Ppargc1b (peroxisome proliferative activated receptor, gamma, coactivator 1 beta) - Rat Genome Database

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Gene: Ppargc1b (peroxisome proliferative activated receptor, gamma, coactivator 1 beta) Mus musculus
Analyze
Symbol: Ppargc1b
Name: peroxisome proliferative activated receptor, gamma, coactivator 1 beta
RGD ID: 1331978
MGI Page MGI
Description: Predicted to have AF-2 domain binding activity; estrogen receptor binding activity; and nuclear receptor coactivator activity. Involved in several processes, including bone trabecula formation; positive regulation of bone resorption; and positive regulation of cellular metabolic process. Predicted to localize to cytosol; mediator complex; and nucleoplasm. Is expressed in brown fat; central nervous system; and sensory organ. Human ortholog(s) of this gene implicated in obesity. Orthologous to human PPARGC1B (PPARG coactivator 1 beta); INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,2',4,4',5,5'-hexachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 4631412G21Rik; ERR ligand 1; Perc; peroxisome proliferator-activated receptor gamma coactivator 1 beta; peroxisome proliferator-activated receptor gamma coactivator 1-beta; PGC-1-beta; PGC-1beta; PGC-1beta/ERRL1; PPAR gamma coactivator-1beta protein; PPAR-gamma coactivator 1-beta; PPARGC-1-beta
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391861,424,516 - 61,533,846 (-)NCBIGRCm39mm39
GRCm39 Ensembl1861,431,207 - 61,533,502 (-)Ensembl
GRCm381861,291,445 - 61,400,756 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1861,298,136 - 61,400,431 (-)EnsemblGRCm38mm10GRCm38
MGSCv371861,457,790 - 61,560,085 (-)NCBIGRCm37mm9NCBIm37
MGSCv361861,423,505 - 61,525,800 (-)NCBImm8
Celera1862,581,981 - 62,683,996 (-)NCBICelera
Cytogenetic Map18E1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(R)-lipoic acid  (ISO)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (EXP)
ammonium chloride  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atorvastatin calcium  (EXP,ISO)
atrazine  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (EXP)
cadmium atom  (ISO)
carbon nanotube  (EXP)
ciguatoxin CTX1B  (EXP)
cisplatin  (ISO)
colforsin daropate hydrochloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (ISO)
diclofenac  (EXP)
diethyl maleate  (ISO)
dioxygen  (EXP,ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
duvoglustat  (EXP)
endosulfan  (ISO)
entinostat  (ISO)
ethanol  (EXP)
etoposide  (ISO)
formaldehyde  (ISO)
genistein  (EXP,ISO)
hydrogen peroxide  (ISO)
isoprenaline  (EXP)
linoleic acid  (ISO)
lipoic acid  (ISO)
lipopolysaccharide  (EXP)
meldonium  (ISO)
menadione  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (EXP)
N-methyl-4-phenylpyridinium  (EXP,ISO)
N-nitrosodiethylamine  (EXP,ISO)
oxaloacetic acid  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (EXP)
phosphatidylcholine  (EXP)
phosphatidylethanolamine  (EXP)
phytol  (EXP)
phytosterols  (EXP)
pirinixic acid  (EXP)
propiconazole  (EXP)
quercetin  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP,ISO)
sulforaphane  (EXP)
sunitinib  (ISO)
T-2 toxin  (ISO)
tamoxifen  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
trichostatin A  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
tunicamycin  (EXP)
valproic acid  (ISO)
very-low-density lipoprotein triglyceride  (EXP)
vinclozolin  (ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal blood circulation  (IAGP)
abnormal brown adipose tissue morphology  (IAGP)
abnormal brown fat cell morphology  (IAGP)
abnormal fat cell morphology  (IAGP)
abnormal heart development  (IAGP)
abnormal heart left ventricle morphology  (IAGP)
abnormal metabolism  (IAGP)
abnormal mitochondrial morphology  (IAGP)
abnormal mitochondrial physiology  (IAGP)
abnormal muscle physiology  (IAGP)
abnormal myocardium layer morphology  (IAGP)
abnormal osteoclast differentiation  (IAGP)
abnormal oxidative phosphorylation  (IAGP)
abnormal pulmonary alveolus morphology  (IAGP)
abnormal respiratory electron transport chain  (IAGP)
abnormal tricarboxylic acid cycle  (IAGP)
abnormal white adipose tissue morphology  (IAGP)
congestive heart failure  (IAGP)
decreased body weight  (IAGP)
decreased bone resorption  (IAGP)
decreased brown fat lipid droplet number  (IAGP)
decreased cardiac output  (IAGP)
decreased circulating cholesterol level  (IAGP)
decreased circulating free fatty acids level  (IAGP)
decreased circulating glucose level  (IAGP)
decreased circulating triglyceride level  (IAGP)
decreased gonadal fat pad weight  (IAGP)
decreased heart left ventricle weight  (IAGP)
decreased heart rate  (IAGP)
decreased oxygen consumption  (IAGP)
decreased survivor rate  (IAGP)
decreased triglyceride level  (IAGP)
decreased white adipose tissue amount  (IAGP)
hepatic steatosis  (IAGP)
hypoactivity  (IAGP)
impaired adaptive thermogenesis  (IAGP)
impaired exercise endurance  (IAGP)
increased brown adipose tissue amount  (IAGP)
increased brown fat cell lipid droplet size  (IAGP)
increased circulating free fatty acids level  (IAGP)
increased circulating triglyceride level  (IAGP)
increased liver triglyceride level  (IAGP)
increased liver weight  (IAGP)
increased white fat cell size  (IAGP)
insulin resistance  (IAGP)
macrovesicular hepatic steatosis  (IAGP)
neonatal lethality, incomplete penetrance  (IAGP)
postnatal lethality  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
respiratory distress  (IAGP)
small heart  (IAGP)
References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11733490   PMID:12470660   PMID:12477932   PMID:12678921   PMID:12734177   PMID:14530391   PMID:15680331   PMID:15782199  
PMID:16033648   PMID:16141072   PMID:16141073   PMID:16459311   PMID:16679291   PMID:16814729   PMID:17050673   PMID:17090215   PMID:17141629   PMID:17189205   PMID:17276355   PMID:17360356  
PMID:17550900   PMID:17618855   PMID:17671090   PMID:17932310   PMID:18483224   PMID:18628400   PMID:18974884   PMID:19075043   PMID:19252502   PMID:19578095   PMID:19906680   PMID:20211142  
PMID:20404331   PMID:20519122   PMID:20649970   PMID:20657826   PMID:20660060   PMID:20889132   PMID:21109195   PMID:21267068   PMID:21364124   PMID:21499715   PMID:21632884   PMID:21677750  
PMID:21732060   PMID:21799152   PMID:21873635   PMID:21966468   PMID:22080103   PMID:22087241   PMID:22351927   PMID:22586274   PMID:22713466   PMID:22771762   PMID:22923471   PMID:23133608  
PMID:23201126   PMID:23223635   PMID:23236286   PMID:23242472   PMID:23264620   PMID:23285128   PMID:23299802   PMID:23342106   PMID:23707060   PMID:23818290   PMID:24049736   PMID:24337569  
PMID:24366168   PMID:24621497   PMID:24662048   PMID:25066120   PMID:25071184   PMID:25288742   PMID:25348719   PMID:25495651   PMID:25698262   PMID:25859222   PMID:26159922   PMID:26220403  
PMID:26299309   PMID:26674215   PMID:26748475   PMID:26848154   PMID:26950361   PMID:27166947   PMID:27256596   PMID:27631411   PMID:27658772   PMID:27705798   PMID:27780821   PMID:27913603  
PMID:28158196   PMID:28159809   PMID:28270443   PMID:28291835   PMID:28857232   PMID:28860475   PMID:28919427   PMID:28949414   PMID:29197478   PMID:29514081   PMID:29688375   PMID:29763629  
PMID:30281809   PMID:30635067   PMID:30728459   PMID:30770439   PMID:30833469   PMID:30914453   PMID:31097699   PMID:31101737   PMID:31727907   PMID:31907393   PMID:32266253   PMID:32325033  
PMID:32602911   PMID:32732898   PMID:33060645  


Genomics

Comparative Map Data
Ppargc1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391861,424,516 - 61,533,846 (-)NCBIGRCm39mm39
GRCm39 Ensembl1861,431,207 - 61,533,502 (-)Ensembl
GRCm381861,291,445 - 61,400,756 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1861,298,136 - 61,400,431 (-)EnsemblGRCm38mm10GRCm38
MGSCv371861,457,790 - 61,560,085 (-)NCBIGRCm37mm9NCBIm37
MGSCv361861,423,505 - 61,525,800 (-)NCBImm8
Celera1862,581,981 - 62,683,996 (-)NCBICelera
Cytogenetic Map18E1NCBI
PPARGC1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5149,730,298 - 149,855,022 (+)EnsemblGRCh38hg38GRCh38
GRCh385149,730,302 - 149,857,861 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh375149,109,873 - 149,234,585 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365149,090,057 - 149,207,474 (+)NCBINCBI36hg18NCBI36
Build 345149,090,056 - 149,207,460NCBI
Celera5145,191,258 - 145,315,947 (+)NCBI
Cytogenetic Map5q32NCBI
HuRef5144,256,984 - 144,381,544 (+)NCBIHuRef
CHM1_15148,542,243 - 148,667,243 (+)NCBICHM1_1
Ppargc1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21854,758,891 - 54,861,103 (-)NCBI
Rnor_6.0 Ensembl1856,626,712 - 56,728,968 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01856,626,725 - 56,650,524 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01855,857,439 - 55,880,661 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41857,277,749 - 57,301,024 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11857,349,991 - 57,451,796 (-)NCBI
Celera1852,911,177 - 52,934,708 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
Ppargc1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554154,644,998 - 4,757,093 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554154,638,057 - 4,756,885 (-)NCBIChiLan1.0ChiLan1.0
PPARGC1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15151,172,020 - 151,286,285 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5151,203,088 - 151,278,837 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05145,154,517 - 145,315,567 (+)NCBIMhudiblu_PPA_v0panPan3
PPARGC1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1459,167,041 - 59,278,977 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl459,174,604 - 59,279,464 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha458,935,873 - 59,044,751 (-)NCBI
ROS_Cfam_1.0459,651,179 - 59,761,207 (-)NCBI
UMICH_Zoey_3.1459,439,467 - 59,548,290 (-)NCBI
UNSW_CanFamBas_1.0459,553,927 - 59,662,788 (-)NCBI
UU_Cfam_GSD_1.0460,085,118 - 60,194,024 (-)NCBI
Ppargc1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213143,518,121 - 143,624,571 (-)NCBI
SpeTri2.0NW_0049365045,099,334 - 5,198,279 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPARGC1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2150,823,373 - 150,919,378 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12150,823,338 - 150,924,871 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22157,649,522 - 157,739,519 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PPARGC1B
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12352,337,802 - 52,462,553 (+)NCBI
ChlSab1.1 Ensembl2352,428,052 - 52,455,089 (+)Ensembl
Ppargc1b
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247749,056,138 - 9,178,645 (+)NCBI

Position Markers
Ppargc1b  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map18E1UniSTS
cM Map18 UniSTS
UniSTS:237820  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381861,307,298 - 61,307,586UniSTSGRCm38
MGSCv371861,466,952 - 61,467,240UniSTSGRCm37
Celera1862,591,143 - 62,591,431UniSTS
Cytogenetic Map18E1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357603Mom3_mmodifier of Min 3 (mouse)Not determined181389696666965891Mouse
25823173Hrsq12_mhost response to SARS QTL 12, hemorrhage (mouse)182476282478296340Mouse
1301400Lmr13_mleishmaniasis resistance 13 (mouse)Not determined182797631361976451Mouse
4141857Mhysq5_mmale hybrid sterility QTL 5 (mouse)Not determined2799753761997672Mouse
1302163Bmd16_mbone mineral density 16 (mouse)Not determined182953484763534993Mouse
12880412V125Dq12_mvitamin D active form serum level QTL 12 (mouse)183010000064100000Mouse
1300685Scc5_mcolon tumor susceptibility 5 (mouse)Not determined183185541365855562Mouse
1357690Vtbt19_mvertebral trabecular bone trait 19 (mouse)Not determined183295797666958154Mouse
1301771Pcyts6_mplasmacytoma susceptibility 6 (mouse)Not determined183552556069525779Mouse
4142366Chlq10_mcirculating hormone level QTL 10 (mouse)Not determined183615795070158108Mouse
15039381Ltgq8_mliver triglyceride QTL 8 (mouse)183807349772073497Mouse
15039383Mvlq5_mmicrovesicular liver lesion QTL 5 (mouse)183807349772073497Mouse
15039384Liviq1_mliver inflammation QTL 1 (mouse)183807349772073497Mouse
15039386Mvlq4_mmacrovesicular liver lesion QTL 4 (mouse)183807349772073497Mouse
12050070Nabq2_mnasal bone morphology QTL 2 (mouse)183897060572970721Mouse
1357639Obsty4_mobesity 4 (mouse)Not determined183948686184620653Mouse
1301902Hrtfm4_mheart failure modifier 4 (mouse)Not determined184317804877178271Mouse
1301215Thcr_mT helper cell response (mouse)Not determined184499753768645706Mouse
12904745Carcdq2_mcardiac collagen deposition QTL 2 (mouse)184629021680290216Mouse
11039493Ltpr8d_mLeishmania tropica response 8d (mouse)184674183280741971Mouse
11039494Ltpr8b_mLeishmania tropica response 8b (mouse)184674183280741971Mouse
27226720Tibw5_mtibia width 5, proximal, 10 week (mouse)185030000062500000Mouse
1357630Tgq1_mtriglyceride QTL 1 (mouse)Not determined185091908584919240Mouse
11252137Modvl5_mmodifier of vacuolated lens 5 (mouse)185091908584919240Mouse
1302099Hdlq30_mHDL QTL 30 (mouse)Not determined185153522985535397Mouse
10412244Par5_mpulmonary adenoma resistance 5 (mouse)Not determined185153522985535397Mouse
1301853Heal9_mwound healing/regeneration 9 (mouse)Not determined185267220586672345Mouse
1302050Radpf4_mradiation pulmonary fibrosis 4 (mouse)Not determined185283308468645706Mouse
4142443Pgis1_mproteoglycan induced spondylitis 1 (mouse)Not determined185315795076826598Mouse
1301500Szs4_mseizure susceptibility 4 (mouse)Not determined185484280185496018Mouse
12880410V125Dq13_mvitamin D active form serum level QTL 13 (mouse)185630000090300000Mouse
12880430Fgf23lq4_mFGF23 serum level QTL 4 (mouse)185630000090300000Mouse
10412183Sstapa2_mSuseptibility to Staphylococus aureus infection 2 (mouse)Not determined185666155866819414Mouse
12880428V125Dq14_mvitamin D active form serum level QTL 14 (mouse)185730000090702639Mouse
1301353Lbw6_mlupus NZB x NZW 6 (mouse)Not determined185742926790702639Mouse
4141132Eae18_mexperimental allergic encephalomyelitis susceptibility 18 (mouse)Not determined5745748782586603Mouse
4140971Mbmq1_mmale body mass QTL 1 (mouse)Not determined5785721090702639Mouse
12910791Pwgrq8_mpre-weaning growth rate QTL 8 (mouse)185788832769216071Mouse
11039492Ltpr8a_mLeishmania tropica response 8a (mouse)185904702190702639Mouse
11039495Ltpr8c_mLeishmania tropica response 8c (mouse)185904702190702639Mouse
11049564Lmr29_mleishmaniasis resistance 29 (mouse)185904702190702639Mouse
1301103Pgia11_mproteoglycan induced arthritis 11 (mouse)Not determined185982648990702639Mouse
1302109Sluc28_msusceptibility to lung cancer 28 (mouse)Not determined185984762690702639Mouse
38455998Cdtm1_mCD62L+ CD8 TM cells 1 (mouse)186000000080000000Mouse
10412265Par7_mpulmonary adenoma resistance 7 (mouse)Not determined186113937667919240Mouse
4142239Idd21.2_minsulin dependent diabetes susceptibility 21.2 (mouse)Not determined186113937674429343Mouse
1558803W3q16_mweight 3 weeks QTL 16 (mouse)Not determined186113937681448616Mouse
1558782Orgwq9_morgan weight QTL 9 (mouse)Not determined186113937682586603Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:474
Count of miRNA genes:294
Interacting mature miRNAs:334
Transcripts:ENSMUST00000063307, ENSMUST00000075299, ENSMUST00000142134
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000063307   ⟹   ENSMUSP00000069431
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1861,298,510 - 61,400,400 (-)Ensembl
RefSeq Acc Id: ENSMUST00000075299   ⟹   ENSMUSP00000074771
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1861,298,136 - 61,400,431 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142134
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1861,389,832 - 61,400,400 (-)Ensembl
RefSeq Acc Id: NM_001364996   ⟹   NP_001351925
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391861,424,516 - 61,533,483 (-)NCBI
GRCm381861,291,445 - 61,400,412 (-)NCBI
Sequence:
RefSeq Acc Id: NM_133249   ⟹   NP_573512
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391861,424,516 - 61,533,483 (-)NCBI
GRCm381861,291,445 - 61,400,412 (-)NCBI
MGSCv371861,457,790 - 61,560,085 (-)RGD
Celera1862,581,981 - 62,683,996 (-)RGD
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006525698   ⟹   XP_006525761
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391861,424,516 - 61,533,846 (-)NCBI
GRCm381861,291,445 - 61,400,756 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_573512   ⟸   NM_133249
- Peptide Label: isoform 1
- UniProtKB: Q8VHJ7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006525761   ⟸   XM_006525698
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001351925   ⟸   NM_001364996
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000074771   ⟸   ENSMUST00000075299
RefSeq Acc Id: ENSMUSP00000069431   ⟸   ENSMUST00000063307
Protein Domains
RRM

Promoters
RGD ID:13677946
Promoter ID:EPDNEW_M23122
Type:initiation region
Name:Ppargc1b_1
Description:Mus musculus peroxisome proliferative activated receptor, gamma,coactivator 1 beta , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381861,400,400 - 61,400,460EPDNEW
RGD ID:6829468
Promoter ID:MM_KWN:25425
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung
Transcripts:ENSMUST00000063307,   NM_133249,   OTTMUST00000059063
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361861,559,694 - 61,560,194 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2444934 AgrOrtholog
Ensembl Genes ENSMUSG00000033871 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000069431 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000074771 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000063307 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000075299 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PGC-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PGC-1beta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PPARGC1B_RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:170826 UniProtKB/Swiss-Prot
MGD MGI:2444934 ENTREZGENE
NCBI Gene 170826 ENTREZGENE
PANTHER PTHR15528 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15528:SF12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ppargc1b PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B2RWT8_MOUSE UniProtKB/TrEMBL
  PRGC2_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q8C1C0 UniProtKB/Swiss-Prot