMID:11680679, PMID:21627568 GO_REF:0000107 MGI:3697977 MGI:77563, RGD:5134342 NCBI chr 7:139,454,945...139,484,403
Ensembl chr 7:139,455,242...139,483,997
JBrowse link
G Col9a1 collagen type IX alpha 1 chain IEP RGD PMID:8992886 RGD:1600950 NCBI chr 9:30,419,001...30,502,307
Ensembl chr 9:30,419,001...30,502,298
JBrowse link
G Creb3l2 cAMP responsive element binding protein 3-like 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:4438315|PMID:19767744)
UniProt
RGD
PMID:19767744 GO_REF:0000024 MGI:4438315 NCBI chr 4:64,869,285...64,981,519
Ensembl chr 4:64,869,026...64,981,384
JBrowse link
G Cst5 cystatin D ISO (MGI:2681375|PMID:13679380) RGD PMID:13679380 MGI:2681375 NCBI chr 3:144,569,502...144,574,112
Ensembl chr 3:144,569,502...144,574,112
JBrowse link
G Cytl1 cytokine like 1 ISO (MGI:3758399|PMID:17644814) RGD PMID:17644814 MGI:3758399 NCBI chr14:77,805,137...77,810,147
Ensembl chr14:77,805,130...77,810,147
JBrowse link
G Ext1 exostosin glycosyltransferase 1 ISO (MGI:4431165|PMID:20080592), (MGI:4834113|PMID:20404326), (MGI:5487694|PMID:23458899), (MGI:6407539|PMID:28768899) RGD PMID:20080592 PMID:20404326 PMID:23458899 PMID:28768899 MGI:4431165 MGI:4834113 MGI:5487694 MGI:6407539 NCBI chr 7:92,605,008...92,881,392
Ensembl chr 7:92,605,728...92,882,068
JBrowse link
G Fgf9 fibroblast growth factor 9 ISO MGI:2135961|MGI:95522 (MGI:3716021|PMID:17544391) RGD PMID:17544391 MGI:3716021 NCBI chr15:38,341,657...38,386,945
Ensembl chr15:38,341,089...38,387,316
JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 ISO MGI:104723 (MGI:3716021|PMID:17544391) RGD PMID:17544391 MGI:3716021 NCBI chr16:71,265,390...71,319,046
Ensembl chr16:71,266,248...71,319,449
JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:1915509 (MGI:5473722|PMID:23333501) RGD PMID:23333501 MGI:5473722 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gpld1 glycosylphosphatidylinositol specific phospholipase D1 involved_in ISO
ISS
(PMID:15946906)
GO_REF:0000024
RGD
UniProt
PMID:15946906 GO_REF:0000024 NCBI chr17:42,085,027...42,131,344
Ensembl chr17:42,085,028...42,127,678
JBrowse link
G Hes5 hes family bHLH transcription factor 5 NOT
NOT|involved_in
ISS
ISO
GO_REF:0000024
(MGI:5285816|PMID:17093926)
UniProt
RGD
PMID:17093926 GO_REF:0000024 MGI:5285816 NCBI chr 5:172,364,421...172,365,188
Ensembl chr 5:172,364,421...172,365,188
JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO
ISS
(PMID:21484705)
GO_REF:0000024
RGD
UniProt
PMID:21484705 GO_REF:0000024 NCBI chr 7:65,159,944...65,275,408
Ensembl chr 7:65,159,944...65,275,408
JBrowse link
G Hspg2 heparan sulfate proteoglycan 2 ISO MGI:1934891 (MGI:1930356|PMID:10545953) RGD PMID:10545953 MGI:1930356 NCBI chr 5:155,812,096...155,913,751 JBrowse link
G Ift80 intraflagellar transport 80 ISO MGI:95728 (MGI:5473722|PMID:23333501) RGD PMID:23333501 MGI:5473722 NCBI chr 2:165,506,878...165,600,748
Ensembl chr 2:165,505,810...165,600,748
JBrowse link
G Mapk14 mitogen activated protein kinase 14 involved_in IEA
ISO
GO_REF:0000107
(MGI:3758399|PMID:17644814), (MGI:5487758|PMID:17202865)
Ensembl
RGD
PMID:17202865 PMID:17644814 GO_REF:0000107 MGI:3758399 MGI:5487758 NCBI chr20:5,933,290...5,995,137
Ensembl chr20:5,933,303...5,995,137
JBrowse link
G Matn1 matrilin 1 ISO MGI:2153042|MGI:3663272 (MGI:3655339|PMID:16877353) RGD PMID:16877353 MGI:3655339 NCBI chr 5:149,077,412...149,086,957
Ensembl chr 5:149,077,412...149,086,957
JBrowse link
G Mef2c myocyte enhancer factor 2C ISO MGI:99533 (MGI:3701381|PMID:17336904) RGD PMID:17336904 MGI:3701381 NCBI chr 2:11,658,534...11,822,788
Ensembl chr 2:11,658,568...11,822,787
JBrowse link
G Mef2d myocyte enhancer factor 2D involved_in IEA
ISO
GO_REF:0000107
MGI:99458 (MGI:3701381|PMID:17336904)
Ensembl
RGD
PMID:17336904 GO_REF:0000107 MGI:3701381 NCBI chr 2:187,511,775...187,541,285
Ensembl chr 2:187,512,164...187,538,026
JBrowse link
G Mustn1 musculoskeletal, embryonic nuclear protein 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:6,962,737...6,964,987
Ensembl chr16:6,962,722...6,964,989
JBrowse link
G Nfib nuclear factor I/B involved_in ISS
ISO
GO_REF:0000024
(MGI:5284771|PMID:17904922)
UniProt
RGD
PMID:17904922 GO_REF:0000024 MGI:5284771 NCBI chr 5:100,436,343...100,647,962
Ensembl chr 5:100,439,082...100,647,727
JBrowse link
G Osr1 odd-skipped related transcription factor 1 ISO UniProtKB:Q91ZD1 (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667
JBrowse link
G Osr2 odd-skipped related transciption factor 2 ISO UniProtKB:Q9WVG7 (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 7:74,047,820...74,055,096
Ensembl chr 7:74,047,814...74,055,256
JBrowse link
G Prkca protein kinase C, alpha ISO (MGI:3758399|PMID:17644814) RGD PMID:17644814 MGI:3758399 NCBI chr10:96,186,509...96,585,168
Ensembl chr10:96,191,133...96,584,947
JBrowse link
G Pth1r parathyroid hormone 1 receptor ISO MGI:2154519|MGI:99829 (MGI:3620436|PMID:16476422), (MGI:3624906|PMID:9832460) RGD PMID:9832460 PMID:16476422 MGI:3620436 MGI:3624906 NCBI chr 8:118,984,531...119,012,803
Ensembl chr 8:118,988,053...119,012,671
JBrowse link
G Runx1 RUNX family transcription factor 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr11:32,765,147...33,003,061
Ensembl chr11:32,769,165...33,003,021
JBrowse link
G Runx2 RUNX family transcription factor 2 involved_in ISO
IBA
MGI:102672|MGI:2176466|MGI:97801 (MGI:3620436|PMID:16476422), (MGI:5462316|PMID:22916278)
PMID:21873635
RGD PMID:16476422 PMID:22916278, PMID:21873635, PMID:21873635 MGI:3620436 MGI:5462316, RGD:13792537, RGD:13792537 NCBI chr 9:18,564,743...18,773,092
Ensembl chr 9:18,564,927...18,773,092
JBrowse link
G Runx3 RUNX family transcription factor 3 involved_in ISO
IBA
MGI:99829 (MGI:5462316|PMID:22916278)
PMID:21873635
RGD PMID:22916278, PMID:21873635, PMID:21873635 MGI:5462316, RGD:13792537, RGD:13792537 NCBI chr 5:153,507,093...153,531,137
Ensembl chr 5:153,507,093...153,531,137
JBrowse link
G Scx scleraxis bHLH transcription factor ISO (MGI:4418577|PMID:20059955) RGD PMID:20059955 MGI:4418577 NCBI chr 7:117,519,075...117,521,093
Ensembl chr 7:117,519,075...117,521,093
JBrowse link
G Shox2 short stature homeobox 2 ISO (MGI:5462316|PMID:22916278) RGD PMID:22916278 MGI:5462316 NCBI chr 2:164,118,175...164,126,783
Ensembl chr 2:164,118,191...164,126,783
JBrowse link
G Six2 SIX homeobox 2 ISO MGI:3691857 (MGI:4822095|PMID:20515681) RGD PMID:20515681 MGI:4822095 NCBI chr 6:8,952,572...8,955,893
Ensembl chr 6:8,952,572...8,956,276
JBrowse link
G Slc39a14 solute carrier family 39 member 14 ISO (MGI:4950776|PMID:21445361) RGD PMID:21445361 MGI:4950776 NCBI chr15:51,982,872...52,029,841
Ensembl chr15:51,982,982...52,029,816
JBrowse link
G Snx19 sorting nexin 19 involved_in ISO (PMID:19877062)
(MGI:5605298|PMID:19877062)
RGD PMID:19877062 MGI:5605298 NCBI chr 8:31,497,034...31,534,077
Ensembl chr 8:31,497,639...31,534,077
JBrowse link
G Sox5 SRY-box transcription factor 5 ISS
ISO
GO_REF:0000024
(MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235)
UniProt
RGD
PMID:11702786 PMID:14993235 GO_REF:0000024 MGI:2446758 MGI:3037234 NCBI chr 4:178,062,267...179,031,991
Ensembl chr 4:178,066,165...178,441,547
JBrowse link
G Sox6 SRY-box transcription factor 6 involved_in ISS
ISO
GO_REF:0000024
(MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235)
UniProt
RGD
PMID:11702786 PMID:14993235 GO_REF:0000024 MGI:2446758 MGI:3037234 NCBI chr 1:185,631,702...186,186,192
Ensembl chr 1:185,673,177...186,182,829
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(MGI:3044231|PMID:15132997), (MGI:6414736|PMID:29644115), (MGI:6414737|PMID:32103177), (PMID:9119111)
UniProt
RGD
PMID:9119111 PMID:15132997 PMID:29644115 PMID:32103177, PMID:21873635, PMID:21873635 GO_REF:0000024 MGI:3044231 MGI:6414736 MGI:6414737, RGD:13792537, RGD:13792537 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in ISO
ISS
(PMID:15040835)
GO_REF:0000024
RGD
UniProt
PMID:15040835 GO_REF:0000024 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
G Tgfbi transforming growth factor, beta induced IEP RGD PMID:16546826 RGD:1599388 NCBI chr17:8,400,123...8,429,338
Ensembl chr17:8,400,146...8,429,338
JBrowse link
G Trps1 transcriptional repressor GATA binding 1 ISO MGI:107191|MGI:95688 (MGI:3819026|PMID:18363966) RGD PMID:18363966 MGI:3819026 NCBI chr 7:90,085,895...90,320,430
Ensembl chr 7:90,090,828...90,318,221
JBrowse link
G Wnt10b Wnt family member 10B involved_in ISO (PMID:15135146) RGD PMID:15135146 NCBI chr 7:140,448,284...140,466,159
Ensembl chr 7:140,448,465...140,454,268
JBrowse link
G Wnt2b Wnt family member 2B involved_in ISO (PMID:15135146) RGD PMID:15135146 NCBI chr 2:207,433,771...207,457,094
Ensembl chr 2:207,440,886...207,455,258
JBrowse link
G Wnt5b Wnt family member 5B involved_in ISO (PMID:15135146) RGD PMID:15135146 NCBI chr 4:151,500,962...151,516,894
Ensembl chr 4:151,500,957...151,516,894
JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (PMID:17202865) RGD PMID:17202865 NCBI chr 4:122,994,425...123,040,609
Ensembl chr 4:122,994,425...123,040,609
JBrowse link
chondrocyte differentiation involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin2 axin 2 involved_in IEA
ISO
GO_REF:0000107
MGI:3579503 (MGI:4818263|PMID:19623616)
Ensembl
RGD
PMID:19623616 GO_REF:0000107 MGI:4818263 NCBI chr10:97,212,483...97,238,824
Ensembl chr10:97,212,432...97,239,642
JBrowse link
G Ihh Indian hedgehog signaling molecule ISO (MGI:5698232|PMID:25639508) RGD PMID:25639508 MGI:5698232 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
JBrowse link
G Scube2 signal peptide, CUB domain and EGF like domain containing 2 ISO MGI:5698367 (MGI:5698232|PMID:25639508) RGD PMID:25639508 MGI:5698232 NCBI chr 1:174,428,056...174,495,356
Ensembl chr 1:174,428,699...174,495,258
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO
ISS
(PMID:20676705)
GO_REF:0000024
RGD
UniProt
PMID:20676705 GO_REF:0000024 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
G Trip11 thyroid hormone receptor interactor 11 ISO MGI:4829605 (MGI:4822550|PMID:20089971) RGD PMID:20089971 MGI:4822550 NCBI chr 6:125,741,520...125,812,926
Ensembl chr 6:125,742,796...125,812,517
JBrowse link
chondrocyte hypertrophy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mex3c mex-3 RNA binding family member C ISO MGI:3764947 (MGI:5446032|PMID:22357625) RGD PMID:22357625 MGI:5446032 NCBI chr18:69,549,937...69,571,736
Ensembl chr18:69,549,937...69,571,736
JBrowse link
G Sox9 SRY-box transcription factor 9 ISS
ISO
GO_REF:0000024
(MGI:4950303|PMID:21367821)
UniProt
RGD
PMID:21367821 GO_REF:0000024 MGI:4950303 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
coronal suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr2 fibroblast growth factor receptor 2 ISO MGI:3603464 (MGI:3848571|PMID:19389359) RGD PMID:19389359 MGI:3848571 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
cranial suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in IEA
ISO
GO_REF:0000107
(MGI:1203304|PMID:9477322)
Ensembl
RGD
PMID:9477322 GO_REF:0000107 MGI:1203304 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Fgf4 fibroblast growth factor 4 ISO (MGI:1203304|PMID:9477322) RGD PMID:9477322 MGI:1203304 NCBI chr 1:218,024,537...218,029,539
Ensembl chr 1:218,025,810...218,027,220
JBrowse link
G Igf1 insulin-like growth factor 1 IEP RGD PMID:10597685 RGD:12910129 NCBI chr 7:28,412,123...28,491,815
Ensembl chr 7:28,412,198...28,486,609
JBrowse link
G Insig1 insulin induced gene 1 ISO MGI:1920249 (MGI:3689278|PMID:16955138) RGD PMID:16955138 MGI:3689278 NCBI chr 4:342,302...350,515
Ensembl chr 4:342,302...350,515
JBrowse link
G Insig2 insulin induced gene 2 ISO MGI:1916289 (MGI:3689278|PMID:16955138) RGD PMID:16955138 MGI:3689278 NCBI chr13:37,264,818...37,292,718
Ensembl chr13:37,266,312...37,287,458
JBrowse link
G Twist1 twist family bHLH transcription factor 1 ISO MGI:1857265|MGI:3038818 (MGI:2387743|PMID:12221714), (MGI:3042355|PMID:15030764), (MGI:3623529|PMID:16502419) RGD PMID:12221714 PMID:15030764 PMID:16502419 MGI:2387743 MGI:3042355 MGI:3623529 NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214
JBrowse link
craniofacial suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxn3 forkhead box N3 ISO (MGI:4835344|PMID:20691664) RGD PMID:20691664 MGI:4835344 NCBI chr 6:123,183,720...123,577,719
Ensembl chr 6:123,187,726...123,577,695
JBrowse link
G Frem1 Fras1 related extracellular matrix 1 involved_in ISO (PMID:21931569) RGD PMID:21931569 NCBI chr 5:101,018,009...101,166,794
Ensembl chr 5:101,020,448...101,166,651
JBrowse link
G Megf8 multiple EGF-like-domains 8 involved_in IEA
ISO
GO_REF:0000107
(PMID:23063620)
Ensembl
RGD
PMID:23063620 GO_REF:0000107 NCBI chr 1:82,184,671...82,234,045
Ensembl chr 1:82,185,034...82,234,045
JBrowse link
G Mmp14 matrix metallopeptidase 14 ISO MGI:1276107 (MGI:3771253|PMID:18022611) RGD PMID:18022611 MGI:3771253 NCBI chr15:33,074,441...33,083,666
Ensembl chr15:33,074,441...33,083,655
JBrowse link
G Mmp16 matrix metallopeptidase 16 IEA
ISO
GO_REF:0000107
MGI:2445723 (MGI:3771253|PMID:18022611)
Ensembl
RGD
PMID:18022611 GO_REF:0000107 MGI:3771253 NCBI chr 5:31,568,344...31,818,368
Ensembl chr 5:31,568,419...31,810,484
JBrowse link
G Neurog1 neurogenin 1 involved_in ISO UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067) RGD PMID:23419067 NCBI chr17:9,154,656...9,156,175
Ensembl chr17:9,154,656...9,156,175
JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in ISO (PMID:17503333) RGD PMID:17503333 NCBI chr 9:38,469,784...38,496,185
Ensembl chr 9:38,470,298...38,495,176
JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:9,234,948...9,239,266
Ensembl chr17:9,236,249...9,239,265
JBrowse link
G Tmem107 transmembrane protein 107 ISO
IEA
MGI:5007367 (MGI:6115041|PMID:28954202)
GO_REF:0000107
RGD
Ensembl
PMID:28954202 GO_REF:0000107 MGI:6115041 NCBI chr10:55,653,694...55,656,270
Ensembl chr10:55,653,946...55,656,270
JBrowse link
deltoid tuberosity development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:4418577|PMID:20059955)
Ensembl
UniProt
RGD
PMID:20059955 GO_REF:0000024 GO_REF:0000107 MGI:4418577 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Pitx2 paired-like homeodomain 2 involved_in ISO (PMID:18312615)
(MGI:3794216|PMID:18312615)
RGD PMID:18312615 MGI:3794216 NCBI chr 2:233,602,732...233,621,059
Ensembl chr 2:233,602,732...233,621,129
JBrowse link
G Scx scleraxis bHLH transcription factor ISO (MGI:3715390|PMID:17567668), (MGI:4418577|PMID:20059955) RGD PMID:17567668 PMID:20059955 MGI:3715390 MGI:4418577 NCBI chr 7:117,519,075...117,521,093
Ensembl chr 7:117,519,075...117,521,093
JBrowse link
embryonic cranial skeleton morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alx3 ALX homeobox 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:210,376,510...210,386,928
Ensembl chr 2:210,381,829...210,386,928
JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in IEA
ISO
GO_REF:0000107
MGI:1857137 (MGI:1095762|PMID:9268572)
Ensembl
RGD
PMID:9268572 GO_REF:0000107 MGI:1095762 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Dlx2 distal-less homeobox 2 involved_in IEA
ISO
GO_REF:0000107
MGI:1857828 (MGI:76977|PMID:7590232)
Ensembl
RGD
PMID:7590232 GO_REF:0000107 MGI:76977 NCBI chr 3:58,180,088...58,181,971
Ensembl chr 3:58,180,088...58,181,971
JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 involved_in ISO
ISS
(PMID:24360810)
GO_REF:0000024
RGD
UniProt
PMID:24360810 GO_REF:0000024 NCBI chr10:108,415,201...108,425,195
Ensembl chr10:108,415,202...108,425,206
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 involved_in ISO (PMID:7874170), (PMID:7987400) RGD PMID:7874170 PMID:7987400 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Foxc2 forkhead box C2 ISO MGI:1857865 (MGI:86990|PMID:9106663) RGD PMID:9106663 MGI:86990 NCBI chr19:53,044,379...53,047,081
Ensembl chr19:53,044,379...53,047,081
JBrowse link
G Gas1 growth arrest-specific 1 ISO MGI:2388397|MGI:98297 (MGI:3713422|PMID:17525797) RGD PMID:17525797 MGI:3713422 NCBI chr17:4,846,116...4,849,350
Ensembl chr17:4,846,789...4,847,940
JBrowse link
G Gnas GNAS complex locus ISO MGI:3043361 (MGI:3619837|PMID:15797856) RGD PMID:15797856 MGI:3619837 NCBI chr 3:172,374,957...172,434,988
Ensembl chr 3:172,374,957...172,428,483
Ensembl chr 3:172,374,957...172,428,483
JBrowse link
G Grhl2 grainyhead-like transcription factor 2 ISO MGI:4942413 (MGI:4943100|PMID:21377456) RGD PMID:21377456 MGI:4943100 NCBI chr 7:76,058,623...76,197,360
Ensembl chr 7:76,059,386...76,197,856
JBrowse link
G Ift140 intraflagellar transport 140 ISO MGI:4458412 (MGI:5505384|PMID:23469164) RGD PMID:23469164 MGI:5505384 NCBI chr10:14,373,668...14,461,509
Ensembl chr10:14,373,679...14,461,160
JBrowse link
G Irx5 iroquois homeobox 5 involved_in ISO (PMID:22581230) RGD PMID:22581230 NCBI chr19:16,415,813...16,421,088
Ensembl chr19:16,415,636...16,421,191
JBrowse link
G Mmp14 matrix metallopeptidase 14 ISO MGI:1276107 (MGI:3771253|PMID:18022611) RGD PMID:18022611 MGI:3771253 NCBI chr15:33,074,441...33,083,666
Ensembl chr15:33,074,441...33,083,655
JBrowse link
G Mmp16 matrix metallopeptidase 16 involved_in IEA
ISO
GO_REF:0000107
MGI:2445723 (MGI:3771253|PMID:18022611)
Ensembl
RGD
PMID:18022611 GO_REF:0000107 MGI:3771253 NCBI chr 5:31,568,344...31,818,368
Ensembl chr 5:31,568,419...31,810,484
JBrowse link
G Nipbl NIPBL, cohesin loading factor ISO MGI:4332250 (MGI:4367301|PMID:19763162) RGD PMID:19763162 MGI:4367301 NCBI chr 2:57,508,830...57,676,197
Ensembl chr 2:57,509,428...57,600,820
JBrowse link
G Nodal nodal growth differentiation factor ISO MGI:2158732 (MGI:2155575|PMID:11311163) RGD PMID:11311163 MGI:2155575 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Pax5 paired box 5 ISO MGI:2386577 (MGI:5476374|PMID:23349049) RGD PMID:23349049 MGI:5476374 NCBI chr 5:60,007,587...60,191,973
Ensembl chr 5:60,007,587...60,191,941
JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in IEA
ISS
IBA
ISO
GO_REF:0000107
GO_REF:0000024
PMID:21873635
(MGI:894516|PMID:9226440)
Ensembl
UniProt
RGD
PMID:9226440, PMID:21873635, PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:894516, RGD:13792537, RGD:13792537 NCBI chr14:35,527,926...35,581,130
Ensembl chr14:35,527,927...35,581,031
JBrowse link
G Prrx1 paired related homeobox 1 ISO MGI:1857640|MGI:98218 (MGI:1306737|PMID:9729491), (MGI:73363|PMID:7758948) RGD PMID:7758948 PMID:9729491 MGI:1306737 MGI:73363 NCBI chr13:81,147,038...81,215,559
Ensembl chr13:81,147,348...81,214,546
JBrowse link
G Prrx2 paired related homeobox 2 ISO MGI:97712 (MGI:1306737|PMID:9729491) RGD PMID:9729491 MGI:1306737 NCBI chr 3:9,681,871...9,718,051
Ensembl chr 3:9,681,871...9,718,051
JBrowse link
G Runx2 RUNX family transcription factor 2 ISO
IEA
MGI:104685|MGI:98872 (MGI:3042355|PMID:15030764)
GO_REF:0000107
RGD
Ensembl
PMID:15030764 GO_REF:0000107 MGI:3042355 NCBI chr 9:18,564,743...18,773,092
Ensembl chr 9:18,564,927...18,773,092
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase ISO MGI:4437211 (MGI:4431136|PMID:20133625) RGD PMID:20133625 MGI:4431136 NCBI chr 8:118,802,478...118,888,224
Ensembl chr 8:118,803,075...118,888,224
JBrowse link
G Six1 SIX homeobox 1 ISO MGI:106034 (MGI:4822095|PMID:20515681) RGD PMID:20515681 MGI:4822095 NCBI chr 6:95,929,060...95,934,296
Ensembl chr 6:95,929,060...95,934,296
JBrowse link
G Six2 SIX homeobox 2 ISO MGI:3691857 (MGI:4822095|PMID:20515681) RGD PMID:20515681 MGI:4822095 NCBI chr 6:8,952,572...8,955,893
Ensembl chr 6:8,952,572...8,956,276
JBrowse link
G Six4 SIX homeobox 4 ISO MGI:102780 (MGI:4822095|PMID:20515681) RGD PMID:20515681 MGI:4822095 NCBI chr 6:95,984,868...95,999,709
Ensembl chr 6:95,984,868...95,998,529
JBrowse link
G Slc39a1 solute carrier family 39 member 1 ISO MGI:2147269|MGI:3625131 (MGI:3624433|PMID:16652366) RGD PMID:16652366 MGI:3624433 NCBI chr 2:189,609,766...189,615,367
Ensembl chr 2:189,609,800...189,615,366
JBrowse link
G Slc39a3 solute carrier family 39 member 3 ISO MGI:1353474 (MGI:3624433|PMID:16652366) RGD PMID:16652366 MGI:3624433 NCBI chr 7:11,545,073...11,551,074
Ensembl chr 7:11,545,024...11,553,370
JBrowse link
G Smad2 SMAD family member 2 ISO MGI:1201674 (MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:3618021 NCBI chr18:72,550,107...72,612,078
Ensembl chr18:72,550,219...72,612,078
JBrowse link
G Smad3 SMAD family member 3 ISO MGI:108051 (MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:3618021 NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349
JBrowse link
G Tbx1 T-box transcription factor 1 involved_in ISS
ISO
GO_REF:0000024
MGI:2179191 (MGI:3050165|PMID:15190012)
UniProt
RGD
PMID:15190012 GO_REF:0000024 MGI:3050165 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
G Tbx15 T-box transcription factor 15 ISO MGI:1856015 (MGI:3604843|PMID:15728667) RGD PMID:15728667 MGI:3604843 NCBI chr 2:201,289,042...201,390,752
Ensembl chr 2:201,289,357...201,390,745
JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISS
ISO
GO_REF:0000024
MGI:1888387 (MGI:80519|PMID:8622766), (MGI:80520|PMID:8622765)
UniProt
RGD
PMID:8622765 PMID:8622766 GO_REF:0000024 MGI:80519 MGI:80520 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 ISO MGI:2680164 (MGI:3701721|PMID:16806156) RGD PMID:16806156 MGI:3701721 NCBI chr 5:63,056,071...63,119,635
Ensembl chr 5:63,050,758...63,119,635
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 ISO (MGI:2678274|PMID:12975342) RGD PMID:12975342 MGI:2678274 NCBI chr 8:124,310,288...124,399,345
Ensembl chr 8:124,312,754...124,399,494
JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in ISO (PMID:8988166), (PMID:8988167)
MGI:99829 (MGI:1100098|PMID:8988167), (MGI:3042355|PMID:15030764)
RGD PMID:8988166 PMID:8988167 PMID:15030764 MGI:1100098 MGI:3042355 NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214
JBrowse link
G Twist2 twist family bHLH transcription factor 2 ISO MGI:99829 (MGI:3042355|PMID:15030764) RGD PMID:15030764 MGI:3042355 NCBI chr 9:98,924,134...98,968,510
Ensembl chr 9:98,924,134...98,968,510
JBrowse link
G Wdr19 WD repeat domain 19 ISO MGI:5315747 (MGI:5314316|PMID:22228095) RGD PMID:22228095 MGI:5314316 NCBI chr14:44,705,012...44,767,120
Ensembl chr14:44,705,012...44,767,120
JBrowse link
G Wnt9b Wnt family member 9B ISO MGI:1856821|MGI:3526437 (MGI:3588895|PMID:16054034), (MGI:3696935|PMID:16998816) RGD PMID:16054034 PMID:16998816 MGI:3588895 MGI:3696935 NCBI chr10:91,785,892...91,808,061
Ensembl chr10:91,785,893...91,807,937
JBrowse link
embryonic neurocranium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 ISO MGI:1917550 (MGI:5796907|PMID:27395007) RGD PMID:27395007 MGI:5796907 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
JBrowse link
G Fuz fuzzy planar cell polarity protein ISO MGI:3531090|MGI:99604 (MGI:5796907|PMID:27395007) RGD PMID:27395007 MGI:5796907 NCBI chr 1:100,891,832...100,896,811
Ensembl chr 1:100,891,866...100,896,807
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:1856276 (MGI:5796907|PMID:27395007) RGD PMID:27395007 MGI:5796907 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:82,124,358...82,127,182
Ensembl chr 4:82,125,406...82,127,066
JBrowse link
G Med12 mediator complex subunit 12 ISO MGI:4839485 (MGI:4839544|PMID:20589884) RGD PMID:20589884 MGI:4839544 NCBI chr  X:71,174,653...71,197,812
Ensembl chr  X:71,174,699...71,197,812
JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like ISO (MGI:5468075|PMID:23267094) RGD PMID:23267094 MGI:5468075 NCBI chr 1:40,529,092...40,719,232
Ensembl chr 1:40,529,045...40,719,391
JBrowse link
G Ndst1 N-deacetylase and N-sulfotransferase 1 ISO MGI:3589383 (MGI:3588476|PMID:16020517) RGD PMID:16020517 MGI:3588476 NCBI chr18:55,951,497...56,014,107
Ensembl chr18:55,955,389...55,992,885
JBrowse link
G Tgfb2 transforming growth factor, beta 2 IDA RGD PMID:11002343 RGD:1579866 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
G Tgfb3 transforming growth factor, beta 3 IDA RGD PMID:11002343 RGD:1579866 NCBI chr 6:109,913,757...109,936,217
Ensembl chr 6:109,913,757...109,935,533
JBrowse link
G Tulp3 TUB like protein 3 ISO MGI:2388066 (MGI:3841503|PMID:19286674) RGD PMID:19286674 MGI:3841503 NCBI chr 4:161,636,084...161,677,807
Ensembl chr 4:161,637,892...161,658,519
JBrowse link
embryonic skeletal joint development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 ISO MGI:2682061 (MGI:4946896|PMID:21185280) RGD PMID:21185280 MGI:4946896 NCBI chr 7:92,605,008...92,881,392
Ensembl chr 7:92,605,728...92,882,068
JBrowse link
G Ihh Indian hedgehog signaling molecule ISO MGI:1934258 (MGI:3695832|PMID:17191253) RGD PMID:17191253 MGI:3695832 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
JBrowse link
G Osr1 odd-skipped related transcription factor 1 ISO UniProtKB:Q91ZD1 (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667
JBrowse link
G Osr2 odd-skipped related transciption factor 2 ISO UniProtKB:Q9WVG7 (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 7:74,047,820...74,055,096
Ensembl chr 7:74,047,814...74,055,256
JBrowse link
G Slc2a10 solute carrier family 2 member 10 acts_upstream_of_or_within ISO (PMID:18565096) RGD PMID:18565096 NCBI chr 3:162,182,156...162,194,610
Ensembl chr 3:162,181,974...162,194,804
JBrowse link
embryonic skeletal joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 ISO MGI:1856035|MGI:1856036 RGD MGI:48782
G Bmp4 bone morphogenetic protein 4 involved_in IEA
ISO
GO_REF:0000107
MGI:103302|MGI:1857137 (MGI:1270933|PMID:9664686)
Ensembl
RGD
PMID:9664686 GO_REF:0000107 MGI:1270933 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Bmp7 bone morphogenetic protein 7 ISO MGI:1934010|MGI:88180 (MGI:1270933|PMID:9664686) RGD PMID:9664686 MGI:1270933 NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399
JBrowse link
G Col2a1 collagen type II alpha 1 chain involved_in ISO
IEA
(PMID:16752401)
GO_REF:0000107
RGD
Ensembl
PMID:16752401 GO_REF:0000107 NCBI chr 7:139,454,945...139,484,403
Ensembl chr 7:139,455,242...139,483,997
JBrowse link
G Hoxa11 homeobox A11 ISO MGI:96193|MGI:96203 (MGI:4867119|PMID:20978074) RGD PMID:20978074 MGI:4867119 NCBI chr 4:82,296,888...82,301,419
Ensembl chr 4:82,298,152...82,300,503
Ensembl chr 4:82,298,152...82,300,503
JBrowse link
G Hoxc11 homeobox C11 ISO MGI:96172|MGI:96203 (MGI:4867119|PMID:20978074) RGD PMID:20978074 MGI:4867119 NCBI chr 7:144,565,392...144,568,580
Ensembl chr 7:144,565,392...144,567,580
JBrowse link
G Hoxd11 homeobox D11 ISO MGI:96172|MGI:96193 (MGI:4867119|PMID:20978074) RGD PMID:20978074 MGI:4867119 NCBI chr 3:61,604,256...61,606,874
Ensembl chr 3:61,604,672...61,606,400
JBrowse link
G Hyal1 hyaluronidase 1 involved_in IEA
ISO
GO_REF:0000107
MGI:2658730 (MGI:3836537|PMID:18772348)
Ensembl
RGD
PMID:18772348 GO_REF:0000107 MGI:3836537 NCBI chr 8:116,332,834...116,337,522
Ensembl chr 8:116,332,796...116,335,435
JBrowse link
G Nog noggin involved_in ISO
IEA
(PMID:16151340)
GO_REF:0000107
RGD
Ensembl
PMID:16151340 GO_REF:0000107 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link
G Osr1 odd-skipped related transcription factor 1 ISO UniProtKB:Q91ZD1 (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667
JBrowse link
G Osr2 odd-skipped related transciption factor 2 ISO (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 7:74,047,820...74,055,096
Ensembl chr 7:74,047,814...74,055,256
JBrowse link
G Shox2 short stature homeobox 2 ISO MGI:3626291 (MGI:3805084|PMID:18514492) RGD PMID:18514492 MGI:3805084 NCBI chr 2:164,118,175...164,126,783
Ensembl chr 2:164,118,191...164,126,783
JBrowse link
embryonic skeletal limb joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 involved_in IEA
ISO
GO_REF:0000107
UniProtKB:Q91ZD1 (MGI:4950000|PMID:21262216)
Ensembl
RGD
PMID:21262216 GO_REF:0000107 MGI:4950000 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Osr1 odd-skipped related transcription factor 1 ISO UniProtKB:Q91ZD1 (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667
JBrowse link
G Osr2 odd-skipped related transciption factor 2 ISO UniProtKB:Q9WVG7 (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 7:74,047,820...74,055,096
Ensembl chr 7:74,047,814...74,055,256
JBrowse link
embryonic skeletal system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2a activin A receptor type 2A involved_in IEA
ISO
GO_REF:0000107
MGI:1861779 (MGI:71660|PMID:7885474)
Ensembl
RGD
PMID:7885474 GO_REF:0000107 MGI:71660 NCBI chr 3:32,947,901...33,034,598
Ensembl chr 3:32,947,378...33,034,282
JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger ISO MGI:99161 (MGI:1932296|PMID:11290297) RGD PMID:11290297 MGI:1932296 NCBI chr17:85,360,439...85,370,283
Ensembl chr17:85,364,483...85,368,208
JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO MGI:2158495 (MGI:3640733|PMID:16712836) RGD PMID:16712836 MGI:3640733 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Cdk20 cyclin-dependent kinase 20 ISO MGI:6113512 (MGI:5912686|PMID:28817564) RGD PMID:28817564 MGI:5912686 NCBI chr17:1,935,900...1,942,867
Ensembl chr17:1,936,163...1,942,865
JBrowse link
G Col1a1 collagen type I alpha 1 chain involved_in ISO (PMID:18553566) RGD PMID:18553566 NCBI chr10:82,745,801...82,762,790
Ensembl chr10:82,745,801...82,762,789
JBrowse link
G Deaf1 DEAF1 transcription factor involved_in ISS
ISO
GO_REF:0000024
(MGI:3029622|PMID:14966286)
UniProt
RGD
PMID:14966286 GO_REF:0000024 MGI:3029622 NCBI chr 1:214,283,787...214,317,466
Ensembl chr 1:214,283,790...214,317,466
JBrowse link
G Dlk1 delta like non-canonical Notch ligand 1 ISO (MGI:3838429|PMID:19247431) RGD PMID:19247431 MGI:3838429 NCBI chr 6:133,576,513...133,583,751
Ensembl chr 6:133,552,821...133,583,751
JBrowse link
G Dlx1 distal-less homeobox 1 involved_in IEA
ISO
GO_REF:0000107
MGI:1857826|MGI:94902 (MGI:87771|PMID:9187081)
Ensembl
RGD
PMID:9187081 GO_REF:0000107 MGI:87771 NCBI chr 3:58,164,931...58,169,521
Ensembl chr 3:58,164,931...58,169,521
JBrowse link
G Dlx2 distal-less homeobox 2 ISO MGI:1857828|MGI:94901 (MGI:87771|PMID:9187081) RGD PMID:9187081 MGI:87771 NCBI chr 3:58,180,088...58,181,971
Ensembl chr 3:58,180,088...58,181,971
JBrowse link
G Dmrt2 doublesex and mab-3 related transcription factor 2 ISO MGI:3512139 (MGI:3613100|PMID:16387292) RGD PMID:16387292 MGI:3613100 NCBI chr 1:243,662,819...243,669,312
Ensembl chr 1:243,662,823...243,669,312
JBrowse link
G Etl4 enhancer trap locus 4 ISO (MGI:3614233|PMID:16204209) RGD PMID:16204209 MGI:3614233 NCBI chr17:87,173,265...87,681,268
Ensembl chr17:87,274,944...87,681,317
JBrowse link
G Fgf9 fibroblast growth factor 9 ISO MGI:2135961 (MGI:3716021|PMID:17544391) RGD PMID:17544391 MGI:3716021 NCBI chr15:38,341,657...38,386,945
Ensembl chr15:38,341,089...38,387,316
JBrowse link
G Gas1 growth arrest-specific 1 ISO MGI:3711070|MGI:98297 (MGI:3710451|PMID:17504941) RGD PMID:17504941 MGI:3710451 NCBI chr17:4,846,116...4,849,350
Ensembl chr17:4,846,789...4,847,940
JBrowse link
G Hoxa3 homeobox A3 ISO MGI:96207 (MGI:67616|PMID:7913519) RGD PMID:7913519 MGI:67616 NCBI chr 4:82,137,802...82,181,836
Ensembl chr 4:82,138,683...82,141,385
JBrowse link
G Hoxa5 homeo box A5 ISO MGI:96186|MGI:96196 (MGI:3720535|PMID:17626057) RGD PMID:17626057 MGI:3720535
G Hoxa6 homeobox A6 ISO MGI:96187|MGI:96197 (MGI:3720535|PMID:17626057) RGD PMID:17626057 MGI:3720535 NCBI chr 4:82,173,478...82,183,597
Ensembl chr 4:82,173,293...82,263,302
JBrowse link
G Hoxa9 homeobox A9 ISO MGI:2150411|MGI:96190|MGI:96199|MGI:96210 (MGI:3720535|PMID:17626057), (MGI:78984|PMID:8625797), (MGI:85243|PMID:9013929) RGD PMID:8625797 PMID:9013929 PMID:17626057 MGI:3720535 MGI:78984 MGI:85243
G Hoxb5 homeo box B5 ISO MGI:96177|MGI:96196 (MGI:3720535|PMID:17626057) RGD PMID:17626057 MGI:3720535 NCBI chr10:84,152,152...84,154,360
Ensembl chr10:84,152,152...84,154,360
JBrowse link
G Hoxb6 homeo box B6 ISO MGI:2151485|MGI:96178|MGI:96197 (MGI:3720535|PMID:17626057), (MGI:70296|PMID:7828847) RGD PMID:7828847 PMID:17626057 MGI:3720535 MGI:70296 NCBI chr10:84,147,331...84,150,238
Ensembl chr10:84,147,836...84,149,600
JBrowse link
G Hoxb9 homeo box B9 ISO MGI:2150429|MGI:96180|MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96199|MGI:96210 (MGI:1859107|PMID:10885747), (MGI:3720535|PMID:17626057), (MGI:85243|PMID:9013929) RGD PMID:9013929 PMID:10885747 PMID:17626057 MGI:1859107 MGI:3720535 MGI:85243 NCBI chr10:84,119,772...84,124,963
Ensembl chr10:84,119,884...84,123,390
JBrowse link
G Hoxc5 homeo box C5 ISO MGI:96177|MGI:96186 (MGI:3720535|PMID:17626057) RGD PMID:17626057 MGI:3720535 NCBI chr 7:144,628,120...144,631,542
Ensembl chr 7:144,628,120...144,631,542
JBrowse link
G Hoxc6 homeo box C6 ISO MGI:96178|MGI:96187 (MGI:3720535|PMID:17626057) RGD PMID:17626057 MGI:3720535 NCBI chr 7:144,612,230...144,626,036
Ensembl chr 7:144,623,555...144,625,516
JBrowse link
G Hoxc9 homeobox C9 ISO MGI:96180|MGI:96190|MGI:96210 (MGI:3720535|PMID:17626057) RGD PMID:17626057 MGI:3720535 NCBI chr 7:144,592,462...144,598,807
Ensembl chr 7:144,595,960...144,598,632
JBrowse link
G Hoxd1 homeo box D1 ISO MGI:3616015 (MGI:2137767|PMID:11511348) RGD PMID:11511348 MGI:2137767 NCBI chr 3:61,685,619...61,687,758
Ensembl chr 3:61,685,619...61,687,758
JBrowse link
G Hoxd9 homeo box D9 ISO MGI:2150414|MGI:96180|MGI:96190|MGI:96199 (MGI:3720535|PMID:17626057), (MGI:78984|PMID:8625797) RGD PMID:8625797 PMID:17626057 MGI:3720535 MGI:78984 NCBI chr 3:61,620,192...61,622,360
Ensembl chr 3:61,620,192...61,622,359
JBrowse link
G Hsd17b7 hydroxysteroid (17-beta) dehydrogenase 7 ISO MGI:5056371 (MGI:5050793|PMID:21515572) RGD PMID:21515572 MGI:5050793 NCBI chr13:88,288,116...88,308,019
Ensembl chr13:88,288,046...88,307,988
JBrowse link
G Mbtd1 mbt domain containing 1 ISO MGI:4940055 (MGI:4939865|PMID:21252303) RGD PMID:21252303 MGI:4939865 NCBI chr10:81,588,233...81,645,532
Ensembl chr10:81,592,114...81,642,663
JBrowse link
G Mks1 MKS transition zone complex subunit 1 involved_in IEA
ISO
GO_REF:0000107
MGI:4887578 (MGI:4868517|PMID:21045211)
Ensembl
RGD
PMID:21045211 GO_REF:0000107 MGI:4868517 NCBI chr10:75,149,814...75,160,481
Ensembl chr10:75,149,814...75,160,480
JBrowse link
G Nkx3-2 NK3 homeobox 2 ISO MGI:1857926|MGI:1931319 (MGI:1343724|PMID:10449756), (MGI:1347483|PMID:10572046) RGD PMID:10449756 PMID:10572046 MGI:1343724 MGI:1347483 NCBI chr14:73,813,531...73,818,489
Ensembl chr14:73,813,528...73,815,757
JBrowse link
G Nog noggin involved_in ISO (PMID:10080184) RGD PMID:10080184 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link
G Pax7 paired box 7 ISO MGI:1857831 (MGI:79520|PMID:8631261) RGD PMID:8631261 MGI:79520 NCBI chr 5:158,211,001...158,313,510
Ensembl chr 5:158,214,616...158,313,426
JBrowse link
G Pbx1 PBX homeobox 1 ISO MGI:2155612 (MGI:2151355|PMID:11566859) RGD PMID:11566859 MGI:2151355 NCBI chr13:86,390,741...86,671,460
Ensembl chr13:86,390,741...86,451,002
JBrowse link
G Pcgf2 polycomb group ring finger 2 ISO MGI:88174 (MGI:1932296|PMID:11290297) RGD PMID:11290297 MGI:1932296 NCBI chr10:85,631,829...85,642,591
Ensembl chr10:85,632,819...85,636,902
JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 involved_in ISO (PMID:18519639)
(MGI:3795695|PMID:18519639)
RGD PMID:18519639 MGI:3795695 NCBI chr 1:236,031,988...236,313,858
Ensembl chr 1:236,031,988...236,313,858
JBrowse link
G Rbp4 retinol binding protein 4 ISO (MGI:3604178|PMID:15994349) RGD PMID:15994349 MGI:3604178 NCBI chr 1:256,806,476...256,813,678
Ensembl chr 1:256,806,472...256,813,711
JBrowse link
G Scx scleraxis bHLH transcription factor ISO (PMID:7743923) RGD PMID:7743923 NCBI chr 7:117,519,075...117,521,093
Ensembl chr 7:117,519,075...117,521,093
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in IEA
ISO
GO_REF:0000107
MGI:95655 (MGI:3710451|PMID:17504941)
Ensembl
RGD
PMID:17504941 GO_REF:0000107 MGI:3710451 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Slc35d1 solute carrier family 35 member D1 ISO MGI:3774133 (MGI:3771453|PMID:17952091) RGD PMID:17952091 MGI:3771453 NCBI chr 5:122,700,396...122,746,815
Ensembl chr 5:122,699,587...122,746,839
JBrowse link
G Sp1 Sp1 transcription factor ISO MGI:1277166 (MGI:3717030|PMID:17584888) RGD PMID:17584888 MGI:3717030 NCBI chr 7:144,014,173...144,044,635
Ensembl chr 7:144,014,173...144,044,629
JBrowse link
G Sp3 Sp3 transcription factor ISO MGI:98372 (MGI:3717030|PMID:17584888) RGD PMID:17584888 MGI:3717030 NCBI chr 3:59,644,579...59,689,011
Ensembl chr 3:59,646,015...59,688,692
JBrowse link
G Sulf1 sulfatase 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000104
UniProtKB:Q8CFG0 (MGI:3771123|PMID:18213582)
UniProt
RGD
PMID:18213582 GO_REF:0000024 GO_REF:0000104 MGI:3771123 NCBI chr 5:5,999,520...6,186,901
Ensembl chr 5:5,999,475...6,186,329
JBrowse link
G Sulf2 sulfatase 2 ISO UniProtKB:Q8CFG0 (MGI:3771123|PMID:18213582) RGD PMID:18213582 MGI:3771123 NCBI chr 3:162,791,349...162,872,984
Ensembl chr 3:162,791,355...162,872,831
JBrowse link
G Tapt1 transmembrane anterior posterior transformation 1 ISO MGI:1857317 (MGI:3758514|PMID:17151244) RGD PMID:17151244 MGI:3758514 NCBI chr14:71,416,153...71,462,646
Ensembl chr14:71,424,083...71,462,618
JBrowse link
G Tbxt T-box transcription factor T ISO MGI:1857760 (MGI:64493|PMID:8293872) RGD PMID:8293872 MGI:64493 NCBI chr 1:52,887,067...52,900,691
Ensembl chr 1:52,887,067...52,894,832
JBrowse link
G Ucma upper zone of growth plate and cartilage matrix associated involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr17:77,252,099...77,262,301
Ensembl chr17:77,252,100...77,261,731
JBrowse link
G Wnt11 Wnt family member 11 involved_in ISO (PMID:9757009) RGD PMID:9757009 NCBI chr 1:163,794,136...163,813,756
Ensembl chr 1:163,797,660...163,813,756
JBrowse link
G Wnt5a Wnt family member 5A involved_in ISO
IEA
(PMID:19918918)
GO_REF:0000107
RGD
Ensembl
PMID:19918918 GO_REF:0000107 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
G Xylt1 xylosyltransferase 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5544658|PMID:24161523)
UniProt
RGD
PMID:24161523 GO_REF:0000024 MGI:5544658 NCBI chr 1:186,939,698...187,264,758
Ensembl chr 1:187,149,453...187,261,632
JBrowse link
embryonic skeletal system morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alx1 ALX homeobox 1 involved_in ISO
IBA
MGI:108359 (MGI:1314705|PMID:9847249), (MGI:3604843|PMID:15728667)
PMID:21873635
RGD PMID:9847249 PMID:15728667, PMID:21873635, PMID:21873635 MGI:1314705 MGI:3604843, RGD:13792537, RGD:13792537 NCBI chr 7:44,751,865...44,771,458
Ensembl chr 7:44,751,873...44,771,458
JBrowse link
G Alx3 ALX homeobox 3 ISO MGI:108359 (MGI:2151109|PMID:11641221), (MGI:3604843|PMID:15728667) RGD PMID:11641221 PMID:15728667 MGI:2151109 MGI:3604843 NCBI chr 2:210,376,510...210,386,928
Ensembl chr 2:210,381,829...210,386,928
JBrowse link
G Alx4 ALX homeobox 4 ISO MGI:104621|MGI:1277097|MGI:1856069 (MGI:1314705|PMID:9847249), (MGI:2151109|PMID:11641221), (MGI:3604843|PMID:15728667) RGD PMID:9847249 PMID:11641221 PMID:15728667 MGI:1314705 MGI:2151109 MGI:3604843 NCBI chr 3:82,548,959...82,585,531
Ensembl chr 3:82,548,959...82,585,531
JBrowse link
G Asxl2 ASXL transcriptional regulator 2 ISO MGI:3840841 (MGI:3840399|PMID:19270745) RGD PMID:19270745 MGI:3840399 NCBI chr 6:27,835,346...27,919,285
Ensembl chr 6:27,887,797...27,915,563
JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger ISO MGI:99161 (MGI:1932296|PMID:11290297) RGD PMID:11290297 MGI:1932296 NCBI chr17:85,360,439...85,370,283
Ensembl chr17:85,364,483...85,368,208
JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO MGI:2158495 (MGI:3640733|PMID:16712836) RGD PMID:16712836 MGI:3640733 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Chst11 carbohydrate sulfotransferase 11 ISO MGI:3768254 (MGI:3767479|PMID:16079159) RGD PMID:16079159 MGI:3767479 NCBI chr 7:26,641,856...26,890,503
Ensembl chr 7:26,645,422...26,859,716
JBrowse link
G Col11a1 collagen type XI alpha 1 chain ISO MGI:1856399 (MGI:53676|PMID:4100752) RGD PMID:4100752 MGI:53676 NCBI chr 2:216,863,423...217,056,523
Ensembl chr 2:216,863,428...217,056,523
JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 involved_in IEA
ISO
GO_REF:0000107
MGI:2680670 (MGI:1930428|PMID:11238884)
Ensembl
RGD
PMID:11238884 GO_REF:0000107 MGI:1930428 NCBI chr11:72,164,566...72,378,895
Ensembl chr11:72,163,749...72,378,895
JBrowse link
G Dscaml1 DS cell adhesion molecule-like 1 involved_in ISO (PMID:12051741) RGD PMID:12051741 NCBI chr 8:49,733,835...50,056,115
Ensembl chr 8:49,737,798...50,055,560
JBrowse link
G Dync2i1 dynein 2 intermediate chain 1 involved_in ISO (PMID:23910462) RGD PMID:23910462 NCBI chr 6:144,069,077...144,124,975
Ensembl chr 6:144,069,022...144,123,729
JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 ISO MGI:2150426 (MGI:1344210|PMID:10471511) RGD PMID:10471511 MGI:1344210 NCBI chr 5:4,275,728...4,495,525
Ensembl chr 5:4,373,626...4,513,142
JBrowse link
G Flvcr1 FLVCR heme transporter 1 ISO MGI:5474636 (MGI:5471193|PMID:23187127) RGD PMID:23187127 MGI:5471193 NCBI chr13:109,624,167...109,629,609
Ensembl chr13:109,578,074...109,629,482
JBrowse link
G Foxc2 forkhead box C2 ISO MGI:1857740 (MGI:1339313|PMID:9409679) RGD PMID:9409679 MGI:1339313 NCBI chr19:53,044,379...53,047,081
Ensembl chr19:53,044,379...53,047,081
JBrowse link
G Fuz fuzzy planar cell polarity protein involved_in ISS
ISO
GO_REF:0000024
(MGI:4438317|PMID:19767740), (MGI:5296432|PMID:21935430), (MGI:5498583|PMID:23806618)
UniProt
RGD
PMID:19767740 PMID:21935430 PMID:23806618