Pcgf2 (polycomb group ring finger 2) - Rat Genome Database

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Gene: Pcgf2 (polycomb group ring finger 2) Mus musculus
Analyze
Symbol: Pcgf2
Name: polycomb group ring finger 2
RGD ID: 1550113
MGI Page MGI
Description: Exhibits chromatin binding activity. Involved in several processes, including cellular response to hydrogen peroxide; chordate embryonic development; and negative regulation of apoptotic signaling pathway. Localizes to PcG protein complex; nuclear body; and sex chromatin. Is expressed in several structures, including adipose tissue; alimentary system; brain; eye; and genitourinary system. Orthologous to human PCGF2 (polycomb group ring finger 2); PARTICIPATES IN histone modification pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; benzo[a]pyrene; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: DNA-binding protein Mel-18; mel-1; mel-18; Mel1; Mel18; melanoma nuclear protein 18; polycomb group RING finger protein 2; ring finger protein 110; Rnf1; Rnf110; zfp-144; Zfp14; Zfp144; zinc finger protein 144
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391197,579,647 - 97,593,260 (-)NCBIGRCm39mm39
GRCm39 Ensembl1197,579,649 - 97,591,323 (-)Ensembl
GRCm381197,688,821 - 97,702,434 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1197,688,823 - 97,700,497 (-)EnsemblGRCm38mm10GRCm38
MGSCv371197,550,137 - 97,561,811 (-)NCBIGRCm37mm9NCBIm37
MGSCv361197,505,910 - 97,516,436 (-)NCBImm8
Celera11107,338,639 - 107,350,289 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1161.06NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (ISO)
nuclear body  (IDA)
nucleoplasm  (ISO,TAS)
nucleus  (IDA,ISO)
PcG protein complex  (IDA,ISO)
PRC1 complex  (IBA,ISO)
sex chromatin  (IDA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal axial skeleton morphology  (IAGP)
abnormal basioccipital bone morphology  (IAGP)
abnormal bone ossification  (IAGP)
abnormal brain morphology  (IAGP)
abnormal cervical atlas morphology  (IAGP)
abnormal craniofacial bone morphology  (IAGP)
abnormal dorsal aorta morphology  (IAGP)
abnormal exoccipital bone morphology  (IAGP)
abnormal first pharyngeal arch morphology  (IAGP)
abnormal hyoid bone morphology  (IAGP)
abnormal neural tube morphology  (IAGP)
abnormal notochord morphology  (IAGP)
abnormal occipital bone morphology  (IAGP)
abnormal odontoid process morphology  (IAGP)
abnormal optic eminence morphology  (IAGP)
abnormal rib joint morphology  (IAGP)
abnormal rib morphology  (IAGP)
abnormal scapula morphology  (IAGP)
abnormal second pharyngeal arch morphology  (IAGP)
abnormal skeleton morphology  (IAGP)
abnormal somatic mesoderm morphology  (IAGP)
abnormal somite development  (IAGP)
abnormal spleen morphology  (IEA)
abnormal sternocostal joint morphology  (IAGP)
abnormal sternum ossification  (IAGP)
abnormal supraoccipital bone morphology  (IAGP)
abnormal T-helper 2 physiology  (IAGP)
abnormal tail bud morphology  (IAGP)
abnormal testis morphology  (IEA)
abnormal thoracic cage morphology  (IAGP)
abnormal vertebrae morphology  (IAGP)
acromion hypoplasia  (IAGP)
asymmetric sternocostal joints  (IAGP)
cervical vertebral transformation  (IAGP)
cleft secondary palate  (IAGP)
decreased blood urea nitrogen level  (IEA)
decreased circulating cholesterol level  (IEA)
decreased circulating triglyceride level  (IEA)
decreased lymphocyte cell number  (IAGP)
decreased thymocyte number  (IAGP)
embryonic growth arrest  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
hindbrain hypoplasia  (IAGP)
increased neural tube apoptosis  (IAGP)
increased rib number  (IAGP)
lumbar vertebral transformation  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
perinatal lethality, incomplete penetrance  (IAGP)
postnatal growth retardation  (IAGP)
premature death  (IAGP)
prenatal lethality, complete penetrance  (IAGP)
preweaning lethality, complete penetrance  (IEA)
rib fusion  (IAGP)
sacral vertebral transformation  (IAGP)
scapular bone foramen  (IAGP)
small notochord  (IAGP)
small spleen  (IEA)
small testis  (IEA)
split exoccipital bone  (IAGP)
split notochord  (IAGP)
thoracic vertebral transformation  (IAGP)
vertebral transformation  (IAGP)
References

Additional References at PubMed
PMID:1412709   PMID:1991318   PMID:2246278   PMID:3017658   PMID:8219280   PMID:8521824   PMID:8597592   PMID:8625838   PMID:8889548   PMID:9009205   PMID:9153995   PMID:9252126  
PMID:9487388   PMID:9806630   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11124519   PMID:11217851   PMID:11290297   PMID:11471062   PMID:11520462   PMID:11750047   PMID:11812828  
PMID:11950896   PMID:12034499   PMID:12183370   PMID:12438698   PMID:12438746   PMID:12466851   PMID:12477932   PMID:12480532   PMID:14560011   PMID:14595010   PMID:14610273   PMID:15183898  
PMID:15489334   PMID:15525528   PMID:15589172   PMID:15728456   PMID:15741318   PMID:15964995   PMID:16024804   PMID:16141072   PMID:16141073   PMID:16359901   PMID:16604157   PMID:16687444  
PMID:16786585   PMID:16815646   PMID:17296600   PMID:17726103   PMID:17967808   PMID:18076574   PMID:18287559   PMID:18311137   PMID:18799693   PMID:19409954   PMID:19515240   PMID:19585519  
PMID:20059953   PMID:20471950   PMID:20808772   PMID:21059868   PMID:21402785   PMID:21674483   PMID:21677750   PMID:21873635   PMID:21970185   PMID:22325148   PMID:22634509   PMID:22988430  
PMID:23486062   PMID:24091011   PMID:24194600   PMID:24457600   PMID:25703348   PMID:27626380   PMID:28049731   PMID:28596365   PMID:28780076   PMID:28839133   PMID:29727681   PMID:31077711  


Genomics

Comparative Map Data
Pcgf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391197,579,647 - 97,593,260 (-)NCBIGRCm39mm39
GRCm39 Ensembl1197,579,649 - 97,591,323 (-)Ensembl
GRCm381197,688,821 - 97,702,434 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1197,688,823 - 97,700,497 (-)EnsemblGRCm38mm10GRCm38
MGSCv371197,550,137 - 97,561,811 (-)NCBIGRCm37mm9NCBIm37
MGSCv361197,505,910 - 97,516,436 (-)NCBImm8
Celera11107,338,639 - 107,350,289 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1161.06NCBI
PCGF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1738,733,898 - 38,749,817 (-)EnsemblGRCh38hg38GRCh38
GRCh381738,733,898 - 38,749,817 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371736,890,151 - 36,904,589 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361734,143,676 - 34,158,084 (-)NCBINCBI36hg18NCBI36
Build 341734,143,675 - 34,158,084NCBI
Celera1733,551,109 - 33,565,516 (-)NCBI
Cytogenetic Map17q12NCBI
HuRef1732,686,278 - 32,692,831 (-)NCBIHuRef
CHM1_11737,125,467 - 37,139,873 (-)NCBICHM1_1
Pcgf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21082,682,563 - 82,694,563 (-)NCBI
Rnor_6.0 Ensembl1085,632,819 - 85,636,902 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01085,631,829 - 85,642,591 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01085,419,176 - 85,429,596 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41086,439,109 - 86,443,193 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1081,439,228 - 81,443,310 (-)NCBICelera
Cytogenetic Map10q31NCBI
Pcgf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545113,817,559 - 13,832,653 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545113,817,559 - 13,822,342 (-)NCBIChiLan1.0ChiLan1.0
PCGF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11718,800,426 - 18,814,838 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1718,798,917 - 18,814,838 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01718,523,859 - 18,539,794 (+)NCBIMhudiblu_PPA_v0panPan3
PCGF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1923,488,862 - 23,499,769 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl923,488,857 - 23,499,549 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha922,961,069 - 22,973,073 (+)NCBI
ROS_Cfam_1.0924,284,656 - 24,295,561 (+)NCBI
UMICH_Zoey_3.1923,056,147 - 23,068,124 (+)NCBI
UNSW_CanFamBas_1.0923,317,255 - 23,328,170 (+)NCBI
UU_Cfam_GSD_1.0923,443,499 - 23,455,504 (+)NCBI
Pcgf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560222,924,271 - 22,936,014 (+)NCBI
SpeTri2.0NW_00493649014,139,125 - 14,150,377 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCGF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1223,362,654 - 23,375,775 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11223,362,631 - 23,375,779 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PCGF2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11667,447,181 - 67,461,829 (+)NCBI
ChlSab1.1 Ensembl1667,455,292 - 67,460,509 (+)Ensembl
Vero_WHO_p1.0NW_02366607738,445,118 - 38,459,452 (+)NCBI
Pcgf2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247953,942,868 - 3,952,325 (+)NCBI

Position Markers
AA955814  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381197,689,880 - 97,690,026UniSTSGRCm38
MGSCv371197,551,194 - 97,551,340UniSTSGRCm37
Celera11107,339,791 - 107,339,937UniSTS
Cytogenetic Map11C1-C3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170800372104800540Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170800372104800540Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170800372104800540Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170800372104800540Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172128823106128908Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172835299106835463Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172927789106927907Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172927789106927907Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177172953111173092Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177546357111546496Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177546357111546496Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117768304799486994Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177880152111880273Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179265183107725646Mouse
14746970Manh71_mmandible shape 71 (mouse)1179525431113525431Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179922933104611872Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1181000000102000000Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181683655115683810Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181683655115683810Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181919441115919441Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182486872116486994Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185954085119954085Mouse
15039374Adip29_madiposity 29 (mouse)1186717494120717494Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186717494120717494Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186717494120717494Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187600000126900000Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187611774121611872Mouse
1357631Motr1_mmodifier of tubby retinal degeneration 1 (mouse)Not determined1187800372103383289Mouse
1301491Abbp4_mA/J and C57BL/6 blood pressure 4 (mouse)Not determined118880876299190771Mouse
1301313Pas5a_mpulmonary adenoma susceptibility 5a (mouse)Not determined118907597898974942Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189978425122082543Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191713782122082543Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191713782122082543Mouse
10045617Heal26_mwound healing/regeneration 26 (mouse)Not determined1193048547112653728Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193338357122082543Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194172953118131898Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194300000119000000Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94546357118131898Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195513139122082543Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195513139122082543Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196246848122082543Mouse
1301535Pas5b_mpulmonary adenoma susceptibility 5b (mouse)Not determined1196285639108915558Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196919310122082543Mouse
1301153Estq3_mestradiol regulated response QTL 3 (mouse)Not determined119700686799436202Mouse
12910539Sstapa3_msuseptibility to Staphylococcus aureus infection 3 (mouse)1197006867110713165Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1686
Count of miRNA genes:519
Interacting mature miRNAs:609
Transcripts:ENSMUST00000018681, ENSMUST00000103148, ENSMUST00000103149, ENSMUST00000126185, ENSMUST00000134003, ENSMUST00000169807, ENSMUST00000179765
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001163307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001163308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF483502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF483503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL596123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB406926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB872501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI991588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY008477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CS065982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D13676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D90085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000018681   ⟹   ENSMUSP00000018681
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1197,689,820 - 97,700,497 (-)Ensembl
RefSeq Acc Id: ENSMUST00000103148   ⟹   ENSMUSP00000099437
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1197,689,820 - 97,699,641 (-)Ensembl
RefSeq Acc Id: ENSMUST00000103149   ⟹   ENSMUSP00000099438
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1197,689,792 - 97,692,407 (-)Ensembl
RefSeq Acc Id: ENSMUST00000126185
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1197,697,199 - 97,699,581 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134003
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1197,690,528 - 97,692,409 (-)Ensembl
RefSeq Acc Id: ENSMUST00000169807   ⟹   ENSMUSP00000126967
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1197,688,823 - 97,699,648 (-)Ensembl
RefSeq Acc Id: ENSMUST00000179765   ⟹   ENSMUSP00000137517
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1197,688,823 - 97,699,384 (-)Ensembl
RefSeq Acc Id: NM_001163307   ⟹   NP_001156779
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391197,579,649 - 97,590,210 (-)NCBI
GRCm381197,688,823 - 97,699,384 (-)NCBI
MGSCv371197,550,137 - 97,561,811 (-)RGD
Celera11107,338,639 - 107,350,289 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001163308   ⟹   NP_001156780
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391197,579,649 - 97,590,474 (-)NCBI
GRCm381197,688,823 - 97,699,648 (-)NCBI
MGSCv371197,550,137 - 97,561,811 (-)RGD
Celera11107,338,639 - 107,350,289 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_009545   ⟹   NP_033571
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391197,579,649 - 97,591,323 (-)NCBI
GRCm381197,688,823 - 97,700,497 (-)NCBI
MGSCv371197,550,137 - 97,561,811 (-)RGD
Celera11107,338,639 - 107,350,289 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011248972   ⟹   XP_011247274
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391197,579,647 - 97,593,260 (-)NCBI
GRCm381197,688,821 - 97,702,434 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248973   ⟹   XP_011247275
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391197,579,647 - 97,593,260 (-)NCBI
GRCm381197,688,821 - 97,702,434 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248975   ⟹   XP_011247277
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391197,579,647 - 97,593,260 (-)NCBI
GRCm381197,688,821 - 97,702,434 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156632   ⟹   XP_036012525
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391197,579,647 - 97,593,260 (-)NCBI
RefSeq Acc Id: XM_036156633   ⟹   XP_036012526
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391197,579,647 - 97,593,260 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_033571   ⟸   NM_009545
- UniProtKB: P23798 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001156780   ⟸   NM_001163308
- UniProtKB: P23798 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001156779   ⟸   NM_001163307
- UniProtKB: P23798 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011247277   ⟸   XM_011248975
- Peptide Label: isoform X1
- UniProtKB: P23798 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011247274   ⟸   XM_011248972
- Peptide Label: isoform X1
- UniProtKB: P23798 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011247275   ⟸   XM_011248973
- Peptide Label: isoform X1
- UniProtKB: P23798 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000137517   ⟸   ENSMUST00000179765
RefSeq Acc Id: ENSMUSP00000099438   ⟸   ENSMUST00000103149
RefSeq Acc Id: ENSMUSP00000099437   ⟸   ENSMUST00000103148
RefSeq Acc Id: ENSMUSP00000018681   ⟸   ENSMUST00000018681
RefSeq Acc Id: ENSMUSP00000126967   ⟸   ENSMUST00000169807
RefSeq Acc Id: XP_036012526   ⟸   XM_036156633
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036012525   ⟸   XM_036156632
- Peptide Label: isoform X1
Protein Domains
RAWUL

Promoters
RGD ID:6821504
Promoter ID:MM_KWN:9504
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:ENSMUST00000103149,   OTTMUST00000005468
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361197,553,306 - 97,554,312 (-)MPROMDB
RGD ID:6821502
Promoter ID:MM_KWN:9505
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_2Hour,   Brain,   ES_Cell,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000103148,   NM_001163307,   NM_001163308,   OTTMUST00000005467
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361197,561,186 - 97,561,877 (-)MPROMDB
RGD ID:6821506
Promoter ID:MM_KWN:9506
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Kidney
Transcripts:NM_009545
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361197,561,479 - 97,561,979 (-)MPROMDB
RGD ID:8676424
Promoter ID:EPDNEW_M16242
Type:initiation region
Name:Pcgf2_1
Description:Mus musculus polycomb group ring finger 2 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16243  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381197,699,644 - 97,699,704EPDNEW
RGD ID:8676426
Promoter ID:EPDNEW_M16243
Type:initiation region
Name:Pcgf2_2
Description:Mus musculus polycomb group ring finger 2 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16242  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381197,700,521 - 97,700,581EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:99161 AgrOrtholog
Ensembl Genes ENSMUSG00000018537 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000018681 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000099437 UniProtKB/Swiss-Prot
  ENSMUSP00000099438 UniProtKB/TrEMBL
  ENSMUSP00000126967 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000137517 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000018681 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000103148 UniProtKB/Swiss-Prot
  ENSMUST00000103149 UniProtKB/TrEMBL
  ENSMUST00000169807 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000179765 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot
InterPro RAWUL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot
  Znf_RING_CS UniProtKB/Swiss-Prot
KEGG Report mmu:22658 UniProtKB/Swiss-Prot
MGD MGI:99161 ENTREZGENE
NCBI Gene 22658 ENTREZGENE
Pfam RAWUL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pcgf2 PhenoGen
PROSITE ZF_RING_1 UniProtKB/Swiss-Prot
  ZF_RING_2 UniProtKB/Swiss-Prot
SMART RING UniProtKB/Swiss-Prot
UniProt B1AR14_MOUSE UniProtKB/TrEMBL
  P23798 ENTREZGENE, UniProtKB/Swiss-Prot