Rdh10 (retinol dehydrogenase 10 (all-trans)) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Rdh10 (retinol dehydrogenase 10 (all-trans)) Mus musculus
Analyze
Symbol: Rdh10
Name: retinol dehydrogenase 10 (all-trans)
RGD ID: 1552069
MGI Page MGI
Description: Enables all-trans-retinol dehydrogenase (NAD+) activity. Acts upstream of or within several processes, including chordate embryonic development; embryonic forelimb morphogenesis; and respiratory system development. Located in membrane. Is expressed in several structures, including alimentary system; central nervous system; embryo mesenchyme; genitourinary system; and sensory organ. Orthologous to human RDH10 (retinol dehydrogenase 10); PARTICIPATES IN retinoic acid metabolic pathway; retinoid cycle metabolic pathway; retinol metabolic pathway; INTERACTS WITH (1->4)-beta-D-glucan; 1,2-dimethylhydrazine; 17alpha-ethynylestradiol.
Type: protein-coding
Previously known as: 4921506A21Rik; AI875664; AW549993; D1Ertd762; D1Ertd762e; m366; m366Asp; retinol dehydrogenase 10; RIKEN cDNA 4921506A21 gene
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39116,176,106 - 16,202,774 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl116,175,998 - 16,203,958 (+)EnsemblGRCm39 Ensembl
GRCm38116,105,882 - 16,132,550 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl116,105,774 - 16,133,734 (+)EnsemblGRCm38mm10GRCm38
MGSCv37116,095,963 - 16,122,631 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36116,091,096 - 16,117,764 (+)NCBIMGSCv36mm8
Celera116,041,876 - 16,068,353 (+)NCBICelera
Cytogenetic Map1A3NCBI
cM Map14.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-palmitoylglycerol  (ISO)
4,4'-diaminodiphenylmethane  (EXP,ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (EXP)
all-trans-retinal  (EXP)
all-trans-retinoic acid  (EXP,ISO)
all-trans-retinol  (EXP)
amitrole  (ISO)
ammonium chloride  (ISO)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
choline  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
cocaine  (ISO)
copper(II) chloride  (ISO)
D-glucose  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
fipronil  (ISO)
folic acid  (EXP)
geldanamycin  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
glucose  (EXP)
inulin  (EXP)
ivermectin  (ISO)
L-methionine  (EXP)
methimazole  (ISO)
methylisothiazolinone  (ISO)
N-ethyl-N-nitrosourea  (EXP)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (ISO)
NAD zwitterion  (ISO)
NAD(+)  (ISO)
Nutlin-3  (ISO)
oxaliplatin  (ISO)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
phenylmercury acetate  (ISO)
pioglitazone  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (EXP)
Soman  (ISO)
sulfadimethoxine  (ISO)
sulforaphane  (ISO)
tamoxifen  (EXP)
tetrachloromethane  (EXP,ISO)
theophylline  (ISO)
thiram  (ISO)
topotecan  (ISO)
triptonide  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal cardiac outflow tract development  (IAGP)
abnormal cardiovascular system physiology  (IAGP)
abnormal cerebral cortex morphology  (IAGP)
abnormal cranial ganglia morphology  (IAGP)
abnormal craniofacial development  (IAGP)
abnormal craniofacial morphology  (IAGP)
abnormal cricoid cartilage morphology  (IAGP)
abnormal digit development  (IAGP)
abnormal dorsal aorta morphology  (IAGP)
abnormal embryo development  (IAGP)
abnormal embryo turning  (IAGP)
abnormal embryonic tissue morphology  (IAGP)
abnormal eye development  (IAGP)
abnormal eye morphology  (IAGP)
abnormal forebrain morphology  (IAGP)
abnormal forelimb bud morphology  (IAGP)
abnormal forelimb morphology  (IAGP)
abnormal fourth pharyngeal arch morphology  (IAGP)
abnormal frontonasal prominence morphology  (IAGP)
abnormal geniculate ganglion morphology  (IAGP)
abnormal glossopharyngeal ganglion morphology  (IAGP)
abnormal heart development  (IAGP)
abnormal heart looping  (IAGP)
abnormal heart tube morphology  (IAGP)
abnormal hindbrain development  (IAGP)
abnormal hyoid bone morphology  (IAGP)
abnormal hypoglossal nerve morphology  (IAGP)
abnormal intestine morphology  (IAGP)
abnormal lateral nasal prominence morphology  (IAGP)
abnormal limb morphology  (IAGP)
abnormal liver parenchyma morphology  (IAGP)
abnormal lung development  (IAGP)
abnormal male reproductive system physiology  (IAGP)
abnormal maxillary prominence morphology  (IAGP)
abnormal medial nasal prominence morphology  (IAGP)
abnormal mesoderm development  (IAGP)
abnormal metanephros morphology  (IAGP)
abnormal midgut morphology  (IAGP)
abnormal motor neuron morphology  (IAGP)
abnormal nasal placode morphology  (IAGP)
abnormal optic vesicle formation  (IAGP)
abnormal otic vesicle development  (IAGP)
abnormal otic vesicle morphology  (IAGP)
abnormal palatal shelf elevation  (IAGP)
abnormal pharyngeal arch morphology  (IAGP)
abnormal reproductive system development  (IAGP)
abnormal retina morphology  (IAGP)
abnormal rostral-caudal body axis extension  (IAGP)
abnormal second pharyngeal arch artery morphology  (IAGP)
abnormal seminiferous tubule morphology  (IAGP)
abnormal sixth pharyngeal arch morphology  (IAGP)
abnormal spermatogenesis  (IAGP)
abnormal spermatogonia morphology  (IAGP)
abnormal spontaneous fetal mouth movement  (IAGP)
abnormal stomach morphology  (IAGP)
abnormal third pharyngeal arch morphology  (IAGP)
abnormal thyroid cartilage morphology  (IAGP)
abnormal tongue muscle morphology  (IAGP)
abnormal tongue position  (IAGP)
abnormal trigeminal ganglion morphology  (IAGP)
abnormal vagus ganglion morphology  (IAGP)
abnormal vestibulocochlear ganglion morphology  (IAGP)
abnormal vitamin A metabolism  (IAGP)
absent cornea  (IAGP)
absent fourth pharyngeal arch  (IAGP)
absent lung buds  (IAGP)
absent lungs  (IAGP)
absent nasal cavity  (IAGP)
absent nasal septum  (IAGP)
absent pancreas  (IAGP)
absent pharyngeal arches  (IAGP)
absent radius  (IAGP)
absent sixth pharyngeal arch  (IAGP)
absent sixth pharyngeal arch artery  (IAGP)
absent third pharyngeal arch  (IAGP)
absent third pharyngeal arch artery  (IAGP)
arrest of male meiosis  (IAGP)
brachydactyly  (IAGP)
cardiac edema  (IAGP)
caudal body truncation  (IAGP)
circling  (IAGP)
cleft secondary palate  (IAGP)
decreased autopod size  (IAGP)
decreased embryo size  (IAGP)
decreased palatine bone horizontal plate size  (IAGP)
decreased somite size  (IAGP)
decreased testis weight  (IAGP)
decreased tongue size  (IAGP)
decreased ventral retina size  (IAGP)
embryo tissue necrosis  (IAGP)
embryonic growth arrest  (IAGP)
embryonic growth retardation  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
facial cleft  (IAGP)
failure of heart looping  (IAGP)
frontonasal prominence hypoplasia  (IAGP)
fused pharyngeal arches  (IAGP)
hemorrhage  (IAGP)
impaired branching involved in trachea morphogenesis  (IAGP)
incomplete embryo turning  (IAGP)
lethality during fetal growth through weaning, complete penetrance  (IAGP)
liver hypoplasia  (IAGP)
midline facial cleft  (IAGP)
no abnormal phenotype detected  (IAGP)
palatal shelves fail to meet at midline  (IAGP)
pancreas hypoplasia  (IAGP)
persistent truncus arteriosus  (IAGP)
pulmonary hypoplasia  (IAGP)
reduced male fertility  (IAGP)
renal hypoplasia  (IAGP)
seminiferous tubule degeneration  (IAGP)
small forelimb buds  (IAGP)
small gonad  (IAGP)
small lens  (IAGP)
small liver  (IAGP)
small otic vesicle  (IAGP)
small stomach  (IAGP)
small testis  (IAGP)
syndactyly  (IAGP)
thin cerebral cortex  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Key enzymes of the retinoid (visual) cycle in vertebrate retina. Kiser PD, etal., Biochim Biophys Acta. 2012 Jan;1821(1):137-51. Epub 2011 Apr 5.
3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Physiological insights into all-trans-retinoic acid biosynthesis. Napoli JL Biochim Biophys Acta. 2012 Jan;1821(1):152-67. Epub 2011 May 19.
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Multiple retinol and retinal dehydrogenases catalyze all-trans-retinoic acid biosynthesis in astrocytes. Wang C, etal., J Biol Chem. 2011 Feb 25;286(8):6542-53. Epub 2010 Dec 7.
11. Cloning and characterization of a novel all-trans retinol short-chain dehydrogenase/reductase from the RPE. Wu BX, etal., Invest Ophthalmol Vis Sci 2002 Nov;43(11):3365-72.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:16141072   PMID:16141073  


Genomics

Comparative Map Data
Rdh10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39116,176,106 - 16,202,774 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl116,175,998 - 16,203,958 (+)EnsemblGRCm39 Ensembl
GRCm38116,105,882 - 16,132,550 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl116,105,774 - 16,133,734 (+)EnsemblGRCm38mm10GRCm38
MGSCv37116,095,963 - 16,122,631 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36116,091,096 - 16,117,764 (+)NCBIMGSCv36mm8
Celera116,041,876 - 16,068,353 (+)NCBICelera
Cytogenetic Map1A3NCBI
cM Map14.94NCBI
RDH10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38873,294,602 - 73,325,281 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl873,294,602 - 73,325,281 (+)EnsemblGRCh38hg38GRCh38
GRCh37874,206,837 - 74,237,516 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36874,369,891 - 74,399,347 (+)NCBINCBI36Build 36hg18NCBI36
Build 34874,369,890 - 74,399,345NCBI
Celera870,204,803 - 70,235,112 (+)NCBICelera
Cytogenetic Map8q21.11NCBI
HuRef869,697,681 - 69,728,383 (+)NCBIHuRef
CHM1_1874,259,535 - 74,290,179 (+)NCBICHM1_1
T2T-CHM13v2.0873,724,122 - 73,754,883 (+)NCBIT2T-CHM13v2.0
Rdh10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr857,969,931 - 7,998,834 (-)NCBIGRCr8
mRatBN7.253,186,671 - 3,215,572 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl53,188,445 - 3,215,572 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx55,305,902 - 5,332,978 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.056,944,767 - 6,971,843 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.056,641,260 - 6,668,810 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.052,605,265 - 2,631,905 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl52,603,505 - 2,632,030 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.052,593,904 - 2,620,243 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.452,286,373 - 2,314,154 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.152,286,372 - 2,314,154 (-)NCBI
Celera52,790,137 - 2,816,729 (-)NCBICelera
Cytogenetic Map5q11NCBI
Rdh10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554446,878,722 - 6,909,421 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554446,878,722 - 6,909,421 (-)NCBIChiLan1.0ChiLan1.0
RDH10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2789,041,778 - 89,072,092 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1864,671,524 - 64,701,024 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0869,833,320 - 69,863,536 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1871,481,094 - 71,510,689 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl871,481,089 - 71,510,689 (+)Ensemblpanpan1.1panPan2
RDH10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12921,886,014 - 21,912,451 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2921,885,012 - 21,911,303 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2922,150,310 - 22,176,734 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02921,995,836 - 22,022,275 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2921,994,920 - 22,022,273 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12922,053,870 - 22,080,295 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02922,090,663 - 22,117,118 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02922,371,574 - 22,398,035 (+)NCBIUU_Cfam_GSD_1.0
Rdh10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530357,360,563 - 57,388,453 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366482,060,125 - 2,088,833 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366482,060,131 - 2,088,021 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RDH10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl462,569,885 - 62,601,439 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1462,569,877 - 62,600,981 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RDH10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1868,903,665 - 68,933,536 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl868,904,352 - 68,933,792 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603972,438,768 - 72,468,649 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rdh10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474417,837,609 - 17,868,431 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474417,838,047 - 17,868,423 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rdh10
863 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:817
Count of miRNA genes:407
Interacting mature miRNAs:483
Transcripts:ENSMUST00000027053, ENSMUST00000152626
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301011Cplaq4_mcircadian period of locomotor activity 4 (mouse)Not determined1967344243673601Mouse
1301275Sle10_msystematic lupus erythematosus susceptibility 10 (mouse)Not determined1288219436882352Mouse
15092046Wngrme1_mweek nine growth rate, maternal effect 1 (mouse)1328014237782236Mouse
1301370Adip1_madiposity 1 (mouse)Not determined1288219436882352Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
15092044Wtgrme1_mweek ten growth rate, maternal effect 1 (mouse)1328014237782236Mouse
1301471Obq2_mobesity QTL 2 (mouse)Not determined1394162037941887Mouse
14700685Civq2_mcerebral infarct volume QTL 2 (mouse)11134048245340482Mouse
1301891Alcp25_malcohol preference locus 25 (mouse)Not determined1125203185Mouse
1300834Cia20_mcollagen induced arthritis 20 (mouse)Not determined1125203185Mouse
15092055Lgrme1_mlate growth rate, maternal effect 1 (mouse)1328014237782236Mouse
4141646Fecq3_mfecundity QTL 3 (mouse)Not determined11291692026517685Mouse
15092050Wsegrme1_mweek seven growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092051Wegrme1_mweek eight growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092048Wsigrme1_mweek six growth rate, maternal effect 1 (mouse)1328014237782236Mouse
1301482Morph1_mmorphine antinociception 1 (mouse)Not determined1130367747Mouse
10043970Obq23_mobesity QTL 23 (mouse)Not determined1501266539012665Mouse
10412226Alpq4_malcohol preference QTL 4 (mouse)Not determined1122976684Mouse

Markers in Region
Rdh10  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1A3UniSTS
cM Map112.0UniSTS
AI875664  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38116,132,157 - 16,132,239UniSTSGRCm38
MGSCv37116,122,238 - 16,122,320UniSTSGRCm37
Celera116,067,960 - 16,068,042UniSTS
Cytogenetic Map1A3UniSTS
cM Map112.0UniSTS
Whitehead/MRC_RH1268.7UniSTS
Whitehead/MRC_RH1268.62UniSTS
D1Ertd762e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38116,133,475 - 16,133,679UniSTSGRCm38
MGSCv37116,123,556 - 16,123,760UniSTSGRCm37
Celera116,069,103 - 16,069,307UniSTS
Cytogenetic Map1A3UniSTS
cM Map112.0UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000027053   ⟹   ENSMUSP00000027053
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl116,175,998 - 16,203,958 (+)Ensembl
GRCm38.p6 Ensembl116,105,774 - 16,133,734 (+)Ensembl
Ensembl Acc Id: ENSMUST00000152626
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl116,200,726 - 16,202,771 (+)Ensembl
GRCm38.p6 Ensembl116,130,502 - 16,132,547 (+)Ensembl
RefSeq Acc Id: NM_133832   ⟹   NP_598593
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39116,176,106 - 16,202,774 (+)NCBI
GRCm38116,105,882 - 16,132,550 (+)NCBI
MGSCv37116,095,963 - 16,122,631 (+)RGD
Celera116,041,876 - 16,068,353 (+)RGD
cM Map1 ENTREZGENE
Sequence:
Protein Sequences
Ensembl Protein ENSMUSP00000027053.8
RefSeq Acc Id: NP_598593   ⟸   NM_133832
- Sequence:
Ensembl Acc Id: ENSMUSP00000027053   ⟸   ENSMUST00000027053

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8VCH7-F1-model_v2 AlphaFold Q8VCH7 1-341 view protein structure

Promoters
RGD ID:6818377
Promoter ID:MM_KWN:179
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000062152
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36116,094,901 - 16,095,922 (+)MPROMDB
RGD ID:6873224
Promoter ID:EPDNEW_M63
Type:initiation region
Name:Rdh10_1
Description:Mus musculus retinol dehydrogenase 10 (all-trans) , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38116,105,864 - 16,105,924EPDNEW
RGD ID:6818379
Promoter ID:MM_KWN:180
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000062153
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36116,120,346 - 16,120,846 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1924238 AgrOrtholog
Ensembl Genes ENSMUSG00000025921 Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000027053.8 UniProtKB/Swiss-Prot
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/Swiss-Prot
InterPro NAD(P)-bd_dom_sf UniProtKB/Swiss-Prot
  Sc_DH/Rdtase_CS UniProtKB/Swiss-Prot
  SDR_fam UniProtKB/Swiss-Prot
KEGG Report mmu:98711 UniProtKB/Swiss-Prot
MGD MGI:1924238 ENTREZGENE
NCBI Gene 3110069K09Rik ENTREZGENE
PANTHER PKSB UniProtKB/Swiss-Prot
  RETINOL DEHYDROGENASE 10 UniProtKB/Swiss-Prot
Pfam adh_short UniProtKB/Swiss-Prot
PhenoGen Rdh10 PhenoGen
PRINTS GDHRDH UniProtKB/Swiss-Prot
  SDRFAMILY UniProtKB/Swiss-Prot
PROSITE ADH_SHORT UniProtKB/Swiss-Prot
Superfamily-SCOP SSF51735 UniProtKB/Swiss-Prot
UniProt RDH10_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q8CJ68 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-26 Rdh10  retinol dehydrogenase 10 (all-trans)  3110069K09Rik  RIKEN cDNA 3110069K09 gene  Symbol and/or name updated 27372883 PROVISIONAL
2024-08-21 3110069K09Rik  RIKEN cDNA 3110069K09 gene  Rdh10  retinol dehydrogenase 10 (all-trans)  Symbol and/or name change 5135510 APPROVED
2016-04-05 Rdh10  retinol dehydrogenase 10 (all-trans)  4921506A21Rik  RIKEN cDNA 4921506A21 gene  Data merged from RGD:1609485 737654 PROVISIONAL