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ONTOLOGY REPORT - ANNOTATIONS

Term:skeletal system development
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Accession:GO:0001501 term browser browse the term
Definition:The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton).
Synonyms:exact_synonym: skeletal development


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skeletal system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07021591.1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 Ensembl chr13:74,582,858...74,583,313 JBrowse link
G Acan aggrecan involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:132,981,582...133,044,416
Ensembl chr 1:132,981,582...133,043,627 		JBrowse link
G Acd ACD, shelterin complex subunit and telomerase recruitment factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:1856658 (MGI:3526782|PMID:15537664)
GO_REF:0000107		 RGD
Ensembl		 PMID:15537664 GO_REF:0000107 MGI:3526782 NCBI chr19:33,586,739...33,589,481
Ensembl chr19:33,586,745...33,589,461 		JBrowse link
G Acp2 acid phosphatase 2, lysosomal acts_upstream_of_or_within ISO MGI:2180084 (MGI:894905|PMID:9228031) RGD PMID:9228031 MGI:894905 NCBI chr 3:77,175,022...77,185,180
Ensembl chr 3:77,175,895...77,185,680 		JBrowse link
G Acvr2b activin A receptor type 2B acts_upstream_of_or_within ISO MGI:1857709|MGI:98728 (MGI:3695190|PMID:16845371) RGD PMID:16845371 MGI:3695190 NCBI chr 8:119,138,901...119,178,477
Ensembl chr 8:119,138,812...119,170,458 		JBrowse link
G Alx1 ALX homeobox 1 TAS RGD PMID:12929931 RGD:1358475 NCBI chr 7:38,157,626...38,177,220
Ensembl chr 7:38,147,117...38,177,220 		JBrowse link
G Ash1l ASH1 like histone lysine methyltransferase acts_upstream_of_or_within ISO MGI:3852878 (MGI:5700615|PMID:26333994) RGD PMID:26333994 MGI:5700615 NCBI chr 2:174,346,267...174,483,057
Ensembl chr 2:174,346,150...174,483,055 		JBrowse link
G Bcan brevican involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:173,454,479...173,467,717
Ensembl chr 2:173,454,482...173,467,460 		JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within ISO MGI:1857632 (MGI:65743|PMID:7926765) RGD PMID:7926765 MGI:65743 NCBI chr17:81,332,175...81,341,625
Ensembl chr17:81,332,214...81,388,690 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO MGI:2654594|MGI:3041440 (MGI:2683812|PMID:14654219), (MGI:3583479|PMID:15936012) RGD PMID:14654219 PMID:15936012 MGI:2683812 MGI:3583479 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmp5 bone morphogenetic protein 5 acts_upstream_of_or_within ISO MGI:1857400|MGI:1858106|MGI:2153906|MGI:2153907 (MGI:51561|PMID:1339316) RGD PMID:1339316 MGI:51561 NCBI chr 8:76,517,164...76,639,925
Ensembl chr 8:76,517,164...76,639,925 		JBrowse link
G Bpnt2 3'(2'), 5'-bisphosphate nucleotidase 2 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:3810994 (MGI:3809386|PMID:18695242)		 RGD PMID:18695242 PMID:21873635 MGI:3809386, RGD:13792537 NCBI chr 5:17,775,684...17,802,570
Ensembl chr 5:17,772,608...17,802,570 		JBrowse link
G Cacna1s calcium voltage-gated channel subunit alpha1 S acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:1856326 (MGI:56124|PMID:6501560)
GO_REF:0000107		 RGD
Ensembl		 PMID:6501560 GO_REF:0000107 MGI:56124 NCBI chr13:47,493,949...47,564,194
Ensembl chr13:47,493,949...47,564,318 		JBrowse link
G Cdkn1c cyclin-dependent kinase inhibitor 1C acts_upstream_of_or_within ISO MGI:1933758|MGI:3840687 (MGI:3839493|PMID:19276117) RGD PMID:19276117 MGI:3839493 NCBI chr 1:198,655,394...198,658,097
Ensembl chr 1:198,655,407...198,658,048 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 involved_in ISO (PMID:16155193) RGD PMID:16155193 NCBI chr 5:21,812,007...21,995,358
Ensembl chr 5:21,812,070...21,995,358 		JBrowse link
G Chrd chordin acts_upstream_of_or_within ISO MGI:2157350 (MGI:2156257|PMID:11784076) RGD PMID:11784076 MGI:2156257 NCBI chr11:80,171,994...80,181,166
Ensembl chr11:80,171,994...80,180,673 		JBrowse link
G Clec3b C-type lectin domain family 3, member B acts_upstream_of_or_within ISO MGI:2178555 (MGI:2153334|PMID:11604516) RGD PMID:11604516 MGI:2153334 NCBI chr 8:122,810,120...122,815,837
Ensembl chr 8:122,810,149...122,815,835 		JBrowse link
G Col11a2 collagen type XI alpha 2 chain involved_in ISO (PMID:10677296) RGD PMID:10677296 NCBI chr20:4,786,932...4,816,598
Ensembl chr20:4,786,929...4,815,985 		JBrowse link
G Col13a1 collagen type XIII alpha 1 chain involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:29,783,965...29,924,116
Ensembl chr20:29,783,965...29,924,032 		JBrowse link
G Col18a1 collagen type XVIII alpha 1 chain involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:11,474,104...11,582,593
Ensembl chr20:11,474,104...11,582,593 		JBrowse link
G Col1a1 collagen type I alpha 1 chain acts_upstream_of_or_within
involved_in		 ISO
IBA		 (MGI:65612|PMID:8163675)
PMID:21873635
(PMID:8097422)
(PMID:14976317), (PMID:1874719)		 RGD PMID:1874719 PMID:8097422 PMID:8163675 PMID:14976317 PMID:21873635 MGI:65612, RGD:13792537 NCBI chr10:79,883,622...79,900,625
Ensembl chr10:79,883,622...79,900,624 		JBrowse link
G Col1a2 collagen type I alpha 2 chain involved_in ISO
IEA		 (PMID:17955022), (PMID:18375391), (PMID:8841196)
GO_REF:0000107		 RGD
Ensembl		 PMID:8841196 PMID:17955022 PMID:18375391 GO_REF:0000107 NCBI chr 4:32,563,938...32,598,868
Ensembl chr 4:32,563,381...32,598,867 		JBrowse link
G Col27a1 collagen type XXVII alpha 1 chain involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:76,647,302...76,765,989
Ensembl chr 5:76,647,429...76,765,174 		JBrowse link
G Col2a1 collagen type II alpha 1 chain involved_in ISO
IBA		 (PMID:1429602)
PMID:21873635		 RGD PMID:1429602 PMID:21873635 RGD:13792537 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
G Col3a1 collagen type III alpha 1 chain IEP RGD PMID:10373016 RGD:704391 NCBI chr 9:47,374,611...47,410,547
Ensembl chr 9:47,374,593...47,410,547 		JBrowse link
G Col5a2 collagen type V alpha 2 chain acts_upstream_of_or_within ISO MGI:2152946 (MGI:70182|PMID:7704020) RGD PMID:7704020 MGI:70182 NCBI chr 9:47,448,741...47,598,134
Ensembl chr 9:47,448,736...47,598,154 		JBrowse link
G Col9a1 collagen type IX alpha 1 chain acts_upstream_of_or_within ISO MGI:88469 (MGI:3807836|PMID:18191556) RGD PMID:18191556 MGI:3807836 NCBI chr 9:26,585,034...26,668,222
Ensembl chr 9:26,585,034...26,668,213 		JBrowse link
G Comp cartilage oligomeric matrix protein acts_upstream_of_or_within ISO MGI:88465 (MGI:3807836|PMID:18191556) RGD PMID:18191556 MGI:3807836 NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,047,207...19,055,845 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO MGI:2148591|MGI:2148594|MGI:2450929 (MGI:3578464|PMID:15866163) RGD PMID:15866163 MGI:3578464 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Dll3 delta like canonical Notch ligand 3 involved_in IEA
ISO
ISS		 GO_REF:0000107
(MGI:2178102|PMID:11923214)
(PMID:10742114)		 Ensembl
RGD		 PMID:10742114 PMID:11923214 PMID:11923214 GO_REF:0000107 MGI:2178102, RGD:8554121 NCBI chr 1:83,562,011...83,570,008
Ensembl chr 1:83,562,014...83,569,750 		JBrowse link
G Edn1 endothelin 1 acts_upstream_of_or_within ISO MGI:1857637 (MGI:65725|PMID:8152482) RGD PMID:8152482 MGI:65725 NCBI chr17:22,454,924...22,460,812
Ensembl chr17:22,454,420...22,460,885 		JBrowse link
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 acts_upstream_of_or_within ISO MGI:2183829 (MGI:2179907|PMID:11997520) RGD PMID:11997520 MGI:2179907 NCBI chr 4:102,805,495...102,866,914
Ensembl chr 4:102,805,510...102,866,911 		JBrowse link
G Epha2 Eph receptor A2 acts_upstream_of_or_within ISO MGI:2448472 (MGI:1934524|PMID:11287184) RGD PMID:11287184 MGI:1934524 NCBI chr 5:153,605,644...153,634,115
Ensembl chr 5:153,605,644...153,634,117 		JBrowse link
G Errfi1 ERBB receptor feedback inhibitor 1 acts_upstream_of_or_within ISO (MGI:3768698|PMID:17987665) RGD PMID:17987665 MGI:3768698 NCBI chr 5:161,323,981...161,337,289
Ensembl chr 5:161,323,998...161,337,282 		JBrowse link
G Fam20c FAM20C, golgi associated secretory pathway kinase acts_upstream_of_or_within ISO MGI:2656539|MGI:5428020|MGI:5432377 (MGI:5427766|PMID:22615579), (MGI:5432245|PMID:22732358) RGD PMID:22615579 PMID:22732358 MGI:5427766 MGI:5432245 NCBI chr12:15,826,864...15,885,423
Ensembl chr12:15,826,871...15,884,543 		JBrowse link
G Fbn1 fibrillin 1 involved_in ISO (PMID:8188302) RGD PMID:8188302 NCBI chr 3:112,554,257...112,750,835
Ensembl chr 3:112,554,925...112,750,889 		JBrowse link
G Fgfrl1 fibroblast growth factor receptor-like 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:3849002 (MGI:3848851|PMID:19383940)
GO_REF:0000107		 RGD
Ensembl		 PMID:19383940 GO_REF:0000107 MGI:3848851 NCBI chr14:1,009,863...1,022,620
Ensembl chr14:1,009,786...1,021,928 		JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within ISO MGI:1856705|MGI:1857869 (MGI:1261705|PMID:9635428), (MGI:1335260|PMID:10072431), (MGI:53669|PMID:5500588), (MGI:53904|PMID:4784576) RGD PMID:4784576 PMID:5500588 PMID:9635428 PMID:10072431 MGI:1261705 MGI:1335260 MGI:53669 MGI:53904 MGI:63127 NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1857740|MGI:97485 (MGI:1338665|PMID:10364424) RGD PMID:10364424 MGI:1338665 NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737 		JBrowse link
G Fst follistatin acts_upstream_of_or_within ISO MGI:2670967 (MGI:5511086|PMID:24019467) RGD PMID:24019467 MGI:5511086 NCBI chr 2:46,123,260...46,130,584
Ensembl chr 2:46,123,439...46,130,571 		JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within ISO MGI:2669209|MGI:2670967 (MGI:5511086|PMID:24019467) RGD PMID:24019467 MGI:5511086 NCBI chr 7:1,311,732...1,325,211
Ensembl chr 7:1,311,732...1,320,725 		JBrowse link
G Gdf3 growth differentiation factor 3 involved_in ISO (PMID:19864492) RGD PMID:19864492 NCBI chr 4:155,831,572...155,835,953
Ensembl chr 4:155,830,909...155,835,937 		JBrowse link
G Gja5 gap junction protein, alpha 5 acts_upstream_of_or_within ISO MGI:2445466 (MGI:3581374|PMID:15923624) RGD PMID:15923624 MGI:3581374 NCBI chr 2:184,602,407...184,621,952
Ensembl chr 2:184,564,475...184,621,952 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:1857509 (MGI:85752|PMID:9006072) RGD PMID:9006072 MGI:85752 NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gna11 G protein subunit alpha 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2151589 (MGI:1276765|PMID:9687499)		 Ensembl
RGD		 PMID:9687499 GO_REF:0000107 MGI:1276765 NCBI chr 7:8,163,520...8,177,863
Ensembl chr 7:8,162,750...8,179,812 		JBrowse link
G Gnaq G protein subunit alpha q involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2151661 (MGI:1276765|PMID:9687499)		 Ensembl
RGD		 PMID:9687499 GO_REF:0000107 MGI:1276765 NCBI chr 1:213,425,631...213,671,947
Ensembl chr 1:213,424,465...213,667,672 		JBrowse link
G Gnas GNAS complex locus acts_upstream_of_or_within ISO MGI:3043361 (MGI:3619837|PMID:15797856) RGD PMID:15797856 MGI:3619837 NCBI chr 3:163,071,003...163,136,350
Ensembl chr 3:163,071,417...163,127,262
Ensembl chr 3:163,071,417...163,127,262 		JBrowse link
G Hapln1 hyaluronan and proteoglycan link protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:20,631,640...20,696,388
Ensembl chr 2:20,631,640...20,693,777 		JBrowse link
G Hapln2 hyaluronan and proteoglycan link protein 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:173,488,909...173,496,824
Ensembl chr 2:173,491,160...173,496,588 		JBrowse link
G Hapln3 hyaluronan and proteoglycan link protein 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:133,046,465...133,064,665
Ensembl chr 1:133,046,467...133,080,177 		JBrowse link
G Hapln4 hyaluronan and proteoglycan link protein 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:19,333,106...19,341,243
Ensembl chr16:19,333,106...19,341,243 		JBrowse link
G Hdac4 histone deacetylase 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:3525071 (MGI:3513625|PMID:15537544)
GO_REF:0000107		 RGD
Ensembl		 PMID:15537544 GO_REF:0000107 MGI:3513625 NCBI chr 9:92,503,467...92,750,164
Ensembl chr 9:92,507,611...92,750,164 		JBrowse link
G Hes7 hes family bHLH transcription factor 7 acts_upstream_of_or_within ISO MGI:2652222 (MGI:2152470|PMID:11641270) RGD PMID:11641270 MGI:2152470 NCBI chr10:53,824,124...53,828,934
Ensembl chr10:53,825,574...53,828,097 		JBrowse link
G Hexa hexosaminidase subunit alpha acts_upstream_of_or_within ISO MGI:96074 (MGI:83770|PMID:8896570), (MGI:894634|PMID:9184660) RGD PMID:8896570 PMID:9184660 MGI:83770 MGI:894634 NCBI chr 8:59,936,526...59,961,654
Ensembl chr 8:59,936,660...59,962,013 		JBrowse link
G Hexb hexosaminidase subunit beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:96073 (MGI:83770|PMID:8896570), (MGI:894634|PMID:9184660)		 Ensembl
RGD		 PMID:8896570 PMID:9184660 GO_REF:0000107 MGI:83770 MGI:894634 NCBI chr 2:28,483,997...28,504,165
Ensembl chr 2:28,484,012...28,504,223 		JBrowse link
G Hoxa10 homeobox A10 acts_upstream_of_or_within ISO MGI:96192|MGI:96202 (MGI:2667742|PMID:12869760) RGD PMID:12869760 MGI:2667742 NCBI chr 4:81,331,591...81,340,878
Ensembl chr 4:81,331,591...81,340,919 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO MGI:1934269|MGI:96193|MGI:96203 (MGI:2667742|PMID:12869760), (MGI:73938|PMID:7596412) RGD PMID:7596412 PMID:12869760 MGI:2667742 MGI:73938 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxa5 homeo box A5 acts_upstream_of_or_within ISO MGI:2150397 (MGI:2177895|PMID:11900462) RGD PMID:11900462 MGI:2177895 NCBI chr 4:81,302,341...81,306,234
Ensembl chr 4:81,302,353...81,306,234 		JBrowse link
G Hoxc10 homeo box C10 acts_upstream_of_or_within ISO MGI:96171|MGI:96202 (MGI:2667742|PMID:12869760) RGD PMID:12869760 MGI:2667742 NCBI chr 7:134,103,741...134,108,966
Ensembl chr 7:134,103,643...134,108,966 		JBrowse link
G Hoxc11 homeobox C11 acts_upstream_of_or_within ISO MGI:96172|MGI:96203 (MGI:2667742|PMID:12869760) RGD PMID:12869760 MGI:2667742 NCBI chr 7:134,091,224...134,094,738
Ensembl chr 7:134,091,552...134,094,738 		JBrowse link
G Hoxc4 homeo box C4 acts_upstream_of_or_within ISO MGI:1857570|MGI:2150683 (MGI:79121|PMID:8626021), (MGI:81673|PMID:8660891) RGD PMID:8626021 PMID:8660891 MGI:79121 MGI:81673 NCBI chr 7:134,135,279...134,173,133
Ensembl chr 7:134,170,591...134,173,133 		JBrowse link
G Hoxd10 homeo box D10 acts_upstream_of_or_within ISO MGI:1934269|MGI:96171|MGI:96192 (MGI:1101279|PMID:9409668), (MGI:2667742|PMID:12869760) RGD PMID:9409668 PMID:12869760 MGI:1101279 MGI:2667742 NCBI chr 3:59,594,516...59,597,725
Ensembl chr 3:59,594,516...59,597,725 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:1857963|MGI:96172|MGI:96193 (MGI:2667742|PMID:12869760), (MGI:67779|PMID:7925020) RGD PMID:7925020 PMID:12869760 MGI:2667742 MGI:67779 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Hoxd12 homeo box D12 acts_upstream_of_or_within ISO MGI:1857964 (MGI:80097|PMID:8620844) RGD PMID:8620844 MGI:80097 NCBI chr 3:59,577,677...59,578,798
Ensembl chr 3:59,577,677...59,578,798 		JBrowse link
G Hoxd13 homeo box D13 acts_upstream_of_or_within ISO MGI:1857871|MGI:2151805 (MGI:63627|PMID:8106170), (MGI:80097|PMID:8620844) RGD PMID:8106170 PMID:8620844 MGI:63627 MGI:80097 NCBI chr 3:59,570,647...59,573,963
Ensembl chr 3:59,570,646...59,573,963 		JBrowse link
G Ift25 intraflagellar transport 25 acts_upstream_of_or_within ISO MGI:4432759|MGI:5426875 (MGI:5426280|PMID:22595669) RGD PMID:22595669 MGI:5426280 NCBI chr 5:122,035,588...122,062,421
Ensembl chr 5:122,035,581...122,062,421 		JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO MGI:3689350|MGI:5818514 (MGI:5807019|PMID:26996322) RGD PMID:26996322 MGI:5807019 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024 		JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 ISO (PMID:21537345)
MGI:2176264|MGI:3609381 (MGI:3608181|PMID:16278811)		 RGD PMID:16278811 PMID:21537345 MGI:3608181 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Jag2 jagged canonical Notch ligand 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2657215 (MGI:3578593|PMID:15721140)		 Ensembl
RGD		 PMID:15721140 GO_REF:0000107 MGI:3578593 NCBI chr 6:131,983,059...132,005,665
Ensembl chr 6:131,983,056...132,005,818 		JBrowse link
G Lgals3 galectin 3 acts_upstream_of_or_within ISO MGI:97011 (MGI:3589495|PMID:15800063) RGD PMID:15800063 MGI:3589495 NCBI chr15:20,620,083...20,632,019
Ensembl chr15:20,607,692...20,632,025 		JBrowse link
G Ltbp3 latent transforming growth factor beta binding protein 3 acts_upstream_of_or_within ISO MGI:2180017 (MGI:2389565|PMID:12379497) RGD PMID:12379497 MGI:2389565 NCBI chr 1:203,029,412...203,045,975
Ensembl chr 1:203,029,877...203,045,975 		JBrowse link
G Mir140 microRNA 140 acts_upstream_of_or_within ISO MGI:4461000 (MGI:4454342|PMID:20466812) RGD PMID:20466812 MGI:4454342 NCBI chr19:35,465,577...35,465,675
Ensembl chr19:35,465,577...35,465,675 		JBrowse link
G Mmp14 matrix metallopeptidase 14 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:27,887,795...27,897,020
Ensembl chr15:27,887,727...27,899,864 		JBrowse link
G Mmp16 matrix metallopeptidase 16 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:31,312,280...31,556,276
Ensembl chr 5:31,312,280...31,548,388 		JBrowse link
G Mmp9 matrix metallopeptidase 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1932294|MGI:96778 (MGI:3589495|PMID:15800063)		 Ensembl
RGD		 PMID:15800063 GO_REF:0000107 MGI:3589495 NCBI chr 3:153,684,158...153,692,118
Ensembl chr 3:153,683,858...153,692,120 		JBrowse link
G Ncan neurocan involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:19,301,969...19,328,436
Ensembl chr16:19,301,969...19,328,436 		JBrowse link
G Nfix nuclear factor I X involved_in ISO MGI:3714028 (MGI:3713631|PMID:17353270) RGD PMID:17353270 MGI:3713631 NCBI chr19:23,355,388...23,450,360
Ensembl chr19:23,355,498...23,448,265 		JBrowse link
G Nkx3-2 NK3 homeobox 2 acts_upstream_of_or_within ISO MGI:1931319 (MGI:3505761|PMID:11523821) RGD PMID:11523821 MGI:3505761 NCBI chr14:69,183,795...69,186,182
Ensembl chr14:69,183,820...69,186,061 		JBrowse link
G Nog noggin acts_upstream_of_or_within ISO MGI:1862000 (MGI:2156257|PMID:11784076) RGD PMID:11784076 MGI:2156257 NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Npr3 natriuretic peptide receptor 3 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(MGI:1339924|PMID:10377427)		 UniProt
Ensembl
RGD		 PMID:10377427 GO_REF:0000024 GO_REF:0000107 MGI:1339924 NCBI chr 2:60,865,483...60,933,432
Ensembl chr 2:60,870,594...60,932,955 		JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within ISO MGI:1347481|MGI:1856222|MGI:1857560 (MGI:1338665|PMID:10364424), (MGI:2177895|PMID:11900462) RGD PMID:10364424 PMID:11900462 MGI:1338665 MGI:2177895 NCBI chr 3:134,792,330...134,801,637
Ensembl chr 3:134,789,182...134,801,636 		JBrowse link
G Pitx1 paired-like homeodomain 1 acts_upstream_of_or_within ISO MGI:1857659 (MGI:1333095|PMID:10101115) RGD PMID:10101115 MGI:1333095 NCBI chr17:8,794,134...8,800,292
Ensembl chr17:8,794,134...8,800,291 		JBrowse link
G Pkdcc protein kinase domain containing, cytoplasmic involved_in
acts_upstream_of_or_within		 ISO
IBA		 (PMID:30478137)
PMID:21873635
MGI:5014347 (MGI:5013998|PMID:21553379)		 RGD PMID:21553379 PMID:30478137 PMID:21873635 MGI:5013998, RGD:13792537 NCBI chr 6:11,455,686...11,465,002
Ensembl chr 6:11,455,686...11,465,556 		JBrowse link
G Ptger2 prostaglandin E receptor 2 NAS RGD PMID:9440134 RGD:737645 NCBI chr15:18,215,013...18,228,714
Ensembl chr15:18,217,285...18,228,714 		JBrowse link
G Pth1r parathyroid hormone 1 receptor acts_upstream_of_or_within ISO MGI:2154519 (MGI:2153596|PMID:11606467), (MGI:82059|PMID:8662561) RGD PMID:8662561 PMID:11606467 MGI:2153596 MGI:82059 NCBI chr 8:110,693,910...110,725,458
Ensembl chr 8:110,697,485...110,719,729 		JBrowse link
G Pthlh parathyroid hormone-like hormone acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:2154515 (MGI:2153596|PMID:11606467), (MGI:64969|PMID:8314082)
GO_REF:0000107
(PMID:9008714)		 RGD
Ensembl		 PMID:8314082 PMID:9008714 PMID:11606467 GO_REF:0000107 MGI:2153596 MGI:64969 NCBI chr 4:180,188,792...180,199,847
Ensembl chr 4:180,188,792...180,199,847 		JBrowse link
G Pum2 pumilio RNA-binding family member 2 involved_in ISO (MGI:6304097|PMID:30735131) RGD PMID:30735131 MGI:6304097 NCBI chr 6:31,462,879...31,542,976
Ensembl chr 6:31,462,872...31,542,976 		JBrowse link
G Rai1 retinoic acid induced 1 acts_upstream_of_or_within ISO MGI:3521985|MGI:3521986|MGI:3526160 (MGI:3577118|PMID:15746153), (MGI:3757915|PMID:17273973) RGD PMID:15746153 PMID:17273973 MGI:3577118 MGI:3757915 NCBI chr10:44,913,231...45,008,232
Ensembl chr10:44,947,909...45,008,232 		JBrowse link
G Rassf2 Ras association domain family member 2 acts_upstream_of_or_within ISO MGI:5314787 (MGI:5314467|PMID:22227519) RGD PMID:22227519 MGI:5314467 NCBI chr 3:119,244,288...119,280,462
Ensembl chr 3:119,245,821...119,280,431 		JBrowse link
G Recql4 RecQ like helicase 4 acts_upstream_of_or_within ISO MGI:2677314 (MGI:3623183|PMID:16600186) RGD PMID:16600186 MGI:3623183 NCBI chr 7:108,423,453...108,430,790
Ensembl chr 7:108,423,455...108,430,619 		JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 acts_upstream_of_or_within ISO MGI:2386954 (MGI:1353865|PMID:10700181) RGD PMID:10700181 MGI:1353865 NCBI chr17:11,972,830...12,148,152
Ensembl chr17:11,972,830...12,148,152 		JBrowse link
G Rpl38 ribosomal protein L38 acts_upstream_of_or_within ISO MGI:1859977|MGI:1861228|MGI:2447994 (MGI:5014009|PMID:21529712) RGD PMID:21529712 MGI:5014009 NCBI chr10:99,701,330...99,705,004
Ensembl chr10:99,701,362...99,705,004
Ensembl chr14:99,701,362...99,705,004
Ensembl chr 3:99,701,362...99,705,004
Ensembl chr 2:99,701,362...99,705,004
Ensembl chr16:99,701,362...99,705,004 		JBrowse link
G Runx1 RUNX family transcription factor 1 acts_upstream_of_or_within ISO MGI:2668479 (MGI:3528197|PMID:15389629) RGD PMID:15389629 MGI:3528197 NCBI chr11:31,839,880...32,074,427
Ensembl chr11:31,843,764...32,074,542 		JBrowse link
G Runx2 RUNX family transcription factor 2 acts_upstream_of_or_within ISO MGI:2176465|MGI:2176466 (MGI:2683810|PMID:14688224), (MGI:3628871|PMID:15050892) RGD PMID:14688224 PMID:15050892 MGI:2683810 MGI:3628871 NCBI chr 9:16,167,504...16,492,826
Ensembl chr 9:16,167,482...16,492,167 		JBrowse link
G Serp1 stress-associated endoplasmic reticulum protein 1 acts_upstream_of_or_within ISO MGI:3652355 (MGI:3619104|PMID:16415102) RGD PMID:16415102 MGI:3619104 NCBI chr 2:142,757,254...142,761,243
Ensembl chr 2:142,757,270...142,761,116 		JBrowse link
G Sh3pxd2b SH3 and PX domains 2B involved_in ISO (PMID:20137777)
(MGI:4439252|PMID:20137777)		 RGD PMID:20137777 MGI:4439252 NCBI chr10:16,918,611...17,027,499
Ensembl chr10:16,918,679...17,005,170 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO MGI:108051 (MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:3618021 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 acts_upstream_of_or_within ISO MGI:3575405 (MGI:3715574|PMID:17591962), (MGI:5584216|PMID:24585429) RGD PMID:17591962 PMID:24585429 MGI:3715574 MGI:5584216 NCBI chr19:34,162,337...34,245,786
Ensembl chr19:34,162,341...34,245,749 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISS
ISO		 GO_REF:0000024
(PMID:8640233)		 UniProt
RGD		 PMID:8640233 GO_REF:0000024 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISS
ISO		 GO_REF:0000024
(PMID:9207801)		 UniProt
RGD		 PMID:9207801 GO_REF:0000024 NCBI chr12:36,879,924...36,894,849
Ensembl chr12:36,881,445...36,893,708 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 acts_upstream_of_or_within
involved_in		 ISO MGI:2384513 (MGI:3522529|PMID:15531369)
(MGI:894212|PMID:9217007)		 RGD PMID:9217007 PMID:15531369 MGI:3522529 MGI:894212 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405 		JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 acts_upstream_of_or_within ISO MGI:87912 (MGI:3695190|PMID:16845371) RGD PMID:16845371 MGI:3695190 NCBI chr 5:61,653,773...61,710,777
Ensembl chr 5:61,653,233...61,710,777 		JBrowse link
G Tle5 TLE family member 5, transcriptional modulator acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:2180116 (MGI:2179356|PMID:11984876)
GO_REF:0000107		 RGD
Ensembl		 PMID:11984876 GO_REF:0000107 MGI:2179356 NCBI chr 7:8,143,357...8,150,295
Ensembl chr 7:8,143,357...8,150,113 		JBrowse link
G Tp63 tumor protein p63 acts_upstream_of_or_within ISO MGI:1934269 (MGI:1335635|PMID:10227294) RGD PMID:10227294 MGI:1335635 NCBI chr11:74,838,858...75,049,764
Ensembl chr11:74,838,859...75,049,398 		JBrowse link
G Trappc2 trafficking protein particle complex subunit 2 involved_in ISO (PMID:10431248) RGD PMID:10431248 NCBI chr  X:28,004,051...28,015,336
Ensembl chr  X:27,994,054...28,015,346 		JBrowse link
G Trps1 transcriptional repressor GATA binding 1 involved_in ISO (PMID:10615131) RGD PMID:10615131 NCBI chr 7:81,916,668...82,142,733
Ensembl chr 7:81,921,601...82,141,905 		JBrowse link
G Usp1 ubiquitin specific peptidase 1 acts_upstream_of_or_within ISO MGI:4363583 (MGI:5556046|PMID:21925315) RGD PMID:21925315 MGI:5556046 NCBI chr 5:113,587,564...113,598,934
Ensembl chr 5:113,587,564...113,598,932 		JBrowse link
G Vcan versican involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:20,761,718...20,860,637
Ensembl chr 2:20,761,718...20,860,637 		JBrowse link
G Vdr vitamin D receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1859929 (MGI:894991|PMID:9241280)		 Ensembl
RGD		 PMID:9241280 GO_REF:0000107 MGI:894991 NCBI chr 7:128,987,981...129,037,677
Ensembl chr 7:128,987,981...129,037,677 		JBrowse link
G Wdr5 WD repeat domain 5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2154588|PMID:11551928)
GO_REF:0000107		 RGD
Ensembl		 PMID:11551928 GO_REF:0000107 MGI:2154588 NCBI chr 3:10,836,964...10,856,682
Ensembl chr 3:10,837,025...10,856,671 		JBrowse link
G Wfikkn1 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:1338027|MGI:95586 (MGI:5511086|PMID:24019467)
GO_REF:0000107		 RGD
Ensembl		 PMID:24019467 GO_REF:0000107 MGI:5511086 NCBI chr10:14,896,442...14,898,770
Ensembl chr10:14,896,378...14,899,863 		JBrowse link
G Wfikkn2 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 acts_upstream_of_or_within ISO MGI:1338027 (MGI:5511086|PMID:24019467) RGD PMID:24019467 MGI:5511086 NCBI chr10:79,185,563...79,191,657
Ensembl chr10:79,186,647...79,191,657 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within ISO MGI:1856943|MGI:2182708 (MGI:1859075|PMID:10835630), (MGI:53518|PMID:6068186) RGD PMID:6068186 PMID:10835630 MGI:1859075 MGI:53518 MGI:61278 NCBI chr 8:48,989,376...49,177,011
Ensembl chr 8:48,994,566...49,177,011 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO MGI:3698161 (MGI:3697539|PMID:17127413) RGD PMID:17127413 MGI:3697539 NCBI chr  X:136,123,662...136,129,627
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
articular cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bgn biglycan acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:107942 (MGI:5644410|PMID:19932218)
GO_REF:0000107		 RGD
Ensembl		 PMID:19932218 GO_REF:0000107 MGI:5644410 NCBI chr  X:151,197,296...151,209,458
Ensembl chr  X:151,197,273...151,209,461 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:1857079|MGI:3785162 (MGI:5462123|PMID:22927960), (MGI:5661140|PMID:22359666), (MGI:6103493|PMID:28402956) RGD PMID:22359666 PMID:22927960 PMID:28402956 MGI:5462123 MGI:5661140 MGI:6103493 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715 		JBrowse link
G Epyc epiphycan acts_upstream_of_or_within
involved_in		 ISO
IBA		 MGI:88158 (MGI:5644410|PMID:19932218)
PMID:21873635		 RGD PMID:19932218 PMID:21873635 MGI:5644410, RGD:13792537 NCBI chr 7:32,436,620...32,474,326
Ensembl chr 7:32,436,620...32,474,135 		JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO MGI:3665440|MGI:5818514 (MGI:5817320|PMID:26098911) RGD PMID:26098911 MGI:5817320 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024 		JBrowse link
G Ogn osteoglycin involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:15,032,069...15,052,626
Ensembl chr17:15,032,069...15,052,739 		JBrowse link
G Optc opticin involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:45,353,954...45,368,254
Ensembl chr13:45,355,148...45,365,237 		JBrowse link
G Pbxip1 PBX homeobox interacting protein 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:3665440|MGI:6363078|MGI:6363079 (MGI:6277636|PMID:30659184)
GO_REF:0000107		 RGD
Ensembl		 PMID:30659184 GO_REF:0000107 MGI:6277636 NCBI chr 2:174,856,339...174,868,922
Ensembl chr 2:174,856,397...174,868,919 		JBrowse link
bone development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063281.1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Akap13 A-kinase anchoring protein 13 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5770225|PMID:25892096)		 UniProt
RGD		 PMID:25892096 GO_REF:0000024 MGI:5770225 NCBI chr 1:129,313,183...129,619,647
Ensembl chr 1:129,314,402...129,619,646 		JBrowse link
G Amer1 APC membrane recruitment protein 1 acts_upstream_of_or_within ISO MGI:2446599|MGI:5086003 (MGI:5013668|PMID:21571217) RGD PMID:21571217 MGI:5013668 NCBI chr  X:60,300,595...60,316,480
Ensembl chr  X:60,295,751...60,316,440 		JBrowse link
G Ankrd11 ankyrin repeat domain containing 11 acts_upstream_of_or_within ISO MGI:3797584 (MGI:3796348|PMID:17986521) RGD PMID:17986521 MGI:3796348 NCBI chr19:50,940,284...51,098,962
Ensembl chr19:50,940,299...51,098,962 		JBrowse link
G Asxl1 ASXL transcriptional regulator 1 acts_upstream_of_or_within ISO (MGI:5439228|PMID:22876197) RGD PMID:22876197 MGI:5439228 NCBI chr 3:141,814,012...141,881,526
Ensembl chr 3:141,813,433...141,881,538 		JBrowse link
G Bbx BBX high mobility group box domain containing acts_upstream_of_or_within ISO (MGI:5439228|PMID:22876197) RGD PMID:22876197 MGI:5439228 NCBI chr11:50,381,249...50,628,934
Ensembl chr11:50,381,247...50,623,251 		JBrowse link
G Bglap bone gamma-carboxyglutamate protein involved_in IEP
IEA
IBA		 GO_REF:0000002
PMID:21873635		 InterPro
RGD		 PMID:3488316 PMID:21873635 GO_REF:0000002, RGD:2316176, RGD:13792537 NCBI chr 2:173,838,518...173,839,495
Ensembl chr 2:173,838,518...173,839,495 		JBrowse link
G Bgn biglycan acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:107942 (MGI:5644410|PMID:19932218)
GO_REF:0000107		 RGD
Ensembl		 PMID:19932218 GO_REF:0000107 MGI:5644410 NCBI chr  X:151,197,296...151,209,458
Ensembl chr  X:151,197,273...151,209,461 		JBrowse link
G Bmp2 bone morphogenetic protein 2 involved_in ISO
IEA		 MGI:3696052 (MGI:4829746|PMID:20551513)
GO_REF:0000107		 RGD
Ensembl		 PMID:20551513 GO_REF:0000107 MGI:4829746 NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (MGI:63654|PMID:8358941) RGD PMID:8358941 MGI:63654 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmp6 bone morphogenetic protein 6 involved_in ISO (PMID:16798745) RGD PMID:16798745 NCBI chr17:26,318,121...26,469,691
Ensembl chr17:26,318,569...26,470,365 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B involved_in ISO MGI:3696052 (MGI:4829746|PMID:20551513) RGD PMID:20551513 MGI:4829746 NCBI chr 2:230,538,252...230,871,077
Ensembl chr 2:230,541,558...230,871,368 		JBrowse link
G Cadm1 cell adhesion molecule 1 acts_upstream_of_or_within ISO (MGI:5439228|PMID:22876197) RGD PMID:22876197 MGI:5439228 NCBI chr 8:47,847,836...48,178,703
Ensembl chr 8:47,847,325...48,182,833 		JBrowse link
G Ccn4 cellular communication network factor 4 involved_in IEA
ISO		 GO_REF:0000107
(MGI:5788182|PMID:25864198), (MGI:6294593|PMID:15331410)		 Ensembl
RGD		 PMID:15331410 PMID:25864198 GO_REF:0000107 MGI:5788182 MGI:6294593 NCBI chr 7:98,645,238...98,677,253
Ensembl chr 7:98,645,182...98,677,248 		JBrowse link
G Cfh complement factor H acts_upstream_of_or_within ISO (MGI:4421084|PMID:19828624) RGD PMID:19828624 MGI:4421084 NCBI chr13:51,512,376...51,613,829
Ensembl chr13:51,511,828...51,613,838 		JBrowse link
G Chad chondroadherin involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:5529270 (MGI:5525032|PMID:23755099)		 Ensembl
RGD		 PMID:23755099 GO_REF:0000107 MGI:5525032 NCBI chr10:79,512,170...79,515,941
Ensembl chr10:79,511,931...79,515,940 		JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within ISO MGI:2148858 (MGI:1933050|PMID:11254354) RGD PMID:11254354 MGI:1933050 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain acts_upstream_of_or_within ISO MGI:2153356 (MGI:5435140|PMID:22448243) RGD PMID:22448243 MGI:5435140 NCBI chr20:11,906,105...11,924,599
Ensembl chr20:11,905,957...11,924,597 		JBrowse link
G Cr2 complement C3d receptor 2 acts_upstream_of_or_within ISO (MGI:4421084|PMID:19828624) RGD PMID:19828624 MGI:4421084 NCBI chr13:106,678,579...106,716,595
Ensembl chr13:106,685,413...106,716,235 		JBrowse link
G Cyp19a1 cytochrome P450, family 19, subfamily a, polypeptide 1 IEP RGD PMID:15012600 RGD:4891061 NCBI chr 8:54,552,978...54,580,375
Ensembl chr 8:54,553,165...54,580,758 		JBrowse link
G Dbh dopamine beta-hydroxylase IEP RGD PMID:20090303 RGD:5129678 NCBI chr 3:10,488,260...10,505,245
Ensembl chr 3:10,488,260...10,505,248 		JBrowse link
G Dmd dystrophin acts_upstream_of_or_within ISO MGI:1342270 (MGI:5515277|PMID:23798567) RGD PMID:23798567 MGI:5515277 NCBI chr  X:47,272,324...49,504,219
Ensembl chr  X:47,272,331...49,504,207 		JBrowse link
G Dym dymeclin involved_in ISS
ISO		 GO_REF:0000024
(PMID:21280149)		 UniProt
RGD		 PMID:21280149 GO_REF:0000024 NCBI chr18:68,605,131...68,900,905
Ensembl chr18:68,605,185...68,900,903 		JBrowse link
G Eng endoglin IEP humerus RGD PMID:20865666 RGD:7257537 NCBI chr 3:15,934,566...15,972,618
Ensembl chr 3:15,934,518...15,973,230 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:1857079|MGI:3785162 (MGI:6282476|PMID:28798354), (MGI:6504350|PMID:32980560) RGD PMID:28798354 PMID:32980560 MGI:6282476 MGI:6504350 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715 		JBrowse link
G Epyc epiphycan acts_upstream_of_or_within
involved_in		 ISO
IBA		 MGI:5762921|MGI:88158 (MGI:5644410|PMID:19932218)
PMID:21873635		 RGD PMID:19932218 PMID:21873635 MGI:5644410, RGD:13792537 NCBI chr 7:32,436,620...32,474,326
Ensembl chr 7:32,436,620...32,474,135 		JBrowse link
G Fgf8 fibroblast growth factor 8 involved_in ISO (PMID:18596921) RGD PMID:18596921 NCBI chr 1:244,584,477...244,590,578
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:3629660 (MGI:3688953|PMID:16989802) RGD PMID:16989802 MGI:3688953 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO MGI:2135670 (MGI:4437389|PMID:20053668) RGD PMID:20053668 MGI:4437389 NCBI chr14:76,987,242...77,002,671
Ensembl chr14:76,987,993...77,003,341 		JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit acts_upstream_of_or_within ISO MGI:3757560 (MGI:5574268|PMID:24046454) RGD PMID:24046454 MGI:5574268 NCBI chr 6:24,297,898...24,319,219
Ensembl chr 6:24,300,956...24,320,034 		JBrowse link
G Gja1 gap junction protein, alpha 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:6274948|PMID:25270829)		 UniProt
RGD		 PMID:25270829 GO_REF:0000024 MGI:6274948 NCBI chr20:35,756,007...35,768,481
Ensembl chr20:35,755,991...35,768,582 		JBrowse link
G Gnas GNAS complex locus involved_in ISO (PMID:12719376) RGD PMID:12719376 NCBI chr 3:163,071,003...163,136,350
Ensembl chr 3:163,071,417...163,127,262
Ensembl chr 3:163,071,417...163,127,262 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO MGI:2135973 (MGI:72977|PMID:7789268) RGD PMID:7789268 MGI:72977 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hsd17b1 hydroxysteroid (17-beta) dehydrogenase 1 IEP RGD PMID:15012600 RGD:4891061 NCBI chr10:86,009,728...86,011,928
Ensembl chr10:86,009,728...86,011,927 		JBrowse link
G Hsd17b2 hydroxysteroid (17-beta) dehydrogenase 2 IEP RGD PMID:15012600 RGD:4891061 NCBI chr19:45,753,576...45,825,203
Ensembl chr19:45,753,574...45,825,202 		JBrowse link
G Idua alpha-L-iduronidase acts_upstream_of_or_within ISO MGI:4415188 (MGI:4414887|PMID:19751987) RGD PMID:19751987 MGI:4414887 NCBI chr14:1,031,588...1,059,494
Ensembl chr14:1,032,171...1,046,522 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:4821824 (MGI:5285455|PMID:21653639)
GO_REF:0000107		 RGD
Ensembl		 PMID:21653639 GO_REF:0000107 MGI:5285455 NCBI chr 6:25,081,933...25,121,271
Ensembl chr 6:25,081,980...25,120,860 		JBrowse link
G Igf1 insulin-like growth factor 1 IEP RGD PMID:24735836 RGD:11352746 NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296 		JBrowse link
G Itgb6 integrin subunit beta 6 acts_upstream_of_or_within ISO (MGI:6454091|PMID:30467097) RGD PMID:30467097 MGI:6454091 NCBI chr 3:45,046,295...45,170,532
Ensembl chr 3:45,048,044...45,121,671 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO MGI:94909 (MGI:5515277|PMID:23798567) RGD PMID:23798567 MGI:5515277 NCBI chr19:11,603,129...12,048,930
Ensembl chr19:11,603,129...12,048,930 		JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO (MGI:4835143|PMID:17700537) RGD PMID:17700537 MGI:4835143 NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Map2k6 mitogen-activated protein kinase kinase 6 involved_in ISO MGI:3696052 (MGI:4829746|PMID:20551513) RGD PMID:20551513 MGI:4829746 NCBI chr10:95,373,304...95,490,406
Ensembl chr10:95,373,204...95,488,293 		JBrowse link
G Map3k7 mitogen activated protein kinase kinase kinase 7 involved_in ISO MGI:3696052 (MGI:4829746|PMID:20551513) RGD PMID:20551513 MGI:4829746 NCBI chr 5:46,356,973...46,415,597
Ensembl chr 5:46,357,931...46,415,597 		JBrowse link
G Mapk11 mitogen-activated protein kinase 11 involved_in ISO MGI:3696052 (MGI:4829746|PMID:20551513) RGD PMID:20551513 MGI:4829746 NCBI chr 7:120,218,471...120,225,488
Ensembl chr 7:120,218,478...120,225,395 		JBrowse link
G Mapk14 mitogen activated protein kinase 14 involved_in IEA
ISO		 GO_REF:0000107
MGI:3696052 (MGI:4829746|PMID:20551513)		 Ensembl
RGD		 PMID:20551513 GO_REF:0000107 MGI:4829746 NCBI chr20:6,749,646...6,810,590
Ensembl chr20:6,749,670...6,810,589 		JBrowse link
G Mcph1 microcephalin 1 acts_upstream_of_or_within ISO MGI:4431685 (MGI:5502489|PMID:23516444) RGD PMID:23516444 MGI:5502489 NCBI chr16:71,021,855...71,224,067
Ensembl chr16:71,024,588...71,224,122 		JBrowse link
G Miga2 mitoguardin 2 acts_upstream_of_or_within ISO (MGI:5439228|PMID:22876197) RGD PMID:22876197 MGI:5439228 NCBI chr 3:13,636,235...13,658,895
Ensembl chr 3:13,636,238...13,658,896 		JBrowse link
G Mmp14 matrix metallopeptidase 14 acts_upstream_of_or_within ISO MGI:1276107 (MGI:3771253|PMID:18022611) RGD PMID:18022611 MGI:3771253 NCBI chr15:27,887,795...27,897,020
Ensembl chr15:27,887,727...27,899,864 		JBrowse link
G Mmp16 matrix metallopeptidase 16 acts_upstream_of_or_within ISO MGI:101900 (MGI:3771253|PMID:18022611) RGD PMID:18022611 MGI:3771253 NCBI chr 5:31,312,280...31,556,276
Ensembl chr 5:31,312,280...31,548,388 		JBrowse link
G Myoc myocilin involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:5503270|PMID:23629661)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:23629661 GO_REF:0000024 GO_REF:0000107 MGI:5503270 NCBI chr13:74,976,730...74,987,128
Ensembl chr13:74,976,730...74,987,127 		JBrowse link
G Nos3 nitric oxide synthase 3 IEP femur RGD PMID:10352094 RGD:7794707 NCBI chr 4:10,793,834...10,814,170
Ensembl chr 4:10,793,834...10,814,166 		JBrowse link
G Notum NOTUM, palmitoleoyl-protein carboxylesterase acts_upstream_of_or_within ISO
IMP		 MGI:4214308 (MGI:6303810|PMID:30622831)
(PMID:30622831)		 RGD PMID:30622831 PMID:30622831 MGI:6303810, RGD:127285401 NCBI chr10:105,933,245...105,940,327
Ensembl chr10:105,933,249...105,940,315 		JBrowse link
G Npr2 natriuretic peptide receptor 2 acts_upstream_of_or_within ISO MGI:1856702 (MGI:54411|PMID:624676) RGD PMID:624676 MGI:54411 NCBI chr 5:57,883,171...57,901,590
Ensembl chr 5:57,883,171...57,901,580 		JBrowse link
G Nsd2 nuclear receptor binding SET domain protein 2 acts_upstream_of_or_within ISO MGI:3851507 (MGI:3850584|PMID:19483677) RGD PMID:19483677 MGI:3850584 NCBI chr14:76,833,179...76,911,304
Ensembl chr14:76,835,637...76,913,641 		JBrowse link
G Ogn osteoglycin involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:15,032,069...15,052,626
Ensembl chr17:15,032,069...15,052,739 		JBrowse link
G Opa3 outer mitochondrial membrane lipid metabolism regulator OPA3 acts_upstream_of_or_within ISO MGI:5312669 (MGI:5810498|PMID:27106103) RGD PMID:27106103 MGI:5810498 NCBI chr 1:78,879,612...78,910,453
Ensembl chr 1:78,880,114...78,901,469
Ensembl chr 1:78,880,114...78,901,469 		JBrowse link
G Optc opticin involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:45,353,954...45,368,254
Ensembl chr13:45,355,148...45,365,237 		JBrowse link
G P3h1 prolyl 3-hydroxylase 1 involved_in ISO
IEA		 (PMID:17277775), (PMID:22615817)
GO_REF:0000107		 RGD
Ensembl		 PMID:17277775 PMID:22615817 GO_REF:0000107 NCBI chr 5:132,841,868...132,856,664
Ensembl chr 5:132,841,928...132,856,659 		JBrowse link
G Papss2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 acts_upstream_of_or_within ISO MGI:1856688 (MGI:54411|PMID:624676) RGD PMID:624676 MGI:54411 NCBI chr 1:230,454,314...230,539,332
Ensembl chr 1:230,454,426...230,539,331 		JBrowse link
G Pdgfa platelet derived growth factor subunit A acts_upstream_of_or_within ISO MGI:1859631 (MGI:5543868|PMID:23938297) RGD PMID:23938297 MGI:5543868 NCBI chr12:15,645,549...15,667,056
Ensembl chr12:15,645,541...15,666,497 		JBrowse link
G Pdgfc platelet derived growth factor C acts_upstream_of_or_within ISO MGI:97527 (MGI:5543868|PMID:23938297) RGD PMID:23938297 MGI:5543868 NCBI chr 2:166,316,870...166,493,449
Ensembl chr 2:166,316,803...166,493,433 		JBrowse link
G Phex phosphate regulating endopeptidase X-linked IEP RGD PMID:11064151 RGD:11556272 NCBI chr  X:37,607,553...37,856,183
Ensembl chr  X:37,610,760...37,854,469 		JBrowse link
G Pls3 plastin 3 involved_in ISO (PMID:24088043) RGD PMID:24088043 NCBI chr  X:111,589,193...111,683,908
Ensembl chr  X:111,589,254...111,683,891 		JBrowse link
G Poc1a POC1 centriolar protein A acts_upstream_of_or_within ISO MGI:2135614 (MGI:5700251|PMID:26496357) RGD PMID:26496357 MGI:5700251 NCBI chr 8:106,922,058...106,991,678
Ensembl chr 8:106,922,978...106,991,089 		JBrowse link
G Ppib peptidylprolyl isomerase B involved_in ISO (PMID:20089953) RGD PMID:20089953 NCBI chr 8:66,603,877...66,609,734
Ensembl chr 8:66,603,861...66,630,428 		JBrowse link
G Prpsap2 phosphoribosyl pyrophosphate synthetase-associated protein 2 acts_upstream_of_or_within ISO (MGI:5439228|PMID:22876197) RGD PMID:22876197 MGI:5439228 NCBI chr10:46,410,817...46,445,929
Ensembl chr10:46,410,835...46,445,849 		JBrowse link
G Ptger4 prostaglandin E receptor 4 involved_in IDA PMID:19233324 UniProt PMID:19233324 RGD:8554254 NCBI chr 2:54,330,563...54,347,451
Ensembl chr 2:54,335,424...54,346,670 		JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within ISO MGI:97858 (MGI:1096258|PMID:9376317), (MGI:69060|PMID:7607067) RGD PMID:7607067 PMID:9376317 MGI:1096258 MGI:69060 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142 		JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within ISO MGI:97858 (MGI:69060|PMID:7607067) RGD PMID:7607067 MGI:69060 NCBI chr15:8,700,533...9,051,288
Ensembl chr15:8,406,492...9,051,288 		JBrowse link
G Rarg retinoic acid receptor, gamma involved_in
acts_upstream_of_or_within		 ISO (MGI:3848572|PMID:19389355)
MGI:97856 (MGI:1096258|PMID:9376317)
MGI:97856|MGI:97857 (MGI:69060|PMID:7607067)		 RGD PMID:7607067 PMID:9376317 PMID:19389355 MGI:1096258 MGI:3848572 MGI:69060 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Rpl13 ribosomal protein L13 involved_in ISO (PMID:31630789) RGD PMID:31630789 NCBI chr19:51,153,990...51,156,541
Ensembl chr19:51,153,924...51,163,014 		JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 acts_upstream_of_or_within ISO (MGI:5439228|PMID:22876197) RGD PMID:22876197 MGI:5439228 NCBI chr 2:182,898,738...182,930,283
Ensembl chr 2:182,898,738...182,930,506 		JBrowse link
G Sh3pxd2b SH3 and PX domains 2B involved_in ISO (PMID:20137777)
(MGI:4439252|PMID:20137777)		 RGD PMID:20137777 MGI:4439252 NCBI chr10:16,918,611...17,027,499
Ensembl chr10:16,918,679...17,005,170 		JBrowse link
G Slc10a7 solute carrier family 10, member 7 involved_in ISO (PMID:30082715)
(MGI:6198941|PMID:30082715)		 RGD PMID:30082715 MGI:6198941 NCBI chr19:29,183,143...29,407,470
Ensembl chr19:29,183,155...29,407,464 		JBrowse link
G Slc38a10 solute carrier family 38, member 10 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5439228|PMID:22876197)
GO_REF:0000107		 RGD
Ensembl		 PMID:22876197 GO_REF:0000107 MGI:5439228 NCBI chr10:105,386,836...105,436,636
Ensembl chr10:105,386,836...105,436,636 		JBrowse link
G Smad1 SMAD family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1328787|MGI:1859993 (MGI:3840027|PMID:19224984)		 Ensembl
RGD		 PMID:19224984 GO_REF:0000107 MGI:3840027 NCBI chr19:28,513,130...28,573,665
Ensembl chr19:28,513,131...28,573,651 		JBrowse link
G Smad5 SMAD family member 5 acts_upstream_of_or_within ISO MGI:109452|MGI:1859993 (MGI:3840027|PMID:19224984) RGD PMID:19224984 MGI:3840027 NCBI chr17:7,862,332...7,891,678
Ensembl chr17:7,864,720...7,891,634 		JBrowse link
G Smad9 SMAD family member 9 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:109452|MGI:1328787 (MGI:3840027|PMID:19224984)
GO_REF:0000107		 RGD
Ensembl		 PMID:19224984 GO_REF:0000107 MGI:3840027 NCBI chr 2:138,956,326...139,006,315
Ensembl chr 2:138,986,471...139,006,307 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 acts_upstream_of_or_within ISO (MGI:5805317|PMID:27325675) RGD PMID:27325675 MGI:5805317 NCBI chr19:34,162,337...34,245,786
Ensembl chr19:34,162,341...34,245,749 		JBrowse link
G Sparc secreted protein acidic and cysteine rich acts_upstream_of_or_within ISO (MGI:5439228|PMID:22876197) RGD PMID:22876197 MGI:5439228 NCBI chr10:39,516,394...39,538,252
Ensembl chr10:39,516,406...39,538,396 		JBrowse link
G Spns2 SPNS lysolipid transporter 2, sphingosine-1-phosphate acts_upstream_of_or_within ISO (MGI:5439228|PMID:22876197) RGD PMID:22876197 MGI:5439228 NCBI chr10:57,067,348...57,105,969
Ensembl chr10:57,066,897...57,105,957 		JBrowse link
G Srd5a1 steroid 5 alpha-reductase 1 IEP RGD PMID:15012600 RGD:4891061 NCBI chr 1:33,686,069...33,720,468
Ensembl chr 1:33,686,391...33,720,461 		JBrowse link
G Srd5a2 steroid 5 alpha-reductase 2 IEP RGD PMID:15012600 RGD:4891061 NCBI chr 6:21,426,225...21,465,727
Ensembl chr 6:21,426,215...21,462,112 		JBrowse link
G Stc1 stanniocalcin 1 involved_in ISO (PMID:16377640) RGD PMID:16377640 NCBI chr15:44,299,591...44,311,695
Ensembl chr15:44,299,621...44,310,264 		JBrowse link
G Sulf1 sulfatase 1 involved_in IEA
ISO
ISS		 GO_REF:0000104
UniProtKB:Q8CFG0 (MGI:3769052|PMID:17593974)
GO_REF:0000024		 UniProt
RGD		 PMID:17593974 GO_REF:0000024 GO_REF:0000104 MGI:3769052 NCBI chr 5:6,362,894...6,526,174
Ensembl chr 5:6,362,911...6,525,584 		JBrowse link
G Sulf2 sulfatase 2 involved_in ISO UniProtKB:Q8K007 (MGI:3769052|PMID:17593974) RGD PMID:17593974 MGI:3769052 NCBI chr 3:154,822,079...154,904,566
Ensembl chr 3:154,822,085...154,904,415 		JBrowse link
G Tgm2 transglutaminase 2 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 3:146,772,684...146,801,924
Ensembl chr 3:146,772,687...146,801,981 		JBrowse link
G Tmem38b transmembrane protein 38B acts_upstream_of_or_within ISO MGI:1921416 (MGI:6141091|PMID:27188440) RGD PMID:27188440 MGI:6141091 NCBI chr 5:68,460,304...68,496,026
Ensembl chr 5:68,460,304...68,496,025 		JBrowse link
G Tnfsf11 TNF superfamily member 11 acts_upstream_of_or_within ISO MGI:5614816 (MGI:5646594|PMID:26234751) RGD PMID:26234751 MGI:5646594 NCBI chr15:53,673,850...53,705,325
Ensembl chr15:53,673,877...53,705,445 		JBrowse link
G Trim45 tripartite motif-containing 45 acts_upstream_of_or_within ISO (MGI:5439228|PMID:22876197) RGD PMID:22876197 MGI:5439228 NCBI chr 2:188,349,979...188,359,205
Ensembl chr 2:188,349,744...188,359,204 		JBrowse link
G Trip11 thyroid hormone receptor interactor 11 acts_upstream_of_or_within ISO MGI:3836913|MGI:4829605 (MGI:4822550|PMID:20089971) RGD PMID:20089971 MGI:4822550 NCBI chr 6:120,995,242...121,067,693
Ensembl chr 6:120,998,733...121,067,781 		JBrowse link
G Ttc9 tetratricopeptide repeat domain 9 acts_upstream_of_or_within ISO (MGI:5903425|PMID:25798063) RGD PMID:25798063 MGI:5903425 NCBI chr 6:101,333,274...101,368,110
Ensembl chr 6:101,333,141...101,368,110 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO MGI:2388066 (MGI:2136130|PMID:11406614) RGD PMID:11406614 MGI:2136130 NCBI chr 4:161,590,478...161,632,244
Ensembl chr 4:161,590,479...161,632,149 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 IEP RGD PMID:8773900 RGD:5131604 NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653 		JBrowse link
G Vkorc1 vitamin K epoxide reductase complex, subunit 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5559848|PMID:19492146)		 UniProt
RGD		 PMID:19492146 GO_REF:0000024 MGI:5559848 NCBI chr 1:182,502,491...182,505,012
Ensembl chr 1:182,500,844...182,505,008 		JBrowse link
G Wnt1 Wnt family member 1 involved_in ISO (PMID:23499309) RGD PMID:23499309 NCBI chr 7:129,938,604...129,942,651
Ensembl chr 7:129,938,604...129,942,651 		JBrowse link
bone growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Comp cartilage oligomeric matrix protein acts_upstream_of_or_within ISO MGI:3758741 (MGI:3723532|PMID:17588960) RGD PMID:17588960 MGI:3723532 NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,047,207...19,055,845 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:1857079 (MGI:3664406|PMID:9541520) RGD PMID:9541520 MGI:3664406 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (MGI:4946896|PMID:21185280) RGD PMID:21185280 MGI:4946896 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Lep leptin involved_in ISS
ISO		 GO_REF:0000024
(MGI:1352383|PMID:10660043)		 UniProt
RGD		 PMID:10660043 GO_REF:0000024 MGI:1352383 NCBI chr 4:57,661,127...57,675,262
Ensembl chr 4:57,661,131...57,675,262 		JBrowse link
G Lepr leptin receptor involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(MGI:1352383|PMID:10660043)		 UniProt
Ensembl
RGD		 PMID:10660043 GO_REF:0000024 GO_REF:0000107 MGI:1352383 NCBI chr 5:116,294,409...116,477,904
Ensembl chr 5:116,289,823...116,475,908 		JBrowse link
G Mir34a microRNA 34a acts_upstream_of_or_within_positive_effect ISO (MGI:5613071|PMID:25043055) RGD PMID:25043055 MGI:5613071 NCBI chr 5:160,533,002...160,533,103
Ensembl chr 5:160,533,002...160,533,103 		JBrowse link
G Npr2 natriuretic peptide receptor 2 involved_in ISO MGI:4358115|MGI:5567995|MGI:5911053 (MGI:5442436|PMID:23065701), (MGI:6110954|PMID:29199951), (MGI:6256620|PMID:30249793) RGD PMID:23065701 PMID:29199951 PMID:30249793 MGI:5442436 MGI:6110954 MGI:6256620 NCBI chr 5:57,883,171...57,901,590
Ensembl chr 5:57,883,171...57,901,580 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3575405 (MGI:3715996|PMID:17626887), (MGI:5584216|PMID:24585429)		 Ensembl
RGD		 PMID:17626887 PMID:24585429 GO_REF:0000107 MGI:3715996 MGI:5584216 NCBI chr19:34,162,337...34,245,786
Ensembl chr19:34,162,341...34,245,749 		JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:152,660,259...152,671,682
Ensembl chr 1:152,656,693...152,672,588 		JBrowse link
bone marrow development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asxl1 ASXL transcriptional regulator 1 acts_upstream_of_or_within ISO MGI:4418244 (MGI:4418016|PMID:19861679) RGD PMID:19861679 MGI:4418016 NCBI chr 3:141,814,012...141,881,526
Ensembl chr 3:141,813,433...141,881,538 		JBrowse link
G Ctc1 CST telomere replication complex component 1 acts_upstream_of_or_within ISO MGI:5427642 (MGI:5426340|PMID:22531781) RGD PMID:22531781 MGI:5426340 NCBI chr10:53,714,614...53,735,298
Ensembl chr10:53,714,644...53,735,298 		JBrowse link
G Hoxb4 homeo box B4 acts_upstream_of_or_within ISO MGI:3045971 (MGI:3045582|PMID:14962901) RGD PMID:14962901 MGI:3045582 NCBI chr10:81,284,552...81,287,134
Ensembl chr10:81,284,552...81,287,128 		JBrowse link
G Lipa lipase A, lysosomal acid type acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:2451080 (MGI:4455079|PMID:20348241)
GO_REF:0000107		 RGD
Ensembl		 PMID:20348241 GO_REF:0000107 MGI:4455079 NCBI chr 1:232,024,351...232,057,735
Ensembl chr 1:232,024,356...232,057,633 		JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO
IBA		 (PMID:17680723)
PMID:21873635		 RGD PMID:17680723 PMID:21873635 RGD:13792537 NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Lrrc17 leucine rich repeat containing 17 involved_in ISO (MGI:3850892|PMID:19336404) RGD PMID:19336404 MGI:3850892 NCBI chr 4:13,501,428...13,531,845
Ensembl chr 4:13,501,436...13,531,845 		JBrowse link
G Mir188 microRNA 188 acts_upstream_of_or_within ISO (MGI:5643971|PMID:25751060) RGD PMID:25751060 MGI:5643971 NCBI chr  X:15,247,715...15,247,794
Ensembl chr  X:15,247,715...15,247,794 		JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C involved_in ISO (PMID:21911094) RGD PMID:21911094 NCBI chr13:49,596,193...49,708,283
Ensembl chr13:49,596,193...49,708,692 		JBrowse link
G Sbds Sbds, ribosome maturation factor involved_in ISO (PMID:15342903) RGD PMID:15342903 NCBI chr12:26,420,410...26,429,650
Ensembl chr12:26,420,414...26,429,649 		JBrowse link
G Tp53 tumor protein p53 involved_in ISO
IEA		 (PMID:30146126)
GO_REF:0000107		 RGD
Ensembl		 PMID:30146126 GO_REF:0000107 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
bone maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr3 fibroblast growth factor receptor 3 involved_in ISO (MGI:4457789|PMID:20582225) RGD PMID:20582225 MGI:4457789 NCBI chr14:76,987,242...77,002,671
Ensembl chr14:76,987,993...77,003,341 		JBrowse link
G Gh1 growth hormone 1 involved_in ISO (PMID:20110402) RGD PMID:20110402 NCBI chr10:91,228,102...91,230,079
Ensembl chr10:91,228,103...91,230,078 		JBrowse link
G Mbtps2 membrane-bound transcription factor peptidase, site 2 involved_in ISO (PMID:27380894) RGD PMID:27380894 NCBI chr  X:37,410,914...37,461,130
Ensembl chr  X:37,410,811...37,464,430 		JBrowse link
bone mineralization involved in bone maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ano6 anoctamin 6 acts_upstream_of_or_within ISO MGI:4127698 (MGI:5486117|PMID:22936354) RGD PMID:22936354 MGI:5486117 NCBI chr 7:126,933,919...127,113,588
Ensembl chr 7:126,933,936...127,113,589 		JBrowse link
G Asxl2 ASXL transcriptional regulator 2 acts_upstream_of ISO MGI:3840841 (MGI:5514358|PMID:21490954) RGD PMID:21490954 MGI:5514358 NCBI chr 6:26,425,017...26,514,899
Ensembl chr 6:26,425,954...26,507,477 		JBrowse link
G Ccdc154 coiled-coil domain containing 154 acts_upstream_of_or_within
involved_in		 ISO
IBA		 MGI:5702426 (MGI:5697796|PMID:20121924)
PMID:21873635		 RGD PMID:20121924 PMID:21873635 MGI:5697796, RGD:13792537 NCBI chr10:14,177,271...14,187,378
Ensembl chr10:14,177,278...14,187,253 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:1857079|MGI:2385534 (MGI:5616480|PMID:25260930), (MGI:5661140|PMID:22359666) RGD PMID:22359666 PMID:25260930 MGI:5616480 MGI:5661140 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715 		JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO MGI:3689350|MGI:5818514 (MGI:5807019|PMID:26996322) RGD PMID:26996322 MGI:5807019 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024 		JBrowse link
G Igf1 insulin-like growth factor 1 involved_in ISO
IEA		 (PMID:16433617)
GO_REF:0000107		 RGD
Ensembl		 PMID:16433617 GO_REF:0000107 NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296 		JBrowse link
G Lep leptin IDA RGD PMID:21353474 RGD:5128507 NCBI chr 4:57,661,127...57,675,262
Ensembl chr 4:57,661,131...57,675,262 		JBrowse link
G Phospho1 phosphoethanolamine/phosphocholine phosphatase 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:5049904 (MGI:5008224|PMID:21272676)		 RGD PMID:21272676 PMID:21873635 MGI:5008224, RGD:13792537 NCBI chr10:80,762,062...80,769,596
Ensembl chr10:80,760,792...80,770,342 		JBrowse link
G Snx10 sorting nexin 10 acts_upstream_of_or_within ISO MGI:5690193 (MGI:5688814|PMID:25811986) RGD PMID:25811986 MGI:5688814 NCBI chr 4:80,612,648...80,677,005
Ensembl chr 4:80,612,669...80,676,996 		JBrowse link
bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acp5 acid phosphatase 5, tartrate resistant acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:2180086 (MGI:83673|PMID:8898228)
GO_REF:0000107		 RGD
Ensembl		 PMID:8898228 GO_REF:0000107 MGI:83673 NCBI chr 8:20,663,984...20,670,604
Ensembl chr 8:20,663,985...20,667,929 		JBrowse link
G Actn3 actinin alpha 3 involved_in ISO (MGI:5291888|PMID:21784188) RGD PMID:21784188 MGI:5291888 NCBI chr 1:202,159,081...202,175,012
Ensembl chr 1:202,159,082...202,175,012 		JBrowse link
G Atg9a autophagy related 9A involved_in ISO
ISS		 (MGI:5906103|PMID:27811852)
GO_REF:0000024		 RGD
UniProt		 PMID:27811852 GO_REF:0000024 MGI:5906103 NCBI chr 9:76,677,403...76,688,050
Ensembl chr 9:76,677,404...76,687,986 		JBrowse link
G Cdx1 caudal type homeo box 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2154514|MGI:97858 (MGI:2154839|PMID:11784046)		 Ensembl
RGD		 PMID:11784046 GO_REF:0000107 MGI:2154839 NCBI chr18:54,472,587...54,490,913
Ensembl chr18:54,473,444...54,490,814 		JBrowse link
G Chsy1 chondroitin sulfate synthase 1 acts_upstream_of_or_within ISO MGI:5007063 (MGI:5316547|PMID:22280990) RGD PMID:22280990 MGI:5316547 NCBI chr 1:119,689,626...119,750,711
Ensembl chr 1:119,686,350...119,750,601 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:2179740 (MGI:4457799|PMID:20549734) RGD PMID:20549734 MGI:4457799 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Col9a1 collagen type IX alpha 1 chain acts_upstream_of_or_within ISO MGI:88469 (MGI:3807836|PMID:18191556) RGD PMID:18191556 MGI:3807836 NCBI chr 9:26,585,034...26,668,222
Ensembl chr 9:26,585,034...26,668,213 		JBrowse link
G Comp cartilage oligomeric matrix protein acts_upstream_of_or_within ISO MGI:88465 (MGI:3807836|PMID:18191556) RGD PMID:18191556 MGI:3807836 NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,047,207...19,055,845 		JBrowse link
G Cst5 cystatin D involved_in ISO MGI:3629665 (MGI:3629269|PMID:16680148) RGD PMID:16680148 MGI:3629269 NCBI chr 3:137,573,194...137,577,754
Ensembl chr 3:137,573,194...137,577,754 		JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 involved_in ISO (PMID:22019272) RGD PMID:22019272 NCBI chr 4:117,041,808...117,058,628
Ensembl chr 4:117,041,808...117,058,628 		JBrowse link
G Dhrs3 dehydrogenase/reductase 3 acts_upstream_of_or_within ISO MGI:5007106 (MGI:5528782|PMID:24005908) RGD PMID:24005908 MGI:5528782 NCBI chr 5:156,747,939...156,782,420
Ensembl chr 5:156,747,962...156,782,417 		JBrowse link
G Dlx5 distal-less homeobox 5 acts_upstream_of_or_within ISO MGI:2180474 (MGI:3611627|PMID:16330189) RGD PMID:16330189 MGI:3611627 NCBI chr 4:34,999,139...35,003,504
Ensembl chr 4:34,999,139...35,003,407 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (MGI:4431165|PMID:20080592), (MGI:4834113|PMID:20404326) RGD PMID:20080592 PMID:20404326 MGI:4431165 MGI:4834113 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153799 (MGI:1346744|PMID:10518547) RGD PMID:10518547 MGI:1346744 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within
involved_in		 ISO MGI:1931521 (MGI:4352984|PMID:19407216)
(MGI:4457789|PMID:20582225)		 RGD PMID:19407216 PMID:20582225 MGI:4352984 MGI:4457789 NCBI chr14:76,987,242...77,002,671
Ensembl chr14:76,987,993...77,003,341 		JBrowse link
G Glg1 golgi glycoprotein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:4829764 (MGI:4829577|PMID:20530870)		 Ensembl
RGD		 PMID:20530870 GO_REF:0000107 MGI:4829577 NCBI chr19:39,124,892...39,224,178
Ensembl chr19:39,124,641...39,224,178 		JBrowse link
G Has2 hyaluronan synthase 2 acts_upstream_of_or_within ISO MGI:2176070|MGI:4360705 (MGI:4880794|PMID:21246657) RGD PMID:21246657 MGI:4880794 NCBI chr 7:88,113,326...88,139,337
Ensembl chr 7:88,113,326...88,128,933 		JBrowse link
G Ifitm5 interferon induced transmembrane protein 5 involved_in IBA
ISO		 PMID:21873635
(MGI:5607401|PMID:20838829)
(PMID:24519609)		 RGD PMID:20838829 PMID:24519609 PMID:21873635 MGI:5607401, RGD:13792537 NCBI chr 1:196,045,836...196,052,554
Ensembl chr 1:196,045,666...196,047,232 		JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO MGI:3856827 (MGI:4940140|PMID:21227999) RGD PMID:21227999 MGI:4940140 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024 		JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO
IBA		 (PMID:19673927), (PMID:20146170), (PMID:20630166)
PMID:21873635		 RGD PMID:19673927 PMID:20146170 PMID:20630166 PMID:21873635 RGD:13792537 NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:1861309 RGD MGI:61254 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Ltbp3 latent transforming growth factor beta binding protein 3 acts_upstream_of_or_within ISO MGI:2180017 (MGI:2178869|PMID:11790802), (MGI:4829577|PMID:20530870) RGD PMID:11790802 PMID:20530870 MGI:2178869 MGI:4829577 NCBI chr 1:203,029,412...203,045,975
Ensembl chr 1:203,029,877...203,045,975 		JBrowse link
G Ltf lactotransferrin involved_in ISO (PMID:15166119) RGD PMID:15166119 NCBI chr 8:110,999,948...111,022,795
Ensembl chr 8:110,999,948...111,022,795 		JBrowse link
G Mmp13 matrix metallopeptidase 13 involved_in ISO
ISS		 (PMID:16167086)
GO_REF:0000024		 RGD
UniProt		 PMID:16167086 GO_REF:0000024 NCBI chr 8:4,497,960...4,508,239
Ensembl chr 8:4,497,960...4,508,239 		JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO MGI:1933766|MGI:97169 (MGI:3608570|PMID:12489152), (MGI:3611627|PMID:16330189), (MGI:3723565|PMID:17693062) RGD PMID:12489152 PMID:16330189 PMID:17693062 MGI:3608570 MGI:3611627 MGI:3723565 NCBI chr14:72,961,036...72,964,970
Ensembl chr14:72,961,148...72,964,966 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within ISO MGI:97168 (MGI:3723565|PMID:17693062) RGD PMID:17693062 MGI:3723565 NCBI chr17:11,097,214...11,102,879
Ensembl chr17:11,097,103...11,102,879 		JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3818159|PMID:17547533)		 UniProt
RGD		 PMID:17547533 GO_REF:0000024 MGI:3818159 NCBI chr 7:66,487,841...66,495,003
Ensembl chr 7:66,487,839...66,495,224 		JBrowse link
G Pappa2 pappalysin 2 acts_upstream_of_or_within ISO MGI:5504500 (MGI:5502277|PMID:23457539) RGD PMID:23457539 MGI:5502277 NCBI chr13:70,873,918...71,147,874
Ensembl chr13:70,876,794...71,147,779 		JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within ISO MGI:1856223|MGI:1856225 (MGI:69019|PMID:7607069) RGD PMID:7607069 MGI:69019 NCBI chr 3:134,792,330...134,801,637
Ensembl chr 3:134,789,182...134,801,636 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO MGI:1931079|MGI:88360 (MGI:2154839|PMID:11784046), (MGI:60925|PMID:8388780) RGD PMID:8388780 PMID:11784046 MGI:2154839 MGI:60925 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Ripply1 ripply transcriptional repressor 1 acts_upstream_of_or_within ISO MGI:2685968|MGI:4459309 (MGI:4459001|PMID:20346937) RGD PMID:20346937 MGI:4459001 NCBI chr  X:103,436,731...103,440,904
Ensembl chr  X:103,436,729...103,443,349 		JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within ISO MGI:3614797 (MGI:4459001|PMID:20346937) RGD PMID:20346937 MGI:4459001 NCBI chr 8:87,974,444...87,979,002
Ensembl chr 8:87,974,776...87,978,969 		JBrowse link
G Sfrp4 secreted frizzled-related protein 4 involved_in ISO
IEA
ISS		 (PMID:27355534)
GO_REF:0000107
(MGI:5790095|PMID:27355534)
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:27355534 GO_REF:0000024 GO_REF:0000107 MGI:5790095 NCBI chr17:45,278,867...45,330,806
Ensembl chr17:45,234,097...45,330,736 		JBrowse link
G Ski Ski proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (MGI:1095997|PMID:9284043) RGD PMID:9284043 MGI:1095997 NCBI chr 5:165,713,525...165,782,134
Ensembl chr 5:165,714,093...165,782,733 		JBrowse link
G Sp5 Sp5 transcription factor acts_upstream_of_or_within ISO MGI:98472 (MGI:1927252|PMID:11071760) RGD PMID:11071760 MGI:1927252 NCBI chr 3:55,274,931...55,277,733
Ensembl chr 3:55,274,931...55,277,733 		JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO MGI:1927715 (MGI:1927252|PMID:11071760) RGD PMID:11071760 MGI:1927252 NCBI chr 1:52,298,104...52,309,813
Ensembl chr 1:52,298,099...52,305,864 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISS
ISO		 GO_REF:0000024
(MGI:80519|PMID:8622766)		 UniProt
RGD		 PMID:8622766 GO_REF:0000024 MGI:80519 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
bone trabecula formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col1a1 collagen type I alpha 1 chain acts_upstream_of_or_within ISO MGI:97009 (MGI:3710444|PMID:17440987) RGD PMID:17440987 MGI:3710444 NCBI chr10:79,883,622...79,900,625
Ensembl chr10:79,883,622...79,900,624 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:1857079 (MGI:5661140|PMID:22359666) RGD PMID:22359666 MGI:5661140 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715 		JBrowse link
G Fbn2 fibrillin 2 involved_in ISO (MGI:4836762|PMID:20855508) RGD PMID:20855508 MGI:4836762 NCBI chr18:51,499,670...51,703,976
Ensembl chr18:51,499,737...51,703,976 		JBrowse link
G Mmp2 matrix metallopeptidase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:88467 (MGI:3710444|PMID:17440987)		 Ensembl
RGD		 PMID:17440987 GO_REF:0000107 MGI:3710444 NCBI chr19:14,154,657...14,182,870
Ensembl chr19:14,154,657...14,182,870 		JBrowse link
G Msx2 msh homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1926381 (MGI:1355063|PMID:10742104)		 Ensembl
RGD		 PMID:10742104 GO_REF:0000107 MGI:1355063 NCBI chr17:11,097,214...11,102,879
Ensembl chr17:11,097,103...11,102,879 		JBrowse link
G Ppargc1b PPARG coactivator 1 beta involved_in ISO
IEA		 (MGI:3838421|PMID:19252502)
GO_REF:0000107		 RGD
Ensembl		 PMID:19252502 GO_REF:0000107 MGI:3838421 NCBI chr18:54,758,891...54,861,103
Ensembl chr18:54,758,902...54,861,194 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3045799 (MGI:3040721|PMID:14976225)		 Ensembl
RGD		 PMID:14976225 GO_REF:0000107 MGI:3040721 NCBI chr16:68,575,763...68,614,180
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
G Thbs3 thrombospondin 3 acts_upstream_of_or_within ISO MGI:3581964 (MGI:3581317|PMID:15964815) RGD PMID:15964815 MGI:3581317 NCBI chr 2:174,621,788...174,633,594
Ensembl chr 2:174,621,812...174,633,594 		JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO MGI:1931048 (MGI:5461755|PMID:22886301) RGD PMID:22886301 MGI:5461755 NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641 		JBrowse link
G Wnt10b Wnt family member 10B acts_upstream_of_or_within ISO MGI:3582610 (MGI:3574150|PMID:15728361) RGD PMID:15728361 MGI:3574150 NCBI chr 7:129,922,088...129,927,892
Ensembl chr 7:129,922,088...129,927,892 		JBrowse link
bronchus cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO MGI:2429649 (MGI:5524169|PMID:24218621) RGD PMID:24218621 MGI:5524169 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO MGI:3522206 (MGI:5524169|PMID:24218621) RGD PMID:24218621 MGI:5524169 NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733 		JBrowse link
cartilage condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1856465 (MGI:2664273|PMID:3070812)		 Ensembl
RGD		 PMID:3070812 GO_REF:0000107 MGI:2664273 NCBI chr 1:132,981,582...133,044,416
Ensembl chr 1:132,981,582...133,043,627 		JBrowse link
G Barx2 BARX homeobox 2 acts_upstream_of_or_within ISO (MGI:3578585|PMID:15800003) RGD PMID:15800003 MGI:3578585 NCBI chr 8:30,251,132...30,319,105
Ensembl chr 8:30,251,132...30,319,013 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within ISO MGI:2158498 (MGI:1351297|PMID:10631181) RGD PMID:10631181 MGI:1351297 NCBI chr 2:230,538,252...230,871,077
Ensembl chr 2:230,541,558...230,871,368 		JBrowse link
G Ccn2 cellular communication network factor 2 acts_upstream_of_or_within ISO (MGI:3050271|PMID:15305294) RGD PMID:15305294 MGI:3050271 NCBI chr 1:20,802,199...20,805,315
Ensembl chr 1:20,802,199...20,805,734 		JBrowse link
G Chad chondroadherin IEP RGD PMID:9461555 RGD:69806 NCBI chr10:79,512,170...79,515,941
Ensembl chr10:79,511,931...79,515,940 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within ISO MGI:1856399 (MGI:2664273|PMID:3070812) RGD PMID:3070812 MGI:2664273 NCBI chr 2:201,820,715...202,013,853
Ensembl chr 2:201,820,715...202,013,853 		JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:1857275 (MGI:2664273|PMID:3070812)
GO_REF:0000107		 RGD
Ensembl		 PMID:3070812 GO_REF:0000107 MGI:2664273 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
G Fgf4 fibroblast growth factor 4 acts_upstream_of_or_within ISO MGI:98726 (MGI:78390|PMID:8565825) RGD PMID:8565825 MGI:78390 NCBI chr 1:200,023,937...200,027,793
Ensembl chr 1:200,024,056...200,025,466 		JBrowse link
G Fgf6 fibroblast growth factor 6 acts_upstream_of_or_within ISO MGI:98726 (MGI:78390|PMID:8565825) RGD PMID:8565825 MGI:78390 NCBI chr 4:159,854,913...159,863,447
Ensembl chr 4:159,854,913...159,863,447 		JBrowse link
G Mapk14 mitogen activated protein kinase 14 involved_in IEA
ISO		 GO_REF:0000107
(MGI:5487758|PMID:17202865)		 Ensembl
RGD		 PMID:17202865 GO_REF:0000107 MGI:5487758 NCBI chr20:6,749,646...6,810,590
Ensembl chr20:6,749,670...6,810,589 		JBrowse link
G Mycn MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3790402|PMID:17360777)
GO_REF:0000107		 RGD
Ensembl		 PMID:17360777 GO_REF:0000107 MGI:3790402 NCBI chr 6:35,717,764...35,723,590
Ensembl chr 6:35,717,764...35,723,590 		JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within ISO MGI:1857219 (MGI:78390|PMID:8565825) RGD PMID:8565825 MGI:78390 NCBI chr 7:42,802,946...42,806,177
Ensembl chr 7:42,802,946...42,806,177 		JBrowse link
G Otor otoraplin involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
(MGI:1928405|PMID:10998416)		 RGD PMID:10998416 PMID:21873635 MGI:1928405, RGD:13792537 NCBI chr 3:130,415,339...130,418,601
Ensembl chr 3:130,415,339...130,418,601 		JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting acts_upstream_of_or_within ISO MGI:2152589 (MGI:2152028|PMID:11593033) RGD PMID:11593033 MGI:2152028 NCBI chr10:13,573,779...13,621,138
Ensembl chr10:13,573,021...13,621,128 		JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 acts_upstream_of_or_within ISO MGI:2183225 (MGI:3037488|PMID:14745966) RGD PMID:14745966 MGI:3037488 NCBI chr17:11,972,830...12,148,152
Ensembl chr17:11,972,830...12,148,152 		JBrowse link
G Sox5 SRY-box transcription factor 5 involved_in ISS
ISO		 GO_REF:0000024
(MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235)		 UniProt
RGD		 PMID:11702786 PMID:14993235 GO_REF:0000024 MGI:2446758 MGI:3037234 NCBI chr 4:176,781,375...177,736,833
Ensembl chr 4:176,785,892...177,736,852 		JBrowse link
G Sox6 SRY-box transcription factor 6 involved_in ISS
ISO		 GO_REF:0000024
(MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235)		 UniProt
RGD		 PMID:11702786 PMID:14993235 GO_REF:0000024 MGI:2446758 MGI:3037234 NCBI chr 1:169,723,306...170,334,846
Ensembl chr 1:169,729,194...170,277,386 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:2158693|MGI:2385468 (MGI:2159578|PMID:10319868), (MGI:2389523|PMID:12414734)		 UniProt
RGD		 PMID:10319868 PMID:12414734 GO_REF:0000024 MGI:2159578 MGI:2389523 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Sulf1 sulfatase 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 5:6,362,894...6,526,174
Ensembl chr 5:6,362,911...6,525,584 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 acts_upstream_of_or_within ISO MGI:95518|MGI:95520 (MGI:78390|PMID:8565825) RGD PMID:8565825 MGI:78390 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405 		JBrowse link
G Thra thyroid hormone receptor alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1860442 (MGI:894529|PMID:9250685)		 Ensembl
RGD		 PMID:9250685 GO_REF:0000107 MGI:894529 NCBI chr10:83,701,885...83,729,408
Ensembl chr10:83,700,755...83,729,936 		JBrowse link
G Uncx UNC homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1859373|MGI:1928812 (MGI:1855901|PMID:10804169), (MGI:1855902|PMID:10804168)		 Ensembl
RGD		 PMID:10804168 PMID:10804169 GO_REF:0000107 MGI:1855901 MGI:1855902 NCBI chr12:15,092,779...15,097,300
Ensembl chr12:15,092,784...15,097,300 		JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (PMID:17202865) RGD PMID:17202865 NCBI chr 4:123,863,108...123,908,981
Ensembl chr 4:123,863,108...123,908,981 		JBrowse link
cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO MGI:1856097 (MGI:83811|PMID:8895222) RGD PMID:8895222 MGI:83811 NCBI chr  X:71,094,144...71,201,550
Ensembl chr  X:71,094,202...71,198,354 		JBrowse link
G Bbs1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within ISO MGI:3767672 (MGI:5474015|PMID:19195025) RGD PMID:19195025 MGI:5474015 NCBI chr 1:202,184,812...202,204,118
Ensembl chr 1:202,186,125...202,204,086 		JBrowse link
G Bbs2 Bardet-Biedl syndrome 2 acts_upstream_of_or_within ISO MGI:3521669 (MGI:5474015|PMID:19195025) RGD PMID:19195025 MGI:5474015 NCBI chr19:10,909,653...10,944,998
Ensembl chr19:10,909,619...10,944,993 		JBrowse link
G Bmp3 bone morphogenetic protein 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:10,712,489...10,737,153
Ensembl chr14:10,712,489...10,737,153 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmp6 bone morphogenetic protein 6 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:26,318,121...26,469,691
Ensembl chr17:26,318,569...26,470,365 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO MGI:2158390|MGI:3577961 (MGI:3576405|PMID:15492776) RGD PMID:15492776 MGI:3576405 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Cd44 CD44 molecule (Indian blood group) involved_in ISO
IEA		 (PMID:11944887)
GO_REF:0000107		 RGD
Ensembl		 PMID:11944887 GO_REF:0000107 NCBI chr 3:89,155,850...89,244,615
Ensembl chr 3:89,157,058...89,244,620 		JBrowse link
G Cfh complement factor H acts_upstream_of_or_within ISO (MGI:4421084|PMID:19828624) RGD PMID:19828624 MGI:4421084 NCBI chr13:51,512,376...51,613,829
Ensembl chr13:51,511,828...51,613,838 		JBrowse link
G Chst11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within ISO MGI:3768254 (MGI:3767479|PMID:16079159) RGD PMID:16079159 MGI:3767479 NCBI chr 7:20,524,535...20,743,008
Ensembl chr 7:20,528,100...20,743,111 		JBrowse link
G Chsy1 chondroitin sulfate synthase 1 acts_upstream_of_or_within ISO MGI:5007063 (MGI:5316547|PMID:22280990) RGD PMID:22280990 MGI:5316547 NCBI chr 1:119,689,626...119,750,711
Ensembl chr 1:119,686,350...119,750,601 		JBrowse link
G Cnmd chondromodulin involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:55,041,548...55,066,297
Ensembl chr15:55,041,561...55,066,297 		JBrowse link
G Col10a1 collagen type X alpha 1 chain IMP RGD PMID:10853827 RGD:704421 NCBI chr20:38,183,103...38,189,488
Ensembl chr20:38,182,494...38,189,494 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within ISO MGI:1856399 (MGI:53676|PMID:4100752), (MGI:53732|PMID:4110409), (MGI:54324|PMID:886247), (MGI:70833|PMID:7859283) RGD PMID:886247 PMID:4100752 PMID:4110409 PMID:7859283 MGI:53676 MGI:53732 MGI:54324 MGI:60257 MGI:70833 NCBI chr 2:201,820,715...202,013,853
Ensembl chr 2:201,820,715...202,013,853 		JBrowse link
G Col11a2 collagen type XI alpha 2 chain involved_in ISO
IBA		 (PMID:9188673)
PMID:21873635		 RGD PMID:9188673 PMID:21873635 RGD:13792537 NCBI chr20:4,786,932...4,816,598
Ensembl chr20:4,786,929...4,815,985 		JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within IEP
ISO		 MGI:1857275|MGI:2152978 (MGI:1315157|PMID:9832566), (MGI:1334159|PMID:10100048), (MGI:3618042|PMID:11171689), (MGI:3697977|PMID:11680679), (MGI:55057|PMID:7276808), (MGI:77563|PMID:7590256), (MGI:86483|PMID:9061443), (MGI:892501|PMID:9165353) RGD PMID:7276808 PMID:7590256 PMID:9061443 PMID:9165353 PMID:9832566 More... MGI:1315157 MGI:1334159 MGI:3618042 MGI:3697977 MGI:55057 MGI:77563 MGI:86483 MGI:892501, RGD:70694 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in ISO MGI:1857431 (MGI:6405577|PMID:31655293) RGD PMID:31655293 MGI:6405577 NCBI chr 9:47,374,611...47,410,547
Ensembl chr 9:47,374,593...47,410,547 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain acts_upstream_of_or_within ISO MGI:2153356 (MGI:5435140|PMID:22448243), (MGI:5776689|PMID:19248115) RGD PMID:19248115 PMID:22448243 MGI:5435140 MGI:5776689 NCBI chr20:11,906,105...11,924,599
Ensembl chr20:11,905,957...11,924,597 		JBrowse link
G Col9a1 collagen type IX alpha 1 chain acts_upstream_of_or_within ISO MGI:2152964|MGI:88469 (MGI:3697977|PMID:11680679), (MGI:3807836|PMID:18191556) RGD PMID:11680679 PMID:18191556 MGI:3697977 MGI:3807836 NCBI chr 9:26,585,034...26,668,222
Ensembl chr 9:26,585,034...26,668,213 		JBrowse link
G Comp cartilage oligomeric matrix protein acts_upstream_of_or_within ISO MGI:3758741|MGI:5550566|MGI:88465 (MGI:3723532|PMID:17588960), (MGI:3807836|PMID:18191556), (MGI:5510903|PMID:23951406) RGD PMID:17588960 PMID:18191556 PMID:23951406 MGI:3723532 MGI:3807836 MGI:5510903 NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,047,207...19,055,845 		JBrowse link
G Cr2 complement C3d receptor 2 acts_upstream_of_or_within ISO (MGI:4421084|PMID:19828624) RGD PMID:19828624 MGI:4421084 NCBI chr13:106,678,579...106,716,595
Ensembl chr13:106,685,413...106,716,235 		JBrowse link
G Creb3l2 cAMP responsive element binding protein 3-like 2 involved_in ISS
ISO		 GO_REF:0000024
(MGI:4438315|PMID:19767744)		 UniProt
RGD		 PMID:19767744 GO_REF:0000024 MGI:4438315 NCBI chr 4:65,907,570...66,112,078
Ensembl chr 4:65,907,655...66,023,763 		JBrowse link
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 acts_upstream_of_or_within ISO MGI:4868209 (MGI:4849906|PMID:20812917) RGD PMID:20812917 MGI:4849906 NCBI chr16:20,995,210...21,330,586
Ensembl chr16:21,235,784...21,330,319 		JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO (PMID:28263186)
(MGI:5908314|PMID:28263186)		 RGD PMID:28263186 MGI:5908314 NCBI chr 3:117,861,916...117,882,680
Ensembl chr 3:117,861,653...117,882,680 		JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:3589208 (MGI:4849577|PMID:21098571) RGD PMID:21098571 MGI:4849577 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965 		JBrowse link
G Dlx2 distal-less homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857828 (MGI:76977|PMID:7590232)		 Ensembl
RGD		 PMID:7590232 GO_REF:0000107 MGI:76977 NCBI chr 3:56,370,238...56,373,581
Ensembl chr 3:56,370,483...56,373,597 		JBrowse link
G Dspp dentin sialophosphoprotein IEP femoral head RGD PMID:20679519 RGD:12914771 NCBI chr14:5,565,562...5,571,669
Ensembl chr14:5,565,629...5,571,672 		JBrowse link
G Edn1 endothelin 1 acts_upstream_of_or_within ISO MGI:1857637 (MGI:65725|PMID:8152482) RGD PMID:8152482 MGI:65725 NCBI chr17:22,454,924...22,460,812
Ensembl chr17:22,454,420...22,460,885 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:2385534|MGI:6402836 (MGI:3630246|PMID:15625282), (MGI:5616480|PMID:25260930), (MGI:6101307|PMID:24770645) RGD PMID:15625282 PMID:24770645 PMID:25260930 MGI:3630246 MGI:5616480 MGI:6101307 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715 		JBrowse link
G Errfi1 ERBB receptor feedback inhibitor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:5575860 (MGI:5552999|PMID:24550287)
GO_REF:0000107		 RGD
Ensembl		 PMID:24550287 GO_REF:0000107 MGI:5552999 NCBI chr 5:161,323,981...161,337,289
Ensembl chr 5:161,323,998...161,337,282 		JBrowse link
G Esrra estrogen related receptor, alpha IMP RGD PMID:17170100 RGD:1625657 NCBI chr 1:204,104,100...204,114,182
Ensembl chr 1:204,104,101...204,114,268 		JBrowse link
G Evc EvC ciliary complex subunit 1 IEP RGD PMID:15278943 RGD:1598913 NCBI chr14:73,456,181...73,498,955
Ensembl chr14:73,456,222...73,498,099 		JBrowse link
G Fbxw4 F-box and WD repeat domain containing 4 acts_upstream_of_or_within ISO MGI:1857833 (MGI:1278141|PMID:9733575) RGD PMID:9733575 MGI:1278141 NCBI chr 1:244,426,892...244,514,188
Ensembl chr 1:244,426,896...244,514,163 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO MGI:1931521 (MGI:3584218|PMID:15781473) RGD PMID:15781473 MGI:3584218 NCBI chr14:76,987,242...77,002,671
Ensembl chr14:76,987,993...77,003,341 		JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit acts_upstream_of_or_within ISO (MGI:3512699|PMID:15509771) RGD PMID:15509771 MGI:3512699 NCBI chr 6:24,297,898...24,319,219
Ensembl chr 6:24,300,956...24,320,034 		JBrowse link
G Gata3 GATA binding protein 3 involved_in ISO (MGI:6110918|PMID:29247144) RGD PMID:29247144 MGI:6110918 NCBI chr17:68,643,760...68,666,000
Ensembl chr17:68,643,873...68,665,391 		JBrowse link
G Gnas GNAS complex locus acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:3043361 (MGI:3619837|PMID:15797856)
GO_REF:0000107		 RGD
Ensembl		 PMID:15797856 GO_REF:0000107 MGI:3619837 NCBI chr 3:163,071,003...163,136,350
Ensembl chr 3:163,071,417...163,127,262
Ensembl chr 3:163,071,417...163,127,262 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5285816|PMID:17093926)
(PMID:17093926)		 UniProt
RGD		 PMID:17093926 GO_REF:0000024 MGI:5285816 NCBI chr 5:165,522,138...165,523,684
Ensembl chr 5:165,522,234...165,523,001 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO MGI:2386649|MGI:2386679 (MGI:2153426|PMID:11691837) RGD PMID:11691837 MGI:2153426 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Hoxa3 homeobox A3 acts_upstream_of_or_within ISO MGI:96184|MGI:96207 (MGI:1195045|PMID:9441667) RGD PMID:9441667 MGI:1195045 NCBI chr 4:81,269,243...81,313,218
Ensembl chr 4:81,269,243...81,313,218 		JBrowse link
G Hoxb3 homeo box B3 acts_upstream_of_or_within ISO MGI:96175|MGI:96207 (MGI:1195045|PMID:9441667) RGD PMID:9441667 MGI:1195045 NCBI chr10:81,258,739...81,314,134
Ensembl chr10:81,299,357...81,313,107 		JBrowse link
G Hoxc4 homeo box C4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857570 (MGI:79121|PMID:8626021)		 Ensembl
RGD		 PMID:8626021 GO_REF:0000107 MGI:79121 NCBI chr 7:134,135,279...134,173,133
Ensembl chr 7:134,170,591...134,173,133 		JBrowse link
G Hoxd3 homeo box D3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:96175|MGI:96184 (MGI:1195045|PMID:9441667)		 Ensembl
RGD		 PMID:9441667 GO_REF:0000107 MGI:1195045 NCBI chr 3:59,638,708...59,650,282
Ensembl chr 3:59,638,708...59,650,282 		JBrowse link
G Hyal1 hyaluronidase 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:11944887)		 UniProt
Ensembl
RGD		 PMID:11944887 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:108,250,668...108,254,519
Ensembl chr 8:108,250,667...108,260,210 		JBrowse link
G Hyal2 hyaluronidase 2 involved_in ISO
IEA
ISS		 (PMID:11944887)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:11944887 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:108,241,895...108,246,853
Ensembl chr 8:108,243,133...108,246,850 		JBrowse link
G Hyal3 hyaluronidase 3 involved_in ISO (PMID:11944887) RGD PMID:11944887 NCBI chr 8:108,254,385...108,260,020
Ensembl chr 8:108,250,667...108,260,647 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within
involved_in		 ISO MGI:1934258 (MGI:3695832|PMID:17191253)
(PMID:17889828)		 RGD PMID:17191253 PMID:17889828 MGI:3695832 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Il17f interleukin 17F involved_in IEA
ISO		 GO_REF:0000107
(PMID:11574464)		 Ensembl
RGD		 PMID:11574464 GO_REF:0000107 NCBI chr 9:23,190,094...23,201,482
Ensembl chr 9:23,190,100...23,201,482 		JBrowse link
G Itgb8 integrin subunit beta 8 involved_in ISO (PMID:24312400) RGD PMID:24312400 NCBI chr 6:140,125,002...140,208,261
Ensembl chr 6:140,127,203...140,208,476 		JBrowse link
G Lum lumican IEP RGD PMID:19746167 RGD:2317685 NCBI chr 7:32,358,990...32,365,794
Ensembl chr 7:32,358,614...32,365,793 		JBrowse link
G Mapk3 mitogen activated protein kinase 3 acts_upstream_of_or_within ISO (MGI:3758399|PMID:17644814) RGD PMID:17644814 MGI:3758399 NCBI chr 1:181,366,646...181,372,863
Ensembl chr 1:181,366,637...181,372,863 		JBrowse link
G Matn3 matrilin 3 acts_upstream_of_or_within ISO MGI:3759029 (MGI:5510903|PMID:23951406) RGD PMID:23951406 MGI:5510903 NCBI chr 6:31,748,517...31,768,564
Ensembl chr 6:31,748,474...31,768,101 		JBrowse link
G Mgp matrix Gla protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:169,766,290...169,769,612
Ensembl chr 4:169,766,279...169,769,667 		JBrowse link
G Mir140 microRNA 140 acts_upstream_of_or_within ISO MGI:4461000 (MGI:4454342|PMID:20466812) RGD PMID:20466812 MGI:4454342 NCBI chr19:35,465,577...35,465,675
Ensembl chr19:35,465,577...35,465,675 		JBrowse link
G Mkks MKKS centrosomal shuttling protein acts_upstream_of_or_within ISO MGI:3526444 (MGI:5474015|PMID:19195025) RGD PMID:19195025 MGI:5474015 NCBI chr 3:124,201,877...124,221,142
Ensembl chr 3:124,201,877...124,220,162 		JBrowse link
G Msx1 msh homeobox 1 IMP RGD PMID:10332146 RGD:1600462 NCBI chr14:72,961,036...72,964,970
Ensembl chr14:72,961,148...72,964,966 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within IMP
ISO		 MGI:1926381 (MGI:1355063|PMID:10742104), (MGI:2151298|PMID:11668602) RGD PMID:10742104 PMID:11668602 PMID:10332146 MGI:1355063 MGI:2151298, RGD:1600462 NCBI chr17:11,097,214...11,102,879
Ensembl chr17:11,097,103...11,102,879 		JBrowse link
G Nfatc2 nuclear factor of activated T-cells 2 involved_in ISO (PMID:35789258)
(MGI:1351237|PMID:10620601)		 RGD PMID:10620601 PMID:35789258 MGI:1351237 NCBI chr 3:157,195,970...157,328,640
Ensembl chr 3:157,198,872...157,328,325 		JBrowse link
G Nfia nuclear factor I/A involved_in ISO
IEA		 MGI:2449024 (MGI:6110918|PMID:29247144)
GO_REF:0000107		 RGD
Ensembl		 PMID:29247144 GO_REF:0000107 MGI:6110918 NCBI chr 5:112,436,655...112,781,878
Ensembl chr 5:112,436,644...112,775,885 		JBrowse link
G Nog noggin involved_in
acts_upstream_of		 IEA
ISO		 GO_REF:0000104
(MGI:1353721|PMID:10684250)		 UniProt
RGD		 PMID:10684250 GO_REF:0000104 MGI:1353721 NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Npr2 natriuretic peptide receptor 2 involved_in ISO MGI:1856702|MGI:3774275 (MGI:3579766|PMID:15722353), (MGI:3770504|PMID:17728275) RGD PMID:15722353 PMID:17728275 MGI:3579766 MGI:3770504 NCBI chr 5:57,883,171...57,901,590
Ensembl chr 5:57,883,171...57,901,580 		JBrowse link
G Pax7 paired box 7 acts_upstream_of_or_within ISO MGI:1857831 (MGI:79520|PMID:8631261) RGD PMID:8631261 MGI:79520 NCBI chr 5:151,996,368...152,098,023
Ensembl chr 5:151,999,092...152,097,979 		JBrowse link
G Pitx1 paired-like homeodomain 1 acts_upstream_of_or_within ISO MGI:1857659 (MGI:1333095|PMID:10101115) RGD PMID:10101115 MGI:1333095 NCBI chr17:8,794,134...8,800,292
Ensembl chr17:8,794,134...8,800,291 		JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting involved_in ISO (PMID:11891195) RGD PMID:11891195 NCBI chr10:13,573,779...13,621,138
Ensembl chr10:13,573,021...13,621,128 		JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within ISO MGI:1857640|MGI:98218 (MGI:1321048|PMID:9876178), (MGI:73363|PMID:7758948) RGD PMID:7758948 PMID:9876178 MGI:1321048 MGI:73363 NCBI chr13:75,600,777...75,671,896
Ensembl chr13:75,601,706...75,670,866 		JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within ISO MGI:97712 (MGI:1321048|PMID:9876178) RGD PMID:9876178 MGI:1321048 NCBI chr 3:14,132,574...14,168,533
Ensembl chr 3:14,094,004...14,168,535 		JBrowse link
G Satb2 SATB homeobox 2 acts_upstream_of_or_within ISO MGI:3692768 (MGI:3692344|PMID:16751105) RGD PMID:16751105 MGI:3692344 NCBI chr 9:58,348,027...58,534,256
Ensembl chr 9:58,350,246...58,530,707 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO MGI:3810257 (MGI:3806414|PMID:18729207) RGD PMID:18729207 MGI:3806414 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
G Smad1 SMAD family member 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:1328787|MGI:1859993 (MGI:3840027|PMID:19224984)
GO_REF:0000107		 RGD
Ensembl		 PMID:19224984 GO_REF:0000107 MGI:3840027 NCBI chr19:28,513,130...28,573,665
Ensembl chr19:28,513,131...28,573,651 		JBrowse link
G Smad5 SMAD family member 5 acts_upstream_of_or_within ISO MGI:109452|MGI:1859993 (MGI:3840027|PMID:19224984) RGD PMID:19224984 MGI:3840027 NCBI chr17:7,862,332...7,891,678
Ensembl chr17:7,864,720...7,891,634 		JBrowse link
G Smad9 SMAD family member 9 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:109452|MGI:1328787 (MGI:3840027|PMID:19224984)
GO_REF:0000107		 RGD
Ensembl		 PMID:19224984 GO_REF:0000107 MGI:3840027 NCBI chr 2:138,956,326...139,006,315
Ensembl chr 2:138,986,471...139,006,307 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 acts_upstream_of_or_within ISO MGI:3575405 (MGI:3715574|PMID:17591962), (MGI:5805317|PMID:27325675) RGD PMID:17591962 PMID:27325675 MGI:3715574 MGI:5805317 NCBI chr19:34,162,337...34,245,786
Ensembl chr19:34,162,341...34,245,749 		JBrowse link
G Snorc secondary ossification center associated regulator of chondrocyte maturation involved_in ISO (MGI:6103145|PMID:28323137) RGD PMID:28323137 MGI:6103145 NCBI chr 9:88,140,510...88,145,527
Ensembl chr 9:88,140,419...88,145,891 		JBrowse link
G Sox5 SRY-box transcription factor 5 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
(MGI:5780653|PMID:26150426), (MGI:6414706|PMID:15529345)
MGI:98368 (MGI:3525903|PMID:15634692)		 UniProt
RGD		 PMID:15529345 PMID:15634692 PMID:26150426 GO_REF:0000024 MGI:3525903 MGI:5780653 MGI:6414706 NCBI chr 4:176,781,375...177,736,833
Ensembl chr 4:176,785,892...177,736,852 		JBrowse link
G Sox6 SRY-box transcription factor 6 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
(MGI:5780653|PMID:26150426), (MGI:6414706|PMID:15529345)
MGI:98367 (MGI:3525903|PMID:15634692)		 UniProt
RGD		 PMID:15529345 PMID:15634692 PMID:26150426 GO_REF:0000024 MGI:3525903 MGI:5780653 MGI:6414706 NCBI chr 1:169,723,306...170,334,846
Ensembl chr 1:169,729,194...170,277,386 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of
involved_in
acts_upstream_of_or_within		 TAS
ISO
NAS
ISS
IEP		 (MGI:3839710|PMID:19047045)
(MGI:5908314|PMID:28263186), (MGI:6414706|PMID:15529345)
MGI:2158693 (MGI:2135696|PMID:11371614)
PMID:19828133
GO_REF:0000024		 RGD
UniProt		 PMID:11371614 PMID:15529345 PMID:19047045 PMID:28263186 PMID:11514554 More... GO_REF:0000024 MGI:2135696 MGI:3839710 MGI:5908314 MGI:6414706, RGD:70568, RGD:8553796, RGD:1599098 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Sulf1 sulfatase 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5306560|PMID:20479257)		 UniProt
RGD		 PMID:20479257 GO_REF:0000024 MGI:5306560 NCBI chr 5:6,362,894...6,526,174
Ensembl chr 5:6,362,911...6,525,584 		JBrowse link
G Sulf2 sulfatase 2 involved_in ISO (MGI:5306560|PMID:20479257) RGD PMID:20479257 MGI:5306560 NCBI chr 3:154,822,079...154,904,566
Ensembl chr 3:154,822,085...154,904,415 		JBrowse link
G Tapt1 transmembrane anterior posterior transformation 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:66,873,467...66,919,737
Ensembl chr14:66,873,459...66,919,741 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 involved_in ISO (MGI:3796269|PMID:18498113) RGD PMID:18498113 MGI:3796269 NCBI chr 8:115,794,537...115,883,615
Ensembl chr 8:115,794,537...115,883,228 		JBrowse link
G Timp1 TIMP metallopeptidase inhibitor 1 IEP RGD PMID:16208432 RGD:8694091 NCBI chr  X:1,212,969...1,217,714
Ensembl chr  X:1,212,972...1,217,664 		JBrowse link
G Trip11 thyroid hormone receptor interactor 11 involved_in ISO (PMID:30728324) RGD PMID:30728324 NCBI chr 6:120,995,242...121,067,693
Ensembl chr 6:120,998,733...121,067,781 		JBrowse link
G Tyms thymidylate synthetase IEP RGD PMID:3471366 RGD:2317423 NCBI chr 9:113,313,454...113,329,551
Ensembl chr 9:113,313,452...113,329,536 		JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:3,697,032...3,718,230
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (MGI:4821073|PMID:16826533) RGD PMID:16826533 MGI:4821073 NCBI chr 4:123,863,108...123,908,981
Ensembl chr 4:123,863,108...123,908,981 		JBrowse link
G Wnt9a Wnt family member 9A acts_upstream_of ISO (MGI:3839710|PMID:19047045) RGD PMID:19047045 MGI:3839710 NCBI chr10:44,094,140...44,121,134
Ensembl chr10:44,094,140...44,121,133 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 involved_in ISS
ISO		 GO_REF:0000024
(PMID:21547890)		 UniProt
RGD		 PMID:21547890 GO_REF:0000024 NCBI chr 8:48,989,376...49,177,011
Ensembl chr 8:48,994,566...49,177,011 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857799 (MGI:1195626|PMID:9389660)		 Ensembl
RGD		 PMID:9389660 GO_REF:0000107 MGI:1195626 NCBI chr17:51,948,948...52,116,018
Ensembl chr17:51,948,948...52,115,214 		JBrowse link
cartilage development involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta synthase acts_upstream_of_or_within ISO MGI:1857139 (MGI:3656462|PMID:15622513) RGD PMID:15622513 MGI:3656462 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764 		JBrowse link
G Col1a1 collagen type I alpha 1 chain acts_upstream_of_or_within ISO MGI:3769585 (MGI:3769669|PMID:18248096) RGD PMID:18248096 MGI:3769669 NCBI chr10:79,883,622...79,900,625
Ensembl chr10:79,883,622...79,900,624 		JBrowse link
G Col2a1 collagen type II alpha 1 chain involved_in
acts_upstream_of_or_within		 IEP
IEA
ISO		 mandibular condylar cartilage
GO_REF:0000107
MGI:1857275|MGI:2152978 (MGI:3697977|PMID:11680679), (MGI:84914|PMID:8989518), (MGI:85592|PMID:9022054)		 Ensembl
RGD		 PMID:8989518 PMID:9022054 PMID:11680679 PMID:12924823 GO_REF:0000107 MGI:3697977 MGI:84914 MGI:85592, RGD:8661659 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (MGI:4946896|PMID:21185280), (MGI:5528913|PMID:23958822) RGD PMID:21185280 PMID:23958822 MGI:4946896 MGI:5528913 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Ghr growth hormone receptor IEP RGD PMID:15749813 RGD:2307373 NCBI chr 2:52,541,452...52,804,960
Ensembl chr 2:52,542,594...52,804,735 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO MGI:96203 (MGI:3043491|PMID:14668414) RGD PMID:14668414 MGI:3043491 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172 (MGI:3043491|PMID:14668414) RGD PMID:14668414 MGI:3043491 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Hspg2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO MGI:1934891 (MGI:1930356|PMID:10545953) RGD PMID:10545953 MGI:1930356 NCBI chr 5:149,677,437...149,778,594
Ensembl chr 5:149,677,476...149,778,594 		JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:3628798 (MGI:3621617|PMID:16537395)
GO_REF:0000107		 RGD
Ensembl		 PMID:16537395 GO_REF:0000107 MGI:3621617 NCBI chr 2:151,217,049...151,227,180
Ensembl chr 2:151,217,552...151,227,143 		JBrowse link
G Sik3 SIK family kinase 3 acts_upstream_of_or_within ISO MGI:5317918 (MGI:5316542|PMID:22318228) RGD PMID:22318228 MGI:5316542 NCBI chr 8:46,312,253...46,522,444
Ensembl chr 8:46,311,989...46,522,444 		JBrowse link
G Trpv4 transient receptor potential cation channel, subfamily V, member 4 involved_in ISO (PMID:26249260) RGD PMID:26249260 NCBI chr12:41,938,533...41,977,517
Ensembl chr12:41,938,560...41,977,517 		JBrowse link
cartilage morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO MGI:103580 (MGI:3765375|PMID:17764670) RGD PMID:17764670 MGI:3765375 NCBI chr10:42,006,646...42,009,213
Ensembl chr10:42,006,651...42,009,213 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:103577 (MGI:3765375|PMID:17764670)		 Ensembl
RGD		 PMID:17764670 GO_REF:0000107 MGI:3765375 NCBI chr16:32,917,448...32,920,791
Ensembl chr16:32,917,823...32,919,891 		JBrowse link
G Hoxa5 homeo box A5 acts_upstream_of_or_within ISO MGI:2150397 (MGI:1195049|PMID:9441679) RGD PMID:9441679 MGI:1195049 NCBI chr 4:81,302,341...81,306,234
Ensembl chr 4:81,302,353...81,306,234 		JBrowse link
G Mef2c myocyte enhancer factor 2C acts_upstream_of_or_within ISO MGI:3603182 (MGI:3714538|PMID:17420000) RGD PMID:17420000 MGI:3714538 NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880 		JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO MGI:1933766 (MGI:3608570|PMID:12489152) RGD PMID:12489152 MGI:3608570 NCBI chr14:72,961,036...72,964,970
Ensembl chr14:72,961,148...72,964,966 		JBrowse link
G Snai1 snail family transcriptional repressor 1 acts_upstream_of_or_within ISO MGI:1096393 (MGI:3709678|PMID:17376812) RGD PMID:17376812 MGI:3709678 NCBI chr 3:156,248,479...156,252,969
Ensembl chr 3:156,248,485...156,252,969 		JBrowse link
G Snai2 snail family transcriptional repressor 2 acts_upstream_of_or_within ISO MGI:98330 (MGI:3709678|PMID:17376812) RGD PMID:17376812 MGI:3709678 NCBI chr11:86,182,788...86,186,203
Ensembl chr11:86,181,909...86,186,200 		JBrowse link
chondroblast differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan IEP RGD PMID:20001227 RGD:2315747 NCBI chr 1:132,981,582...133,044,416
Ensembl chr 1:132,981,582...133,043,627 		JBrowse link
G Ccn1 cellular communication network factor 1 acts_upstream_of_or_within ISO (MGI:1195020|PMID:9441684) RGD PMID:9441684 MGI:1195020 NCBI chr 2:234,562,410...234,565,370
Ensembl chr 2:234,562,408...234,565,484 		JBrowse link
G Fgf2 fibroblast growth factor 2 involved_in ISO (PMID:17167778) RGD PMID:17167778 NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221 		JBrowse link
G Fgf4 fibroblast growth factor 4 involved_in ISO (PMID:17167778) RGD PMID:17167778 NCBI chr 1:200,023,937...200,027,793
Ensembl chr 1:200,024,056...200,025,466 		JBrowse link
G Gdf5 growth differentiation factor 5 involved_in ISO (PMID:25092592) RGD PMID:25092592 NCBI chr 3:144,454,316...144,458,508
Ensembl chr 3:144,454,338...144,458,612 		JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within ISO (MGI:1353721|PMID:10684250) RGD PMID:10684250 MGI:1353721 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142 		JBrowse link
chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1856465 (MGI:1270958|PMID:9664687)		 Ensembl
RGD		 PMID:9664687 GO_REF:0000107 MGI:1270958 NCBI chr 1:132,981,582...133,044,416
Ensembl chr 1:132,981,582...133,043,627 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 involved_in ISO (PMID:9442116) RGD PMID:9442116 NCBI chr 9:61,192,718...61,307,280
Ensembl chr 9:61,190,566...61,301,809 		JBrowse link
G Bpnt2 3'(2'), 5'-bisphosphate nucleotidase 2 acts_upstream_of_or_within ISO MGI:3806990 (MGI:3799383|PMID:18539921) RGD PMID:18539921 MGI:3799383 NCBI chr 5:17,775,684...17,802,570
Ensembl chr 5:17,772,608...17,802,570 		JBrowse link
G Chst11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:3768254 (MGI:3767479|PMID:16079159)
GO_REF:0000107		 RGD
Ensembl		 PMID:16079159 GO_REF:0000107 MGI:3767479 NCBI chr 7:20,524,535...20,743,008
Ensembl chr 7:20,528,100...20,743,111 		JBrowse link
G Chsy1 chondroitin sulfate synthase 1 acts_upstream_of_or_within ISO MGI:5007063 (MGI:5316547|PMID:22280990) RGD PMID:22280990 MGI:5316547 NCBI chr 1:119,689,626...119,750,711
Ensembl chr 1:119,686,350...119,750,601 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within ISO MGI:1856399 (MGI:53676|PMID:4100752) RGD PMID:4100752 MGI:53676 NCBI chr 2:201,820,715...202,013,853
Ensembl chr 2:201,820,715...202,013,853 		JBrowse link
G Comp cartilage oligomeric matrix protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3758741|MGI:5550566 (MGI:3723532|PMID:17588960), (MGI:5550565|PMID:22006726)		 Ensembl
RGD		 PMID:17588960 PMID:22006726 GO_REF:0000107 MGI:3723532 MGI:5550565 NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,047,207...19,055,845 		JBrowse link
G Ecm1 extracellular matrix protein 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4452294|PMID:20138147)
GO_REF:0000107		 RGD
Ensembl		 PMID:20138147 GO_REF:0000107 MGI:4452294 NCBI chr 2:183,287,491...183,292,729
Ensembl chr 2:183,287,322...183,292,671 		JBrowse link
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 acts_upstream_of_or_within ISO MGI:2183829 (MGI:2670283|PMID:12865332) RGD PMID:12865332 MGI:2670283 NCBI chr 4:102,805,495...102,866,914
Ensembl chr 4:102,805,510...102,866,911 		JBrowse link
G Fgf18 fibroblast growth factor 18 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:2178751 (MGI:3703411|PMID:17014841)
GO_REF:0000107		 RGD
Ensembl		 PMID:17014841 GO_REF:0000107 MGI:3703411 NCBI chr10:17,706,011...17,737,702
Ensembl chr10:17,706,174...17,736,818 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of ISO MGI:96203 (MGI:3043491|PMID:14668414) RGD PMID:14668414 MGI:3043491 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of ISO MGI:96172 (MGI:3043491|PMID:14668414) RGD PMID:14668414 MGI:3043491 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Mia3 MIA SH3 domain ER export factor 3 acts_upstream_of_or_within ISO MGI:5007248 (MGI:5008683|PMID:21606205) RGD PMID:21606205 MGI:5008683 NCBI chr13:94,970,421...95,012,071
Ensembl chr13:94,970,424...95,011,972 		JBrowse link
G Msx2 msh homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1926381 (MGI:1355063|PMID:10742104)		 Ensembl
RGD		 PMID:10742104 GO_REF:0000107 MGI:1355063 NCBI chr17:11,097,214...11,102,879
Ensembl chr17:11,097,103...11,102,879 		JBrowse link
G Rarg retinoic acid receptor, gamma involved_in ISO (MGI:3848572|PMID:19389355) RGD PMID:19389355 MGI:3848572 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Runx2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2176466 (MGI:1334093|PMID:10213384)		 Ensembl
RGD		 PMID:10213384 GO_REF:0000107 MGI:1334093 NCBI chr 9:16,167,504...16,492,826
Ensembl chr 9:16,167,482...16,492,167 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO MGI:3810257 (MGI:3806414|PMID:18729207) RGD PMID:18729207 MGI:3806414 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:3605739 (MGI:3714677|PMID:17481601)
GO_REF:0000107		 RGD
Ensembl		 PMID:17481601 GO_REF:0000107 MGI:3714677 NCBI chr 2:151,217,049...151,227,180
Ensembl chr 2:151,217,552...151,227,143 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 acts_upstream_of_or_within ISO MGI:3575405 (MGI:3715574|PMID:17591962), (MGI:5582670|PMID:24505141) RGD PMID:17591962 PMID:24505141 MGI:3715574 MGI:5582670 NCBI chr19:34,162,337...34,245,786
Ensembl chr19:34,162,341...34,245,749 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (MGI:3784676|PMID:18415932) RGD PMID:18415932 MGI:3784676 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Sulf1 sulfatase 1 involved_in IEA
ISO
ISS		 GO_REF:0000104
(MGI:5306560|PMID:20479257)
GO_REF:0000024		 UniProt
RGD		 PMID:20479257 GO_REF:0000024 GO_REF:0000104 MGI:5306560 NCBI chr 5:6,362,894...6,526,174
Ensembl chr 5:6,362,911...6,525,584 		JBrowse link
G Sulf2 sulfatase 2 involved_in ISO (MGI:5306560|PMID:20479257) RGD PMID:20479257 MGI:5306560 NCBI chr 3:154,822,079...154,904,566
Ensembl chr 3:154,822,085...154,904,415 		JBrowse link
chondrocyte development involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Serpinh1 serpin family H member 1 acts_upstream_of_or_within ISO MGI:2176070|MGI:5505265 (MGI:5494537|PMID:22492985) RGD PMID:22492985 MGI:5494537 NCBI chr 1:153,643,500...153,650,853
Ensembl chr 1:153,643,510...153,650,801 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1856877 (MGI:5293259|PMID:21788370)		 Ensembl
RGD		 PMID:21788370 GO_REF:0000107 MGI:5293259 NCBI chr19:34,162,337...34,245,786
Ensembl chr19:34,162,341...34,245,749 		JBrowse link
chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts12 ADAM metallopeptidase with thrombospondin type 1 motif, 12 involved_in ISO MGI:1347346 (MGI:6193362|PMID:29618652) RGD PMID:29618652 MGI:6193362 NCBI chr 2:60,032,873...60,327,629
Ensembl chr 2:60,032,873...60,327,629 		JBrowse link
G Adamts7 ADAM metallopeptidase with thrombospondin type 1 motif, 7 involved_in ISO MGI:2146046 (MGI:6193362|PMID:29618652) RGD PMID:29618652 MGI:6193362 NCBI chr 8:90,704,727...90,744,333
Ensembl chr 8:90,704,727...90,744,328 		JBrowse link
G Arid5a AT-rich interaction domain 5A acts_upstream_of_or_within ISO (MGI:5317270|PMID:21346191) RGD PMID:21346191 MGI:5317270 NCBI chr 9:38,534,612...38,549,467
Ensembl chr 9:38,534,590...38,547,597 		JBrowse link
G Bmp2 bone morphogenetic protein 2 involved_in IEA
ISO		 GO_REF:0000107
(PMID:16194878)		 Ensembl
RGD		 PMID:16194878 GO_REF:0000107 NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of		 ISS
ISO
IEA		 GO_REF:0000024
(MGI:3714677|PMID:17481601)
(MGI:4418577|PMID:20059955)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:17481601 PMID:20059955 GO_REF:0000024 GO_REF:0000107 MGI:3714677 MGI:4418577 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A involved_in ISO (MGI:5522580|PMID:24098149) RGD PMID:24098149 MGI:5522580 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within
involved_in		 ISO MGI:1927616|MGI:95688 (MGI:3819026|PMID:18363966)
(MGI:5522580|PMID:24098149)		 RGD PMID:18363966 PMID:24098149 MGI:3819026 MGI:5522580 NCBI chr 2:230,538,252...230,871,077
Ensembl chr 2:230,541,558...230,871,368 		JBrowse link
G Ccn2 cellular communication network factor 2 acts_upstream_of_or_within ISO (MGI:3050271|PMID:15305294) RGD PMID:15305294 MGI:3050271 NCBI chr 1:20,802,199...20,805,315
Ensembl chr 1:20,802,199...20,805,734 		JBrowse link
G Ccn3 cellular communication network factor 3 involved_in ISO
ISS
IMP		 (PMID:21871891)
GO_REF:0000024		 RGD
UniProt		 PMID:21871891 PMID:21871891 GO_REF:0000024, RGD:10400852 NCBI chr 7:86,094,000...86,101,022
Ensembl chr 7:86,094,000...86,101,019 		JBrowse link
G Chrdl2 chordin-like 2 acts_upstream_of_or_within ISO (MGI:2683044|PMID:14660436) RGD PMID:14660436 MGI:2683044 NCBI chr 1:154,343,201...154,370,651
Ensembl chr 1:154,343,201...154,370,640 		JBrowse link
G Col11a2 collagen type XI alpha 2 chain acts_upstream_of_or_within ISO MGI:2154689 (MGI:2151300|PMID:11668593) RGD PMID:11668593 MGI:2151300 NCBI chr20:4,786,932...4,816,598
Ensembl chr20:4,786,929...4,815,985 		JBrowse link
G Col2a1 collagen type II alpha 1 chain involved_in
acts_upstream_of_or_within		 IEP
IEA
ISO		 GO_REF:0000107
MGI:2152978 (MGI:3697977|PMID:11680679), (MGI:77563|PMID:7590256)
(MGI:86312|PMID:9119111)		 Ensembl
RGD		 PMID:7590256 PMID:9119111 PMID:11680679 PMID:21627568 GO_REF:0000107 MGI:3697977 MGI:77563 MGI:86312, RGD:5134342 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in ISO MGI:1857431 (MGI:6405577|PMID:31655293) RGD PMID:31655293 MGI:6405577 NCBI chr 9:47,374,611...47,410,547
Ensembl chr 9:47,374,593...47,410,547 		JBrowse link
G Col9a1 collagen type IX alpha 1 chain IEP RGD PMID:8992886 RGD:1600950 NCBI chr 9:26,585,034...26,668,222
Ensembl chr 9:26,585,034...26,668,213 		JBrowse link
G Creb3l2 cAMP responsive element binding protein 3-like 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(MGI:4438315|PMID:19767744)		 UniProt
Ensembl
RGD		 PMID:19767744 GO_REF:0000024 GO_REF:0000107 MGI:4438315 NCBI chr 4:65,907,570...66,112,078
Ensembl chr 4:65,907,655...66,023,763 		JBrowse link
G Cst5 cystatin D acts_upstream_of_or_within ISO (MGI:2681375|PMID:13679380) RGD PMID:13679380 MGI:2681375 NCBI chr 3:137,573,194...137,577,754
Ensembl chr 3:137,573,194...137,577,754 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of
involved_in		 ISO
IEA		 MGI:2148591|MGI:2148594|MGI:2446084|MGI:2450929 (MGI:3578464|PMID:15866163), (MGI:3701031|PMID:16818445)
GO_REF:0000107		 RGD
Ensembl		 PMID:15866163 PMID:16818445 GO_REF:0000107 MGI:3578464 MGI:3701031 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Cytl1 cytokine like 1 acts_upstream_of_or_within ISO (MGI:3758399|PMID:17644814) RGD PMID:17644814 MGI:3758399 NCBI chr14:73,053,876...73,058,886
Ensembl chr14:73,053,877...73,058,886 		JBrowse link
G Dll4 delta like canonical Notch ligand 4 IEP RGD PMID:26872979 RGD:11521858 NCBI chr 3:106,317,114...106,327,004
Ensembl chr 3:106,316,986...106,326,931 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (MGI:4431165|PMID:20080592), (MGI:4834113|PMID:20404326), (MGI:5487694|PMID:23458899), (MGI:6407539|PMID:28768899) RGD PMID:20080592 PMID:20404326 PMID:23458899 PMID:28768899 MGI:4431165 MGI:4834113 MGI:5487694 MGI:6407539 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Ext2 exostosin glycosyltransferase 2 acts_upstream_of_or_within ISO MGI:3608690 (MGI:3608483|PMID:16236767) RGD PMID:16236767 MGI:3608483 NCBI chr 3:79,665,414...79,798,077
Ensembl chr 3:79,665,415...79,798,059 		JBrowse link
G Fgf18 fibroblast growth factor 18 acts_upstream_of ISO MGI:95524 (MGI:3584218|PMID:15781473) RGD PMID:15781473 MGI:3584218 NCBI chr10:17,706,011...17,737,702
Ensembl chr10:17,706,174...17,736,818 		JBrowse link
G Fgf9 fibroblast growth factor 9 acts_upstream_of_or_within ISO MGI:2135961|MGI:95522 (MGI:3716021|PMID:17544391) RGD PMID:17544391 MGI:3716021 NCBI chr15:32,208,993...32,254,952
Ensembl chr15:32,210,074...32,253,309 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO MGI:104723 (MGI:3716021|PMID:17544391) RGD PMID:17544391 MGI:3716021 NCBI chr16:66,491,930...66,547,161
Ensembl chr16:66,494,042...66,547,350 		JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3512699|PMID:15509771)
GO_REF:0000107		 RGD
Ensembl		 PMID:15509771 GO_REF:0000107 MGI:3512699 NCBI chr 6:24,297,898...24,319,219
Ensembl chr 6:24,300,956...24,320,034 		JBrowse link
G Gdf5 growth differentiation factor 5 acts_upstream_of ISO (MGI:1329266|PMID:9885252) RGD PMID:9885252 MGI:1329266 NCBI chr 3:144,454,316...144,458,508
Ensembl chr 3:144,454,338...144,458,612 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:1915509 (MGI:5473722|PMID:23333501) RGD PMID:23333501 MGI:5473722 NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of ISO MGI:96533 (MGI:3608261|PMID:16284117) RGD PMID:16284117 MGI:3608261 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Gpld1 glycosylphosphatidylinositol specific phospholipase D1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3583476|PMID:15946906)		 UniProt
RGD		 PMID:15946906 GO_REF:0000024 MGI:3583476 NCBI chr17:40,084,427...40,132,035
Ensembl chr17:40,084,617...40,126,939 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 NOT|involved_in ISS
ISO		 GO_REF:0000024
(MGI:5285816|PMID:17093926)		 UniProt
RGD		 PMID:17093926 GO_REF:0000024 MGI:5285816 NCBI chr 5:165,522,138...165,523,684
Ensembl chr 5:165,522,234...165,523,001 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:2386679 (MGI:3039988|PMID:15073147)
GO_REF:0000107		 RGD
Ensembl		 PMID:15073147 GO_REF:0000107 MGI:3039988 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO
ISS		 (PMID:21484705)
GO_REF:0000024		 RGD
UniProt		 PMID:21484705 GO_REF:0000024 NCBI chr 7:55,877,145...55,998,813
Ensembl chr 7:55,880,112...55,994,784 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of ISO MGI:96203 (MGI:3043491|PMID:14668414) RGD PMID:14668414 MGI:3043491 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of ISO MGI:96172 (MGI:3043491|PMID:14668414) RGD PMID:14668414 MGI:3043491 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Hspg2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO MGI:1934891 (MGI:1930356|PMID:10545953) RGD PMID:10545953 MGI:1930356 NCBI chr 5:149,677,437...149,778,594
Ensembl chr 5:149,677,476...149,778,594 		JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO MGI:95728 (MGI:5473722|PMID:23333501) RGD PMID:23333501 MGI:5473722 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:153,145,795...153,240,024 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of
acts_upstream_of_or_within		 ISO MGI:1934258 (MGI:3608261|PMID:16284117)
(MGI:3583389|PMID:15951842)		 RGD PMID:15951842 PMID:16284117 MGI:3583389 MGI:3608261 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Ltbp3 latent transforming growth factor beta binding protein 3 acts_upstream_of ISO MGI:2180017 (MGI:2178869|PMID:11790802) RGD PMID:11790802 MGI:2178869 NCBI chr 1:203,029,412...203,045,975
Ensembl chr 1:203,029,877...203,045,975 		JBrowse link
G Mapk14 mitogen activated protein kinase 14 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(MGI:3758399|PMID:17644814)
(MGI:5487758|PMID:17202865)		 Ensembl
RGD		 PMID:17202865 PMID:17644814 GO_REF:0000107 MGI:3758399 MGI:5487758 NCBI chr20:6,749,646...6,810,590
Ensembl chr20:6,749,670...6,810,589 		JBrowse link
G Matn1 matrilin 1 acts_upstream_of_or_within ISO MGI:2153042|MGI:3663272 (MGI:3655339|PMID:16877353) RGD PMID:16877353 MGI:3655339 NCBI chr 5:143,117,198...143,127,140
Ensembl chr 5:143,117,504...143,127,059 		JBrowse link
G Mef2c myocyte enhancer factor 2C acts_upstream_of_or_within ISO MGI:99533 (MGI:3701381|PMID:17336904) RGD PMID:17336904 MGI:3701381 NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880 		JBrowse link
G Mef2d myocyte enhancer factor 2D involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:99458 (MGI:3701381|PMID:17336904)		 Ensembl
RGD		 PMID:17336904 GO_REF:0000107 MGI:3701381 NCBI chr 2:173,606,054...173,635,620
Ensembl chr 2:173,606,490...173,634,457 		JBrowse link
G Mustn1 musculoskeletal, embryonic nuclear protein 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:6,072,908...6,075,161
Ensembl chr16:6,072,833...6,075,161 		JBrowse link
G Nfib nuclear factor I/B involved_in ISS
ISO		 GO_REF:0000024
(MGI:5284771|PMID:17904922)		 UniProt
RGD		 PMID:17904922 GO_REF:0000024 MGI:5284771 NCBI chr 5:96,759,208...96,974,001
Ensembl chr 5:96,764,653...96,975,479 		JBrowse link
G Npr2 natriuretic peptide receptor 2 involved_in ISO
IEA		 MGI:3774275 (MGI:3770504|PMID:17728275)
GO_REF:0000107		 RGD
Ensembl		 PMID:17728275 GO_REF:0000107 MGI:3770504 NCBI chr 5:57,883,171...57,901,590
Ensembl chr 5:57,883,171...57,901,580 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO UniProtKB:Q91ZD1 (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817 		JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in ISO UniProtKB:Q9WVG7 (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 7:66,487,841...66,495,003
Ensembl chr 7:66,487,839...66,495,224 		JBrowse link
G Prkca protein kinase C, alpha acts_upstream_of_or_within ISO (MGI:3758399|PMID:17644814) RGD PMID:17644814 MGI:3758399 NCBI chr10:92,889,390...93,288,013
Ensembl chr10:92,894,012...93,288,012 		JBrowse link
G Pth1r parathyroid hormone 1 receptor acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:2154519|MGI:99829 (MGI:3620436|PMID:16476422), (MGI:3624906|PMID:9832460)
GO_REF:0000107		 RGD
Ensembl		 PMID:9832460 PMID:16476422 GO_REF:0000107 MGI:3620436 MGI:3624906 NCBI chr 8:110,693,910...110,725,458
Ensembl chr 8:110,697,485...110,719,729 		JBrowse link
G Pthlh parathyroid hormone-like hormone acts_upstream_of ISO MGI:2154515 (MGI:1352921|PMID:8895385) RGD PMID:8895385 MGI:1352921 NCBI chr 4:180,188,792...180,199,847
Ensembl chr 4:180,188,792...180,199,847 		JBrowse link
G Rb1 RB transcriptional corepressor 1 involved_in ISO
IEA		 (MGI:3807134|PMID:18638549)
GO_REF:0000107		 RGD
Ensembl		 PMID:18638549 GO_REF:0000107 MGI:3807134 NCBI chr15:48,371,295...48,502,473
Ensembl chr15:48,371,296...48,502,302 		JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 acts_upstream_of_or_within ISO MGI:2183225 (MGI:3037488|PMID:14745966) RGD PMID:14745966 MGI:3037488 NCBI chr17:11,972,830...12,148,152
Ensembl chr17:11,972,830...12,148,152 		JBrowse link
G Runx1 RUNX family transcription factor 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:31,839,880...32,074,427
Ensembl chr11:31,843,764...32,074,542 		JBrowse link
G Runx2 RUNX family transcription factor 2 acts_upstream_of_or_within ISO MGI:102672|MGI:2176466|MGI:97801 (MGI:3620436|PMID:16476422), (MGI:5462316|PMID:22916278)
MGI:2176465 (MGI:1332911|PMID:10072783)		 RGD PMID:10072783 PMID:16476422 PMID:22916278 MGI:1332911 MGI:3620436 MGI:5462316 NCBI chr 9:16,167,504...16,492,826
Ensembl chr 9:16,167,482...16,492,167 		JBrowse link
G Runx3 RUNX family transcription factor 3 acts_upstream_of_or_within
involved_in		 ISO
IBA		 MGI:99829 (MGI:5462316|PMID:22916278)
PMID:21873635		 RGD PMID:22916278 PMID:21873635 MGI:5462316, RGD:13792537 NCBI chr 5:147,360,587...147,419,161
Ensembl chr 5:147,360,994...147,419,156 		JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (MGI:4418577|PMID:20059955) RGD PMID:20059955 MGI:4418577 NCBI chr 7:108,176,608...108,178,626
Ensembl chr 7:108,176,608...108,178,626 		JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within ISO (MGI:5462316|PMID:22916278) RGD PMID:22916278 MGI:5462316 NCBI chr 2:151,217,049...151,227,180
Ensembl chr 2:151,217,552...151,227,143 		JBrowse link
G Six2 SIX homeobox 2 acts_upstream_of_or_within ISO MGI:3691857 (MGI:4822095|PMID:20515681) RGD PMID:20515681 MGI:4822095 NCBI chr 6:8,974,859...8,981,345
Ensembl chr 6:8,967,157...8,981,193 		JBrowse link
G Slc26a2 solute carrier family 26 member 2 involved_in ISS
ISO		 GO_REF:0000024
(MGI:6708267|PMID:24302720)		 UniProt
RGD		 PMID:24302720 GO_REF:0000024 MGI:6708267 NCBI chr18:54,648,276...54,666,627
Ensembl chr18:54,652,951...54,666,626 		JBrowse link
G Slc39a14 solute carrier family 39 member 14 acts_upstream_of ISO (MGI:4950776|PMID:21445361) RGD PMID:21445361 MGI:4950776 NCBI chr15:45,376,806...45,423,549
Ensembl chr15:45,376,917...45,423,524 		JBrowse link
G Snx19 sorting nexin 19 involved_in
acts_upstream_of_or_within		 ISO (PMID:19877062)
(MGI:5605298|PMID:19877062)		 RGD PMID:19877062 MGI:5605298 NCBI chr 8:28,829,881...28,867,600
Ensembl chr 8:28,829,886...28,867,061 		JBrowse link
G Sox5 SRY-box transcription factor 5 involved_in ISS
ISO		 GO_REF:0000024
(MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235)		 UniProt
RGD		 PMID:11702786 PMID:14993235 GO_REF:0000024 MGI:2446758 MGI:3037234 NCBI chr 4:176,781,375...177,736,833
Ensembl chr 4:176,785,892...177,736,852 		JBrowse link
G Sox6 SRY-box transcription factor 6 involved_in ISS
ISO		 GO_REF:0000024
(MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235)		 UniProt
RGD		 PMID:11702786 PMID:14993235 GO_REF:0000024 MGI:2446758 MGI:3037234 NCBI chr 1:169,723,306...170,334,846
Ensembl chr 1:169,729,194...170,277,386 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 IBA
ISO
ISS		 PMID:21873635
MGI:2385468 (MGI:2389523|PMID:12414734)
(MGI:3044231|PMID:15132997), (MGI:6414736|PMID:29644115), (MGI:6414737|PMID:32103177), (MGI:86312|PMID:9119111)
MGI:2158693 (MGI:2135696|PMID:11371614)
GO_REF:0000024		 RGD
UniProt		 PMID:9119111 PMID:11371614 PMID:12414734 PMID:15132997 PMID:29644115 More... GO_REF:0000024 MGI:2135696 MGI:2389523 MGI:3044231 MGI:6414736 MGI:6414737 MGI:86312, RGD:13792537 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:15040835)		 UniProt
RGD		 PMID:15040835 GO_REF:0000024 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847 		JBrowse link
G Tgfbi transforming growth factor, beta induced IEP RGD PMID:16546826 RGD:1599388 NCBI chr17:7,955,603...7,984,903
Ensembl chr17:7,955,603...7,985,240 		JBrowse link
G Trps1 transcriptional repressor GATA binding 1 acts_upstream_of_or_within ISO MGI:107191|MGI:95688 (MGI:3819026|PMID:18363966) RGD PMID:18363966 MGI:3819026 NCBI chr 7:81,916,668...82,142,733
Ensembl chr 7:81,921,601...82,141,905 		JBrowse link
G Twsg1 twisted gastrulation BMP signaling modulator 1 acts_upstream_of_or_within ISO MGI:3044357 (MGI:3043486|PMID:14681194) RGD PMID:14681194 MGI:3043486 NCBI chr 9:105,533,116...105,567,460
Ensembl chr 9:105,533,136...105,567,479 		JBrowse link
G Wnt10b Wnt family member 10B involved_in ISO (PMID:15135146) RGD PMID:15135146 NCBI chr 7:129,922,088...129,927,892
Ensembl chr 7:129,922,088...129,927,892 		JBrowse link
G Wnt2b Wnt family member 2B involved_in ISO (PMID:15135146) RGD PMID:15135146 NCBI chr 2:192,454,226...192,468,599
Ensembl chr 2:192,453,824...192,470,308 		JBrowse link
G Wnt5b Wnt family member 5B involved_in ISO (PMID:15135146) RGD PMID:15135146 NCBI chr 4:152,609,566...152,733,790
Ensembl chr 4:152,609,569...152,733,407 		JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (PMID:17202865) RGD PMID:17202865 NCBI chr 4:123,863,108...123,908,981
Ensembl chr 4:123,863,108...123,908,981 		JBrowse link
G Wnt9a Wnt family member 9A acts_upstream_of ISO MGI:3701350|MGI:88276 (MGI:3701031|PMID:16818445) RGD PMID:16818445 MGI:3701031 NCBI chr10:44,094,140...44,121,134
Ensembl chr10:44,094,140...44,121,133 		JBrowse link
chondrocyte differentiation involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin2 axin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3579503 (MGI:4818263|PMID:19623616)		 Ensembl
RGD		 PMID:19623616 GO_REF:0000107 MGI:4818263 NCBI chr10:93,893,830...93,927,042
Ensembl chr10:93,899,245...93,926,231 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (MGI:5698232|PMID:25639508) RGD PMID:25639508 MGI:5698232 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Scube2 signal peptide, CUB domain and EGF like domain containing 2 acts_upstream_of_or_within ISO MGI:5698367 (MGI:5698232|PMID:25639508) RGD PMID:25639508 MGI:5698232 NCBI chr 1:163,831,876...163,899,925
Ensembl chr 1:163,832,015...163,899,393 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO
ISS		 (PMID:20676705)
GO_REF:0000024		 RGD
UniProt		 PMID:20676705 GO_REF:0000024 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Trip11 thyroid hormone receptor interactor 11 acts_upstream_of_or_within ISO MGI:4829605 (MGI:4822550|PMID:20089971) RGD PMID:20089971 MGI:4822550 NCBI chr 6:120,995,242...121,067,693
Ensembl chr 6:120,998,733...121,067,781 		JBrowse link
chondrocyte hypertrophy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (MGI:5528913|PMID:23958822) RGD PMID:23958822 MGI:5528913 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Mex3c mex-3 RNA binding family member C acts_upstream_of_or_within ISO MGI:3764947 (MGI:5446032|PMID:22357625) RGD PMID:22357625 MGI:5446032 NCBI chr18:67,167,600...67,188,595
Ensembl chr18:67,166,718...67,188,595 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISS
ISO		 GO_REF:0000024
(MGI:4950303|PMID:21367821)		 UniProt
RGD		 PMID:21367821 GO_REF:0000024 MGI:4950303 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
coronal suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:3603464 (MGI:3848571|PMID:19389359) RGD PMID:19389359 MGI:3848571 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
cranial suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(MGI:1203304|PMID:9477322)		 Ensembl
RGD		 PMID:9477322 GO_REF:0000107 MGI:1203304 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Fgf4 fibroblast growth factor 4 acts_upstream_of_or_within ISO (MGI:1203304|PMID:9477322) RGD PMID:9477322 MGI:1203304 NCBI chr 1:200,023,937...200,027,793
Ensembl chr 1:200,024,056...200,025,466 		JBrowse link
G Igf1 insulin-like growth factor 1 IEP RGD PMID:10597685 RGD:12910129 NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296 		JBrowse link
G Insig1 insulin induced gene 1 acts_upstream_of_or_within ISO MGI:1920249 (MGI:3689278|PMID:16955138) RGD PMID:16955138 MGI:3689278 NCBI chr 4:7,315,494...7,323,972
Ensembl chr 4:7,315,495...7,323,952 		JBrowse link
G Insig2 insulin induced gene 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:1916289 (MGI:3689278|PMID:16955138)
GO_REF:0000107		 RGD
Ensembl		 PMID:16955138 GO_REF:0000107 MGI:3689278 NCBI chr13:32,472,390...32,500,139
Ensembl chr13:32,473,742...32,494,923 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within
involved_in		 ISO MGI:1857265|MGI:3038818 (MGI:2387743|PMID:12221714), (MGI:3042355|PMID:15030764)
(MGI:3623529|PMID:16502419)		 RGD PMID:12221714 PMID:15030764 PMID:16502419 MGI:2387743 MGI:3042355 MGI:3623529 NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653 		JBrowse link
craniofacial suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxn3 forkhead box N3 acts_upstream_of_or_within ISO (MGI:4835344|PMID:20691664) RGD PMID:20691664 MGI:4835344 NCBI chr 6:118,462,018...118,842,442
Ensembl chr 6:118,466,025...118,842,401 		JBrowse link
G Frem1 Fras1 related extracellular matrix 1 involved_in ISO (PMID:21931569) RGD PMID:21931569 NCBI chr 5:97,321,266...97,469,523
Ensembl chr 5:97,322,538...97,469,543 		JBrowse link
G Megf8 multiple EGF-like-domains 8 involved_in IEA
ISO		 GO_REF:0000107
(PMID:23063620)		 Ensembl
RGD		 PMID:23063620 GO_REF:0000107 NCBI chr 1:80,902,236...80,951,614
Ensembl chr 1:80,902,574...80,951,613 		JBrowse link
G Mmp14 matrix metallopeptidase 14 acts_upstream_of_or_within ISO MGI:1276107 (MGI:3771253|PMID:18022611) RGD PMID:18022611 MGI:3771253 NCBI chr15:27,887,795...27,897,020
Ensembl chr15:27,887,727...27,899,864 		JBrowse link
G Mmp16 matrix metallopeptidase 16 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:101900 (MGI:3771253|PMID:18022611)		 Ensembl
RGD		 PMID:18022611 GO_REF:0000107 MGI:3771253 NCBI chr 5:31,312,280...31,556,276
Ensembl chr 5:31,312,280...31,548,388 		JBrowse link
G Neurog1 neurogenin 1 involved_in ISO UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,362,878...8,364,397
Ensembl chr17:8,362,821...8,364,571 		JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in ISO (PMID:17503333) RGD PMID:17503333 NCBI chr 9:35,943,522...35,967,367
Ensembl chr 9:35,944,085...35,966,927 		JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,433,406...8,436,541
Ensembl chr17:8,431,635...8,436,592 		JBrowse link
G Tmem107 transmembrane protein 107 acts_upstream_of_or_within ISO MGI:5007367 (MGI:6115041|PMID:28954202) RGD PMID:28954202 MGI:6115041 NCBI chr10:53,772,153...53,774,685
Ensembl chr10:53,771,784...53,774,676 		JBrowse link
deltoid tuberosity development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:4418577|PMID:20059955)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:20059955 GO_REF:0000024 GO_REF:0000107 MGI:4418577 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Pitx2 paired-like homeodomain 2 involved_in ISO (PMID:18312615)
(MGI:3794216|PMID:18312615)		 RGD PMID:18312615 MGI:3794216 NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293 		JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (MGI:3715390|PMID:17567668), (MGI:4418577|PMID:20059955) RGD PMID:17567668 PMID:20059955 MGI:3715390 MGI:4418577 NCBI chr 7:108,176,608...108,178,626
Ensembl chr 7:108,176,608...108,178,626 		JBrowse link
embryonic cranial skeleton morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857137 (MGI:1095762|PMID:9268572)		 Ensembl
RGD		 PMID:9268572 GO_REF:0000107 MGI:1095762 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Dlx2 distal-less homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857828 (MGI:76977|PMID:7590232)		 Ensembl
RGD		 PMID:7590232 GO_REF:0000107 MGI:76977 NCBI chr 3:56,370,238...56,373,581
Ensembl chr 3:56,370,483...56,373,597 		JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 involved_in ISO
ISS		 (PMID:24360810)
GO_REF:0000024		 RGD
UniProt		 PMID:24360810 GO_REF:0000024 NCBI chr10:104,549,038...104,559,032
Ensembl chr10:104,549,038...104,559,057 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 involved_in ISO (PMID:7874170), (PMID:7987400) RGD PMID:7874170 PMID:7987400 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1857865 (MGI:86990|PMID:9106663) RGD PMID:9106663 MGI:86990 NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737 		JBrowse link
G Gas1 growth arrest-specific 1 acts_upstream_of_or_within ISO MGI:2388397|MGI:98297 (MGI:3713422|PMID:17525797) RGD PMID:17525797 MGI:3713422 NCBI chr17:4,482,168...4,485,153 JBrowse link
G Gnas GNAS complex locus acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:3043361 (MGI:3619837|PMID:15797856)
GO_REF:0000107		 RGD
Ensembl		 PMID:15797856 GO_REF:0000107 MGI:3619837 NCBI chr 3:163,071,003...163,136,350
Ensembl chr 3:163,071,417...163,127,262
Ensembl chr 3:163,071,417...163,127,262 		JBrowse link
G Grhl2 grainyhead-like transcription factor 2 acts_upstream_of_or_within ISO MGI:4942413 (MGI:4943100|PMID:21377456) RGD PMID:21377456 MGI:4943100 NCBI chr 7:68,400,287...68,530,269
Ensembl chr 7:68,400,477...68,530,258 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO MGI:4458412 (MGI:5505384|PMID:23469164) RGD PMID:23469164 MGI:5505384 NCBI chr10:14,032,665...14,121,682
Ensembl chr10:14,032,648...14,120,433 		JBrowse link
G Irx5 iroquois homeobox 5 involved_in ISO (PMID:22581230) RGD PMID:22581230 NCBI chr19:14,639,052...14,643,911
Ensembl chr19:14,624,225...14,642,318 		JBrowse link
G Mmp14 matrix metallopeptidase 14 acts_upstream_of_or_within ISO MGI:1276107 (MGI:3771253|PMID:18022611) RGD PMID:18022611 MGI:3771253 NCBI chr15:27,887,795...27,897,020
Ensembl chr15:27,887,727...27,899,864 		JBrowse link
G Mmp16 matrix metallopeptidase 16 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:101900 (MGI:3771253|PMID:18022611)		 Ensembl
RGD		 PMID:18022611 GO_REF:0000107 MGI:3771253 NCBI chr 5:31,312,280...31,556,276
Ensembl chr 5:31,312,280...31,548,388 		JBrowse link
G Nipbl NIPBL, cohesin loading factor acts_upstream_of_or_within ISO MGI:4332250 (MGI:4367301|PMID:19763162) RGD PMID:19763162 MGI:4367301 NCBI chr 2:57,399,443...57,586,770
Ensembl chr 2:57,399,445...57,565,899 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO MGI:2158732 (MGI:2155575|PMID:11311163) RGD PMID:11311163 MGI:2155575 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Pax5 paired box 5 acts_upstream_of_or_within ISO MGI:2386577 (MGI:5476374|PMID:23349049) RGD PMID:23349049 MGI:5476374 NCBI chr 5:58,763,334...58,945,719
Ensembl chr 5:58,765,036...58,944,326 		JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in IBA
ISS
ISO
IEA		 PMID:21873635
GO_REF:0000024
(MGI:894516|PMID:9226440)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:9226440 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:894516, RGD:13792537 NCBI chr14:33,005,838...33,054,347
Ensembl chr14:33,005,839...33,054,335 		JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within ISO MGI:1857640|MGI:98218 (MGI:1306737|PMID:9729491), (MGI:73363|PMID:7758948) RGD PMID:7758948 PMID:9729491 MGI:1306737 MGI:73363 NCBI chr13:75,600,777...75,671,896
Ensembl chr13:75,601,706...75,670,866 		JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within ISO MGI:97712 (MGI:1306737|PMID:9729491) RGD PMID:9729491 MGI:1306737 NCBI chr 3:14,132,574...14,168,533
Ensembl chr 3:14,094,004...14,168,535 		JBrowse link
G Runx2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:104685|MGI:98872 (MGI:3042355|PMID:15030764)		 Ensembl
RGD		 PMID:15030764 GO_REF:0000107 MGI:3042355 NCBI chr 9:16,167,504...16,492,826
Ensembl chr 9:16,167,482...16,492,167 		JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase acts_upstream_of_or_within ISO MGI:4437211 (MGI:4431136|PMID:20133625) RGD PMID:20133625 MGI:4431136 NCBI chr 8:110,511,808...110,597,475
Ensembl chr 8:110,511,772...110,597,489 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO MGI:106034 (MGI:4822095|PMID:20515681) RGD PMID:20515681 MGI:4822095 NCBI chr 6:91,746,739...91,751,975
Ensembl chr 6:91,746,739...91,751,975 		JBrowse link
G Six2 SIX homeobox 2 acts_upstream_of_or_within ISO MGI:3691857 (MGI:4822095|PMID:20515681) RGD PMID:20515681 MGI:4822095 NCBI chr 6:8,974,859...8,981,345
Ensembl chr 6:8,967,157...8,981,193 		JBrowse link
G Six4 SIX homeobox 4 acts_upstream_of_or_within ISO MGI:102780 (MGI:4822095|PMID:20515681) RGD PMID:20515681 MGI:4822095 NCBI chr 6:91,802,328...91,816,002
Ensembl chr 6:91,802,329...91,815,992 		JBrowse link
G Slc39a1 solute carrier family 39 member 1 acts_upstream_of_or_within ISO MGI:2147269|MGI:3625131 (MGI:3624433|PMID:16652366) RGD PMID:16652366 MGI:3624433 NCBI chr 2:175,703,413...175,709,063
Ensembl chr 2:175,703,441...175,709,058 		JBrowse link
G Slc39a3 solute carrier family 39 member 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:1353474 (MGI:3624433|PMID:16652366)
GO_REF:0000107		 RGD
Ensembl		 PMID:16652366 GO_REF:0000107 MGI:3624433 NCBI chr 7:8,676,845...8,682,846
Ensembl chr 7:8,676,759...8,685,149 		JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within ISO MGI:1201674 (MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:3618021 NCBI chr18:69,849,884...69,918,926
Ensembl chr18:69,850,377...69,912,323 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO MGI:108051 (MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:3618021 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:2179191 (MGI:3050165|PMID:15190012)		 UniProt
RGD		 PMID:15190012 GO_REF:0000024 MGI:3050165 NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
G Tbx15 T-box transcription factor 15 acts_upstream_of_or_within ISO MGI:1856015 (MGI:3604843|PMID:15728667) RGD PMID:15728667 MGI:3604843 NCBI chr 2:186,576,650...186,687,748
Ensembl chr 2:186,576,676...186,687,663 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
(MGI:80519|PMID:8622766)
MGI:1888387 (MGI:80520|PMID:8622765)		 UniProt
RGD		 PMID:8622765 PMID:8622766 GO_REF:0000024 MGI:80519 MGI:80520 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:2680164 (MGI:3701721|PMID:16806156)
GO_REF:0000107		 RGD
Ensembl		 PMID:16806156 GO_REF:0000107 MGI:3701721 NCBI chr 5:61,653,773...61,710,777
Ensembl chr 5:61,653,233...61,710,777 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 involved_in ISO
IEA		 (MGI:2678274|PMID:12975342)
GO_REF:0000107		 RGD
Ensembl		 PMID:12975342 GO_REF:0000107 MGI:2678274 NCBI chr 8:115,794,537...115,883,615
Ensembl chr 8:115,794,537...115,883,228 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:8988166), (PMID:8988167)
(MGI:1100098|PMID:8988167)
MGI:99829 (MGI:3042355|PMID:15030764)		 RGD PMID:8988166 PMID:8988167 PMID:15030764 MGI:1100098 MGI:3042355 NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653 		JBrowse link
G Twist2 twist family bHLH transcription factor 2 acts_upstream_of_or_within ISO MGI:99829 (MGI:3042355|PMID:15030764) RGD PMID:15030764 MGI:3042355 NCBI chr 9:92,374,740...92,419,222
Ensembl chr 9:92,374,574...92,419,222 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO MGI:5315747 (MGI:5314316|PMID:22228095) RGD PMID:22228095 MGI:5314316 NCBI chr14:43,042,474...43,106,337
Ensembl chr14:43,042,478...43,106,288 		JBrowse link
G Wnt9b Wnt family member 9B acts_upstream_of_or_within ISO MGI:1856821|MGI:3526437 (MGI:3588895|PMID:16054034), (MGI:3696935|PMID:16998816) RGD PMID:16054034 PMID:16998816 MGI:3588895 MGI:3696935 NCBI chr10:88,635,330...88,657,035
Ensembl chr10:88,635,331...88,657,035 		JBrowse link
embryonic neurocranium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO MGI:1917550 (MGI:5796907|PMID:27395007) RGD PMID:27395007 MGI:5796907 NCBI chr 1:244,584,477...244,590,578
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Fuz fuzzy planar cell polarity protein acts_upstream_of_or_within ISO MGI:3531090|MGI:99604 (MGI:5796907|PMID:27395007) RGD PMID:27395007 MGI:5796907 NCBI chr 1:95,379,542...95,384,532
Ensembl chr 1:95,379,587...95,384,530 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:1856276 (MGI:5796907|PMID:27395007) RGD PMID:27395007 MGI:5796907 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:81,255,814...81,258,587
Ensembl chr 4:81,255,883...81,258,504 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO MGI:4839485 (MGI:4839544|PMID:20589884) RGD PMID:20589884 MGI:4839544 NCBI chr  X:66,404,807...66,427,775
Ensembl chr  X:66,404,760...66,428,387 		JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like involved_in ISO (MGI:5468075|PMID:23267094) RGD PMID:23267094 MGI:5468075 NCBI chr 1:40,443,926...40,632,911
Ensembl chr 1:40,444,008...40,632,905 		JBrowse link
G Ndst1 N-deacetylase and N-sulfotransferase 1 acts_upstream_of_or_within ISO MGI:3589383 (MGI:3588476|PMID:16020517) RGD PMID:16020517 MGI:3588476 NCBI chr18:54,136,887...54,199,545
Ensembl chr18:54,140,779...54,178,191 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 IDA RGD PMID:11002343 RGD:1579866 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405 		JBrowse link
G Tgfb3 transforming growth factor, beta 3 IDA RGD PMID:11002343 RGD:1579866 NCBI chr 6:105,704,058...105,726,661
Ensembl chr 6:105,704,236...105,726,564 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO MGI:2388066 (MGI:3841503|PMID:19286674) RGD PMID:19286674 MGI:3841503 NCBI chr 4:161,590,478...161,632,244
Ensembl chr 4:161,590,479...161,632,149 		JBrowse link
embryonic skeletal joint development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO MGI:2682061 (MGI:4946896|PMID:21185280) RGD PMID:21185280 MGI:4946896 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO MGI:1934258 (MGI:3695832|PMID:17191253) RGD PMID:17191253 MGI:3695832 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO UniProtKB:Q91ZD1 (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817 		JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in ISO UniProtKB:Q9WVG7 (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 7:66,487,841...66,495,003
Ensembl chr 7:66,487,839...66,495,224 		JBrowse link
G Slc2a10 solute carrier family 2 member 10 acts_upstream_of_or_within ISO (PMID:18565096) RGD PMID:18565096 NCBI chr 3:154,240,395...154,252,690
Ensembl chr 3:154,240,391...154,252,690 		JBrowse link
embryonic skeletal joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 acts_upstream_of_or_within ISO MGI:1856035|MGI:1856036 RGD MGI:48782 NCBI chr10:15,163,477...15,215,615
Ensembl chr10:15,163,684...15,215,615 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:103302|MGI:1857137 (MGI:1270933|PMID:9664686)		 Ensembl
RGD		 PMID:9664686 GO_REF:0000107 MGI:1270933 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO MGI:1934010|MGI:88180 (MGI:1270933|PMID:9664686) RGD PMID:9664686 MGI:1270933 NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788 		JBrowse link
G Col2a1 collagen type II alpha 1 chain involved_in ISO
IEA		 (PMID:16752401)
GO_REF:0000107		 RGD
Ensembl		 PMID:16752401 GO_REF:0000107 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO MGI:96193|MGI:96203 (MGI:4867119|PMID:20978074) RGD PMID:20978074 MGI:4867119 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxc11 homeobox C11 acts_upstream_of_or_within ISO MGI:96172|MGI:96203 (MGI:4867119|PMID:20978074) RGD PMID:20978074 MGI:4867119 NCBI chr 7:134,091,224...134,094,738
Ensembl chr 7:134,091,552...134,094,738 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172|MGI:96193 (MGI:4867119|PMID:20978074) RGD PMID:20978074 MGI:4867119 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Hyal1 hyaluronidase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:2658730 (MGI:3836537|PMID:18772348)
GO_REF:0000107		 RGD
Ensembl		 PMID:18772348 GO_REF:0000107 MGI:3836537 NCBI chr 8:108,250,668...108,254,519
Ensembl chr 8:108,250,667...108,260,210 		JBrowse link
G Nog noggin involved_in ISO
IEA		 (PMID:16151340)
GO_REF:0000107		 RGD
Ensembl		 PMID:16151340 GO_REF:0000107 NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO UniProtKB:Q91ZD1 (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817 		JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in ISO (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 7:66,487,841...66,495,003
Ensembl chr 7:66,487,839...66,495,224 		JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:3626291 (MGI:3805084|PMID:18514492)
GO_REF:0000107		 RGD
Ensembl		 PMID:18514492 GO_REF:0000107 MGI:3805084 NCBI chr 2:151,217,049...151,227,180
Ensembl chr 2:151,217,552...151,227,143 		JBrowse link
embryonic skeletal limb joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 involved_in ISO
IEA		 UniProtKB:Q91ZD1 (MGI:4950000|PMID:21262216)
GO_REF:0000107		 RGD
Ensembl		 PMID:21262216 GO_REF:0000107 MGI:4950000 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO UniProtKB:Q91ZD1 (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817 		JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in ISO UniProtKB:Q9WVG7 (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 7:66,487,841...66,495,003
Ensembl chr 7:66,487,839...66,495,224 		JBrowse link
embryonic skeletal system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2a activin A receptor type 2A involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1861779 (MGI:71660|PMID:7885474)		 Ensembl
RGD		 PMID:7885474 GO_REF:0000107 MGI:71660 NCBI chr 3:33,204,961...33,292,673
Ensembl chr 3:33,205,523...33,289,968 		JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within ISO MGI:99161 (MGI:1932296|PMID:11290297) RGD PMID:11290297 MGI:1932296 NCBI chr17:81,332,175...81,341,625
Ensembl chr17:81,332,214...81,388,690 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO MGI:2158495 (MGI:3640733|PMID:16712836) RGD PMID:16712836 MGI:3640733 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Cdk20 cyclin-dependent kinase 20 acts_upstream_of_or_within ISO MGI:6113512 (MGI:5912686|PMID:28817564) RGD PMID:28817564 MGI:5912686 NCBI chr17:701,122...707,869
Ensembl chr17:701,124...707,826 		JBrowse link
G Col1a1 collagen type I alpha 1 chain involved_in ISO (PMID:18553566) RGD PMID:18553566 NCBI chr10:79,883,622...79,900,625
Ensembl chr10:79,883,622...79,900,624 		JBrowse link
G Deaf1 DEAF1 transcription factor involved_in ISS
ISO		 GO_REF:0000024
(MGI:3029622|PMID:14966286)		 UniProt
RGD		 PMID:14966286 GO_REF:0000024 MGI:3029622 NCBI chr 1:196,401,857...196,435,541
Ensembl chr 1:196,401,857...196,435,541 		JBrowse link
G Dlk1 delta like non-canonical Notch ligand 1 acts_upstream_of_or_within ISO (MGI:3838429|PMID:19247431) RGD PMID:19247431 MGI:3838429 NCBI chr 6:128,410,216...128,417,518
Ensembl chr 6:128,410,316...128,417,522 		JBrowse link
G Dlx1 distal-less homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857826|MGI:94902 (MGI:87771|PMID:9187081)		 Ensembl
RGD		 PMID:9187081 GO_REF:0000107 MGI:87771 NCBI chr 3:56,356,190...56,360,780
Ensembl chr 3:56,356,190...56,360,780 		JBrowse link
G Dlx2 distal-less homeobox 2 acts_upstream_of_or_within ISO MGI:1857828|MGI:94901 (MGI:87771|PMID:9187081) RGD PMID:9187081 MGI:87771 NCBI chr 3:56,370,238...56,373,581
Ensembl chr 3:56,370,483...56,373,597 		JBrowse link
G Dmrt2 doublesex and mab-3 related transcription factor 2 acts_upstream_of_or_within ISO MGI:3512139 (MGI:3613100|PMID:16387292) RGD PMID:16387292 MGI:3613100 NCBI chr 1:223,317,543...223,324,131
Ensembl chr 1:223,317,642...223,324,131 		JBrowse link
G Ednra endothelin receptor type A involved_in ISO
IEA		 MGI:103580 (MGI:5688194|PMID:19017795)
GO_REF:0000107		 RGD
Ensembl		 PMID:19017795 GO_REF:0000107 MGI:5688194 NCBI chr19:30,233,540...30,303,727
Ensembl chr19:30,233,571...30,297,049 		JBrowse link
G Etl4 enhancer trap locus 4 involved_in ISO (MGI:3614233|PMID:16204209) RGD PMID:16204209 MGI:3614233 NCBI chr17:82,841,075...83,304,868
Ensembl chr17:82,495,041...83,304,715 		JBrowse link
G Fgf9 fibroblast growth factor 9 acts_upstream_of_or_within ISO MGI:2135961 (MGI:3716021|PMID:17544391) RGD PMID:17544391 MGI:3716021 NCBI chr15:32,208,993...32,254,952
Ensembl chr15:32,210,074...32,253,309 		JBrowse link
G Gas1 growth arrest-specific 1 acts_upstream_of_or_within ISO MGI:3711070|MGI:98297 (MGI:3710451|PMID:17504941) RGD PMID:17504941 MGI:3710451 NCBI chr17:4,482,168...4,485,153 JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 involved_in ISO
IEA		 MGI:105923 (MGI:5688194|PMID:19017795)
GO_REF:0000107		 RGD
Ensembl		 PMID:19017795 GO_REF:0000107 MGI:5688194 NCBI chr16:32,917,448...32,920,791
Ensembl chr16:32,917,823...32,919,891 		JBrowse link
G Hoxa2 homeobox A2 involved_in ISO