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Pathways

ONTOLOGY REPORT - ANNOTATIONS


Term:bone trabecula formation
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Accession:GO:0060346 term browser browse the term
Definition:The process of creating a trabecula in the bone. A trabecula is a tissue element in the form of a small beam, strut or rod.
Synonyms:exact_synonym: bone trabeculation;   skeletal trabecula formation;   skeletal trabeculation
 related_synonym: bone trabecula biogenesis;   skeletal trabecula biogenesis



show annotations for term's descendants           Sort by:
bone trabecula formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col1a1 collagen, type I, alpha 1 acts_upstream_of_or_within IGI (MGI:3710444|PMID:17440987) MGI PMID:17440987 MGI:3710444 NCBI chr11:94,827,050...94,843,868
Ensembl chr11:94,827,050...94,843,868
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in IMP (MGI:5661140|PMID:22359666) MGI PMID:22359666 MGI:5661140 NCBI chr10:24,513,812...24,588,057
Ensembl chr10:24,513,812...24,588,057
JBrowse link
G Fbn2 fibrillin 2 involved_in IMP (MGI:4836762|PMID:20855508) BHF-UCL PMID:20855508 MGI:4836762 NCBI chr18:58,141,689...58,343,200
Ensembl chr18:58,141,695...58,343,559
JBrowse link
G Mmp2 matrix metallopeptidase 2 acts_upstream_of_or_within IGI (MGI:3710444|PMID:17440987) MGI PMID:17440987 MGI:3710444 NCBI chr 8:93,553,920...93,580,049
Ensembl chr 8:93,553,919...93,580,048
JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within IMP (MGI:1355063|PMID:10742104) MGI PMID:10742104 MGI:1355063 NCBI chr13:53,620,917...53,626,816
Ensembl chr13:53,620,920...53,627,110
JBrowse link
G Ppargc1b peroxisome proliferative activated receptor, gamma, coactivator 1 beta involved_in IMP (MGI:3838421|PMID:19252502) DFLAT PMID:19252502 MGI:3838421 NCBI chr18:61,424,516...61,533,846
Ensembl chr18:61,431,207...61,533,502
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within IMP (MGI:3040721|PMID:14976225) MGI PMID:14976225 MGI:3040721 NCBI chr 8:23,901,401...23,939,648
Ensembl chr 8:23,901,518...23,939,648
JBrowse link
G Thbs3 thrombospondin 3 acts_upstream_of_or_within IMP (MGI:3581317|PMID:15964815) MGI PMID:15964815 MGI:3581317 NCBI chr 3:89,122,470...89,134,148
Ensembl chr 3:89,122,487...89,134,144
JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within IMP (MGI:5461755|PMID:22886301) MGI PMID:22886301 MGI:5461755 NCBI chr17:46,327,919...46,343,303
Ensembl chr17:46,327,919...46,343,295
JBrowse link
G Wnt10b wingless-type MMTV integration site family, member 10B acts_upstream_of_or_within IMP (MGI:3574150|PMID:15728361) MGI PMID:15728361 MGI:3574150 NCBI chr15:98,668,593...98,676,093
Ensembl chr15:98,668,593...98,676,031
JBrowse link
negative regulation of bone trabecula formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chad chondroadherin acts_upstream_of_or_within IMP (MGI:5525032|PMID:23755099) MGI PMID:23755099 MGI:5525032 NCBI chr11:94,455,873...94,459,953
Ensembl chr11:94,455,873...94,459,953
JBrowse link
G Cyp27b1 cytochrome P450, family 27, subfamily b, polypeptide 1 involved_in ISO RGD
MGI
PMID:32231239 GO_REF:0000096 MGI:4417868 RGD:32716373 NCBI chr10:126,884,115...126,891,897
Ensembl chr10:126,884,119...126,888,875
JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:113,579,020...113,588,993
Ensembl chr 2:113,576,509...113,588,991
JBrowse link
G Vdr vitamin D (1,25-dihydroxyvitamin D3) receptor involved_in ISO RGD
MGI
PMID:32231239 GO_REF:0000096 MGI:4417868 RGD:32716373 NCBI chr15:97,752,308...97,806,177
Ensembl chr15:97,752,306...97,808,511
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28659
    developmental process 7316
      anatomical structure formation involved in morphogenesis 1402
        trabecula formation 30
          bone trabecula formation 14
            negative regulation of bone trabecula formation 4
            positive regulation of bone trabecula formation 0
            regulation of bone trabecula formation + 4
Path 2
Term Annotations click to browse term
  biological_process 28659
    developmental process 7316
      anatomical structure development 6792
        multicellular organism development 5393
          system development 4616
            skeletal system development 587
              skeletal system morphogenesis 270
                bone trabecula formation 14
                  negative regulation of bone trabecula formation 4
                  positive regulation of bone trabecula formation 0
                  regulation of bone trabecula formation + 4
paths to the root