Foxn3 (forkhead box N3) - Rat Genome Database
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Gene: Foxn3 (forkhead box N3) Mus musculus
Analyze
Symbol: Foxn3
Name: forkhead box N3
RGD ID: 1313905
MGI Page MGI
Description: Predicted to have DNA-binding transcription factor activity and cis-regulatory region sequence-specific DNA binding activity. Involved in craniofacial suture morphogenesis. Predicted to localize to nucleus. Is expressed in several structures, including central nervous system; genitourinary system; immune system; peripheral nervous system; and sensory organ. Orthologous to human FOXN3 (forkhead box N3); INTERACTS WITH 1,1-dichloroethene; 1,2-dimethylhydrazine; 2,3',4,4',5-Pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 5430426H20Rik; AA589593; AW556347; checkpoint suppressor 1; Ches; Ches1; Ches1l; forkhead box protein N3; HTLF; HTLFL1; MGC107530; MGC36260
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm6783  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391299,156,340 - 99,529,926 (-)NCBIGRCm39mm39
GRCm39 Ensembl1299,156,337 - 99,529,841 (-)Ensembl
GRCm381299,190,081 - 99,563,667 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1299,190,078 - 99,563,582 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712100,433,304 - 100,688,284 (-)NCBIGRCm37mm9NCBIm37
MGSCv361299,596,144 - 99,851,124 (-)NCBImm8
Celera12100,408,887 - 100,667,857 (-)NCBICelera
Cytogenetic Map12ENCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-methylcholanthrene  (ISO)
4-vinylcyclohexene dioxide  (EXP)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
7,12-dimethyltetraphene  (EXP)
acetamide  (ISO)
aflatoxin B1  (ISO)
aflatoxin B2  (ISO)
all-trans-retinoic acid  (ISO)
alpha-naphthoflavone  (ISO)
amphetamine  (ISO)
antirheumatic drug  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
carbon nanotube  (EXP)
chlorpyrifos  (ISO)
copper(II) sulfate  (ISO)
CU-O LINKAGE  (ISO)
cyclosporin A  (ISO)
dibutyl phthalate  (ISO)
dieldrin  (ISO)
dioxygen  (ISO)
diuron  (ISO)
doxorubicin  (ISO)
ethanol  (EXP)
flutamide  (ISO)
glafenine  (ISO)
leflunomide  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
methoxychlor  (EXP)
mifepristone  (ISO)
nefazodone  (ISO)
nimesulide  (ISO)
nitrofen  (ISO)
oxaliplatin  (ISO)
paracetamol  (EXP)
phenobarbital  (EXP)
potassium dichromate  (ISO)
propiconazole  (EXP)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
silicon dioxide  (EXP,ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (EXP,ISO)
topotecan  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
troglitazone  (EXP)
valproic acid  (ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA)

References

Additional References at PubMed
PMID:8889548   PMID:9321431   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:14681479   PMID:15489334  
PMID:15741177   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16602821   PMID:17967808   PMID:18287559   PMID:18799693   PMID:20059953   PMID:20691664   PMID:20932939   PMID:21873635  
PMID:23133627   PMID:24952961   PMID:29031500   PMID:29996093  


Genomics

Comparative Map Data
Foxn3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391299,156,340 - 99,529,926 (-)NCBIGRCm39mm39
GRCm39 Ensembl1299,156,337 - 99,529,841 (-)Ensembl
GRCm381299,190,081 - 99,563,667 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1299,190,078 - 99,563,582 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712100,433,304 - 100,688,284 (-)NCBIGRCm37mm9NCBIm37
MGSCv361299,596,144 - 99,851,124 (-)NCBImm8
Celera12100,408,887 - 100,667,857 (-)NCBICelera
Cytogenetic Map12ENCBI
FOXN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1489,124,871 - 89,619,149 (-)EnsemblGRCh38hg38GRCh38
GRCh381489,156,177 - 89,619,165 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371489,622,521 - 90,085,509 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361488,692,269 - 89,155,247 (-)NCBINCBI36hg18NCBI36
Build 341488,692,277 - 88,953,127NCBI
Celera1469,670,626 - 70,132,768 (-)NCBI
Cytogenetic Map14q31.3-q32.11NCBI
HuRef1469,797,362 - 70,258,776 (-)NCBIHuRef
CHM1_11489,560,279 - 90,023,548 (-)NCBICHM1_1
Foxn3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.26118,462,018 - 118,842,442 (-)NCBI
Rnor_6.0 Ensembl6123,187,726 - 123,577,695 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.06123,183,720 - 123,577,719 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06132,412,688 - 132,806,377 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46123,385,156 - 123,762,322 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.16123,387,656 - 123,597,077 (-)NCBI
Celera6116,022,168 - 116,383,731 (-)NCBICelera
Cytogenetic Map6q32NCBI
Foxn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543811,720,570 - 12,126,185 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543811,720,563 - 12,126,185 (-)NCBIChiLan1.0ChiLan1.0
FOXN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11489,134,673 - 89,468,817 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1489,140,892 - 89,387,807 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01469,778,191 - 70,238,813 (-)NCBIMhudiblu_PPA_v0panPan3
FOXN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1860,324,808 - 60,612,959 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3412,398,370 - 12,399,773 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha859,906,266 - 60,299,259 (-)NCBI
ROS_Cfam_1.0860,603,344 - 60,990,403 (-)NCBI
UMICH_Zoey_3.1860,279,420 - 60,672,434 (-)NCBI
UNSW_CanFamBas_1.0860,327,990 - 60,721,085 (-)NCBI
UU_Cfam_GSD_1.0860,655,678 - 61,049,079 (-)NCBI
Foxn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864015,233,255 - 15,508,229 (+)NCBI
SpeTri2.0NW_00493648816,560,732 - 16,828,972 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOXN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7111,039,633 - 111,451,893 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17111,036,492 - 111,454,106 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27117,699,681 - 117,907,020 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.27117,530,994 - 117,562,667 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap7qNCBI
FOXN3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12466,832,760 - 67,103,637 (-)NCBI
Foxn3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473412,748,001 - 13,154,992 (+)NCBI

Position Markers
AW556347  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381299,190,213 - 99,190,350UniSTSGRCm38
MGSCv3712100,428,423 - 100,428,560UniSTSGRCm37
Celera12100,404,006 - 100,404,143UniSTS
Cytogenetic Map12EUniSTS
Whitehead/MRC_RH12904.04UniSTS
45.MMHAP38FRG12.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv3712100,492,861 - 100,492,966UniSTSGRCm37
Celera12100,472,216 - 100,472,321UniSTS
Celera12100,468,569 - 100,468,674UniSTS
Celera12100,469,314 - 100,469,419UniSTS
Whitehead_YAC12 UniSTS
D12Mit78  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381299,202,733 - 99,202,936UniSTSGRCm38
MGSCv3712100,440,943 - 100,441,146UniSTSGRCm37
Celera12100,416,527 - 100,416,732UniSTS
Cytogenetic Map12EUniSTS
cM Map1246.0UniSTS
Whitehead Genetic1241.5UniSTS
Whitehead_YAC12 UniSTS
RH125012  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381299,195,815 - 99,195,909UniSTSGRCm38
MGSCv3712100,434,025 - 100,434,119UniSTSGRCm37
Celera12100,409,608 - 100,409,702UniSTS
Cytogenetic Map12EUniSTS
UniSTS:236921  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381299,252,857 - 99,253,058UniSTSGRCm38
MGSCv3712100,491,067 - 100,491,268UniSTSGRCm37
Celera12100,466,775 - 100,466,976UniSTS
Cytogenetic Map12EUniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301926Adip6_madiposity 6 (mouse)Not determined1273920648107920752Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277545446111545446Mouse
1301308Prdt4_mprion disease incubation time 4 (mouse)Not determined1288342095120129022Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80909934113419913Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1281022884115022884Mouse
1301836Heal5_mwound healing/regeneration 5 (mouse)Not determined1289972772120129022Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283565816117565965Mouse
14746976Manh73_mmandible shape 73 (mouse)126581035799810357Mouse
10412192Bbaa27_mB.burgdorferi-associated arthritis 27 (mouse)Not determined1291287446107342134Mouse
27226797Scvln19_msacral vertebrae length 2, 16 week (mouse)126210000099500000Mouse
4141738Tgq23_mtriglyceride QTL 23 (mouse)Not determined72146107106146107Mouse
1357463Vtbt14_mvertebral trabecular bone trait 14 (mouse)Not determined1292969663120129022Mouse
1301689Skull18_mskull morphology 18 (mouse)Not determined1273920648107920752Mouse
4142007Chlq17_mcirculating hormone level QTL 17 (mouse)Not determined1288086615120129022Mouse
1301269Sluc12_msusceptibility to lung cancer 12 (mouse)Not determined1296896717120129022Mouse
12910532Nrq10a_mnoise-induced hearing loss resistant QTL 10a (mouse)1292783591120129022Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235235497109969809Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282700137116700137Mouse
1357701Lvrq10_mliver weight QTL 10 (mouse)Not determined1280909934113419913Mouse
4142402Ccs1_mcolon cancer susceptibility 1 (mouse)Not determined90920648100056850Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80909934113419913Mouse
12910533Nrq10_mnoise-induced hearing loss resistant QTL 10 (mouse)1292783591120129022Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283565816117565965Mouse
39128213Lwq23_mliver weight QTL 10 (mouse)1280909934113419913Mouse
10402491Dipa4_mdrug induced psychomotor activation 4 (mouse)Not determined1291256256120129022Mouse
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285995320119995424Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80909934113419913Mouse
1300973Abmm_mantibody mediated myocarditis (mouse)Not determined1293298027120129022Mouse
5491194Mobq3_mmultigenic obesity QTL 3 (mouse)Not determined1289697812120129022Mouse
25823169Hrsq8_mhost response to SARS QTL 8, log titer (mouse)1281649471108529109Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268300000113400000Mouse
1300545Lifespan3_mlife span 3 (mouse)Not determined1288086615120129022Mouse
1302177Dps2_mdelta power in slow-wave sleep 2 (mouse)Not determined1294179630120129022Mouse
1302138Im6_mimmunoregulatory 6 (mouse)Not determined1296896717120129022Mouse
12910790Pwgrq7_mpre-weaning growth rate QTL 7 (mouse)1290970593108679049Mouse
1301922Bbaa6_mB.burgdorferi-associated arthritis 6 (mouse)Not determined1290342009120129022Mouse
10412156Nociq3_mnociceptive sensitivity inflammatory QTL 3 (mouse)Not determined1286349301114868033Mouse

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir574mmu-miR-574-5pOncomiRDBexternal_infoNANA23133627

Predicted Target Of
Summary Value
Count of predictions:2330
Count of miRNA genes:683
Interacting mature miRNAs:918
Transcripts:ENSMUST00000046859, ENSMUST00000085108, ENSMUST00000176311, ENSMUST00000176829, ENSMUST00000176928, ENSMUST00000176959, ENSMUST00000177269, ENSMUST00000177287, ENSMUST00000177451
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_183186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC125409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC125535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC133083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC134604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI448353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC029185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE623611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY717160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000046859   ⟹   ENSMUSP00000036035
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1299,190,078 - 99,393,797 (-)Ensembl
RefSeq Acc Id: ENSMUST00000085108   ⟹   ENSMUSP00000082189
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1299,195,094 - 99,450,074 (-)Ensembl
RefSeq Acc Id: ENSMUST00000176311
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1299,291,264 - 99,357,019 (-)Ensembl
RefSeq Acc Id: ENSMUST00000176829
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1299,209,503 - 99,291,277 (-)Ensembl
RefSeq Acc Id: ENSMUST00000176928   ⟹   ENSMUSP00000135749
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1299,388,345 - 99,563,508 (-)Ensembl
RefSeq Acc Id: ENSMUST00000176959
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1299,196,686 - 99,291,389 (-)Ensembl
RefSeq Acc Id: ENSMUST00000177269   ⟹   ENSMUSP00000135814
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1299,341,503 - 99,412,605 (-)Ensembl
RefSeq Acc Id: ENSMUST00000177287
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1299,387,405 - 99,450,097 (-)Ensembl
RefSeq Acc Id: ENSMUST00000177451   ⟹   ENSMUSP00000135082
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1299,195,094 - 99,393,072 (-)Ensembl
RefSeq Acc Id: ENSMUST00000221283
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1299,450,025 - 99,563,572 (-)Ensembl
RefSeq Acc Id: ENSMUST00000222261
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1299,196,670 - 99,330,063 (-)Ensembl
RefSeq Acc Id: ENSMUST00000222458   ⟹   ENSMUSP00000152082
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1299,196,411 - 99,291,278 (-)Ensembl
RefSeq Acc Id: ENSMUST00000222918
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1299,448,772 - 99,563,582 (-)Ensembl
RefSeq Acc Id: ENSMUST00000223484   ⟹   ENSMUSP00000152328
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1299,388,899 - 99,563,536 (-)Ensembl
RefSeq Acc Id: NM_183186   ⟹   NP_899009
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391299,161,353 - 99,416,333 (-)NCBI
GRCm381299,195,094 - 99,450,074 (-)NCBI
MGSCv3712100,433,304 - 100,688,284 (-)RGD
Celera12100,408,887 - 100,667,857 (-)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006516232   ⟹   XP_006516295
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391299,156,340 - 99,529,918 (-)NCBI
GRCm381299,190,081 - 99,563,666 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006516233   ⟹   XP_006516296
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391299,156,340 - 99,424,268 (-)NCBI
GRCm381299,190,081 - 99,458,009 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006516234   ⟹   XP_006516297
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391299,156,340 - 99,359,270 (-)NCBI
GRCm381299,190,081 - 99,393,011 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006516236   ⟹   XP_006516299
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391299,156,340 - 99,360,708 (-)NCBI
GRCm381299,190,081 - 99,394,444 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006516239   ⟹   XP_006516302
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391299,156,340 - 99,529,926 (-)NCBI
GRCm381299,190,081 - 99,563,667 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006516240   ⟹   XP_006516303
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391299,156,340 - 99,359,331 (-)NCBI
GRCm381299,190,081 - 99,393,072 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017315205   ⟹   XP_017170694
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391299,156,340 - 99,359,248 (-)NCBI
GRCm381299,190,081 - 99,392,989 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246925   ⟹   XP_030102785
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391299,156,340 - 99,529,795 (-)NCBI
GRCm381299,190,081 - 99,563,535 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246926   ⟹   XP_030102786
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391299,156,340 - 99,424,239 (-)NCBI
GRCm381299,190,081 - 99,457,980 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246927   ⟹   XP_030102787
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391299,156,340 - 99,529,911 (-)NCBI
GRCm381299,190,081 - 99,563,666 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246928   ⟹   XP_030102788
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391299,156,340 - 99,424,268 (-)NCBI
GRCm381299,190,081 - 99,458,009 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246929   ⟹   XP_030102789
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391299,156,340 - 99,424,300 (-)NCBI
GRCm381299,190,081 - 99,458,009 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157614   ⟹   XP_036013507
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391299,156,340 - 99,358,328 (-)NCBI
RefSeq Acc Id: XM_036157615   ⟹   XP_036013508
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391299,156,340 - 99,529,841 (-)NCBI
RefSeq Acc Id: XM_036157616   ⟹   XP_036013509
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391299,156,340 - 99,529,887 (-)NCBI
RefSeq Acc Id: XM_036157617   ⟹   XP_036013510
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391299,156,340 - 99,424,249 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_899009   ⟸   NM_183186
- UniProtKB: Q499D0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006516302   ⟸   XM_006516239
- Peptide Label: isoform X3
- UniProtKB: Q499D0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006516295   ⟸   XM_006516232
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006516296   ⟸   XM_006516233
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006516299   ⟸   XM_006516236
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006516303   ⟸   XM_006516240
- Peptide Label: isoform X3
- UniProtKB: Q499D0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006516297   ⟸   XM_006516234
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017170694   ⟸   XM_017315205
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_030102787   ⟸   XM_030246927
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030102785   ⟸   XM_030246925
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030102789   ⟸   XM_030246929
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030102788   ⟸   XM_030246928
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030102786   ⟸   XM_030246926
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000152328   ⟸   ENSMUST00000223484
RefSeq Acc Id: ENSMUSP00000036035   ⟸   ENSMUST00000046859
RefSeq Acc Id: ENSMUSP00000152082   ⟸   ENSMUST00000222458
RefSeq Acc Id: ENSMUSP00000082189   ⟸   ENSMUST00000085108
RefSeq Acc Id: ENSMUSP00000135814   ⟸   ENSMUST00000177269
RefSeq Acc Id: ENSMUSP00000135082   ⟸   ENSMUST00000177451
RefSeq Acc Id: ENSMUSP00000135749   ⟸   ENSMUST00000176928
RefSeq Acc Id: XP_036013509   ⟸   XM_036157616
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036013508   ⟸   XM_036157615
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036013510   ⟸   XM_036157617
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036013507   ⟸   XM_036157614
- Peptide Label: isoform X1
Protein Domains
Fork-head

Promoters
RGD ID:8678982
Promoter ID:EPDNEW_M17522
Type:initiation region
Name:Foxn3_1
Description:Mus musculus forkhead box N3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381299,393,042 - 99,393,102EPDNEW
RGD ID:6822702
Promoter ID:MM_KWN:12461
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B6
Transcripts:UC007ORY.1,   UC007ORZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3612100,800,716 - 100,802,042 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1918625 AgrOrtholog
Ensembl Genes ENSMUSG00000033713 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000036035 UniProtKB/Swiss-Prot
  ENSMUSP00000082189 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000135082 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000135749 UniProtKB/TrEMBL
  ENSMUSP00000135814 UniProtKB/TrEMBL
  ENSMUSP00000152082 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000046859 UniProtKB/Swiss-Prot
  ENSMUST00000085108 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000176928 UniProtKB/TrEMBL
  ENSMUST00000177269 UniProtKB/TrEMBL
  ENSMUST00000177451 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000222458 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Fork_head_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TF_fork_head_CS_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TF_fork_head_CS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:71375 UniProtKB/Swiss-Prot
MGD MGI:1918625 ENTREZGENE
NCBI Gene 71375 ENTREZGENE
Pfam Forkhead UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Foxn3 PhenoGen
PRINTS FORKHEAD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE FORK_HEAD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FORK_HEAD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FORK_HEAD_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00339 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1Y7VMU1_MOUSE UniProtKB/TrEMBL
  FOXN3_MOUSE UniProtKB/Swiss-Prot
  H3BLD8_MOUSE UniProtKB/TrEMBL
  H3BLJ5_MOUSE UniProtKB/TrEMBL
  Q3UF56_MOUSE UniProtKB/TrEMBL
  Q499D0 ENTREZGENE
UniProt Secondary Q8C5N8 UniProtKB/Swiss-Prot
  Q9CU83 UniProtKB/Swiss-Prot