Rarg (retinoic acid receptor, gamma) - Rat Genome Database

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Gene: Rarg (retinoic acid receptor, gamma) Mus musculus
Analyze
Symbol: Rarg
Name: retinoic acid receptor, gamma
RGD ID: 11218
MGI Page MGI
Description: Enables several functions, including DNA-binding transcription factor activity; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and retinoid X receptor binding activity. Involved in growth plate cartilage chondrocyte growth and limb development. Acts upstream of or within several processes, including animal organ development; regulation of apoptotic process; and regulation of transcription by RNA polymerase II. Located in nucleus. Part of transcription regulator complex. Is expressed in several structures, including alimentary system; central nervous system; embryo mesenchyme; genitourinary system; and limb. Orthologous to human RARG (retinoic acid receptor gamma); PARTICIPATES IN retinoic acid signaling pathway; INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 17beta-hydroxy-5alpha-androstan-3-one.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AI385767; MGC11555; MGC18523; Nr1b3; nuclear receptor subfamily 1 group B member 3; RAR gamma 2; RAR-gamma; RARD; RARgamma2; retinoic acid receptor gamma; retinoic acid receptor gamma 4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915102,143,373 - 102,165,957 (-)NCBIGRCm39mm39
GRCm39 Ensembl15102,143,373 - 102,165,952 (-)Ensembl
GRCm3815102,234,938 - 102,257,522 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15102,234,938 - 102,257,517 (-)EnsemblGRCm38mm10GRCm38
MGSCv3715102,065,371 - 102,087,914 (-)NCBIGRCm37mm9NCBIm37
MGSCv3615102,062,974 - 102,085,313 (-)NCBImm8
Celera15104,391,902 - 104,414,975 (-)NCBICelera
Cytogenetic Map15F2NCBI
cM Map1557.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-naphthylamine  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (ISO)
4-vinylcyclohexene dioxide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
8-Br-cAMP  (ISO)
9-cis-retinoic acid  (EXP,ISO)
acetamide  (ISO)
acrylamide  (ISO)
adapalene  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
aldrin  (ISO)
all-trans-4-hydroxyretinoic acid  (ISO)
all-trans-4-oxoretinoic acid  (ISO)
all-trans-retinoic acid  (EXP,ISO)
all-trans-retinol  (EXP)
aristolochic acid  (ISO)
arotinoid acid  (EXP,ISO)
arsenous acid  (EXP)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (EXP)
carotenoid  (EXP)
cisplatin  (ISO)
cyclophosphamide  (ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (EXP)
dieldrin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
endrin  (ISO)
enilconazole  (ISO)
ethanol  (ISO)
ezetimibe  (ISO)
griseofulvin  (EXP)
isotretinoin  (ISO)
methamphetamine  (EXP)
methoxychlor  (EXP)
mifepristone  (ISO)
nicotine  (ISO)
orphenadrine  (ISO)
paracetamol  (ISO)
phenytoin  (EXP)
potassium chromate  (ISO)
potassium dichromate  (EXP)
quinomethionate  (ISO)
Ro 41-5253  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tamibarotene  (EXP)
tazarotene  (ISO)
tazarotenic acid  (ISO)
testosterone  (ISO)
thiazoles  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
toluene  (ISO)
tributylstannane  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
triphenyl phosphate  (ISO)
triptonide  (EXP)
valproic acid  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
anterior/posterior pattern specification  (IGI,IMP)
bone development  (IGI,IMP)
bone morphogenesis  (IGI,IMP)
camera-type eye development  (IGI)
cell differentiation  (IBA)
cellular response to leukemia inhibitory factor  (IEP)
cellular response to retinoic acid  (IDA,ISO)
chondrocyte development  (IMP)
embryonic camera-type eye development  (IGI)
embryonic eye morphogenesis  (IGI)
embryonic hindlimb morphogenesis  (IGI)
epithelium development  (IMP)
face development  (IGI)
gland development  (IMP)
glandular epithelial cell development  (IGI)
growth plate cartilage chondrocyte growth  (IMP)
growth plate cartilage development  (IGI)
Harderian gland development  (IMP)
hormone-mediated signaling pathway  (IBA)
limb development  (IGI,IMP)
multicellular organism growth  (IGI)
negative regulation of apoptotic process  (IGI)
negative regulation of cartilage development  (IMP)
negative regulation of cell differentiation  (IMP)
negative regulation of cell population proliferation  (IGI)
negative regulation of chondrocyte differentiation  (IMP)
negative regulation of transcription by RNA polymerase II  (IBA,IDA)
neural tube closure  (IGI)
positive regulation of apoptotic process  (IGI)
positive regulation of cell population proliferation  (IGI,ISO)
positive regulation of gene expression  (IDA)
positive regulation of programmed cell death  (IGI)
positive regulation of transcription by RNA polymerase II  (IBA,IC,IDA,IGI)
prostate gland epithelium morphogenesis  (IMP)
regulation of gene expression  (IGI)
regulation of myelination  (ISO)
regulation of myeloid cell differentiation  (IGI)
regulation of transcription, DNA-templated  (IEA)
reproductive structure development  (IMP)
response to retinoic acid  (ISO)
retina development in camera-type eye  (IGI)
retinal pigment epithelium development  (IGI)
retinoic acid receptor signaling pathway  (IBA,IMP,ISO)
trachea cartilage development  (IMP)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal abducens nerve morphology  (IAGP)
abnormal alisphenoid bone morphology  (IAGP)
abnormal anterior eye segment morphology  (IAGP)
abnormal aortic valve morphology  (IAGP)
abnormal artery morphology  (IAGP)
abnormal arytenoid cartilage morphology  (IAGP)
abnormal autopod morphology  (IAGP)
abnormal axial skeleton morphology  (IAGP)
abnormal basioccipital bone morphology  (IAGP)
abnormal brain commissure morphology  (IAGP)
abnormal brain morphology  (IAGP)
abnormal cardiovascular system morphology  (IAGP)
abnormal carpal bone morphology  (IAGP)
abnormal cartilage morphology  (IAGP)
abnormal cerebral hemisphere morphology  (IAGP)
abnormal cervical atlas morphology  (IAGP)
abnormal cervical axis morphology  (IAGP)
abnormal cervical vertebrae morphology  (IAGP)
abnormal conjunctiva morphology  (IAGP)
abnormal conjunctival sac morphology  (IAGP)
abnormal corneal stroma morphology  (IAGP)
abnormal cribriform plate morphology  (IAGP)
abnormal cricoid cartilage morphology  (IAGP)
abnormal epidermal lamellar body morphology  (IAGP)
abnormal epidermal layer morphology  (IAGP)
abnormal epidermis stratum corneum morphology  (IAGP)
abnormal eye development  (IAGP)
abnormal eyelid morphology  (IAGP)
abnormal folding of telencephalic vesicles  (IAGP)
abnormal foot pad morphology  (IAGP)
abnormal fourth pharyngeal arch artery morphology  (IAGP)
abnormal frontal bone morphology  (IAGP)
abnormal Harderian gland development  (IAGP)
abnormal Harderian gland morphology  (IAGP)
abnormal hyoid bone morphology  (IAGP)
abnormal incus morphology  (IAGP)
abnormal incus short process morphology  (IAGP)
abnormal interventricular septum membranous part morphology  (IAGP)
abnormal iris stroma morphology  (IAGP)
abnormal keratinocyte morphology  (IAGP)
abnormal lacrimal gland development  (IAGP)
abnormal lateral ventricle morphology  (IAGP)
abnormal lens fiber morphology  (IAGP)
abnormal lens morphology  (IAGP)
abnormal lumbar vertebrae morphology  (IAGP)
abnormal maxillary shelf morphology  (IAGP)
abnormal meninges morphology  (IAGP)
abnormal metacarpal bone morphology  (IAGP)
abnormal metanephric mesenchyme morphology  (IAGP)
abnormal nasal bone morphology  (IAGP)
abnormal nasal capsule morphology  (IAGP)
abnormal nasal septum cartilage morphology  (IAGP)
abnormal neurocranium morphology  (IAGP)
abnormal occipital bone morphology  (IAGP)
abnormal phalanx morphology  (IAGP)
abnormal pituitary gland development  (IAGP)
abnormal pollex morphology  (IAGP)
abnormal presphenoid bone morphology  (IAGP)
abnormal prostate gland morphology  (IAGP)
abnormal respiratory system morphology  (IAGP)
abnormal response to vitamins  (IAGP)
abnormal retina morphology  (IAGP)
abnormal retinal neuronal layer morphology  (IAGP)
abnormal scapula morphology  (IAGP)
abnormal sixth pharyngeal arch artery morphology  (IAGP)
abnormal skeleton development  (IAGP)
abnormal skeleton morphology  (IAGP)
abnormal skin morphology  (IAGP)
abnormal sternum morphology  (IAGP)
abnormal sublingual duct morphology  (IAGP)
abnormal submandibular duct morphology  (IAGP)
abnormal submandibular gland morphology  (IAGP)
abnormal telencephalon morphology  (IAGP)
abnormal thoracic vertebrae morphology  (IAGP)
abnormal thyroid cartilage morphology  (IAGP)
abnormal tracheal cartilage morphology  (IAGP)
abnormal upper incisor morphology  (IAGP)
abnormal upper lip morphology  (IAGP)
abnormal ureter morphology  (IAGP)
abnormal ureteric bud invasion  (IAGP)
abnormal uterus morphology  (IAGP)
abnormal ventral tubercle of atlas morphology  (IAGP)
abnormal vertebrae morphology  (IAGP)
abnormal vertebral arch morphology  (IAGP)
abnormal vertebral spinous process morphology  (IAGP)
abnormal vitreous body morphology  (IAGP)
absent cerebellum  (IAGP)
absent cochlear ganglion  (IAGP)
absent cornea  (IAGP)
absent cranial vagina  (IAGP)
absent eye anterior chamber  (IAGP)
absent fetal ductus arteriosus  (IAGP)
absent Harderian gland  (IAGP)
absent hindbrain  (IAGP)
absent kidney  (IAGP)
absent kidney pelvis  (IAGP)
absent metoptic pillar  (IAGP)
absent nasal septum  (IAGP)
absent nasolacrimal duct  (IAGP)
absent neurocranium  (IAGP)
absent organ of Corti  (IAGP)
absent outer ear  (IAGP)
absent premaxilla  (IAGP)
absent presphenoid bone  (IAGP)
absent radius  (IAGP)
absent retinal inner plexiform layer  (IAGP)
absent sclera  (IAGP)
absent seminal vesicle  (IAGP)
absent stapedial artery  (IAGP)
absent sublingual duct  (IAGP)
absent sublingual gland  (IAGP)
absent temporal bone zygomatic process  (IAGP)
absent tracheal cartilage rings  (IAGP)
absent upper incisors  (IAGP)
absent ureter  (IAGP)
absent ureteric bud  (IAGP)
absent uterus  (IAGP)
absent vas deferens  (IAGP)
absent vomer bone  (IAGP)
anophthalmia  (IAGP)
aphakia  (IAGP)
basisphenoid bone foramen  (IAGP)
bowed tibia  (IAGP)
cervical vertebral fusion  (IAGP)
cervical vertebral transformation  (IAGP)
cleft palate  (IAGP)
cleft upper lip  (IAGP)
corneal-lenticular stalk  (IAGP)
cricoid and tracheal cartilage fusion  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased fetal size  (IAGP)
decreased periocular mesenchyme apoptosis  (IAGP)
decreased physiological sensitivity to xenobiotic  (IAGP)
decreased survivor rate  (IAGP)
decreased ventral retina size  (IAGP)
double outlet right ventricle  (IAGP)
ectopic cartilage  (IAGP)
ectopic parathyroid gland  (IAGP)
ectopic thymus  (IAGP)
ectopic thyroid gland  (IAGP)
ectopic ureter  (IAGP)
ethmoturbinate hypoplasia  (IAGP)
exencephaly  (IAGP)
failure of eyelid fusion  (IAGP)
fused bronchial cartilage rings  (IAGP)
fused tracheal cartilage rings  (IAGP)
fusion of atlas and occipital bones  (IAGP)
fusion of atlas and odontoid process  (IAGP)
fusion of vertebral arches  (IAGP)
hydronephrosis  (IAGP)
impaired skin barrier function  (IAGP)
intracerebral hemorrhage  (IAGP)
iris coloboma  (IAGP)
male infertility  (IAGP)
microphthalmia  (IAGP)
midline facial cleft  (IAGP)
narrow eye opening  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
no abnormal phenotype detected  (IAGP)
oligodactyly  (IAGP)
open neural tube  (IAGP)
optic disk coloboma  (IAGP)
optic nerve coloboma  (IAGP)
otic capsule hypoplasia  (IAGP)
perinatal lethality  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
perinatal lethality, incomplete penetrance  (IAGP)
persistent cervical thymus  (IAGP)
persistent hyperplastic primary vitreous  (IAGP)
persistent right dorsal aorta  (IAGP)
persistent truncus arteriosis  (IAGP)
polydactyly  (IAGP)
postnatal growth retardation  (IAGP)
premature death  (IAGP)
prenatal lethality, complete penetrance  (IAGP)
prenatal lethality, incomplete penetrance  (IAGP)
reduced male fertility  (IAGP)
renal hypoplasia  (IAGP)
retina coloboma  (IAGP)
rib fusion  (IAGP)
right aortic arch  (IAGP)
rudimentary Mullerian ducts  (IAGP)
rudimentary Wolffian ducts  (IAGP)
scoliosis  (IAGP)
seminal vesicle atrophy  (IAGP)
shiny skin  (IAGP)
short fibula  (IAGP)
short frontal bone  (IAGP)
short snout  (IAGP)
short sublingual duct  (IAGP)
short trachea  (IAGP)
shortened head  (IAGP)
single kidney  (IAGP)
small otic vesicle  (IAGP)
small thyroid cartilage  (IAGP)
split cervical atlas  (IAGP)
split cervical axis  (IAGP)
squamous metaplasia of prostate gland  (IAGP)
squamous metaplasia of seminal vesicles  (IAGP)
thoracic vertebral transformation  (IAGP)
umbilical hernia  (IAGP)
ventral rotation of lens  (IAGP)
ventricle myocardium hypoplasia  (IAGP)
vertebral transformation  (IAGP)
References

Additional References at PubMed
PMID:1283441   PMID:1333403   PMID:1334737   PMID:1353971   PMID:1354638   PMID:1377062   PMID:1379621   PMID:1655630   PMID:1655807   PMID:1849812   PMID:1966045   PMID:2157210  
PMID:2157970   PMID:2161730   PMID:2544807   PMID:2556642   PMID:2737701   PMID:7590746   PMID:7601910   PMID:7607067   PMID:7607068   PMID:7626396   PMID:7631783   PMID:7720576  
PMID:7910825   PMID:7923367   PMID:7988794   PMID:8012111   PMID:8027572   PMID:8090775   PMID:8099268   PMID:8104059   PMID:8105479   PMID:8136307   PMID:8152920   PMID:8156902  
PMID:8157699   PMID:8174226   PMID:8199055   PMID:8251184   PMID:8276261   PMID:8314004   PMID:8383767   PMID:8388780   PMID:8394014   PMID:8397079   PMID:8463278   PMID:8530040  
PMID:8555112   PMID:8597630   PMID:8621489   PMID:8626453   PMID:8655595   PMID:8681798   PMID:8759116   PMID:8801169   PMID:8801176   PMID:8889548   PMID:9022057   PMID:9053308  
PMID:9075714   PMID:9097025   PMID:9116296   PMID:9142499   PMID:9153406   PMID:9240560   PMID:9376317   PMID:9415428   PMID:9442090   PMID:9464546   PMID:9548551   PMID:9590554  
PMID:9659935   PMID:9699718   PMID:9806918   PMID:9852056   PMID:9882496   PMID:9892176   PMID:10075839   PMID:10094571   PMID:10100049   PMID:10349636   PMID:10383391   PMID:10473117  
PMID:10559481   PMID:10604193   PMID:10610183   PMID:10684250   PMID:10748128   PMID:10753524   PMID:10842077   PMID:10862743   PMID:10869350   PMID:10919981   PMID:10938132   PMID:11042159  
PMID:11076861   PMID:11172439   PMID:11217851   PMID:11222375   PMID:11328745   PMID:11493525   PMID:11493527   PMID:11784046   PMID:11795391   PMID:11804787   PMID:11857788   PMID:12074552  
PMID:12093741   PMID:12114515   PMID:12360493   PMID:12464434   PMID:12466851   PMID:12477932   PMID:12486767   PMID:12520002   PMID:12588859   PMID:12665802   PMID:12824162   PMID:12834868  
PMID:12904583   PMID:14560020   PMID:14610273   PMID:14660544   PMID:14681479   PMID:14991612   PMID:15051476   PMID:15094780   PMID:15269172   PMID:15327771   PMID:15380252   PMID:15489334  
PMID:15528198   PMID:15618518   PMID:15734736   PMID:15741177   PMID:15766748   PMID:15778864   PMID:15831518   PMID:16141072   PMID:16141073   PMID:16207763   PMID:16397886   PMID:16574820  
PMID:16682494   PMID:16751185   PMID:16971476   PMID:17124491   PMID:17151600   PMID:17195188   PMID:17270348   PMID:17277115   PMID:17363914   PMID:17574023   PMID:17637747   PMID:17967808  
PMID:18202130   PMID:18233958   PMID:18287559   PMID:18393306   PMID:18439490   PMID:18539269   PMID:18561907   PMID:18703560   PMID:18799693   PMID:19006694   PMID:19229884   PMID:19389355  
PMID:19416500   PMID:19448158   PMID:19605690   PMID:19665987   PMID:19737349   PMID:19777591   PMID:19858186   PMID:19884340   PMID:20043900   PMID:20059953   PMID:20133701   PMID:20375256  
PMID:20410309   PMID:20439489   PMID:20557428   PMID:20634350   PMID:20843830   PMID:20857416   PMID:20932939   PMID:21122108   PMID:21267068   PMID:21722948   PMID:21731673   PMID:21779340  
PMID:21873635   PMID:21987218   PMID:21990348   PMID:22045663   PMID:22174793   PMID:22988430   PMID:23097316   PMID:23136256   PMID:23650387   PMID:23798555   PMID:24074870   PMID:24357724  
PMID:24383846   PMID:24459144   PMID:24569880   PMID:24586749   PMID:24610012   PMID:24733397   PMID:24952961   PMID:25173565   PMID:25251699   PMID:25546009   PMID:25654255   PMID:25800721  
PMID:25858458   PMID:26205250   PMID:26427057   PMID:26843326   PMID:27445154   PMID:27693352   PMID:28087565   PMID:28128212   PMID:28154153   PMID:28274610   PMID:28715412   PMID:28778663  
PMID:28933645   PMID:29031500   PMID:29093497   PMID:29848550   PMID:29986869   PMID:30040873   PMID:30166332   PMID:30587607   PMID:30737277   PMID:31072004   PMID:31243280   PMID:31562240  
PMID:32001436   PMID:32325033   PMID:33201874  


Genomics

Comparative Map Data
Rarg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915102,143,373 - 102,165,957 (-)NCBIGRCm39mm39
GRCm39 Ensembl15102,143,373 - 102,165,952 (-)Ensembl
GRCm3815102,234,938 - 102,257,522 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15102,234,938 - 102,257,517 (-)EnsemblGRCm38mm10GRCm38
MGSCv3715102,065,371 - 102,087,914 (-)NCBIGRCm37mm9NCBIm37
MGSCv3615102,062,974 - 102,085,313 (-)NCBImm8
Celera15104,391,902 - 104,414,975 (-)NCBICelera
Cytogenetic Map15F2NCBI
cM Map1557.4NCBI
RARG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1253,210,567 - 53,232,980 (-)EnsemblGRCh38hg38GRCh38
GRCh381253,210,569 - 53,232,231 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371253,604,353 - 53,625,993 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361251,890,620 - 51,912,303 (-)NCBINCBI36hg18NCBI36
Build 341251,890,620 - 51,912,247NCBI
Celera1253,252,956 - 53,274,263 (-)NCBI
Cytogenetic Map12q13.13NCBI
HuRef1250,646,458 - 50,668,146 (-)NCBIHuRef
CHM1_11253,570,785 - 53,592,447 (-)NCBICHM1_1
Rarg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27133,367,833 - 133,390,301 (-)NCBImRatBN7.2
Rnor_6.0 Ensembl7143,839,980 - 143,863,186 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.07143,840,739 - 143,863,206 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.07141,637,841 - 141,660,460 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47140,991,447 - 141,014,108 (-)NCBIRGSC3.4rn4RGSC3.4
Celera7129,801,582 - 129,823,782 (-)NCBICelera
Cytogenetic Map7q36NCBI
Rarg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955458480,070 - 501,356 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955458480,257 - 501,172 (-)NCBIChiLan1.0ChiLan1.0
RARG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11236,303,328 - 36,325,111 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1236,303,359 - 36,325,111 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01235,521,276 - 35,542,814 (+)NCBIMhudiblu_PPA_v0panPan3
RARG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1271,958,432 - 1,978,471 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl271,958,204 - 1,978,476 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2744,271,142 - 44,291,835 (-)NCBI
ROS_Cfam_1.0271,961,941 - 1,982,664 (+)NCBI
UMICH_Zoey_3.1271,980,967 - 2,000,875 (+)NCBI
UNSW_CanFamBas_1.0271,965,173 - 1,985,840 (+)NCBI
UU_Cfam_GSD_1.02744,671,821 - 44,692,522 (-)NCBI
Rarg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494562,640,418 - 62,661,874 (+)NCBI
SpeTri2.0NW_00493651210,502,954 - 10,524,796 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RARG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl518,436,267 - 18,458,625 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1518,436,267 - 18,458,625 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2518,869,535 - 18,878,967 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RARG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11149,319,104 - 49,340,725 (-)NCBI
ChlSab1.1 Ensembl1149,319,839 - 49,328,656 (-)Ensembl
Vero_WHO_p1.0NW_023666037196,719,056 - 196,740,773 (+)NCBI
Rarg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249041,255,854 - 1,277,946 (-)NCBI

Position Markers
AI385767  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3815102,234,992 - 102,235,126UniSTSGRCm38
MGSCv3715102,065,423 - 102,065,557UniSTSGRCm37
Celera15104,391,954 - 104,392,088UniSTS
Cytogenetic Map15E-F3UniSTS
Whitehead/MRC_RH15904.09UniSTS
M34476  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3815102,235,811 - 102,235,898UniSTSGRCm38
MGSCv3715102,066,242 - 102,066,329UniSTSGRCm37
Celera15104,392,773 - 104,392,860UniSTS
Cytogenetic Map15E-F3UniSTS
Whitehead/MRC_RH15904.09UniSTS
Rarg  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv3715102,065,530 - 102,066,428UniSTSGRCm37
MGSCv3715102,066,306 - 102,066,482UniSTSGRCm37
Celera15104,392,061 - 104,392,959UniSTS
Celera15104,392,837 - 104,393,013UniSTS
cM Map1557.4UniSTS
GDB:677651  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3815102,235,011 - 102,235,336UniSTSGRCm38
MGSCv3715102,065,442 - 102,065,767UniSTSGRCm37
Celera15104,391,973 - 104,392,298UniSTS
Cytogenetic Map15E-F3UniSTS
Rarg  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv3715102,066,306 - 102,066,482UniSTSGRCm37
Celera15104,392,837 - 104,393,013UniSTS
Cytogenetic Map15E-F3UniSTS
cM Map1557.4UniSTS
Rarg  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15E-F3UniSTS
Rarg  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15E-F3UniSTS
Rarg  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3815102,235,099 - 102,235,997UniSTSGRCm38
MGSCv3715102,065,530 - 102,066,428UniSTSGRCm37
Celera15104,392,061 - 104,392,959UniSTS
Cytogenetic Map15E-F3UniSTS
Rarg  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15E-F3UniSTS
cM Map1557.4UniSTS
Rarg  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15E-F3UniSTS
Rarg  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15E-F3UniSTS
Rarg  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15E-F3UniSTS
Rarg  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3815102,235,875 - 102,236,051UniSTSGRCm38
MGSCv3715102,066,306 - 102,066,482UniSTSGRCm37
Celera15104,392,837 - 104,393,013UniSTS
Cytogenetic Map15E-F3UniSTS
cM Map1557.4UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402117102988123Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578270103517472Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556323312103517472Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564434485103517472Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570461452104043685Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570465070104043685Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570465070104043685Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572498466104043685Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573545941104043685Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577629711104043685Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78716903102993272Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578716903102993272Mouse
14928306Manh79_mmandible shape 79 (mouse)1578949676104043685Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1579000000104043685Mouse
10402490Dipa5_mdrug induced psychomotor activation 5 (mouse)Not determined1579265530104043685Mouse
4141897Imrfq2_mimmune response to Factor IX QTL 2 (mouse)Not determined80011059104043685Mouse
1301284Cosz3_mcocaine seizure 3 (mouse)Not determined1580415753104043685Mouse
4141902Cia37_mcollagen induced arthritis 37 (mouse)Not determined1580987052104043685Mouse
1300974Pgia9_mproteoglycan induced arthritis 9 (mouse)Not determined1580987052104043685Mouse
4141511Gdcr1_mglycerolphosphate dehydrogenase regulator 1 (mouse)Not determined82717593104043685Mouse
1357614Bmca_mbile mucin accumulation (mouse)Not determined1585988005104043685Mouse
11530037Sluc34a_msusceptibility to lung cancer 34a (mouse)1585988005104043685Mouse
11530038Sluc34b_msusceptibility to lung cancer 34b (mouse)1585988005104043685Mouse
1301918Skull22_mskull morphology 22 (mouse)Not determined1585993114104043685Mouse
1301764Chab4_mcholesterol absorption 4 (mouse)Not determined1586751919104043685Mouse
4141581Dshv1_mdorsal hippocampal volume 1 (mouse)Not determined92890759103517472Mouse
14700689Carg5_mCandida albicans resistance gene 5 (mouse)1597800000103100000Mouse
11528547Sluc34_msusceptibility to lung cancer 34 (mouse)1597987052102988123Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2005
Count of miRNA genes:553
Interacting mature miRNAs:683
Transcripts:ENSMUST00000043172, ENSMUST00000063339, ENSMUST00000124224, ENSMUST00000130204, ENSMUST00000135466, ENSMUST00000155563
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001042727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006520650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC123791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC163291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI529497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC012923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE944393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX238066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M32068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M32069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M32070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M32071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M32072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M32073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M34475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M34476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X15848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000043172   ⟹   ENSMUSP00000048838
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl15102,234,938 - 102,257,517 (-)Ensembl
RefSeq Acc Id: ENSMUST00000063339   ⟹   ENSMUSP00000067266
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl15102,234,940 - 102,246,500 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124224
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl15102,241,943 - 102,245,231 (-)Ensembl
RefSeq Acc Id: ENSMUST00000130204   ⟹   ENSMUSP00000155670
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl15102,241,939 - 102,243,589 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135466   ⟹   ENSMUSP00000118615
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl15102,239,989 - 102,257,349 (-)Ensembl
RefSeq Acc Id: ENSMUST00000155563   ⟹   ENSMUSP00000155448
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl15102,241,943 - 102,250,346 (-)Ensembl
RefSeq Acc Id: ENSMUST00000230330
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl15102,251,149 - 102,252,640 (-)Ensembl
RefSeq Acc Id: NM_001042727   ⟹   NP_001036192
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915102,143,373 - 102,154,935 (-)NCBI
GRCm3815102,234,938 - 102,246,500 (-)NCBI
MGSCv3715102,065,371 - 102,087,914 (-)RGD
Celera15104,391,900 - 104,415,014 (-)NCBI
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_011244   ⟹   NP_035374
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915102,143,373 - 102,165,957 (-)NCBI
GRCm3815102,234,938 - 102,257,522 (-)NCBI
MGSCv3715102,065,371 - 102,087,914 (-)RGD
Celera15104,391,900 - 104,415,014 (-)NCBI
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006520650   ⟹   XP_006520713
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915102,143,373 - 102,165,957 (-)NCBI
GRCm3815102,234,938 - 102,257,522 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_035374   ⟸   NM_011244
- Peptide Label: isoform 1
- UniProtKB: P18911 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001036192   ⟸   NM_001042727
- Peptide Label: isoform 2
- UniProtKB: P18911 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006520713   ⟸   XM_006520650
- Peptide Label: isoform X1
- UniProtKB: P18911 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000155670   ⟸   ENSMUST00000130204
RefSeq Acc Id: ENSMUSP00000118615   ⟸   ENSMUST00000135466
RefSeq Acc Id: ENSMUSP00000067266   ⟸   ENSMUST00000063339
RefSeq Acc Id: ENSMUSP00000155448   ⟸   ENSMUST00000155563
RefSeq Acc Id: ENSMUSP00000048838   ⟸   ENSMUST00000043172
Protein Domains
NR LBD   Nuclear receptor

Promoters
RGD ID:6826409
Promoter ID:MM_KWN:19834
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000072434
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3615102,073,696 - 102,074,787 (-)MPROMDB
RGD ID:6826408
Promoter ID:MM_KWN:19835
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_2Hour,   Brain,   Kidney,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000072433
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3615102,075,786 - 102,076,286 (-)MPROMDB
RGD ID:6826405
Promoter ID:MM_KWN:19836
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000072431
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3615102,076,756 - 102,077,922 (-)MPROMDB
RGD ID:6826407
Promoter ID:MM_KWN:19837
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell,   Kidney,   Lung
Transcripts:OTTMUST00000072432
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3615102,080,421 - 102,081,007 (-)MPROMDB
RGD ID:6826411
Promoter ID:MM_KWN:19838
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000072430,   OTTMUST00000081083
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3615102,087,526 - 102,088,787 (-)MPROMDB
RGD ID:8685186
Promoter ID:EPDNEW_M20623
Type:initiation region
Name:Rarg_1
Description:Mus musculus retinoic acid receptor, gamma , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20624  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3815102,246,471 - 102,246,531EPDNEW
RGD ID:8685188
Promoter ID:EPDNEW_M20624
Type:multiple initiation site
Name:Rarg_2
Description:Mus musculus retinoic acid receptor, gamma , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20623  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3815102,257,456 - 102,257,516EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:97858 AgrOrtholog
Ensembl Genes ENSMUSG00000001288 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000048838 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000067266 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000118615 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000043172 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000063339 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000135466 UniProtKB/TrEMBL
Gene3D-CATH 1.10.565.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.50.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro NHR-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd UniProtKB/Swiss-Prot
  Nuclear_hrmn_rcpt UniProtKB/Swiss-Prot
  Retinoic_acid_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_hrmn_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19411 UniProtKB/Swiss-Prot
MGD MGI:97858 ENTREZGENE
NCBI Gene 19411 ENTREZGENE
Pfam Hormone_recep UniProtKB/Swiss-Prot
  zf-C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rarg PhenoGen
PRINTS RETNOICACIDR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STRDHORMONER UniProtKB/Swiss-Prot
  STROIDFINGER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/Swiss-Prot
  NUCLEAR_REC_DBD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HOLI UniProtKB/Swiss-Prot
  ZnF_C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48508 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3YZY4_MOUSE UniProtKB/TrEMBL
  P18911 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary P20787 UniProtKB/Swiss-Prot
  Q3UG86 UniProtKB/Swiss-Prot
  Q62149 UniProtKB/Swiss-Prot
  Q91VK5 UniProtKB/Swiss-Prot
  Q91YX2 UniProtKB/Swiss-Prot