Vdr (vitamin D (1,25-dihydroxyvitamin D3) receptor) - Rat Genome Database

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Gene: Vdr (vitamin D (1,25-dihydroxyvitamin D3) receptor) Mus musculus
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Symbol: Vdr
Name: vitamin D (1,25-dihydroxyvitamin D3) receptor
RGD ID: 11484
MGI Page MGI
Description: Enables DNA binding activity and nuclear receptor activity. Involved in regulation of calcidiol 1-monooxygenase activity. Acts upstream of or within several processes, including intestinal absorption; mammary gland development; and positive regulation of apoptotic process involved in mammary gland involution. Predicted to be located in several cellular components, including T-tubule; chromatin; and nuclear lumen. Predicted to be part of RNA polymerase II transcription regulator complex and receptor complex. Predicted to be active in nucleus. Is expressed in several structures, including alimentary system; metanephros; nervous system; sensory organ; and skeleton. Used to study osteoporosis and rickets. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); carcinoma (multiple); liver disease (multiple); lung disease (multiple); and melanoma (multiple). Orthologous to human VDR (vitamin D receptor).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1,25-dihydroxyvitamin D3 receptor; Nr; Nr1i1; nuclear receptor subfamily 1 group I member 1; vitamin D receptor; vitamin D3 receptor
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391597,752,308 - 97,806,177 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1597,752,306 - 97,808,511 (-)EnsemblGRCm39 Ensembl
GRCm381597,854,427 - 97,908,296 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1597,854,425 - 97,910,630 (-)EnsemblGRCm38mm10GRCm38
MGSCv371597,684,858 - 97,738,727 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361597,682,461 - 97,736,330 (-)NCBIMGSCv36mm8
Celera1599,981,938 - 100,035,599 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1553.85NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
acquired immunodeficiency syndrome  (ISO)
Acute Hepatitis  (IEP)
Addison's disease  (ISO)
alopecia  (IMP,ISO)
amyotrophic lateral sclerosis  (ISO)
aortic valve stenosis  (ISO)
asthma  (ISO)
atherosclerosis  (IMP)
atopic dermatitis  (ISO)
autism spectrum disorder  (ISO)
autoimmune hepatitis  (ISO)
autosomal recessive limb-girdle muscular dystrophy type 2B  (ISO)
B-Cell Chronic Lymphocytic Leukemia  (ISO)
Barrett's esophagus  (ISO)
basal cell carcinoma  (ISO)
Behcet's disease  (ISO)
breast cancer  (ISO)
Breast Neoplasms  (ISO)
bronchopulmonary dysplasia  (ISO)
cholangitis  (ISO)
Chronic Hepatitis C  (ISO)
chronic obstructive pulmonary disease  (ISO)
Chronic Periodontitis  (ISO)
coronary artery disease  (ISO)
Crohn's disease  (ISO)
diabetes mellitus  (ISO)
diabetic retinopathy  (ISO)
disease of cellular proliferation  (ISO)
Dwarfism  (ISO)
erythema nodosum  (ISO)
esophagus adenocarcinoma  (ISO)
Experimental Autoimmune Encephalomyelitis  (IDA,IMP)
Experimental Mammary Neoplasms  (IMP)
Fabry disease  (ISO)
familial adenomatous polyposis  (ISO)
familial adenomatous polyposis 2  (ISO)
Familial Hypophosphatemic Rickets  (ISO)
Fetal Growth Retardation  (ISO)
genetic disease  (ISO)
gestational diabetes  (ISO)
Graves' disease  (ISO)
hepatitis B  (ISO)
hepatocellular carcinoma  (ISO)
human immunodeficiency virus infectious disease  (ISO)
Hypercalciuria  (ISO)
hypertension  (ISO)
Hypophosphatemic Rickets  (ISO)
Inflammation  (ISO)
Insulin Resistance  (IMP)
Intervertebral Disc Displacement  (ISO)
Knee Osteoarthritis  (ISO)
Lead Poisoning  (ISO)
leishmaniasis  (IMP)
lepromatous leprosy  (ISO)
liver cirrhosis  (IMP,ISO)
male breast cancer  (ISO)
melanoma  (ISO)
metabolic dysfunction-associated steatotic liver disease  (IEP,IMP,ISO)
multiple sclerosis  (ISO)
Myocardial Reperfusion Injury  (IEP)
myopia  (ISO)
Neoplasm Metastasis  (ISO)
nephrotoxicity  (ISO)
obesity  (ISO)
osteoporosis  (IAGP,ISO)
otosclerosis  (ISO)
Parathyroid Neoplasms  (ISO)
Parkinson's disease  (ISO)
peptic esophagitis  (ISO)
periodontitis  (ISO)
pneumonia  (IMP,ISO)
polycystic ovary syndrome  (ISO)
Postmenopausal Osteoporosis  (ISO)
pre-eclampsia  (ISO)
primary biliary cholangitis  (ISO)
primary hyperparathyroidism  (ISO)
primary sclerosing cholangitis  (ISO)
prostate cancer  (ISO)
Prostatic Neoplasms  (ISO)
psoriasis  (ISO)
pulmonary tuberculosis  (ISO)
renal cell carcinoma  (ISO)
retinal degeneration  (ISO)
RETINAL DYSTROPHY WITH INNER RETINAL DYSFUNCTION AND GANGLION CELL ABNORMALITIES  (ISO)
rheumatoid arthritis  (ISO)
rickets  (IAGP,ISO)
secondary hyperparathyroidism  (ISO)
skin melanoma  (ISO)
Spinal Fractures  (ISO)
squamous cell carcinoma  (ISO)
steatotic liver disease  (IMP,ISO)
Sunburn  (ISO)
Systemic Inflammatory Response Syndrome  (ISO)
temporal lobe epilepsy  (ISO)
transitional cell carcinoma  (ISO)
tuberculoid leprosy  (ISO)
tuberculosis  (ISO)
Turner syndrome  (ISO)
type 1 diabetes mellitus  (ISO)
type 2 diabetes mellitus  (ISO)
uremia  (ISO)
Urinary Calculi  (ISO)
Viral Bronchiolitis  (ISO)
Vitamin D Deficiency  (ISO)
vitamin D-dependent rickets  (ISO)
vitamin D-dependent rickets type 2A  (IMP,ISO)
vitiligo  (ISO)
Weight Gain  (IMP,ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (ISO)
(R)-noradrenaline  (ISO)
1,2-dimethylhydrazine  (EXP)
1,25-Dihydroxy-16-ene-vitamin D3  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP,ISO)
2-palmitoylglycerol  (ISO)
24,25-Dihydroxyvitamin D  (EXP,ISO)
3,7-dihydropurine-6-thione  (ISO)
3-\{1-[3-(dimethylamino)propyl]-1H-indol-3-yl\}-4-(1H-indol-3-yl)-1H-pyrrole-2,5-dione  (EXP,ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methoxytyramine  (ISO)
3-oxo-5beta-cholanic acid  (ISO)
3-phenoxybenzoic acid  (ISO)
4-hydroxyphenyl retinamide  (EXP,ISO)
5-aza-2'-deoxycytidine  (ISO)
8-Br-cAMP  (ISO)
9-cis-retinoic acid  (ISO)
acetylsalicylic acid  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
alendronic acid  (ISO)
alfacalcidol  (EXP,ISO)
all-trans-retinoic acid  (EXP,ISO)
alpha-linolenic acid  (ISO)
alpha-naphthoflavone  (ISO)
ammonium chloride  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
bafilomycin A1  (ISO)
benzene  (EXP)
benzo[a]pyrene  (EXP,ISO)
bezafibrate  (ISO)
biphenyl-2-ol  (ISO)
bisdemethoxycurcumin  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcidiol  (EXP,ISO)
calciol  (EXP,ISO)
calcipotriol  (ISO)
calcitriol  (EXP,ISO)
calcium atom  (EXP,ISO)
calcium(0)  (EXP,ISO)
captopril  (EXP)
carbon nanotube  (EXP)
carnosic acid  (ISO)
cefalotin  (EXP)
CGP 52608  (ISO)
chenodeoxycholic acid  (ISO)
CHIR 99021  (ISO)
chloroacetaldehyde  (ISO)
cholanic acid  (EXP,ISO)
cholesterol  (ISO)
cholic acid  (ISO)
chromium(6+)  (EXP)
ciguatoxin CTX1B  (EXP)
cisplatin  (EXP,ISO)
copper(II) sulfate  (ISO)
curcumin  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
D-glucose  (ISO)
daunorubicin  (ISO)
desferrioxamine B  (ISO)
dexamethasone  (EXP,ISO)
dextran sulfate  (EXP)
diallyl trisulfide  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
dimethylarsinic acid  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
dopamine  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
estriol  (ISO)
etoposide  (ISO)
eugenol  (ISO)
Falecalcitriol  (ISO)
fenvalerate  (ISO)
flucythrinate  (ISO)
folic acid  (EXP)
fulvestrant  (ISO)
gamma-tocopherol  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glucose  (ISO)
glycitein  (ISO)
Goe 6976  (EXP,ISO)
guggulsterone  (EXP)
GW 501516  (ISO)
hexachlorobenzene  (EXP)
homovanillic acid  (ISO)
idarubicin  (ISO)
iron atom  (ISO)
iron(0)  (ISO)
isopentenyl diphosphate  (ISO)
kaempferol  (ISO)
ketoconazole  (ISO)
lacidipine  (ISO)
lactacystin  (ISO)
lamivudine  (EXP)
lead diacetate  (ISO)
lead(0)  (ISO)
levonorgestrel  (ISO)
lipopolysaccharide  (ISO)
lithocholic acid  (EXP,ISO)
LY294002  (ISO)
manidipine  (ISO)
Maxacalcitol  (ISO)
medroxyprogesterone acetate  (ISO)
mercaptopurine  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methotrexate  (ISO)
methoxsalen  (ISO)
methyl beta-cyclodextrin  (ISO)
methylseleninic acid  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
N-nitrosodiethylamine  (EXP)
neomycin  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
O-methyleugenol  (ISO)
okadaic acid  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
paricalcitol  (ISO)
pentanal  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phenothrin  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
phosphorus atom  (ISO)
phosphorus(.)  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
prednisone  (ISO)
promegestone  (ISO)
propanal  (ISO)
purine-6-thiol  (ISO)
pyridaben  (ISO)
quercetin  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
saracatinib  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP,ISO)
simvastatin  (EXP)
sodium arsenite  (EXP,ISO)
sodium atom  (EXP)
sodium chloride  (ISO)
sotorasib  (ISO)
staurosporine  (ISO)
streptozocin  (ISO)
sunitinib  (ISO)
superoxide  (EXP)
suramin  (ISO)
tamoxifen  (ISO)
terbufos  (ISO)
tetrachloromethane  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
tocopherol  (ISO)
trametinib  (ISO)
tributylstannane  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
triphenyl phosphate  (ISO)
troglitazone  (EXP)
uranium atom  (ISO)
valproic acid  (ISO)
vincristine  (ISO)
vitamin D  (EXP,ISO)
warfarin  (ISO)
zidovudine  (EXP)
zinc atom  (ISO)
zinc protoporphyrin  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
animal organ morphogenesis  (IMP)
apoptotic process involved in mammary gland involution  (IMP)
apoptotic signaling pathway  (ISO)
calcium ion transport  (IMP)
cell differentiation  (IBA)
cell morphogenesis  (IEA,ISO)
cellular response to amyloid-beta  (ISO)
cellular response to vitamin D  (ISO)
decidualization  (IEA)
heart development  (ISO)
intestinal absorption  (IMP)
intracellular calcium ion homeostasis  (IMP)
lactation  (IMP)
mammary gland branching involved in pregnancy  (IMP)
mRNA transcription by RNA polymerase II  (ISO,ISS)
negative regulation of bone trabecula formation  (ISO)
negative regulation of cell population proliferation  (ISO)
negative regulation of DNA-templated transcription  (ISO)
negative regulation of keratinocyte proliferation  (IEA,ISO)
negative regulation of ossification  (ISO)
negative regulation of transcription by RNA polymerase II  (IBA,ISO)
nuclear receptor-mediated bile acid signaling pathway  (ISO)
phosphate ion transmembrane transport  (IEA,ISO)
positive regulation of apoptotic process involved in mammary gland involution  (IMP)
positive regulation of bone mineralization  (NAS)
positive regulation of gene expression  (IEA,ISO)
positive regulation of keratinocyte differentiation  (IEA,ISO)
positive regulation of parathyroid hormone secretion  (ISO)
positive regulation of transcription by RNA polymerase II  (IBA,ISO,ISS)
positive regulation of vitamin D 24-hydroxylase activity  (ISO)
positive regulation of vitamin D receptor signaling pathway  (ISO)
regulation of calcidiol 1-monooxygenase activity  (IMP)
regulation of calcium ion transport  (ISO)
regulation of DNA-templated transcription  (IDA)
response to aldosterone  (ISO)
response to bile acid  (IEA,ISO)
response to calcium ion  (ISO)
response to estradiol  (ISO)
retinoic acid receptor signaling pathway  (ISO)
skeletal system development  (IMP)
vitamin D receptor signaling pathway  (ISO,ISS)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal blood homeostasis  (IAGP)
abnormal bone mineralization  (IAGP)
abnormal bone ossification  (IAGP)
abnormal bone structure  (IAGP)
abnormal CD4-positive, alpha-beta T cell physiology  (IAGP)
abnormal chemokine secretion  (IAGP)
abnormal chondrocyte morphology  (IAGP)
abnormal coat/ hair morphology  (IAGP)
abnormal coat/hair pigmentation  (IEA)
abnormal colon morphology  (IAGP)
abnormal cytokine level  (IAGP)
abnormal dendritic cell differentiation  (IAGP)
abnormal enzyme/coenzyme activity  (IAGP)
abnormal epidermis stratum granulosum morphology  (IAGP)
abnormal epiphyseal plate morphology  (IAGP)
abnormal estrous cycle  (IAGP)
abnormal fat-soluble vitamin level  (IAGP)
abnormal female reproductive system morphology  (IAGP)
abnormal femur morphology  (IAGP)
abnormal fertility/fecundity  (IAGP)
abnormal fibula morphology  (IAGP)
abnormal gait  (IEA)
abnormal gametogenesis  (IAGP)
abnormal glucose tolerance  (IAGP)
abnormal head morphology  (IEA)
abnormal heart ventricle morphology  (IAGP)
abnormal interleukin level  (IAGP)
abnormal interleukin-1 secretion  (IAGP)
abnormal intestinal epithelium morphology  (IAGP)
abnormal intestinal mucosa morphology  (IAGP)
abnormal large intestine crypts of Lieberkuhn morphology  (IAGP)
abnormal limb bone morphology  (IAGP)
abnormal locomotor activation  (IAGP)
abnormal locomotor behavior  (IEA)
abnormal long bone hypertrophic chondrocyte zone  (IAGP)
abnormal long bone metaphysis morphology  (IAGP)
abnormal lymph node cell ratio  (IAGP)
abnormal macrophage chemotaxis  (IAGP)
abnormal macrophage physiology  (IAGP)
abnormal male reproductive system morphology  (IAGP)
abnormal mineral homeostasis  (IAGP)
abnormal myocardial fiber physiology  (IAGP)
abnormal nitric oxide homeostasis  (IAGP)
abnormal osteoclast differentiation  (IAGP)
abnormal renin activity  (IAGP)
abnormal response to new environment  (IAGP)
abnormal response to vitamins  (IAGP)
abnormal skeleton physiology  (IAGP)
abnormal skin development  (IAGP)
abnormal spermatogenesis  (IAGP)
abnormal splenic cell ratio  (IAGP)
abnormal startle reflex  (IAGP)
abnormal T cell number  (IAGP)
abnormal thymus corticomedullary boundary morphology  (IAGP)
abnormal thymus involution  (IAGP)
abnormal tibia morphology  (IAGP)
abnormal trabecular bone morphology  (IAGP)
abnormal tumor necrosis factor level  (IAGP)
abnormal urine homeostasis  (IAGP)
abnormal vitamin D level  (IAGP)
absent mature ovarian follicles  (IAGP)
absent spleen white pulp  (IAGP)
alopecia  (IAGP)
anemia  (IAGP)
asthenozoospermia  (IAGP)
cardiac fibrosis  (IAGP)
cardiac hypertrophy  (IAGP)
colitis  (IAGP)
decreased angiogenesis  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased bone mineral density  (IAGP)
decreased bone mineral density of femur  (IAGP)
decreased bone resorption  (IAGP)
decreased circulating calcium level  (IAGP)
decreased circulating phosphate level  (IAGP)
decreased compact bone thickness  (IAGP)
decreased grip strength  (IEA)
decreased hair follicle cell proliferation  (IAGP)
decreased interleukin-6 secretion  (IAGP)
decreased intestinal calcium absorption  (IAGP)
decreased locomotor activity  (IAGP)
decreased lymphocyte cell number  (IAGP)
decreased mean systemic arterial blood pressure  (IAGP)
decreased osteoclast cell number  (IAGP)
decreased prepulse inhibition  (IAGP)
decreased regulatory T cell number  (IAGP)
decreased splenocyte proliferation  (IAGP)
decreased startle reflex  (IEA)
decreased susceptibility to autoimmune diabetes  (IAGP)
decreased susceptibility to parasitic infection  (IAGP)
decreased systemic arterial diastolic blood pressure  (IAGP)
decreased systemic arterial systolic blood pressure  (IAGP)
decreased T cell proliferation  (IAGP)
decreased uterus weight  (IAGP)
decreased vertical activity  (IAGP)
delayed endochondral bone ossification  (IAGP)
dermal cyst  (IAGP)
dermatitis  (IAGP)
dilated hair follicle  (IAGP)
dilated seminiferous tubule  (IAGP)
disorganized long bone epiphyseal plate  (IAGP)
ear inflammation  (IAGP)
enlarged mesenteric lymph nodes  (IAGP)
enlarged parathyroid gland  (IAGP)
enlarged spleen  (IAGP)
epidermal cyst  (IAGP)
female infertility  (IAGP)
flat face  (IAGP)
hypertension  (IAGP)
impaired coordination  (IAGP)
increased activity of parathyroid  (IAGP)
increased bone mass  (IAGP)
increased bone mineral density  (IAGP)
increased circulating alkaline phosphatase level  (IAGP)
increased circulating angiotensin II level  (IAGP)
increased circulating angiotensinogen level  (IAGP)
increased circulating atrial natriuretic factor  (IAGP)
increased circulating follicle stimulating hormone level  (IAGP)
increased circulating luteinizing hormone level  (IAGP)
increased circulating parathyroid hormone level  (IAGP)
increased circulating phosphate level  (IAGP)
increased circulating renin level  (IAGP)
increased fluid intake  (IAGP)
increased heart left ventricle weight  (IAGP)
increased heart weight  (IAGP)
increased long bone epiphyseal plate size  (IAGP)
increased macrophage cell number  (IAGP)
increased myocardial fiber size  (IAGP)
increased neutrophil cell number  (IAGP)
increased osteoblast cell number  (IAGP)
increased osteoid volume  (IAGP)
increased prepulse inhibition  (IEA)
increased renin activity  (IAGP)
increased spleen red pulp amount  (IAGP)
increased susceptibility to autoimmune diabetes  (IAGP)
increased susceptibility to induced colitis  (IAGP)
increased susceptibility to xenobiotic induced morbidity/mortality  (IAGP)
increased systemic arterial diastolic blood pressure  (IAGP)
increased systemic arterial systolic blood pressure  (IAGP)
increased T cell apoptosis  (IAGP)
increased testis weight  (IAGP)
increased thymus weight  (IAGP)
increased trabecular bone volume  (IAGP)
increased urine calcium level  (IAGP)
increased urine potassium level  (IAGP)
increased urine sodium level  (IAGP)
increased width of hypertrophic chondrocyte zone  (IAGP)
intestinal inflammation  (IAGP)
intestinal ulcer  (IAGP)
male infertility  (IAGP)
mixed cellular infiltration to dermis  (IAGP)
oligozoospermia  (IAGP)
parathyroid gland hyperplasia  (IAGP)
polyuria  (IAGP)
postnatal growth retardation  (IAGP)
premature death  (IAGP)
rectal prolapse  (IAGP)
reduced female fertility  (IAGP)
reduced male fertility  (IAGP)
rickets  (IAGP)
short femur  (IAGP)
short snout  (IAGP)
short stride length  (IAGP)
short tibia  (IAGP)
slow postnatal weight gain  (IAGP)
sparse vibrissae  (IAGP)
thick interventricular septum  (IAGP)
thick ventricular wall  (IAGP)
thymus hyperplasia  (IAGP)
thymus hypoplasia  (IAGP)
tremors  (IEA)
uterus hypoplasia  (IAGP)
weight loss  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Vitamin D receptor gene polymorphisms and haplotypes and postmenopausal breast cancer risk. Abbas S, etal., Breast Cancer Res. 2008;10(2):R31. doi: 10.1186/bcr1994. Epub 2008 Apr 17.
2. Vitamin D receptor gene methylation in hepatocellular carcinoma. Abdalla M, etal., Gene. 2018 May 5;653:65-71. doi: 10.1016/j.gene.2018.02.024. Epub 2018 Feb 9.
3. Vitamin D receptor (VDR) gene SNPs influence VDR expression and modulate protection from multiple sclerosis in HLA-DRB1*15-positive individuals. Agliardi C, etal., Brain Behav Immun. 2011 Jun 12.
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PMID:14739296   PMID:14757825   PMID:14996670   PMID:15165995   PMID:15167547   PMID:15178742   PMID:15205460   PMID:15225798   PMID:15225849   PMID:15275953   PMID:15322135   PMID:15322208  
PMID:15331595   PMID:15352170   PMID:15367398   PMID:15456794   PMID:15517598   PMID:15544934   PMID:15591533   PMID:15593122   PMID:15601867   PMID:15601870   PMID:15610065   PMID:15618518  
PMID:15639181   PMID:15643054   PMID:15647825   PMID:15671029   PMID:15691890   PMID:15718253   PMID:15741244   PMID:15824121   PMID:15866228   PMID:15869926   PMID:15885032   PMID:15905206  
PMID:15905360   PMID:15976027   PMID:15998839   PMID:16076629   PMID:16111884   PMID:16118315   PMID:16141072   PMID:16141073   PMID:16150907   PMID:16239345   PMID:16256271   PMID:16419036  
PMID:16427152   PMID:16442749   PMID:16464687   PMID:16467308   PMID:16476050   PMID:16517748   PMID:16537572   PMID:16641675   PMID:16691293   PMID:16829211   PMID:16880407   PMID:16971476  
PMID:16973757   PMID:17035339   PMID:17099775   PMID:17110426   PMID:17121851   PMID:17123805   PMID:17148678   PMID:17207992   PMID:17223342   PMID:17254773   PMID:17275288   PMID:17275289  
PMID:17286279   PMID:17397543   PMID:17467982   PMID:17482806   PMID:17517646   PMID:17609113   PMID:17628009   PMID:17657241   PMID:17928826   PMID:17959935   PMID:17962355   PMID:17974622  
PMID:18212051   PMID:18213391   PMID:18287559   PMID:18337835   PMID:18358842   PMID:18364394   PMID:18509362   PMID:18694980   PMID:18832438   PMID:18845643   PMID:19015318   PMID:19034301  
PMID:19052561   PMID:19088060   PMID:19095793   PMID:19141646   PMID:19176352   PMID:19197242   PMID:19254681   PMID:19269787   PMID:19344698   PMID:19429446   PMID:19500727   PMID:19549793  
PMID:19622632   PMID:19631778   PMID:19692484   PMID:19896660   PMID:19897601   PMID:19924301   PMID:19931640   PMID:19944755   PMID:19948844   PMID:19951695   PMID:19968565   PMID:19995948  
PMID:20051486   PMID:20059953   PMID:20171278   PMID:20194632   PMID:20211142   PMID:20211253   PMID:20214989   PMID:20227497   PMID:20301229   PMID:20347977   PMID:20378820   PMID:20398752  
PMID:20412781   PMID:20458748   PMID:20566739   PMID:20664059   PMID:20813899   PMID:20932939   PMID:21190957   PMID:21191070   PMID:21267068   PMID:21270396   PMID:21298063   PMID:21300024  
PMID:21328347   PMID:21386911   PMID:21424540   PMID:21471213   PMID:21482732   PMID:21601024   PMID:21637996   PMID:21677750   PMID:21697289   PMID:21746882   PMID:21769914   PMID:21814234  
PMID:21832078   PMID:21836023   PMID:21840998   PMID:21850575   PMID:21858154   PMID:21868377   PMID:21873635   PMID:21947295   PMID:21948983   PMID:21952242   PMID:21982773   PMID:22008469  
PMID:22028889   PMID:22034957   PMID:22169009   PMID:22207345   PMID:22242171   PMID:22278022   PMID:22294750   PMID:22319626   PMID:22495177   PMID:22523068   PMID:22537547   PMID:22589201  
PMID:22592802   PMID:22638071   PMID:22647636   PMID:22647968   PMID:22648952   PMID:22670054   PMID:22791341   PMID:22854622   PMID:22896638   PMID:22932118   PMID:22948213   PMID:22962257  
PMID:22988430   PMID:23026511   PMID:23041070   PMID:23112173   PMID:23123403   PMID:23132743   PMID:23188491   PMID:23201171   PMID:23240054   PMID:23389957   PMID:23436936   PMID:23439304  
PMID:23470620   PMID:23585425   PMID:23644099   PMID:23671281   PMID:23696511   PMID:23784946   PMID:23850520   PMID:23873355   PMID:23895994   PMID:23896121   PMID:23945234   PMID:24196349  
PMID:24202304   PMID:24284821   PMID:24343899   PMID:24349534   PMID:24352045   PMID:24365583   PMID:24434184   PMID:24434283   PMID:24470103   PMID:24502291   PMID:24601885   PMID:24641763  
PMID:24722695   PMID:24797667   PMID:24891508   PMID:24949660   PMID:24952961   PMID:25015343   PMID:25043694   PMID:25053427   PMID:25061117   PMID:25080448   PMID:25139050   PMID:25147982  
PMID:25180455   PMID:25201890   PMID:25259922   PMID:25315967   PMID:25316911   PMID:25339699   PMID:25344836   PMID:25405762   PMID:25406395   PMID:25620699   PMID:25719262   PMID:25815722  
PMID:25837735   PMID:25873367   PMID:25919700   PMID:25961000   PMID:26008979   PMID:26046242   PMID:26065916   PMID:26121239   PMID:26134413   PMID:26159695   PMID:26211511   PMID:26212084  
PMID:26235988   PMID:26319498   PMID:26322890   PMID:26323657   PMID:26340892   PMID:26343449   PMID:26343450   PMID:26348637   PMID:26369613   PMID:26429395   PMID:26429397   PMID:26441239  
PMID:26462119   PMID:26488808   PMID:26504088   PMID:26606857   PMID:26675943   PMID:26690785   PMID:26750596   PMID:26877201   PMID:27174721   PMID:27180929   PMID:27184385   PMID:27283745  
PMID:27328307   PMID:27473111   PMID:27498418   PMID:27526034   PMID:27567005   PMID:27601169   PMID:27693451   PMID:27723756   PMID:27728806   PMID:27820600   PMID:27856242   PMID:27895587  
PMID:27898044   PMID:27932380   PMID:28003380   PMID:28004271   PMID:28025137   PMID:28069388   PMID:28104492   PMID:28115699   PMID:28177161   PMID:28216630   PMID:28303937   PMID:28368514  
PMID:28368538   PMID:28443031   PMID:28472309   PMID:28600880   PMID:28602960   PMID:28635660   PMID:28666969   PMID:28751364   PMID:28765041   PMID:28798354   PMID:28803336   PMID:28808057  
PMID:28887147   PMID:28900153   PMID:28938396   PMID:29074956   PMID:29107736   PMID:29228157   PMID:29255036   PMID:29272316   PMID:29282249   PMID:29444238   PMID:29555976   PMID:29718408  
PMID:29754817   PMID:29787748   PMID:29844206   PMID:29942284   PMID:30074824   PMID:30260469   PMID:30267995   PMID:30273386   PMID:30723466   PMID:30813930   PMID:30864841   PMID:31028080  
PMID:31034649   PMID:31086057   PMID:31225722   PMID:31278070   PMID:31291246   PMID:31361973   PMID:31381163   PMID:31506976   PMID:31555149   PMID:31636184   PMID:31669589   PMID:31776512  
PMID:31866999   PMID:31875848   PMID:31880094   PMID:31940280   PMID:31945466   PMID:31958633   PMID:31968250   PMID:31981799   PMID:32051143   PMID:32082243   PMID:32213983   PMID:32289320  
PMID:32355205   PMID:32497792   PMID:32520608   PMID:32736700   PMID:32863311   PMID:32882254   PMID:32968066   PMID:32987399   PMID:33045433   PMID:33084400   PMID:33130085   PMID:33217447  
PMID:33259938   PMID:33288743   PMID:33368246   PMID:33373677   PMID:33418034   PMID:33524369   PMID:33647520   PMID:33690841   PMID:33782973   PMID:33965570   PMID:34013750   PMID:34043707  
PMID:34108685   PMID:34165161   PMID:34304712   PMID:34330705   PMID:34432556   PMID:34453978   PMID:34603779   PMID:34877816   PMID:34878523   PMID:34953963   PMID:34986435   PMID:35065959  
PMID:35082348   PMID:35202799   PMID:35254654   PMID:35288479   PMID:35338345   PMID:35714079   PMID:35833522   PMID:36280140   PMID:36341456   PMID:36402439   PMID:36434267   PMID:36462760  
PMID:36579449   PMID:36583727   PMID:36632467   PMID:36642403   PMID:36672270   PMID:36726200   PMID:36791055   PMID:36834927   PMID:36890539   PMID:36960562   PMID:37056928   PMID:37074210  
PMID:37248534   PMID:37265392   PMID:37276450   PMID:37330071   PMID:37352941   PMID:37380774   PMID:37381989   PMID:37490334   PMID:37509101   PMID:37569725   PMID:37673445   PMID:37681408  
PMID:37683909   PMID:37688783   PMID:38104651   PMID:38145959   PMID:38479384  


Genomics

Comparative Map Data
Vdr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391597,752,308 - 97,806,177 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1597,752,306 - 97,808,511 (-)EnsemblGRCm39 Ensembl
GRCm381597,854,427 - 97,908,296 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1597,854,425 - 97,910,630 (-)EnsemblGRCm38mm10GRCm38
MGSCv371597,684,858 - 97,738,727 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361597,682,461 - 97,736,330 (-)NCBIMGSCv36mm8
Celera1599,981,938 - 100,035,599 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1553.85NCBI
VDR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381247,841,537 - 47,904,994 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1247,841,537 - 47,943,048 (-)EnsemblGRCh38hg38GRCh38
GRCh371248,235,320 - 48,298,777 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361246,521,587 - 46,585,081 (-)NCBINCBI36Build 36hg18NCBI36
Build 341246,521,588 - 46,585,036NCBI
Celera1247,032,871 - 47,096,518 (-)NCBICelera
Cytogenetic Map12q13.11NCBI
HuRef1245,266,368 - 45,330,677 (-)NCBIHuRef
CHM1_11248,201,212 - 48,264,704 (-)NCBICHM1_1
T2T-CHM13v2.01247,802,918 - 47,866,398 (-)NCBIT2T-CHM13v2.0
Vdr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87130,864,764 - 130,916,757 (-)NCBIGRCr8
mRatBN7.27128,987,981 - 129,037,677 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7128,987,981 - 129,037,677 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7130,785,124 - 130,834,890 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07133,010,661 - 133,060,429 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07132,923,119 - 132,972,888 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07139,344,452 - 139,394,138 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7139,342,063 - 139,394,166 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07139,536,241 - 139,585,928 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47136,567,614 - 136,617,280 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17136,644,050 - 136,693,717 (-)NCBI
Celera7125,479,125 - 125,528,679 (-)NCBICelera
Cytogenetic Map7q36NCBI
Vdr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555006,745,678 - 6,798,048 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555006,745,725 - 6,798,052 (-)NCBIChiLan1.0ChiLan1.0
VDR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21046,201,415 - 46,326,056 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11246,198,177 - 46,322,814 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01240,828,413 - 40,891,700 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11241,661,688 - 41,766,192 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1241,702,742 - 41,766,192 (+)Ensemblpanpan1.1panPan2
VDR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1276,852,915 - 6,909,466 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl276,852,723 - 6,909,470 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2739,397,549 - 39,454,181 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0276,920,266 - 6,976,964 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl276,921,548 - 6,976,937 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1276,857,514 - 6,914,062 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0276,892,693 - 6,949,518 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02739,686,018 - 39,742,660 (-)NCBIUU_Cfam_GSD_1.0
Vdr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494567,363,831 - 67,424,087 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365125,740,748 - 5,801,109 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365125,741,836 - 5,800,999 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VDR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl578,205,810 - 78,266,475 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1578,205,807 - 78,266,505 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2581,279,217 - 81,338,475 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VDR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11144,062,198 - 44,126,295 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1144,065,457 - 44,166,684 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037202,254,076 - 202,319,396 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vdr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248164,365,961 - 4,424,514 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248164,314,146 - 4,423,946 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Vdr
1725 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2714
Count of miRNA genes:856
Interacting mature miRNAs:1161
Transcripts:ENSMUST00000023119, ENSMUST00000126568, ENSMUST00000139656, ENSMUST00000173104, ENSMUST00000173611, ENSMUST00000174633
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
1301918Skull22_mskull morphology 22 (mouse)Not determined1585901546104073951Mouse
14928306Manh79_mmandible shape 79 (mouse)1578847557104073951Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578601103102901704Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78601103102901704Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146