Ndst1 (N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1) - Rat Genome Database

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Gene: Ndst1 (N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1) Mus musculus
Analyze
Symbol: Ndst1
Name: N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
RGD ID: 736720
MGI Page MGI
Description: Exhibits deacetylase activity and sulfotransferase activity. Involved in several processes, including animal organ development; positive regulation of signal transduction; and protein sulfation. Predicted to localize to Golgi apparatus. Is expressed in several structures, including alimentary system; future brain; integumental system; nervous system; and respiratory system. Used to study DiGeorge syndrome; congenital diaphragmatic hernia; and newborn respiratory distress syndrome. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human NDST1 (N-deacetylase and N-sulfotransferase 1); PARTICIPATES IN heparan sulfate biosynthetic pathway; INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 1200015G06Rik; [Heparan sulfate]-glucosamine N-sulfotransferase 1; b2b2230C; b2b2230Clo; bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1; glucosaminyl N-deacetylase/N-sulfotransferase 1; heparan sulfate-N-deacetylase/N-sulfotransferase; Hs; HSNST; HSNST 1; Hsst; N-deacetylase/N-sulfotransferase-1; N-heparan sulfate sulfotransferase 1; N-HSST; N-HSST 1; Ndst; NDST-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391860,817,566 - 60,907,465 (-)NCBIGRCm39mm39
GRCm39 Ensembl1860,817,566 - 60,881,722 (-)Ensembl
GRCm381860,684,494 - 60,749,035 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1860,684,494 - 60,748,650 (-)EnsemblGRCm38mm10GRCm38
MGSCv371860,845,617 - 60,873,043 (-)NCBIGRCm37mm9NCBIm37
MGSCv361860,811,332 - 60,838,758 (-)NCBImm8
Celera1861,969,670 - 61,997,089 (-)NCBICelera
Cytogenetic Map18E1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal anterior commissure morphology  (IAGP)
abnormal brain commissure morphology  (IAGP)
abnormal brain development  (IAGP)
abnormal brain morphology  (IAGP)
abnormal CNS glial cell morphology  (IAGP)
abnormal cranium morphology  (IAGP)
abnormal diaphragm central tendon morphology  (IAGP)
abnormal diaphragm morphology  (IAGP)
abnormal diencephalon morphology  (IAGP)
abnormal eye development  (IAGP)
abnormal eye morphology  (IAGP)
abnormal face development  (IAGP)
abnormal facial morphology  (IAGP)
abnormal forebrain development  (IAGP)
abnormal forebrain morphology  (IAGP)
abnormal hepatocyte physiology  (IAGP)
abnormal hippocampal commissure morphology  (IAGP)
abnormal lacrimal gland development  (IAGP)
abnormal leukocyte adhesion  (IAGP)
abnormal leukocyte migration  (IAGP)
abnormal maxillary prominence morphology  (IAGP)
abnormal midbrain morphology  (IAGP)
abnormal septum transversum morphology  (IAGP)
abnormal surfactant secretion  (IAGP)
abnormal telencephalon morphology  (IAGP)
abnormal tendon cell morphology  (IAGP)
abnormal tendon collagen fibril morphology  (IAGP)
abnormal type II pneumocyte morphology  (IAGP)
abnormal vascular development  (IAGP)
abnormal viscerocranium morphology  (IAGP)
absent facial bone  (IAGP)
absent lacrimal glands  (IAGP)
absent mandible  (IAGP)
absent neurocranium  (IAGP)
absent olfactory bulb  (IAGP)
absent olfactory epithelium  (IAGP)
absent tongue  (IAGP)
anencephaly  (IEA)
anophthalmia  (IAGP)
aphakia  (IAGP)
atelectasis  (IAGP)
atrioventricular septal defect  (IEA)
cleft upper lip  (IAGP)
cyanosis  (IAGP)
decreased alveolar lamellar body number  (IAGP)
decreased angiogenesis  (IAGP)
decreased endothelial cell proliferation  (IAGP)
decreased fibroblast cell migration  (IAGP)
decreased inflammatory response  (IAGP)
delayed bone ossification  (IAGP)
diaphragmatic hernia  (IAGP)
facial cleft  (IAGP)
frontonasal prominence hypoplasia  (IAGP)
heart left ventricle hypertrophy  (IEA)
heart right ventricle hypertrophy  (IEA)
herniated liver  (IAGP)
heterotaxia  (IEA)
holoprosencephaly  (IAGP)
hydronephrosis  (IEA)
hypoxia  (IAGP)
impaired leukocyte tethering or rolling  (IAGP)
increased hindbrain apoptosis  (IAGP)
interrupted aortic arch  (IEA)
iris coloboma  (IAGP)
kidney cysts  (IEA)
lethality throughout fetal growth and development, incomplete penetrance  (IAGP)
lowered ear position  (IEA)
mandible hypoplasia  (IAGP)
maxillary shelf hypoplasia  (IAGP)
microphthalmia  (IAGP)
microstomia  (IEA)
neonatal lethality, complete penetrance  (IAGP)
omphalocele  (IEA)
perinatal lethality, complete penetrance  (IAGP)
persistent truncus arteriosis  (IEA)
pituitary gland hypoplasia  (IAGP)
prenatal lethality  (IAGP)
prenatal lethality, complete penetrance  (IAGP)
proboscis  (IEA)
respiratory distress  (IAGP)
respiratory failure  (IAGP)
right aortic arch  (IEA)
small snout  (IAGP)
thick pulmonary interalveolar septum  (IAGP)
thin diaphragm muscle  (IAGP)
thymus hypoplasia  (IEA)
vascular ring  (IEA)
References

Additional References at PubMed
PMID:7601448   PMID:8144627   PMID:8889548   PMID:9346953   PMID:9565617   PMID:9915799   PMID:10349636   PMID:10664446   PMID:10852901   PMID:10922068   PMID:11042159   PMID:11076861  
PMID:11087757   PMID:12070138   PMID:12460940   PMID:12477932   PMID:12590599   PMID:12676797   PMID:12692154   PMID:14610273   PMID:14681479   PMID:15292174   PMID:15319440   PMID:15944372  
PMID:16020517   PMID:16056228   PMID:16141072   PMID:16141073   PMID:16984905   PMID:17107998   PMID:17183530   PMID:17200715   PMID:17289920   PMID:17376755   PMID:17470635   PMID:18077586  
PMID:18337501   PMID:18385133   PMID:18479348   PMID:18487608   PMID:18845532   PMID:19299468   PMID:19710461   PMID:19805913   PMID:19889634   PMID:19966810   PMID:20129923   PMID:20206635  
PMID:20463901   PMID:20502530   PMID:20974861   PMID:21172016   PMID:21267068   PMID:21536023   PMID:21586278   PMID:21677750   PMID:21731486   PMID:21772054   PMID:21873635   PMID:22049073  
PMID:22298785   PMID:22345168   PMID:22555965   PMID:22745308   PMID:22791291   PMID:23060443   PMID:23360803   PMID:23676495   PMID:23924956   PMID:24101444   PMID:24355925   PMID:24493818  
PMID:24726386   PMID:24753163   PMID:25807483   PMID:26024086   PMID:26936875   PMID:27225479   PMID:27400128   PMID:29330473   PMID:29688404   PMID:30194334   PMID:30228991   PMID:31315930  
PMID:31896526   PMID:32201365   PMID:32515730   PMID:32664575  


Genomics

Comparative Map Data
Ndst1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391860,817,566 - 60,907,465 (-)NCBIGRCm39mm39
GRCm39 Ensembl1860,817,566 - 60,881,722 (-)Ensembl
GRCm381860,684,494 - 60,749,035 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1860,684,494 - 60,748,650 (-)EnsemblGRCm38mm10GRCm38
MGSCv371860,845,617 - 60,873,043 (-)NCBIGRCm37mm9NCBIm37
MGSCv361860,811,332 - 60,838,758 (-)NCBImm8
Celera1861,969,670 - 61,997,089 (-)NCBICelera
Cytogenetic Map18E1NCBI
NDST1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5150,485,818 - 150,558,211 (+)EnsemblGRCh38hg38GRCh38
GRCh385150,497,779 - 150,558,211 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh375149,877,341 - 149,937,773 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365149,880,623 - 149,917,966 (+)NCBINCBI36hg18NCBI36
Build 345149,880,622 - 149,917,966NCBI
Celera5145,968,756 - 146,018,856 (+)NCBI
Cytogenetic Map5q33.1NCBI
HuRef5145,034,217 - 145,084,242 (+)NCBIHuRef
CHM1_15149,320,110 - 149,370,203 (+)NCBICHM1_1
Ndst1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21854,136,887 - 54,199,545 (-)NCBI
Rnor_6.0 Ensembl1855,955,389 - 55,992,885 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01855,951,497 - 56,014,107 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01855,189,496 - 55,226,905 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41856,638,891 - 56,677,831 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11856,711,122 - 56,750,063 (-)NCBI
Celera1852,295,217 - 52,332,793 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
Ndst1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554153,999,473 - 4,060,998 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554154,017,142 - 4,078,927 (-)NCBIChiLan1.0ChiLan1.0
NDST1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15151,918,667 - 151,986,668 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5151,936,357 - 151,986,668 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05145,910,993 - 145,982,933 (+)NCBIMhudiblu_PPA_v0panPan3
NDST1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1458,580,231 - 58,639,750 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl458,532,148 - 58,640,191 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha458,347,429 - 58,405,535 (-)NCBI
ROS_Cfam_1.0459,061,802 - 59,119,959 (-)NCBI
UMICH_Zoey_3.1458,850,372 - 58,908,502 (-)NCBI
UNSW_CanFamBas_1.0458,966,408 - 59,022,929 (-)NCBI
UU_Cfam_GSD_1.0459,495,800 - 59,553,938 (-)NCBI
Ndst1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213142,839,583 - 142,921,891 (-)NCBI
SpeTri2.0NW_0049365044,413,549 - 4,495,933 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDST1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2151,489,521 - 151,522,751 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12151,433,925 - 151,525,909 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NDST1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12353,109,806 - 53,159,880 (+)NCBI
ChlSab1.1 Ensembl2353,123,222 - 53,155,016 (+)Ensembl
Vero_WHO_p1.0NW_02366603424,554,718 - 24,627,309 (-)NCBI
Ndst1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247749,758,459 - 9,821,309 (+)NCBI

Position Markers
UniSTS:237816  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381860,686,538 - 60,686,757UniSTSGRCm38
MGSCv371860,846,192 - 60,846,411UniSTSGRCm37
Celera1861,970,245 - 61,970,464UniSTS
Cytogenetic Map18D2UniSTS
UniSTS:224353  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381860,684,556 - 60,684,713UniSTSGRCm38
MGSCv371860,844,210 - 60,844,367UniSTSGRCm37
Celera1861,968,262 - 61,968,419UniSTS
Cytogenetic Map18D2UniSTS
Ndst1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map18D2UniSTS
cM MapUN UniSTS
cM Map18 UniSTS
Ndst1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map18D2UniSTS
cM MapUN UniSTS
cM Map18 UniSTS
Ndst1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map18D2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226723Tibw9_mtibia width 9, proximal, 16 week (mouse)18320000060800000Mouse
1558849W3q15_mweight 3 weeks QTL 15 (mouse)Not determined18504111961139571Mouse
1357603Mom3_mmodifier of Min 3 (mouse)Not determined181389696666965891Mouse
25823173Hrsq12_mhost response to SARS QTL 12, hemorrhage (mouse)182476282478296340Mouse
1301400Lmr13_mleishmaniasis resistance 13 (mouse)Not determined182797631361976451Mouse
4141857Mhysq5_mmale hybrid sterility QTL 5 (mouse)Not determined2799753761997672Mouse
1302163Bmd16_mbone mineral density 16 (mouse)Not determined182953484763534993Mouse
12880412V125Dq12_mvitamin D active form serum level QTL 12 (mouse)183010000064100000Mouse
1300685Scc5_mcolon tumor susceptibility 5 (mouse)Not determined183185541365855562Mouse
1357690Vtbt19_mvertebral trabecular bone trait 19 (mouse)Not determined183295797666958154Mouse
1301771Pcyts6_mplasmacytoma susceptibility 6 (mouse)Not determined183552556069525779Mouse
4142366Chlq10_mcirculating hormone level QTL 10 (mouse)Not determined183615795070158108Mouse
15039381Ltgq8_mliver triglyceride QTL 8 (mouse)183807349772073497Mouse
15039383Mvlq5_mmicrovesicular liver lesion QTL 5 (mouse)183807349772073497Mouse
15039384Liviq1_mliver inflammation QTL 1 (mouse)183807349772073497Mouse
15039386Mvlq4_mmacrovesicular liver lesion QTL 4 (mouse)183807349772073497Mouse
12050070Nabq2_mnasal bone morphology QTL 2 (mouse)183897060572970721Mouse
1357639Obsty4_mobesity 4 (mouse)Not determined183948686184620653Mouse
1301902Hrtfm4_mheart failure modifier 4 (mouse)Not determined184317804877178271Mouse
1301215Thcr_mT helper cell response (mouse)Not determined184499753768645706Mouse
12904745Carcdq2_mcardiac collagen deposition QTL 2 (mouse)184629021680290216Mouse
11039493Ltpr8d_mLeishmania tropica response 8d (mouse)184674183280741971Mouse
11039494Ltpr8b_mLeishmania tropica response 8b (mouse)184674183280741971Mouse
27226720Tibw5_mtibia width 5, proximal, 10 week (mouse)185030000062500000Mouse
1357630Tgq1_mtriglyceride QTL 1 (mouse)Not determined185091908584919240Mouse
11252137Modvl5_mmodifier of vacuolated lens 5 (mouse)185091908584919240Mouse
1302099Hdlq30_mHDL QTL 30 (mouse)Not determined185153522985535397Mouse
10412244Par5_mpulmonary adenoma resistance 5 (mouse)Not determined185153522985535397Mouse
1301853Heal9_mwound healing/regeneration 9 (mouse)Not determined185267220586672345Mouse
1302050Radpf4_mradiation pulmonary fibrosis 4 (mouse)Not determined185283308468645706Mouse
4142443Pgis1_mproteoglycan induced spondylitis 1 (mouse)Not determined185315795076826598Mouse
4141431Msmr2_mMSM lymphoma resistance 2 (mouse)Not determined5484280161105798Mouse
1301500Szs4_mseizure susceptibility 4 (mouse)Not determined185484280185496018Mouse
12880410V125Dq13_mvitamin D active form serum level QTL 13 (mouse)185630000090300000Mouse
12880430Fgf23lq4_mFGF23 serum level QTL 4 (mouse)185630000090300000Mouse
10412183Sstapa2_mSuseptibility to Staphylococus aureus infection 2 (mouse)Not determined185666155866819414Mouse
12880428V125Dq14_mvitamin D active form serum level QTL 14 (mouse)185730000090702639Mouse
1301353Lbw6_mlupus NZB x NZW 6 (mouse)Not determined185742926790702639Mouse
4141132Eae18_mexperimental allergic encephalomyelitis susceptibility 18 (mouse)Not determined5745748782586603Mouse
4140971Mbmq1_mmale body mass QTL 1 (mouse)Not determined5785721090702639Mouse
12910791Pwgrq8_mpre-weaning growth rate QTL 8 (mouse)185788832769216071Mouse
11039492Ltpr8a_mLeishmania tropica response 8a (mouse)185904702190702639Mouse
11039495Ltpr8c_mLeishmania tropica response 8c (mouse)185904702190702639Mouse
11049564Lmr29_mleishmaniasis resistance 29 (mouse)185904702190702639Mouse
1301103Pgia11_mproteoglycan induced arthritis 11 (mouse)Not determined185982648990702639Mouse
1302109Sluc28_msusceptibility to lung cancer 28 (mouse)Not determined185984762690702639Mouse
38455998Cdtm1_mCD62L+ CD8 TM cells 1 (mouse)186000000080000000Mouse

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir191mmu-miR-191-5pOncomiRDBexternal_infoNANA21947487

Predicted Target Of
Summary Value
Count of predictions:1616
Count of miRNA genes:671
Interacting mature miRNAs:858
Transcripts:ENSMUST00000169273
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001348100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001348101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001348102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001348103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001348146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC139759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC149216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF049894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF074926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF520867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI844370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC009663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000169273   ⟹   ENSMUSP00000126623
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1860,685,978 - 60,713,389 (-)Ensembl
RefSeq Acc Id: ENSMUST00000235795   ⟹   ENSMUSP00000158439
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1860,684,494 - 60,727,563 (-)Ensembl
RefSeq Acc Id: ENSMUST00000237070   ⟹   ENSMUSP00000157852
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1860,713,042 - 60,748,416 (-)Ensembl
RefSeq Acc Id: ENSMUST00000237572   ⟹   ENSMUSP00000157512
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1860,690,057 - 60,697,072 (-)Ensembl
RefSeq Acc Id: ENSMUST00000237783   ⟹   ENSMUSP00000158312
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1860,685,963 - 60,748,650 (-)Ensembl
RefSeq Acc Id: ENSMUST00000237885   ⟹   ENSMUSP00000157775
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1860,712,948 - 60,733,150 (-)Ensembl
RefSeq Acc Id: NM_001348100   ⟹   NP_001335029
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391860,817,566 - 60,881,492 (-)NCBI
GRCm381860,684,494 - 60,748,420 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001348101   ⟹   NP_001335030
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391860,817,566 - 60,879,818 (-)NCBI
GRCm381860,684,494 - 60,746,746 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001348102   ⟹   NP_001335031
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391860,817,566 - 60,866,213 (-)NCBI
GRCm381860,684,494 - 60,733,141 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001348103   ⟹   NP_001335032
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391860,817,566 - 60,860,638 (-)NCBI
GRCm381860,684,494 - 60,727,566 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001348146   ⟹   NP_001335075
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391860,834,506 - 60,881,737 (-)NCBI
GRCm381860,701,434 - 60,748,665 (-)NCBI
Sequence:
RefSeq Acc Id: NM_008306   ⟹   NP_032332
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391860,817,566 - 60,881,737 (-)NCBI
GRCm381860,684,494 - 60,748,665 (-)NCBI
MGSCv371860,845,617 - 60,873,043 (-)RGD
Celera1861,969,670 - 61,997,089 (-)RGD
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006525668   ⟹   XP_006525731
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391860,817,566 - 60,856,799 (-)NCBI
GRCm381860,684,494 - 60,723,732 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006525673   ⟹   XP_006525736
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391860,817,566 - 60,881,506 (-)NCBI
GRCm381860,684,494 - 60,748,438 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250340   ⟹   XP_030106200
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391860,817,566 - 60,866,556 (-)NCBI
GRCm381860,684,494 - 60,733,485 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250341   ⟹   XP_030106201
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391860,817,566 - 60,882,107 (-)NCBI
GRCm381860,684,494 - 60,749,035 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250342   ⟹   XP_030106202
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391860,817,566 - 60,865,695 (-)NCBI
GRCm381860,684,494 - 60,732,623 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160991   ⟹   XP_036016884
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391860,817,566 - 60,907,465 (-)NCBI
RefSeq Acc Id: XM_036160992   ⟹   XP_036016885
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391860,817,566 - 60,851,795 (-)NCBI
RefSeq Acc Id: XM_036160993   ⟹   XP_036016886
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391860,817,566 - 60,881,702 (-)NCBI
RefSeq Acc Id: XM_036160994   ⟹   XP_036016887
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391860,817,566 - 60,880,111 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001335029 (Get FASTA)   NCBI Sequence Viewer  
  NP_001335030 (Get FASTA)   NCBI Sequence Viewer  
  NP_001335031 (Get FASTA)   NCBI Sequence Viewer  
  NP_001335032 (Get FASTA)   NCBI Sequence Viewer  
  NP_001335075 (Get FASTA)   NCBI Sequence Viewer  
  NP_032332 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525731 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525736 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106200 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106201 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106202 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016884 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016885 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016886 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016887 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC17228 (Get FASTA)   NCBI Sequence Viewer  
  AAD15980 (Get FASTA)   NCBI Sequence Viewer  
  AAH66098 (Get FASTA)   NCBI Sequence Viewer  
  AAH79561 (Get FASTA)   NCBI Sequence Viewer  
  BAC29136 (Get FASTA)   NCBI Sequence Viewer  
  BAE27818 (Get FASTA)   NCBI Sequence Viewer  
  BAE41527 (Get FASTA)   NCBI Sequence Viewer  
  BAE42184 (Get FASTA)   NCBI Sequence Viewer  
  EDL09816 (Get FASTA)   NCBI Sequence Viewer  
  EDL09817 (Get FASTA)   NCBI Sequence Viewer  
  EDL09818 (Get FASTA)   NCBI Sequence Viewer  
  Q3UHN9 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_032332   ⟸   NM_008306
- Peptide Label: isoform 1
- UniProtKB: Q3UHN9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006525731   ⟸   XM_006525668
- Peptide Label: isoform X1
- UniProtKB: Q3UHN9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006525736   ⟸   XM_006525673
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_030106201   ⟸   XM_030250341
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001335029   ⟸   NM_001348100
- Peptide Label: isoform 1
- UniProtKB: Q3UHN9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001335030   ⟸   NM_001348101
- Peptide Label: isoform 1
- UniProtKB: Q3UHN9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030106200   ⟸   XM_030250340
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001335031   ⟸   NM_001348102
- Peptide Label: isoform 1
- UniProtKB: Q3UHN9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030106202   ⟸   XM_030250342
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001335032   ⟸   NM_001348103
- Peptide Label: isoform 1
- UniProtKB: Q3UHN9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001335075   ⟸   NM_001348146
- Peptide Label: isoform 2
- UniProtKB: Q3UHN9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000157852   ⟸   ENSMUST00000237070
RefSeq Acc Id: ENSMUSP00000158312   ⟸   ENSMUST00000237783
RefSeq Acc Id: ENSMUSP00000157775   ⟸   ENSMUST00000237885
RefSeq Acc Id: ENSMUSP00000157512   ⟸   ENSMUST00000237572
RefSeq Acc Id: ENSMUSP00000126623   ⟸   ENSMUST00000169273
RefSeq Acc Id: ENSMUSP00000158439   ⟸   ENSMUST00000235795
RefSeq Acc Id: XP_036016884   ⟸   XM_036160991
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036016886   ⟸   XM_036160993
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036016887   ⟸   XM_036160994
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036016885   ⟸   XM_036160992
- Peptide Label: isoform X1
Protein Domains
HSNSD   Sulfotransfer_1

Promoters
RGD ID:13677912
Promoter ID:EPDNEW_M23105
Type:initiation region
Name:Ndst1_2
Description:Mus musculus N-deacetylase/N-sulfotransferase 1 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23106  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381860,727,529 - 60,727,589EPDNEW
RGD ID:13677914
Promoter ID:EPDNEW_M23106
Type:initiation region
Name:Ndst1_1
Description:Mus musculus N-deacetylase/N-sulfotransferase 1 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23105  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381860,748,665 - 60,748,725EPDNEW
RGD ID:6829399
Promoter ID:MM_KWN:25400
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver,   Lung,   MEF_B6
Transcripts:UC008FAT.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361860,872,491 - 60,874,172 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:104719 AgrOrtholog
Ensembl Genes ENSMUSG00000054008 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000126623 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000157512 UniProtKB/TrEMBL
  ENSMUSP00000157775 UniProtKB/TrEMBL
  ENSMUSP00000157852 UniProtKB/TrEMBL
  ENSMUSP00000158312 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000158439 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000169273 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000235795 UniProtKB/TrEMBL
  ENSMUST00000237070 UniProtKB/TrEMBL
  ENSMUST00000237572 UniProtKB/TrEMBL
  ENSMUST00000237783 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000237885 UniProtKB/TrEMBL
InterPro Heparan_SO4_deacetylase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NST/OST UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sulfotransferase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:15531 UniProtKB/Swiss-Prot
MGD MGI:104719 ENTREZGENE
NCBI Gene 15531 ENTREZGENE
PANTHER PTHR10605 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam HSNSD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sulfotransfer_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ndst1 PhenoGen
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A494B9A5_MOUSE UniProtKB/TrEMBL
  A0A494B9V2_MOUSE UniProtKB/TrEMBL
  A0A494B9X7_MOUSE UniProtKB/TrEMBL
  A0A494BBA6_MOUSE UniProtKB/TrEMBL
  NDST1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary O70353 UniProtKB/Swiss-Prot
  Q3TBX3 UniProtKB/Swiss-Prot
  Q3TDS3 UniProtKB/Swiss-Prot
  Q8BZE5 UniProtKB/Swiss-Prot
  Q9R206 UniProtKB/Swiss-Prot