Ppargc1b (peroxisome proliferative activated receptor, gamma, coactivator 1 beta) - Rat Genome Database

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Gene: Ppargc1b (peroxisome proliferative activated receptor, gamma, coactivator 1 beta) Mus musculus
Analyze
Symbol: Ppargc1b
Name: peroxisome proliferative activated receptor, gamma, coactivator 1 beta
RGD ID: 1331978
MGI Page MGI
Description: Predicted to enable AF-2 domain binding activity; nuclear estrogen receptor binding activity; and nuclear receptor coactivator activity. Involved in several processes, including bone trabecula formation; positive regulation of bone resorption; and regulation of DNA-templated transcription. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of mediator complex. Predicted to be active in nucleus. Is expressed in brown fat; central nervous system; heart; and sensory organ. Human ortholog(s) of this gene implicated in obesity. Orthologous to human PPARGC1B (PPARG coactivator 1 beta).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4631412G21Rik; ERR ligand 1; Perc; peroxisome proliferator-activated receptor gamma coactivator 1 beta; peroxisome proliferator-activated receptor gamma coactivator 1-beta; PGC-1-beta; PGC-1beta; PGC-1beta/ERRL1; PPAR gamma coactivator-1beta protein; PPAR-gamma coactivator 1-beta; PPARGC-1-beta
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391861,424,516 - 61,533,846 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1861,431,207 - 61,533,502 (-)EnsemblGRCm39 Ensembl
GRCm381861,291,445 - 61,400,756 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1861,298,136 - 61,400,431 (-)EnsemblGRCm38mm10GRCm38
MGSCv371861,457,790 - 61,560,085 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361861,423,505 - 61,525,800 (-)NCBIMGSCv36mm8
Celera1862,581,981 - 62,683,996 (-)NCBICelera
Cytogenetic Map18E1NCBI
cM Map1834.41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(R)-lipoic acid  (ISO)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (EXP)
ammonium chloride  (ISO)
angiotensin II  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atorvastatin calcium  (EXP,ISO)
atrazine  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
ciguatoxin CTX1B  (EXP)
cisplatin  (ISO)
colforsin daropate hydrochloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (ISO)
diclofenac  (EXP)
diethyl maleate  (ISO)
dioxygen  (EXP,ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
duvoglustat  (EXP)
endosulfan  (ISO)
entinostat  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
etoposide  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
genistein  (EXP,ISO)
gentamycin  (ISO)
hydrogen peroxide  (ISO)
Ile(5)-angiotensin II  (ISO)
isoprenaline  (EXP)
ketoconazole  (ISO)
linoleic acid  (ISO)
lipoic acid  (ISO)
lipopolysaccharide  (EXP)
meldonium  (ISO)
menadione  (ISO)
methimazole  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
N-acetyl-L-cysteine  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (EXP)
N-methyl-4-phenylpyridinium  (EXP,ISO)
N-nitrosodiethylamine  (EXP,ISO)
oxaloacetic acid  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorooctanoic acid  (EXP)
phenobarbital  (EXP)
phosphatidylcholine  (EXP)
phosphatidylethanolamine  (EXP)
phytol  (EXP)
phytosterols  (EXP)
pirinixic acid  (EXP)
propiconazole  (EXP)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP,ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (ISO)
sulforaphane  (EXP)
sunitinib  (ISO)
T-2 toxin  (ISO)
tamoxifen  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
trans-piceid  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
Triptolide  (EXP)
tris(2-butoxyethyl) phosphate  (ISO)
tunicamycin  (EXP)
valproic acid  (ISO)
very-low-density lipoprotein triglyceride  (EXP)
vinclozolin  (ISO)
zearalenone  (ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal blood circulation  (IAGP)
abnormal brown adipose tissue morphology  (IAGP)
abnormal brown fat cell morphology  (IAGP)
abnormal fat cell morphology  (IAGP)
abnormal heart development  (IAGP)
abnormal heart left ventricle morphology  (IAGP)
abnormal metabolism  (IAGP)
abnormal mitochondrial morphology  (IAGP)
abnormal mitochondrial physiology  (IAGP)
abnormal muscle physiology  (IAGP)
abnormal myocardial fiber mitochondrial morphology  (IAGP)
abnormal myocardium layer morphology  (IAGP)
abnormal osteoclast differentiation  (IAGP)
abnormal oxidative phosphorylation  (IAGP)
abnormal pulmonary alveolus morphology  (IAGP)
abnormal respiratory electron transport chain  (IAGP)
abnormal skeletal muscle fiber mitochondrial morphology  (IAGP)
abnormal tricarboxylic acid cycle  (IAGP)
abnormal white adipose tissue morphology  (IAGP)
congestive heart failure  (IAGP)
decreased body weight  (IAGP)
decreased bone resorption  (IAGP)
decreased brown fat lipid droplet number  (IAGP)
decreased cardiac output  (IAGP)
decreased circulating cholesterol level  (IAGP)
decreased circulating free fatty acids level  (IAGP)
decreased circulating glucose level  (IAGP)
decreased circulating triglyceride level  (IAGP)
decreased gonadal fat pad weight  (IAGP)
decreased heart left ventricle weight  (IAGP)
decreased heart rate  (IAGP)
decreased locomotor activity  (IAGP)
decreased oxygen consumption  (IAGP)
decreased survivor rate  (IAGP)
decreased triglyceride level  (IAGP)
decreased white adipose tissue amount  (IAGP)
hepatic steatosis  (IAGP)
impaired adaptive thermogenesis  (IAGP)
impaired exercise endurance  (IAGP)
increased brown adipose tissue amount  (IAGP)
increased brown fat cell lipid droplet size  (IAGP)
increased circulating free fatty acids level  (IAGP)
increased circulating triglyceride level  (IAGP)
increased liver triglyceride level  (IAGP)
increased liver weight  (IAGP)
increased white fat cell size  (IAGP)
insulin resistance  (IAGP)
macrovesicular hepatic steatosis  (IAGP)
neonatal lethality, incomplete penetrance  (IAGP)
postnatal lethality  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
respiratory distress  (IAGP)
small heart  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Evidence of an association between genetic variation of the coactivator PGC-1beta and obesity. Andersen G, etal., J Med Genet. 2005 May;42(5):402-7.
2. Peroxisome proliferator-activated receptor-gamma coactivator-1 and insulin resistance: acute effect of fatty acids. Hoeks J, etal., Diabetologia. 2006 Oct;49(10):2419-26. Epub 2006 Aug 1.
3. Sepsis and glucocorticoids downregulate the expression of the nuclear cofactor PGC-1beta in skeletal muscle. Menconi MJ, etal., Am J Physiol Endocrinol Metab. 2010 Oct;299(4):E533-43. Epub 2010 Jul 20.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. Putative association of peroxisome proliferator-activated receptor gamma co-activator 1beta (PPARGC1B) polymorphism with Type 2 diabetes mellitus. Park KS, etal., Diabet Med. 2006 Jun;23(6):635-42.
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Effect of Creosote Bush-Derived NDGA on Expression of Genes Involved in Lipid Metabolism in Liver of High-Fructose Fed Rats: Relevance to NDGA Amelioration of Hypertriglyceridemia and Hepatic Steatosis. Zhang H, etal., PLoS One. 2015 Sep 22;10(9):e0138203. doi: 10.1371/journal.pone.0138203. eCollection 2015.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11733490   PMID:12470660   PMID:12477932   PMID:12678921   PMID:12734177   PMID:14530391   PMID:15680331   PMID:15782199  
PMID:16033648   PMID:16141072   PMID:16141073   PMID:16459311   PMID:16679291   PMID:16814729   PMID:17050673   PMID:17090215   PMID:17141629   PMID:17189205   PMID:17276355   PMID:17360356  
PMID:17550900   PMID:17618855   PMID:17671090   PMID:17932310   PMID:18483224   PMID:18628400   PMID:18974884   PMID:19075043   PMID:19252502   PMID:19578095   PMID:19906680   PMID:20211142  
PMID:20404331   PMID:20519122   PMID:20649970   PMID:20657826   PMID:20660060   PMID:20889132   PMID:21109195   PMID:21267068   PMID:21364124   PMID:21499715   PMID:21632884   PMID:21677750  
PMID:21732060   PMID:21799152   PMID:21873635   PMID:21966468   PMID:22080103   PMID:22087241   PMID:22351927   PMID:22586274   PMID:22713466   PMID:22771762   PMID:22923471   PMID:23133608  
PMID:23201126   PMID:23223635   PMID:23236286   PMID:23242472   PMID:23264620   PMID:23285128   PMID:23299802   PMID:23342106   PMID:23690091   PMID:23707060   PMID:23818290   PMID:24049736  
PMID:24337569   PMID:24366168   PMID:24621497   PMID:24662048   PMID:25066120   PMID:25071184   PMID:25288742   PMID:25348719   PMID:25495651   PMID:25698262   PMID:25859222   PMID:26159922  
PMID:26220403   PMID:26299309   PMID:26674215   PMID:26748475   PMID:26848154   PMID:26950361   PMID:27166947   PMID:27256596   PMID:27631411   PMID:27658772   PMID:27705798   PMID:27780821  
PMID:27913603   PMID:28158196   PMID:28159809   PMID:28270443   PMID:28291835   PMID:28857232   PMID:28860475   PMID:28919427   PMID:28949414   PMID:29197478   PMID:29514081   PMID:29688375  
PMID:29763629   PMID:30277821   PMID:30281809   PMID:30635067   PMID:30728459   PMID:30770439   PMID:30833469   PMID:30914453   PMID:31097699   PMID:31101737   PMID:31727907   PMID:31778152  
PMID:31907393   PMID:32266253   PMID:32325033   PMID:32433820   PMID:32602911   PMID:32732898   PMID:33060645   PMID:33712605   PMID:33820875   PMID:33888560   PMID:34029594   PMID:35238380  
PMID:35466996   PMID:36400401   PMID:36693621   PMID:38165941   PMID:38252822  


Genomics

Comparative Map Data
Ppargc1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391861,424,516 - 61,533,846 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1861,431,207 - 61,533,502 (-)EnsemblGRCm39 Ensembl
GRCm381861,291,445 - 61,400,756 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1861,298,136 - 61,400,431 (-)EnsemblGRCm38mm10GRCm38
MGSCv371861,457,790 - 61,560,085 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361861,423,505 - 61,525,800 (-)NCBIMGSCv36mm8
Celera1862,581,981 - 62,683,996 (-)NCBICelera
Cytogenetic Map18E1NCBI
cM Map1834.41NCBI
PPARGC1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385149,730,310 - 149,857,959 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5149,730,298 - 149,855,022 (+)EnsemblGRCh38hg38GRCh38
GRCh375149,109,873 - 149,234,585 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365149,090,057 - 149,207,474 (+)NCBINCBI36Build 36hg18NCBI36
Build 345149,090,056 - 149,207,460NCBI
Celera5145,191,258 - 145,315,947 (+)NCBICelera
Cytogenetic Map5q32NCBI
HuRef5144,256,984 - 144,381,544 (+)NCBIHuRef
CHM1_15148,542,243 - 148,667,243 (+)NCBICHM1_1
T2T-CHM13v2.05150,266,870 - 150,394,600 (+)NCBIT2T-CHM13v2.0
Ppargc1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81857,029,264 - 57,131,466 (-)NCBIGRCr8
mRatBN7.21854,758,891 - 54,861,103 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1854,758,902 - 54,861,194 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1856,852,399 - 56,954,689 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01857,567,002 - 57,669,290 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01855,382,768 - 55,484,982 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01856,626,725 - 56,650,524 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1856,626,712 - 56,728,968 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01855,857,439 - 55,880,661 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41857,277,749 - 57,301,024 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11857,349,991 - 57,451,796 (-)NCBI
Celera1852,911,177 - 52,934,708 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
Ppargc1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554154,644,998 - 4,757,093 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554154,638,057 - 4,756,885 (-)NCBIChiLan1.0ChiLan1.0
PPARGC1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24144,955,386 - 145,119,813 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15143,098,132 - 143,223,525 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05145,154,517 - 145,315,567 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15151,172,020 - 151,286,285 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5151,203,088 - 151,278,837 (+)Ensemblpanpan1.1panPan2
PPARGC1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1459,167,041 - 59,278,977 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl459,174,604 - 59,279,464 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha458,935,873 - 59,044,751 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0459,651,179 - 59,761,207 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl459,651,182 - 59,761,176 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1459,439,467 - 59,548,290 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0459,553,927 - 59,662,788 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0460,085,118 - 60,194,024 (-)NCBIUU_Cfam_GSD_1.0
Ppargc1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213143,518,121 - 143,624,571 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365045,099,470 - 5,198,584 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365045,099,334 - 5,198,279 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPARGC1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2150,823,373 - 150,919,376 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12150,823,338 - 150,924,871 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22157,649,522 - 157,739,519 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PPARGC1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12352,337,802 - 52,462,553 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2352,428,052 - 52,455,089 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603425,255,708 - 25,379,965 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppargc1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247749,056,322 - 9,174,388 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247749,056,138 - 9,178,645 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ppargc1b
3786 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:474
Count of miRNA genes:294
Interacting mature miRNAs:334
Transcripts:ENSMUST00000063307, ENSMUST00000075299, ENSMUST00000142134
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357603Mom3_mmodifier of Min 3 (mouse)Not determined181403002367098962Mouse
1300685Scc5_mcolon tumor susceptibility 5 (mouse)Not determined183198848065988629Mouse
1301500Szs4_mseizure susceptibility 4 (mouse)Not determined185497587385514143Mouse
1302109Sluc28_msusceptibility to lung cancer 28 (mouse)Not determined185993532190720763Mouse
15039381Ltgq8_mliver triglyceride QTL 8 (mouse)183820656972206569Mouse
12880428V125Dq14_mvitamin D active form serum level QTL 14 (mouse)185743307190720763Mouse
1558782Orgwq9_morgan weight QTL 9 (mouse)Not determined186127244882604728Mouse
27226720Tibw5_mtibia width 5, proximal, 10 week (mouse)185043306762633071Mouse
4142239Idd21.2_minsulin dependent diabetes susceptibility 21.2 (mouse)Not determined186127244874562414Mouse
1301400Lmr13_mleishmaniasis resistance 13 (mouse)Not determined182810938062109518Mouse
25823173Hrsq12_mhost response to SARS QTL 12, hemorrhage (mouse)182489588178339555Mouse
1302163Bmd16_mbone mineral density 16 (mouse)Not determined182966791463668060Mouse
15039383Mvlq5_mmicrovesicular liver lesion QTL 5 (mouse)183820656972206569Mouse
12050070Nabq2_mnasal bone morphology QTL 2 (mouse)183910367773103793Mouse
1302099Hdlq30_mHDL QTL 30 (mouse)Not determined185166830085668468Mouse
12880410V125Dq13_mvitamin D active form serum level QTL 13 (mouse)185643307190433071Mouse
1357690Vtbt19_mvertebral trabecular bone trait 19 (mouse)Not determined183309104367091221Mouse
11039494Ltpr8b_mLeishmania tropica response 8b (mouse)184687490380875042Mouse
11252137Modvl5_mmodifier of vacuolated lens 5 (mouse)185105215685052311Mouse
1302050Radpf4_mradiation pulmonary fibrosis 4 (mouse)Not determined185296615668778777Mouse
12910791Pwgrq8_mpre-weaning growth rate QTL 8 (mouse)185802139969349142Mouse
11039493Ltpr8d_mLeishmania tropica response 8d (mouse)184687490380875042Mouse
4142366Chlq10_mcirculating hormone level QTL 10 (mouse)Not determined183629102270291180Mouse
1357639Obsty4_mobesity 4 (mouse)Not determined183961991484638778Mouse
1301853Heal9_mwound healing/regeneration 9 (mouse)Not determined185280527686805416Mouse
38455998Cdtm1_mCD62L+ CD8 TM cells 1 (mouse)186013307280043215Mouse
12904745Carcdq2_mcardiac collagen deposition QTL 2 (mouse)184642328780423287Mouse
10412244Par5_mpulmonary adenoma resistance 5 (mouse)Not determined185166830085668468Mouse
15039386Mvlq4_mmacrovesicular liver lesion QTL 4 (mouse)183820656972206569Mouse
11049564Lmr29_mleishmaniasis resistance 29 (mouse)185918009290720763Mouse
1301353Lbw6_mlupus NZB x NZW 6 (mouse)Not determined185756233890720763Mouse
4141857Mhysq5_mmale hybrid sterility QTL 5 (mouse)Not determined2813060462130739Mouse
1357630Tgq1_mtriglyceride QTL 1 (mouse)Not determined185105215685052311Mouse
10412183Sstapa2_mSuseptibility to Staphylococus aureus infection 2 (mouse)Not determined185679463066952485Mouse
11039492Ltpr8a_mLeishmania tropica response 8a (mouse)185918009290720763Mouse
1301215Thcr_mT helper cell response (mouse)Not determined184513060468778777Mouse
4142443Pgis1_mproteoglycan induced spondylitis 1 (mouse)Not determined185329102276914293Mouse
4141132Eae18_mexperimental allergic encephalomyelitis susceptibility 18 (mouse)Not determined5759055982604728Mouse
4140971Mbmq1_mmale body mass QTL 1 (mouse)Not determined5799028190720763Mouse
11039495Ltpr8c_mLeishmania tropica response 8c (mouse)185918009290720763Mouse
12880412V125Dq12_mvitamin D active form serum level QTL 12 (mouse)183023306764233067Mouse
1301771Pcyts6_mplasmacytoma susceptibility 6 (mouse)Not determined183565863269658851Mouse
1301902Hrtfm4_mheart failure modifier 4 (mouse)Not determined184331112077311343Mouse
12880430Fgf23lq4_mFGF23 serum level QTL 4 (mouse)185643307190433071Mouse
1301103Pgia11_mproteoglycan induced arthritis 11 (mouse)Not determined185991418490720763Mouse
1558803W3q16_mweight 3 weeks QTL 16 (mouse)Not determined186127244881491831Mouse
15039384Liviq1_mliver inflammation QTL 1 (mouse)183820656972206569Mouse

Markers in Region
Ppargc1b  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map18E1UniSTS
cM Map18 UniSTS
UniSTS:237820  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381861,307,298 - 61,307,586UniSTSGRCm38
MGSCv371861,466,952 - 61,467,240UniSTSGRCm37
Celera1862,591,143 - 62,591,431UniSTS
Cytogenetic Map18E1UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000063307   ⟹   ENSMUSP00000069431
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1861,431,581 - 61,533,471 (-)Ensembl
GRCm38.p6 Ensembl1861,298,510 - 61,400,400 (-)Ensembl
RefSeq Acc Id: ENSMUST00000075299   ⟹   ENSMUSP00000074771
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1861,431,207 - 61,533,502 (-)Ensembl
GRCm38.p6 Ensembl1861,298,136 - 61,400,431 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142134
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1861,522,903 - 61,533,471 (-)Ensembl
GRCm38.p6 Ensembl1861,389,832 - 61,400,400 (-)Ensembl
RefSeq Acc Id: NM_001364996   ⟹   NP_001351925
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391861,424,516 - 61,533,483 (-)NCBI
GRCm381861,291,445 - 61,400,412 (-)NCBI
Sequence:
RefSeq Acc Id: NM_133249   ⟹   NP_573512
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391861,424,516 - 61,533,483 (-)NCBI
GRCm381861,291,445 - 61,400,412 (-)NCBI
MGSCv371861,457,790 - 61,560,085 (-)RGD
Celera1862,581,981 - 62,683,996 (-)RGD
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006525698   ⟹   XP_006525761
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391861,424,516 - 61,533,846 (-)NCBI
GRCm381861,291,445 - 61,400,756 (-)NCBI
Sequence:
RefSeq Acc Id: NP_573512   ⟸   NM_133249
- Peptide Label: isoform 1
- UniProtKB: Q8C1C0 (UniProtKB/Swiss-Prot),   Q8VHJ7 (UniProtKB/Swiss-Prot),   B2RWT8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006525761   ⟸   XM_006525698
- Peptide Label: isoform X1
- UniProtKB: B2RWT8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001351925   ⟸   NM_001364996
- Peptide Label: isoform 2
- UniProtKB: B2RWT8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000074771   ⟸   ENSMUST00000075299
RefSeq Acc Id: ENSMUSP00000069431   ⟸   ENSMUST00000063307
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8VHJ7-F1-model_v2 AlphaFold Q8VHJ7 1-1014 view protein structure

Promoters
RGD ID:13677946
Promoter ID:EPDNEW_M23122
Type:initiation region
Name:Ppargc1b_1
Description:Mus musculus peroxisome proliferative activated receptor, gamma,coactivator 1 beta , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381861,400,400 - 61,400,460EPDNEW
RGD ID:6829468
Promoter ID:MM_KWN:25425
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung
Transcripts:ENSMUST00000063307,   NM_133249,   OTTMUST00000059063
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361861,559,694 - 61,560,194 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2444934 AgrOrtholog
Ensembl Genes ENSMUSG00000033871 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000063307 ENTREZGENE
  ENSMUST00000063307.6 UniProtKB/Swiss-Prot
  ENSMUST00000075299 ENTREZGENE
  ENSMUST00000075299.13 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PGC-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PPARGC1B_RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:170826 UniProtKB/Swiss-Prot
MGD MGI:2444934 ENTREZGENE
NCBI Gene 170826 ENTREZGENE
PANTHER PTHR15528 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15528:SF12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ppargc1b PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B2RWT8 ENTREZGENE, UniProtKB/TrEMBL
  PRGC2_MOUSE UniProtKB/Swiss-Prot
  Q8C1C0 ENTREZGENE
  Q8VHJ7 ENTREZGENE
UniProt Secondary Q8C1C0 UniProtKB/Swiss-Prot