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ONTOLOGY REPORT - ANNOTATIONS


Term:head and neck cancer
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Accession:DOID:11934 term browser browse the term
Definition:An organ system cancer that arises in the head or neck region. This region includes the nasal cavity, sinuses, lips, mouth, salivary glands, throat, or larynx. (DO)
Synonyms:exact_synonym: cancer of head and neck;   head and neck neoplasm;   head and neck tumours;   head/neck neoplasm;   tumor of head and neck
 xref: GARD:12425;   NCI:C3077
For additional species annotation, visit the Alliance of Genome Resources.


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head and neck cancer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 JBrowse link 8 62,472,087 62,478,122 RGD:14700957
RGD:14700978
G Dcdc5 doublecortin domain containing 5 JBrowse link 3 97,207,500 97,435,067 RGD:8554872
G Gstm1 glutathione S-transferase mu 1 JBrowse link 2 210,803,869 210,809,461 RGD:14700957
RGD:14700998
RGD:14700978
G Gstt1 glutathione S-transferase theta 1 JBrowse link 20 13,799,102 13,816,527 RGD:14700998
G Kdm4c lysine demethylase 4C JBrowse link 5 90,800,139 91,012,662 RGD:9587748
G Scimp SLP adaptor and CSK interacting membrane protein JBrowse link 10 57,415,429 57,436,412 RGD:8554872
head and neck squamous cell carcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Akt1 AKT serine/threonine kinase 1 JBrowse link 6 137,218,398 137,239,970 RGD:8554872
G Ankrd17 ankyrin repeat domain 17 JBrowse link 14 19,291,025 19,431,521 RGD:8554872
G B2m beta-2 microglobulin JBrowse link 3 114,087,287 114,093,311 RGD:8554872
G Braf B-Raf proto-oncogene, serine/threonine kinase JBrowse link 4 67,389,331 67,520,549 RGD:8554872
G Ccdc3 coiled-coil domain containing 3 JBrowse link 17 76,991,722 77,093,515 RGD:8554872
G Ccnd1 cyclin D1 JBrowse link 1 218,090,750 218,100,447 RGD:13434911
G Cdkn2a cyclin-dependent kinase inhibitor 2A JBrowse link 5 107,823,323 107,832,405 RGD:8552291
RGD:8554872
G Cntn4 contactin 4 JBrowse link 4 137,785,166 138,787,527 RGD:8554872
G Crebbp CREB binding protein JBrowse link 10 11,590,994 11,721,039 RGD:8554872
G Ctnnb1 catenin beta 1 JBrowse link 8 129,601,511 129,628,378 RGD:8554872
G Dnmt3b DNA methyltransferase 3 beta JBrowse link 3 149,131,541 149,170,061 RGD:9589078
G Dpyd dihydropyrimidine dehydrogenase JBrowse link 2 221,823,692 222,694,627 RGD:8554872
G Egfr epidermal growth factor receptor JBrowse link 14 99,919,485 100,104,136 RGD:8554872
G Ep300 E1A binding protein p300 JBrowse link 7 122,818,194 122,889,055 RGD:8554872
G Erbb2 erb-b2 receptor tyrosine kinase 2 JBrowse link 10 86,367,596 86,391,728 RGD:8554872
G Fancb FA complementation group B JBrowse link X 31,124,018 31,140,790 RGD:11344903
G Fancd2 FA complementation group D2 JBrowse link 4 145,489,869 145,551,479 RGD:11344907
G Fbxw7 F-box and WD repeat domain containing 7 JBrowse link 2 184,230,191 184,309,805 RGD:8554872
G Fgfr3 fibroblast growth factor receptor 3 JBrowse link 14 82,272,322 82,287,739 RGD:8554872
G Fhit fragile histidine triad diadenosine triphosphatase JBrowse link 15 15,697,292 16,862,873 RGD:8554872
G Gnas GNAS complex locus JBrowse link 3 172,374,957 172,434,988 RGD:8554872
G Grik2 glutamate ionotropic receptor kainate type subunit 2 JBrowse link 20 53,791,428 54,517,691 RGD:8554872
G Hras HRas proto-oncogene, GTPase JBrowse link 1 214,178,404 214,181,841 RGD:8554872
G Idh2 isocitrate dehydrogenase (NADP(+)) 2 JBrowse link 1 141,874,354 141,893,674 RGD:8554872
G Il2 interleukin 2 JBrowse link 2 123,847,150 123,851,854 RGD:8662923
RGD:8662971
G Ing1 inhibitor of growth family, member 1 JBrowse link 16 83,277,055 83,278,120 RGD:7240710
RGD:8554872
G Keap1 Kelch-like ECH-associated protein 1 JBrowse link 8 22,250,518 22,259,868 RGD:8554872
G Lnx1 ligand of numb-protein X 1 JBrowse link 14 36,047,136 36,149,740 RGD:8554872
G LOC684819 similar to H3 histone, family 2 isoform 2 JBrowse link 17 43,794,397 43,795,493 RGD:8554872
G Lrrc56 leucine rich repeat containing 56 JBrowse link 1 214,182,232 214,197,184 RGD:8554872
G Map2k1 mitogen activated protein kinase kinase 1 JBrowse link 8 69,134,218 69,722,573 RGD:8554872
G Map2k2 mitogen activated protein kinase kinase 2 JBrowse link 7 11,458,971 11,478,520 RGD:8554872
G Mapk1 mitogen activated protein kinase 1 JBrowse link 11 88,203,863 88,273,301 RGD:8554872
G Mir155 microRNA 155 JBrowse link 11 24,176,603 24,176,667 RGD:21081517
G Mmp2 matrix metallopeptidase 2 JBrowse link 19 15,542,771 15,570,589 RGD:8554872
G Nfe2l2 nuclear factor, erythroid 2-like 2 JBrowse link 3 62,497,568 62,525,146 RGD:8554872
G Ogg1 8-oxoguanine DNA glycosylase JBrowse link 4 145,282,828 145,289,367 RGD:8657144
RGD:8657147
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha JBrowse link 2 118,831,350 118,861,456 RGD:8554872
G Ppp2r1a protein phosphatase 2 scaffold subunit A alpha JBrowse link 1 60,717,386 60,736,629 RGD:8554872
G Prex2 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2 JBrowse link 5 7,622,668 7,941,715 RGD:8554872
G Pten phosphatase and tensin homolog JBrowse link 1 251,421,814 251,487,634 RGD:8554872
G Rac1 Rac family small GTPase 1 JBrowse link 12 13,090,316 13,111,841 RGD:8554872
G Rasgrp3 RAS guanyl releasing protein 3 JBrowse link 6 21,072,634 21,171,619 RGD:8554872
G Rhoa ras homolog family member A JBrowse link 8 117,082,440 117,116,244 RGD:8554872
G Samd4a sterile alpha motif domain containing 4A JBrowse link 15 23,666,543 23,879,067 RGD:8554872
G Serpine1 serpin family E member 1 JBrowse link 12 22,641,104 22,651,482 RGD:8547730
G Slc29a1 solute carrier family 29 member 1 JBrowse link 9 17,784,468 17,799,008 RGD:8554872
G Smad4 SMAD family member 4 JBrowse link 18 69,626,682 69,657,373 RGD:8554872
RGD:12880035
G Sntb1 syntrophin, beta 1 JBrowse link 7 95,395,417 95,670,093 RGD:8554872
G Stat3 signal transducer and activator of transcription 3 JBrowse link 10 88,790,401 88,842,263 RGD:8694302
G Tnfrsf10b tumor necrosis factor receptor superfamily, member 10b JBrowse link 15 51,433,853 51,464,215 RGD:11038717
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:8554872
G U2af1 U2 small nuclear RNA auxiliary factor 1 JBrowse link 20 10,396,652 10,407,564 RGD:8554872
G Wrap53 WD repeat containing, antisense to TP53 JBrowse link 10 56,169,024 56,185,800 RGD:8554872
RGD:21081533
RGD:21081529
tongue squamous cell carcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adipoq adiponectin, C1Q and collagen domain containing JBrowse link 11 81,330,845 81,344,488 RGD:8694469
G Brinp3 BMP/retinoic acid inducible neural specific 3 JBrowse link 13 63,526,486 63,959,390 RGD:14398487
G Cav2 caveolin 2 JBrowse link 4 44,573,264 44,580,640 RGD:8661771
G Cdkn1a cyclin-dependent kinase inhibitor 1A JBrowse link 20 6,348,422 6,358,864 RGD:8662376
G Egfr epidermal growth factor receptor JBrowse link 14 99,919,485 100,104,136 RGD:8551769
G Fancb FA complementation group B JBrowse link X 31,124,018 31,140,790 RGD:11049143
G Fancc FA complementation group C JBrowse link 17 826,512 955,703 RGD:11049143
G Fancf FA complementation group F JBrowse link 1 107,229,516 107,232,321 RGD:11049143
G Fancg FA complementation group G JBrowse link 5 58,448,060 58,456,416 RGD:11049143
G Fanci FA complementation group I JBrowse link 1 141,116,565 141,172,997 RGD:11049143
G Fancl FA complementation group L JBrowse link 14 110,675,306 110,740,880 RGD:11049143
G Fancm FA complementation group M JBrowse link 6 86,823,195 86,877,067 RGD:11049143
G Gja1 gap junction protein, alpha 1 JBrowse link 20 37,876,650 37,889,097 RGD:8662380
G Hgf hepatocyte growth factor JBrowse link 4 15,435,460 15,505,377 RGD:8548612
G Ifng interferon gamma JBrowse link 7 61,337,383 61,341,419 RGD:8662972
G Il10 interleukin 10 JBrowse link 13 47,738,933 47,743,392 RGD:8662972
G Il2 interleukin 2 JBrowse link 2 123,847,150 123,851,854 RGD:8662972
G Jak3 Janus kinase 3 JBrowse link 16 20,107,471 20,120,678 RGD:11531126
G Kdr kinase insert domain receptor JBrowse link 14 34,727,677 34,787,127 RGD:8551769
G Met MET proto-oncogene, receptor tyrosine kinase JBrowse link 4 44,747,467 44,854,628 RGD:8548612
G Sox2 SRY-box transcription factor 2 JBrowse link 2 121,165,137 121,167,545 RGD:8661665
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:8547851

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Term Annotations click to browse term
  disease 15610
    disease of cellular proliferation 5827
      cancer 4161
        organ system cancer 3980
          head and neck cancer 78
            head and neck carcinoma + 72
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.