Tbx4 (T-box 4) - Rat Genome Database

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Gene: Tbx4 (T-box 4) Mus musculus
Analyze
Symbol: Tbx4
Name: T-box 4
RGD ID: 1319186
MGI Page MGI
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including angiogenesis; embryonic limb morphogenesis; and lung development. Predicted to be part of chromatin. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; early conceptus; embryo mesenchyme; genitourinary system; and limb. Human ortholog(s) of this gene implicated in arthropathy and ischiocoxopodopatellar syndrome. Orthologous to human TBX4 (T-box transcription factor 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 3930401C23; T-box protein 4; T-box transcription factor TBX4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391185,777,193 - 85,806,923 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1185,777,248 - 85,806,923 (+)EnsemblGRCm39 Ensembl
GRCm381185,886,367 - 85,916,097 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1185,886,422 - 85,916,097 (+)EnsemblGRCm38mm10GRCm38
MGSCv371185,703,565 - 85,729,599 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361185,706,258 - 85,730,940 (+)NCBIMGSCv36mm8
Celera1195,517,399 - 95,543,455 (+)NCBICelera
Cytogenetic Map11CNCBI
cM Map1151.42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (IBA)
nucleus  (IBA)

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mutations in the human TBX4 gene cause small patella syndrome. Bongers EM, etal., Am J Hum Genet. 2004 Jun;74(6):1239-48. Epub 2004 Apr 21.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Large-scale screen for genes controlling mammalian embryogenesis, using high-throughput gene expression analysis in mouse embryos. Neidhardt L, etal., Mech Dev 2000 Nov;98(1-2):77-94.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Fgf10 is essential for limb and lung formation. Sekine K, etal., Nat Genet 1999 Jan;21(1):138-41.
10. A combined analysis of genomic and primary protein structure defines the phylogenetic relationship of new members if the T-box family. Wattler S, etal., Genomics 1998 Feb 15;48(1):24-33.
Additional References at PubMed
PMID:1375456   PMID:7688225   PMID:8798150   PMID:8853987   PMID:8878690   PMID:8954725   PMID:10049363   PMID:10101115   PMID:10349636   PMID:10542325   PMID:10864469   PMID:10945475  
PMID:11042159   PMID:11076746   PMID:11076861   PMID:11217851   PMID:12142027   PMID:12175489   PMID:12376111   PMID:12441290   PMID:12466305   PMID:12466851   PMID:12490567   PMID:12508227  
PMID:12668638   PMID:12736212   PMID:12736217   PMID:14697353   PMID:14727108   PMID:15136151   PMID:15618518   PMID:15621531   PMID:16141072   PMID:16141073   PMID:16380715   PMID:16556916  
PMID:16831833   PMID:16989801   PMID:17164415   PMID:17605791   PMID:17904116   PMID:18064676   PMID:18077221   PMID:18287559   PMID:18356246   PMID:18498097   PMID:18579682   PMID:18990706  
PMID:19097117   PMID:19109910   PMID:19168674   PMID:19228596   PMID:19464179   PMID:19995988   PMID:20059953   PMID:20152185   PMID:20182749   PMID:20211142   PMID:20412781   PMID:20975709  
PMID:21094155   PMID:21098569   PMID:21256124   PMID:21267068   PMID:21360789   PMID:21515253   PMID:21677750   PMID:21873635   PMID:21932311   PMID:21937598   PMID:22071103   PMID:22174793  
PMID:22223620   PMID:22411555   PMID:22421546   PMID:22438573   PMID:22678773   PMID:22833126   PMID:22876201   PMID:22921202   PMID:22952711   PMID:22966238   PMID:22972626   PMID:22988430  
PMID:23028455   PMID:23028704   PMID:23328398   PMID:23341776   PMID:23763947   PMID:23836893   PMID:24089201   PMID:24194600   PMID:24274029   PMID:24347445   PMID:24553287   PMID:24726282  
PMID:25152336   PMID:25395543   PMID:25453830   PMID:25848055   PMID:26027930   PMID:26093309   PMID:26238476   PMID:26439399   PMID:26632490   PMID:27400124   PMID:27626380   PMID:27748998  
PMID:28827394   PMID:29084951   PMID:29126155   PMID:29251627   PMID:29590628   PMID:30352852   PMID:30389913   PMID:30401915   PMID:32268095   PMID:32597756   PMID:32855415   PMID:34423345  
PMID:34671097   PMID:35876795   PMID:35914404   PMID:37524711  


Genomics

Comparative Map Data
Tbx4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391185,777,193 - 85,806,923 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1185,777,248 - 85,806,923 (+)EnsemblGRCm39 Ensembl
GRCm381185,886,367 - 85,916,097 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1185,886,422 - 85,916,097 (+)EnsemblGRCm38mm10GRCm38
MGSCv371185,703,565 - 85,729,599 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361185,706,258 - 85,730,940 (+)NCBIMGSCv36mm8
Celera1195,517,399 - 95,543,455 (+)NCBICelera
Cytogenetic Map11CNCBI
cM Map1151.42NCBI
TBX4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381761,452,422 - 61,485,110 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1761,452,404 - 61,485,110 (+)EnsemblGRCh38hg38GRCh38
GRCh371759,529,783 - 59,562,471 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361756,888,589 - 56,916,446 (+)NCBINCBI36Build 36hg18NCBI36
Build 341756,888,588 - 56,916,446NCBI
Celera1758,634,841 - 58,662,701 (+)NCBICelera
Cytogenetic Map17q23.2NCBI
HuRef1754,900,265 - 54,928,130 (+)NCBIHuRef
CHM1_11759,598,306 - 59,626,165 (+)NCBICHM1_1
T2T-CHM13v2.01762,321,267 - 62,353,953 (+)NCBIT2T-CHM13v2.0
Tbx4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81071,228,145 - 71,258,222 (+)NCBIGRCr8
mRatBN7.21070,730,686 - 70,760,829 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1070,731,163 - 70,760,825 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1075,351,118 - 75,380,785 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01074,855,915 - 74,885,582 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01070,320,562 - 70,350,228 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01073,331,864 - 73,362,784 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1073,333,119 - 73,362,783 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01073,235,103 - 73,265,118 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41074,136,416 - 74,166,080 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11074,154,279 - 74,179,007 (+)NCBI
Celera1069,654,749 - 69,684,469 (+)NCBICelera
Cytogenetic Map10q26NCBI
Tbx4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554512,501,827 - 2,533,136 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554512,491,525 - 2,532,948 (+)NCBIChiLan1.0ChiLan1.0
TBX4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21977,651,294 - 77,684,008 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11782,462,735 - 82,495,443 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01755,554,549 - 55,587,253 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11760,677,518 - 60,706,206 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1760,677,518 - 60,705,413 (+)Ensemblpanpan1.1panPan2
TBX4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1935,163,346 - 35,197,726 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl935,166,353 - 35,191,932 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha934,395,807 - 34,421,394 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0935,972,610 - 36,007,370 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl935,977,705 - 36,003,297 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1934,758,715 - 34,784,294 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0935,044,477 - 35,070,057 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0935,132,002 - 35,157,583 (-)NCBIUU_Cfam_GSD_1.0
Tbx4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560234,221,462 - 34,247,634 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364902,827,416 - 2,852,917 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364902,823,531 - 2,853,282 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TBX4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1236,802,354 - 36,834,327 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11236,803,355 - 36,830,321 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21238,224,618 - 38,257,155 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TBX4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11632,677,878 - 32,715,169 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1632,683,921 - 32,711,674 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660773,430,924 - 3,463,642 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tbx4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248712,366,823 - 2,390,269 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248712,365,836 - 2,390,269 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tbx4
737 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1557
Count of miRNA genes:339
Interacting mature miRNAs:413
Transcripts:ENSMUST00000000096, ENSMUST00000108045, ENSMUST00000108047
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117757387399377820Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
15092057Lgrme3_mlate growth rate, maternal effect 3 (mouse)118487732496629512Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
15092049Wsigrme3_mweek six growth rate, maternal effect 3 (mouse)118487732496629512Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1180890826101890826Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179813759104502698Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179156009107616472Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse

Markers in Region
D11Fpm19  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381185,894,488 - 85,894,713UniSTSGRCm38
MGSCv371185,707,990 - 85,708,215UniSTSGRCm37
Celera1195,521,849 - 95,522,074UniSTS
Cytogenetic Map11CUniSTS
cM Map1149.0UniSTS
D11Fpm18  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381185,891,504 - 85,891,727UniSTSGRCm38
MGSCv371185,705,006 - 85,705,229UniSTSGRCm37
Celera1195,518,840 - 95,519,063UniSTS
Cytogenetic Map11CUniSTS
cM Map1149.0UniSTS
D11Fpm21  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381185,909,552 - 85,909,760UniSTSGRCm38
MGSCv371185,723,054 - 85,723,262UniSTSGRCm37
Celera1195,536,906 - 95,537,114UniSTS
Cytogenetic Map11CUniSTS
cM Map1149.0UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000000096   ⟹   ENSMUSP00000000096
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1185,780,889 - 85,806,923 (+)Ensembl
GRCm38.p6 Ensembl1185,890,063 - 85,916,097 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108045   ⟹   ENSMUSP00000103680
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1185,787,591 - 85,806,921 (+)Ensembl
GRCm38.p6 Ensembl1185,896,765 - 85,916,095 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108047   ⟹   ENSMUSP00000103682
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1185,777,248 - 85,806,921 (+)Ensembl
GRCm38.p6 Ensembl1185,886,422 - 85,916,095 (+)Ensembl
RefSeq Acc Id: NM_011536   ⟹   NP_035666
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391185,777,193 - 85,806,923 (+)NCBI
GRCm381185,886,367 - 85,916,097 (+)NCBI
MGSCv371185,703,565 - 85,729,599 (+)RGD
Celera1195,517,399 - 95,543,455 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_172798   ⟹   NP_766386
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391185,787,591 - 85,806,923 (+)NCBI
GRCm381185,896,765 - 85,916,097 (+)NCBI
MGSCv371185,703,565 - 85,729,599 (+)RGD
Celera1195,517,399 - 95,543,455 (+)RGD
cM Map11 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_035666   ⟸   NM_011536
- Peptide Label: isoform a
- UniProtKB: B1AQT9 (UniProtKB/Swiss-Prot),   Q8R5F6 (UniProtKB/Swiss-Prot),   P70325 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_766386   ⟸   NM_172798
- Peptide Label: isoform b
- UniProtKB: Q8BSY3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000103680   ⟸   ENSMUST00000108045
RefSeq Acc Id: ENSMUSP00000103682   ⟸   ENSMUST00000108047
RefSeq Acc Id: ENSMUSP00000000096   ⟸   ENSMUST00000000096
Protein Domains
T-box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P70325-F1-model_v2 AlphaFold P70325 1-552 view protein structure

Promoters
RGD ID:6822294
Promoter ID:MM_KWN:8997
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:ENSMUST00000108047
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361185,699,696 - 85,700,196 (+)MPROMDB
RGD ID:6822293
Promoter ID:MM_KWN:8998
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:NM_011536
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361185,703,396 - 85,703,896 (+)MPROMDB
RGD ID:6848995
Promoter ID:MM_XEF:1221
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:NM_001030537,   NM_130914
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361185,703,946 - 85,704,446 (+)MPROMDB
RGD ID:8676000
Promoter ID:EPDNEW_M16031
Type:multiple initiation site
Name:Tbx4_1
Description:Mus musculus T-box 4 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16032  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381185,889,993 - 85,890,053EPDNEW
RGD ID:8676086
Promoter ID:EPDNEW_M16032
Type:initiation region
Name:Tbx4_2
Description:Mus musculus T-box 4 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16031  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381185,896,843 - 85,896,903EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:102556 AgrOrtholog
Ensembl Genes ENSMUSG00000000094 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000000096.12 UniProtKB/Swiss-Prot
  ENSMUST00000108045 ENTREZGENE
  ENSMUST00000108045.3 UniProtKB/TrEMBL
  ENSMUST00000108047 ENTREZGENE
  ENSMUST00000108047.8 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.820 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro p53-like_TF_DNA-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  T-box_DNA-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  T-box_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TF_T-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TF_T-box_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:21387 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:102556 ENTREZGENE
NCBI Gene 21387 ENTREZGENE
PANTHER PTHR11267 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  T-BOX TRANSCRIPTION FACTOR TBX4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam T-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tbx4 PhenoGen
PRINTS TBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE TBOX_1 UniProtKB/Swiss-Prot
  TBOX_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TBOX_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART TBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49417 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B1AQT9 ENTREZGENE
  P70325 ENTREZGENE
  Q8BSY3 ENTREZGENE, UniProtKB/TrEMBL
  Q8R5F6 ENTREZGENE
  TBX4_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary B1AQT9 UniProtKB/Swiss-Prot
  Q8R5F6 UniProtKB/Swiss-Prot