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ONTOLOGY REPORT - ANNOTATIONS


Term:bone trabecula formation
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Accession:GO:0060346 term browser browse the term
Definition:The process of creating a trabecula in the bone. A trabecula is a tissue element in the form of a small beam, strut or rod.
Synonyms:exact_synonym: bone trabeculation;   skeletal trabecula formation;   skeletal trabeculation
 related_synonym: bone trabecula biogenesis;   skeletal trabecula biogenesis



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bone trabecula formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col1a1 collagen type I alpha 1 chain acts_upstream_of_or_within ISO MGI:97009 (MGI:3710444|PMID:17440987) RGD PMID:17440987 MGI:3710444 NCBI chr10:79,883,622...79,900,625
Ensembl chr10:79,883,622...79,900,624
JBrowse link
G Fbn2 fibrillin 2 involved_in ISO (MGI:4836762|PMID:20855508) RGD PMID:20855508 MGI:4836762 NCBI chr18:51,499,737...51,703,976
Ensembl chr18:51,499,737...51,703,976
JBrowse link
G Mmp2 matrix metallopeptidase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:88467 (MGI:3710444|PMID:17440987)
Ensembl
RGD
PMID:17440987 GO_REF:0000107 MGI:3710444 NCBI chr19:14,154,657...14,182,870
Ensembl chr19:14,154,657...14,182,870
JBrowse link
G Msx2 msh homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1926381 (MGI:1355063|PMID:10742104)
Ensembl
RGD
PMID:10742104 GO_REF:0000107 MGI:1355063 NCBI chr17:11,097,214...11,102,879
Ensembl chr17:11,097,103...11,102,879
JBrowse link
G Ppargc1b PPARG coactivator 1 beta involved_in ISO (MGI:3838421|PMID:19252502) RGD PMID:19252502 MGI:3838421 NCBI chr18:54,758,891...54,861,103
Ensembl chr18:54,758,902...54,861,194
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3045799 (MGI:3040721|PMID:14976225)
Ensembl
RGD
PMID:14976225 GO_REF:0000107 MGI:3040721 NCBI chr16:68,575,763...68,613,905
Ensembl chr16:68,575,763...68,614,286
JBrowse link
G Thbs3 thrombospondin 3 acts_upstream_of_or_within ISO MGI:3581964 (MGI:3581317|PMID:15964815) RGD PMID:15964815 MGI:3581317 NCBI chr 2:174,621,788...174,633,594
Ensembl chr 2:174,621,812...174,633,594
JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO MGI:1931048 (MGI:5461755|PMID:22886301) RGD PMID:22886301 MGI:5461755 NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641
JBrowse link
G Wnt10b Wnt family member 10B acts_upstream_of_or_within ISO MGI:3582610 (MGI:3574150|PMID:15728361) RGD PMID:15728361 MGI:3574150 NCBI chr 7:129,922,088...129,927,892
Ensembl chr 7:129,922,088...129,927,892
JBrowse link
negative regulation of bone trabecula formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chad chondroadherin involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:5529270 (MGI:5525032|PMID:23755099)
Ensembl
RGD
PMID:23755099 GO_REF:0000107 MGI:5525032 NCBI chr10:79,512,170...79,515,941
Ensembl chr10:79,511,931...79,515,940
JBrowse link
G Cyp27b1 cytochrome P450, family 27, subfamily b, polypeptide 1 IMP RGD PMID:32231239 RGD:32716373 NCBI chr 7:62,869,340...62,876,242
Ensembl chr 7:62,871,297...62,876,241
JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in ISO (PMID:15539560) RGD PMID:15539560 NCBI chr 3:100,512,317...100,524,001
Ensembl chr 3:100,512,313...100,524,082
JBrowse link
G Vdr vitamin D receptor IMP RGD PMID:32231239 RGD:32716373 NCBI chr 7:128,987,981...129,037,677
Ensembl chr 7:128,987,981...129,037,677
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19390
    developmental process 6778
      anatomical structure formation involved in morphogenesis 1229
        trabecula formation 29
          bone trabecula formation 13
            negative regulation of bone trabecula formation 4
            positive regulation of bone trabecula formation 0
            regulation of bone trabecula formation + 4
Path 2
Term Annotations click to browse term
  biological_process 19390
    developmental process 6778
      anatomical structure development 6203
        multicellular organism development 5641
          system development 5310
            animal organ development 4070
              animal organ morphogenesis 1160
                trabecula formation 29
                  bone trabecula formation 13
                    negative regulation of bone trabecula formation 4
                    positive regulation of bone trabecula formation 0
                    regulation of bone trabecula formation + 4
paths to the root