Nab1 (Ngfi-A binding protein 1) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Nab1 (Ngfi-A binding protein 1) Mus musculus
Analyze
Symbol: Nab1
Name: Ngfi-A binding protein 1
RGD ID: 733808
MGI Page MGI
Description: Predicted to enable transcription coregulator activity. Acts upstream of or within several processes, including endochondral ossification; nervous system development; and regulation of epidermis development. Predicted to be active in nucleus. Is expressed in central nervous system; genitourinary system; lung epithelium; and paraxial mesenchyme. Orthologous to human NAB1 (NGFI-A binding protein 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: EGR-1-binding protein 1; NGFI-A-binding protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm13361  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39152,494,146 - 52,539,553 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl152,496,453 - 52,539,838 (-)EnsemblGRCm39 Ensembl
GRCm38152,455,849 - 52,500,712 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl152,457,294 - 52,500,679 (-)EnsemblGRCm38mm10GRCm38
MGSCv37152,512,693 - 52,557,292 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36152,402,423 - 52,444,902 (-)NCBIMGSCv36mm8
Celera152,994,293 - 53,038,893 (-)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map126.99NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-ethoxyethanol  (ISO)
2-methoxyethanol  (ISO)
2-methylcholine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP)
aflatoxin B1  (EXP,ISO)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
choline  (EXP)
cisplatin  (ISO)
clofibrate  (EXP)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
cyclosporin A  (EXP)
dexamethasone  (ISO)
dibutyl phthalate  (EXP,ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
entinostat  (ISO)
flutamide  (ISO)
folic acid  (EXP)
FR900359  (ISO)
gentamycin  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
isoprenaline  (EXP)
ketamine  (ISO)
L-methionine  (EXP)
menadione  (ISO)
methylmercury chloride  (ISO)
nefazodone  (ISO)
paracetamol  (EXP,ISO)
pentachlorophenol  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (ISO)
phenylephrine  (EXP)
pirinixic acid  (EXP)
piroxicam  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Identification of NAB1, a repressor of NGFI-A- and Krox20-mediated transcription. Russo MW, etal., Proc Natl Acad Sci U S A 1995 Jul 18;92(15):6873-7.
Additional References at PubMed
PMID:8668170   PMID:9126479   PMID:9774344   PMID:10349636   PMID:10654606   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12781685   PMID:14681479   PMID:16025126  
PMID:16136673   PMID:16141072   PMID:16141073   PMID:16602821   PMID:18287559   PMID:18456662   PMID:18524893   PMID:19244508   PMID:20059953   PMID:21267068   PMID:21677750   PMID:21873635  
PMID:22711520   PMID:23935197   PMID:38355793  


Genomics

Comparative Map Data
Nab1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39152,494,146 - 52,539,553 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl152,496,453 - 52,539,838 (-)EnsemblGRCm39 Ensembl
GRCm38152,455,849 - 52,500,712 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl152,457,294 - 52,500,679 (-)EnsemblGRCm38mm10GRCm38
MGSCv37152,512,693 - 52,557,292 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36152,402,423 - 52,444,902 (-)NCBIMGSCv36mm8
Celera152,994,293 - 53,038,893 (-)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map126.99NCBI
NAB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382190,648,895 - 190,692,766 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2190,646,746 - 190,692,766 (+)EnsemblGRCh38hg38GRCh38
GRCh372191,513,621 - 191,557,492 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362191,222,093 - 191,265,737 (+)NCBINCBI36Build 36hg18NCBI36
Build 342191,339,353 - 191,382,997NCBI
Celera2185,108,599 - 185,152,244 (+)NCBICelera
Cytogenetic Map2q32.2NCBI
HuRef2183,373,298 - 183,416,985 (+)NCBIHuRef
CHM1_12191,519,756 - 191,563,428 (+)NCBICHM1_1
T2T-CHM13v2.02191,138,150 - 191,182,082 (+)NCBIT2T-CHM13v2.0
Nab1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8956,545,547 - 56,585,045 (+)NCBIGRCr8
mRatBN7.2949,053,579 - 49,093,078 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl949,053,758 - 49,092,098 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx957,603,553 - 57,642,914 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0962,726,377 - 62,765,738 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0961,022,369 - 61,061,730 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0953,906,073 - 53,945,474 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl953,906,073 - 53,945,473 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0953,571,213 - 53,610,613 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4946,084,090 - 46,124,259 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1946,085,564 - 46,123,090 (+)NCBI
Celera946,720,081 - 46,759,582 (+)NCBICelera
Cytogenetic Map9q22NCBI
Nab1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554038,456,572 - 8,487,749 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554038,456,572 - 8,487,749 (-)NCBIChiLan1.0ChiLan1.0
NAB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21393,331,033 - 93,375,233 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B93,345,640 - 93,390,522 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B77,949,948 - 77,994,888 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B195,868,102 - 195,911,497 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B195,868,102 - 195,911,497 (+)Ensemblpanpan1.1panPan2
NAB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1371,207,619 - 1,243,546 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl371,207,638 - 1,241,610 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha372,156,331 - 2,192,275 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0371,094,635 - 1,131,660 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl371,083,693 - 1,131,652 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1371,104,565 - 1,141,421 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0371,072,340 - 1,109,051 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0371,101,123 - 1,137,919 (+)NCBIUU_Cfam_GSD_1.0
Nab1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303149,289,091 - 149,334,536 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365067,502,608 - 7,548,981 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365067,503,544 - 7,548,981 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NAB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1595,248,814 - 95,295,081 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11595,248,703 - 95,295,078 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215106,592,271 - 106,602,122 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NAB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11076,164,199 - 76,206,898 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1076,174,592 - 76,204,464 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040123,268,481 - 123,311,813 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nab1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248545,393,525 - 5,423,580 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nab1
1304 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1053
Count of miRNA genes:532
Interacting mature miRNAs:660
Transcripts:ENSMUST00000069792, ENSMUST00000164747, ENSMUST00000167732, ENSMUST00000168082, ENSMUST00000170269
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1357524W6q14_mweight 6 weeks QTL 14 (mouse)Not determined13476013873976915Mouse
12910788Pwgrq9_mpost-weaning growth rate QTL 9 (mouse)14086800867270256Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14293803176938167Mouse
1301073Orch5_mautoimmune orchitis resistance 5 (mouse)Not determined11906535153065454Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14127539975275399Mouse
4141305Tgq9_mtriglyceride QTL 9 (mouse)Not determined5142160585421605Mouse
1357651Lgq5_mlate growth QTL 5 (mouse)Not determined13476013873976915Mouse
12910786Pwgrq10_mpost-weaning growth rate QTL 10 (mouse)14086800867270256Mouse
11100001Col4a1m1_mcollagen, type IV, alpha 1 modifier 1 (mouse)12555019162946882Mouse
1301211Bbaa11_mB.burgdorferi-associated arthritis 11 (mouse)Not determined14888900682889210Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1558855Eae30_mexperimental allergic encephalomyelitis susceptibility 30 (mouse)Not determined14541777372975057Mouse
1301954Lrnx11_mlearning-contextual 11 (mouse)Not determined13913280874516365Mouse
12880407V125Dq2_mvitamin D active form serum level QTL 2 (mouse)11933908153339081Mouse
1357824Estoq4_membryo survival total QTL 4 (mouse)Not determined13476013873976915Mouse
1357506W10q6_mweight 10 weeks QTL 6 (mouse)Not determined13476013873976915Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4225966776259667Mouse
39128207Lwq16_mliver weight QTL 16 (mouse)13476013873976915Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
4142307Shali1_msurvival time to hyperoxic acute lung injury 1 (mouse)Not determined5196402570406589Mouse
12880409V125Dq1_mvitamin D active form serum level QTL 1 (mouse)12603916060039160Mouse
4142433Hbnr1_mHeligmosomoides bakeri nematode resistance 1 (mouse)Not determined2555019158273271Mouse
1301616Yaa2_mY-linked autoimmune acceleration 2 (mouse)Not determined14685469080854839Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
10043965Obq24_mobesity QTL 24 (mouse)Not determined15089021684890216Mouse
1301430Cdcs2_mcytokine deficiency colitis susceptibility 2 (mouse)Not determined14889234582892485Mouse
12879917Shm3_msperm head morphology 3 (mouse)14418690462946882Mouse
1301240Sluc15_msusceptibility to lung cancer 15 (mouse)Not determined11906535153065454Mouse
1357759W3q12_mweight 3 weeks QTL 12 (mouse)Not determined13476013873976915Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1558905Gct7_mgranulosa cell tumorigenesis 7 (mouse)Not determined14734989481350013Mouse
1301756Pgia1_mproteoglycan induced arthritis 1 (mouse)Not determined11906535153065454Mouse
1558822Vas1_mautoimmune vasitis resistance 1 (mouse)Not determined14888900682889210Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14594675579946882Mouse
1357475w3q13_mweight 3 weeks QTL 13 (mouse)Not determined12310959173976915Mouse
12910780Pwgrq11_mpost-weaning growth rate QTL 11 (mouse)14086800867270256Mouse
1301225Sle7_msystematic lupus erythematosus susceptibility 7 (mouse)Not determined14685469080854839Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14127312475273271Mouse

Markers in Region
U47008  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38152,459,042 - 52,459,142UniSTSGRCm38
MGSCv37152,515,886 - 52,515,986UniSTSGRCm37
Celera152,997,486 - 52,997,586UniSTS
Cytogenetic Map1C1.1UniSTS
Whitehead_YAC2 UniSTS
MARC_12193-12194:1004713732:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38152,490,122 - 52,490,536UniSTSGRCm38
MGSCv37152,546,966 - 52,547,380UniSTSGRCm37
Celera153,028,567 - 53,028,981UniSTS
Cytogenetic Map1C1.1UniSTS
Nab1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1C1.1UniSTS
cM Map126.99UniSTS


Sequence


Ensembl Acc Id: ENSMUST00000069792   ⟹   ENSMUSP00000066696
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl152,496,453 - 52,539,838 (-)Ensembl
GRCm38.p6 Ensembl152,457,294 - 52,500,679 (-)Ensembl
Ensembl Acc Id: ENSMUST00000167732
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl152,498,400 - 52,506,216 (-)Ensembl
GRCm38.p6 Ensembl152,459,241 - 52,467,057 (-)Ensembl
Ensembl Acc Id: ENSMUST00000168082
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl152,529,469 - 52,539,474 (-)Ensembl
GRCm38.p6 Ensembl152,490,310 - 52,500,315 (-)Ensembl
Ensembl Acc Id: ENSMUST00000170269   ⟹   ENSMUSP00000131239
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl152,498,377 - 52,529,895 (-)Ensembl
GRCm38.p6 Ensembl152,459,218 - 52,490,736 (-)Ensembl
Ensembl Acc Id: ENSMUST00000186764   ⟹   ENSMUSP00000141191
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl152,496,453 - 52,539,459 (-)Ensembl
GRCm38.p6 Ensembl152,457,294 - 52,500,300 (-)Ensembl
RefSeq Acc Id: NM_001420345   ⟹   NP_001407274
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39152,494,146 - 52,539,553 (-)NCBI
RefSeq Acc Id: NM_001420346   ⟹   NP_001407275
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39152,494,146 - 52,539,553 (-)NCBI
RefSeq Acc Id: NM_001420347   ⟹   NP_001407276
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39152,494,146 - 52,539,553 (-)NCBI
RefSeq Acc Id: NM_008667   ⟹   NP_032693
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39152,494,146 - 52,539,553 (-)NCBI
GRCm38152,455,849 - 52,500,448 (-)NCBI
MGSCv37152,512,693 - 52,557,292 (-)RGD
Celera152,994,293 - 53,038,893 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_032693   ⟸   NM_008667
- Peptide Label: isoform 1
- UniProtKB: Q99J24 (UniProtKB/Swiss-Prot),   Q61122 (UniProtKB/Swiss-Prot),   E9PZ64 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000131239   ⟸   ENSMUST00000170269
Ensembl Acc Id: ENSMUSP00000141191   ⟸   ENSMUST00000186764
Ensembl Acc Id: ENSMUSP00000066696   ⟸   ENSMUST00000069792
RefSeq Acc Id: NP_001407276   ⟸   NM_001420347
- Peptide Label: isoform 2
- UniProtKB: A0A087WSU4 (UniProtKB/TrEMBL),   E9PZ64 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001407275   ⟸   NM_001420346
- Peptide Label: isoform 2
- UniProtKB: A0A087WSU4 (UniProtKB/TrEMBL),   E9PZ64 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001407274   ⟸   NM_001420345
- Peptide Label: isoform 2
- UniProtKB: Q99J24 (UniProtKB/Swiss-Prot),   Q61122 (UniProtKB/Swiss-Prot),   E9PZ64 (UniProtKB/TrEMBL)
Protein Domains
NAB co-repressor   Nab N-terminal   Nab1 C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q61122-F1-model_v2 AlphaFold Q61122 1-486 view protein structure

Promoters
RGD ID:6873674
Promoter ID:EPDNEW_M288
Type:initiation region
Name:Nab1_1
Description:Mus musculus Ngfi-A binding protein 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38152,500,394 - 52,500,454EPDNEW
RGD ID:6818142
Promoter ID:MM_KWN:707
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Liver,   Lung
Transcripts:NM_008667
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36152,557,056 - 52,558,007 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107564 AgrOrtholog
Ensembl Genes ENSMUSG00000002881 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000069792 ENTREZGENE
  ENSMUST00000069792.14 UniProtKB/Swiss-Prot
  ENSMUST00000170269.2 UniProtKB/TrEMBL
  ENSMUST00000186764 ENTREZGENE
  ENSMUST00000186764.7 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.2010 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Nab1_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAB_co-repressor_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAB_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nab_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NCD2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:17936 UniProtKB/Swiss-Prot
MGD MGI:107564 ENTREZGENE
NCBI Gene 17936 ENTREZGENE
PANTHER NGFI-A-BINDING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12623 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Nab1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NCD1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NCD2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nab1 PhenoGen
UniProt A0A087WSU4 ENTREZGENE, UniProtKB/TrEMBL
  E9PZ64 ENTREZGENE, UniProtKB/TrEMBL
  NAB1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q99J24 ENTREZGENE
  Q9CU49_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q99J24 UniProtKB/Swiss-Prot