Chst11 (carbohydrate sulfotransferase 11) - Rat Genome Database

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Gene: Chst11 (carbohydrate sulfotransferase 11) Mus musculus
Analyze
Symbol: Chst11
Name: carbohydrate sulfotransferase 11
RGD ID: 1318148
MGI Page MGI
Description: Exhibits N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity. Involved in several processes, including chondroitin sulfate biosynthetic process; post-anal tail morphogenesis; and skeletal system development. Predicted to localize to Golgi apparatus and integral component of membrane. Is expressed in several structures, including alimentary system; central nervous system; ear; heart; and skeletal system. Orthologous to human CHST11 (carbohydrate sulfotransferase 11); PARTICIPATES IN sulfite oxidase deficiency pathway; chondroitin sulfate biosynthetic pathway; INTERACTS WITH 1,1-dichloroethene; 2,3,7,8-tetrachlorodibenzodioxine; 4-hydroxyphenyl retinamide.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 1110020P09Rik; C4s; C4S-1; C4ST; C4ST-; C4ST-1; C4ST1; chondroitin 4; chondroitin 4-O-sulfotransferase 1; chondroitin 4-sulfotransferase 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391082,820,274 - 83,031,738 (+)NCBIGRCm39mm39
GRCm39 Ensembl1082,821,332 - 83,031,734 (+)Ensembl
GRCm381082,984,440 - 83,195,904 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1082,985,498 - 83,195,900 (+)EnsemblGRCm38mm10GRCm38
MGSCv371082,448,242 - 82,658,645 (+)NCBIGRCm37mm9NCBIm37
MGSCv361082,415,296 - 82,625,699 (+)NCBImm8
Celera1084,972,909 - 85,183,903 (+)NCBICelera
Cytogenetic Map10C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10722746   PMID:10922068   PMID:10988300   PMID:11042159   PMID:11056388   PMID:11076861   PMID:11217851   PMID:12351172   PMID:12477932   PMID:14681479  
PMID:16079159   PMID:16141072   PMID:16141073   PMID:17040900   PMID:17599069   PMID:18079434   PMID:18539921   PMID:18667431   PMID:19915053   PMID:20812917   PMID:21123170   PMID:21138417  
PMID:21284936   PMID:21677750   PMID:21873635   PMID:22159417   PMID:27751852   PMID:27996060   PMID:28185240   PMID:29539633   PMID:30228991   PMID:32201365  


Genomics

Comparative Map Data
Chst11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391082,820,274 - 83,031,738 (+)NCBIGRCm39mm39
GRCm39 Ensembl1082,821,332 - 83,031,734 (+)Ensembl
GRCm381082,984,440 - 83,195,904 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1082,985,498 - 83,195,900 (+)EnsemblGRCm38mm10GRCm38
MGSCv371082,448,242 - 82,658,645 (+)NCBIGRCm37mm9NCBIm37
MGSCv361082,415,296 - 82,625,699 (+)NCBImm8
Celera1084,972,909 - 85,183,903 (+)NCBICelera
Cytogenetic Map10C1NCBI
CHST11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12104,455,295 - 104,762,014 (+)EnsemblGRCh38hg38GRCh38
GRCh3812104,456,948 - 104,762,014 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712104,850,726 - 105,155,792 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612103,370,614 - 103,676,013 (+)NCBINCBI36hg18NCBI36
Build 3412103,353,244 - 103,654,350NCBI
Celera12104,515,392 - 104,820,429 (+)NCBI
Cytogenetic Map12q23.3NCBI
HuRef12101,909,453 - 102,214,785 (+)NCBIHuRef
CHM1_112104,816,552 - 105,121,568 (+)NCBICHM1_1
Chst11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2720,524,535 - 20,743,008 (-)NCBI
Rnor_6.0 Ensembl726,645,422 - 26,859,716 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0726,641,856 - 26,890,503 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0726,767,389 - 26,981,343 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4722,721,892 - 22,950,084 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1722,742,162 - 22,970,357 (-)NCBI
Celera717,709,216 - 17,922,331 (-)NCBICelera
Cytogenetic Map7q13NCBI
Chst11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540538,985,046 - 39,139,021 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540538,985,046 - 39,134,130 (+)NCBIChiLan1.0ChiLan1.0
CHST11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112105,730,321 - 105,735,380 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12105,431,075 - 105,731,172 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012102,035,480 - 102,340,084 (+)NCBIMhudiblu_PPA_v0panPan3
CHST11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11033,555,629 - 33,810,808 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1033,555,628 - 33,810,558 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1033,472,156 - 33,730,826 (-)NCBI
ROS_Cfam_1.01034,395,250 - 34,654,055 (-)NCBI
UMICH_Zoey_3.11034,130,242 - 34,389,255 (-)NCBI
UNSW_CanFamBas_1.01034,413,800 - 34,672,705 (-)NCBI
UU_Cfam_GSD_1.01034,607,391 - 34,867,023 (-)NCBI
Chst11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494516,875,838 - 17,082,355 (-)NCBI
SpeTri2.0NW_0049364929,886,269 - 10,092,725 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHST11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl579,787,995 - 80,067,816 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1579,788,558 - 80,068,903 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2583,185,065 - 83,190,211 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CHST11
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11199,662,890 - 99,982,276 (+)NCBI
ChlSab1.1 Ensembl1199,665,290 - 99,981,977 (+)Ensembl
Vero_WHO_p1.0NW_023666037145,029,522 - 145,339,512 (-)NCBI
Chst11
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247504,227,229 - 4,391,177 (-)NCBI

Position Markers
RH135904  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381083,040,818 - 83,041,016UniSTSGRCm38
MGSCv371082,503,563 - 82,503,761UniSTSGRCm37
Celera1085,028,200 - 85,028,398UniSTS
Cytogenetic Map10C1UniSTS
D10Mit160  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381083,183,489 - 83,183,618UniSTSGRCm38
MGSCv371082,646,234 - 82,646,363UniSTSGRCm37
Celera1085,171,491 - 85,171,620UniSTS
Cytogenetic Map10C1UniSTS
cM Map1047.0UniSTS
Whitehead Genetic1042.6UniSTS
Whitehead_YAC10 UniSTS
D10Mit227  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381083,107,360 - 83,107,473UniSTSGRCm38
MGSCv371082,570,105 - 82,570,218UniSTSGRCm37
Celera1085,095,071 - 85,095,184UniSTS
Cytogenetic Map10C1UniSTS
cM Map1047.0UniSTS
Whitehead Genetic1042.6UniSTS
Whitehead_YAC10 UniSTS
Chst11  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381083,191,561 - 83,191,701UniSTSGRCm38
Celera1085,179,564 - 85,179,704UniSTS
Cytogenetic Map10C1UniSTS
cM Map10 UniSTS
Chst11  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10C1UniSTS
cM Map10 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108359714116355075Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101023252187565233Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101282830784243920Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101282830784243920Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101282830784243920Mouse
1357893Lvrq4_mliver weight QTL 4 (mouse)Not determined101282830784243920Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1282830784243920Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1282830784243920Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1282830784243920Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1282830784243920Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101282830784243920Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018383585125739363Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1019000000129800000Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021532255114381325Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102300000091200000Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024800000121200000Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039300000129800000Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039300000129800000Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1045000000116100000Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045600000120800000Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104950223383502378Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined105001240884012633Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined105001240884012633Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined105001240884012633Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined105001244384012618Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined105001244384012618Mouse
1300882Ath17_matherosclerosis 17 (mouse)Not determined105125566085255809Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105125566085255809Mouse
14746991Manh68_mmandible shape 68 (mouse)105244466786444667Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105868113592681262Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059500000122500000Mouse
13208560Wght9_mweight 9 (mouse)1060000000121000000Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1064100000116100000Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106565510499655287Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106565510499655287Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106565510499655287Mouse
1302035Lmb4_mlupus in MRL and B6 F2 cross (mouse)Not determined106701240892422811Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067500000111900000Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1068000000125000000Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069900000132500000Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073671039107671185Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1074151384125680038Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1074151384125680038Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075502706109502905Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75502706109502905Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075502706109502905Mouse
11251717Siim1_mstress induced immobility 1 (mouse)1078545406112545406Mouse
14747004Mancz8_mmandible centroid size 8 (mouse)1082242550116242550Mouse
1301165Lith7_mlithogenic gene 7 (mouse)Not determined1082473556116473795Mouse
11059550Lmr32a_mleishmaniasis resistance 32a (mouse)1082473556116473795Mouse
11059551Lmr32b_mleishmaniasis resistance 32b (mouse)1082473556116473795Mouse
11059553Lmr32d_mleishmaniasis resistance 32d (mouse)1082473556116473795Mouse
11059554Lmr32e_mleishmaniasis resistance 32e (mouse)1082473556116473795Mouse
11059555Lmr32f_mleishmaniasis resistance 32f (mouse)1082473556116473795Mouse
10043881Adip24_madiposity 24 (mouse)Not determined1082556941116557090Mouse
4141382Ssrq4_mstress response QTL 4 (mouse)Not determined8265510491020240Mouse
12910789Pwgrq19_mpost-weaning growth rate QTL 19 (mouse)108299286692333194Mouse
4141054mwfh_mmodifier of white forlock hypopigmentation (mouse)Not determined83181141117181274Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1743
Count of miRNA genes:718
Interacting mature miRNAs:935
Transcripts:ENSMUST00000040110
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000040110   ⟹   ENSMUSP00000045349
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1082,985,498 - 83,195,900 (+)Ensembl
RefSeq Acc Id: NM_021439   ⟹   NP_067414
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391082,821,331 - 83,031,734 (+)NCBI
GRCm381082,985,497 - 83,195,900 (+)NCBI
MGSCv371082,448,242 - 82,658,645 (+)RGD
Celera1084,972,909 - 85,183,903 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006513908   ⟹   XP_006513971
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391082,869,274 - 83,031,738 (+)NCBI
GRCm381083,033,426 - 83,195,904 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006513909   ⟹   XP_006513972
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391082,820,274 - 83,031,738 (+)NCBI
GRCm381082,984,440 - 83,195,904 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_067414   ⟸   NM_021439
- UniProtKB: Q9JME2 (UniProtKB/Swiss-Prot),   B9EHC3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006513972   ⟸   XM_006513909
- Peptide Label: isoform X2
- UniProtKB: B7ZMT9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006513971   ⟸   XM_006513908
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000045349   ⟸   ENSMUST00000040110

Promoters
RGD ID:6819110
Promoter ID:MM_KWN:5112
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000068883
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361082,447,776 - 82,448,677 (+)MPROMDB
RGD ID:8672872
Promoter ID:EPDNEW_M14467
Type:initiation region
Name:Chst11_1
Description:Mus musculus carbohydrate sulfotransferase 11 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381082,985,486 - 82,985,546EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1927166 AgrOrtholog
Ensembl Genes ENSMUSG00000034612 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000045349 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000040110 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro Carb_sulfotrans_8-10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sulfotransferase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:58250 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1927166 ENTREZGENE
NCBI Gene 58250 ENTREZGENE
PANTHER PTHR12137 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Sulfotransfer_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Chst11 PhenoGen
UniProt B7ZMT9 ENTREZGENE, UniProtKB/TrEMBL
  B9EHC3 ENTREZGENE, UniProtKB/TrEMBL
  CHSTB_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q9JJS2 UniProtKB/Swiss-Prot