Atp7b (ATPase copper transporting beta) - Rat Genome Database

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Gene: Atp7b (ATPase copper transporting beta) Rattus norvegicus
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Symbol: Atp7b
Name: ATPase copper transporting beta
RGD ID: 2180
Description: Enables copper ion binding activity; copper ion transmembrane transporter activity; and zinc ion binding activity. Involved in several processes, including cellular response to copper ion; copper ion export; and lactation. Located in several cellular components, including basolateral plasma membrane; bicellular tight junction; and trans-Golgi network. Used to study Wilson disease; liver carcinoma; and renal adenoma. Human ortholog(s) of this gene implicated in Wilson disease. Orthologous to human ATP7B (ATPase copper transporting beta); PARTICIPATES IN cisplatin drug pathway; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ATPase Cu++ transporting beta polypeptide (same as Wilson disease); ATPase, Cu++ transporting, beta polypeptide; ATPase, Cu++ transporting, beta polypeptide (same as Wilson disease); copper pump 2; copper-transporting ATPase 2; Hts; PINA; PINA gene, promoter; pineal night-specific ATPase; Wd; wilson disease-associated protein homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: Atp7bhts  
Genetic Models: WKAH.LEC-Atp7bhts/Tj
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81676,654,725 - 76,726,092 (+)NCBIGRCr8
mRatBN7.21669,952,286 - 70,024,404 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1669,951,778 - 70,023,636 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1675,225,956 - 75,297,317 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01678,664,533 - 78,736,202 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01673,913,825 - 73,985,530 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01674,865,516 - 74,944,935 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1674,865,516 - 74,945,286 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01674,495,179 - 74,575,822 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41674,607,988 - 74,680,080 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11674,608,239 - 74,679,614 (+)NCBI
Celera1667,837,288 - 67,908,140 (+)NCBICelera
RH 3.4 Map16664.21RGD
Cytogenetic Map16q12.5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Original Reference(s)
Atp7bRatbreast carcinoma severityISOATP7B (Homo sapiens)2292670mRNA and protein:increased expression:breastRGD 
Atp7bRatEndometrioid Carcinomas disease_progressionISOATP7B (Homo sapiens)2298864protein:increased expression:endometriumRGD 
Atp7bRatliver carcinoma  IAGP 1302456 RGD 
Atp7bRatLiver Neoplasms onsetIAGP 1302456compared to LEC/TjRGD 
Atp7bRatOvarian Neoplasms severityISOATP7B (Homo sapiens)2298865 RGD 
Atp7bRatrenal adenoma  IAGP 1302456 RGD 
Atp7bRatWilson disease  IAGP 2292672DNA:deletion:exonRGD 
Atp7bRatWilson disease  IAGP 631728 RGD 
Atp7bRatWilson disease  ISOATP7B (Homo sapiens)21410182DNA:mutations:multiple:RGD 
Atp7bRatWilson disease treatmentISOATP7B (Homo sapiens)25671604 RGD 
Atp7bRatWilson disease treatmentISOATP7B (Homo sapiens)1554300 RGD 
Atp7bRatWilson disease  IDA 734622 RGD 
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Atp7bRatAnhaptoglobinemia  ISOATP7B (Homo sapiens)8554872ClinVar Annotator: match by term: AnhaptoglobinemiaClinVarPMID:25741868
Atp7bRatchromosome 13q14 deletion syndrome  ISOATP7B (Homo sapiens)8554872ClinVar Annotator: match by term: Chromosome 13q14 deletion syndromeClinVar 
Atp7bRatcongenital disorder of glycosylation  ISOATP7B (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital disorder of glycosylationClinVarPMID:25741868 and PMID:28492532
Atp7bRatcongenital disorder of glycosylation Ip  ISOATP7B (Homo sapiens)8554872ClinVar Annotator: match by term: ALG11-congenital disorder of glycosylationClinVarPMID:10441329 more ...
Atp7bRatessential tremor 1  ISOATP7B (Homo sapiens)8554872ClinVar Annotator: match by term: Hand tremorClinVarPMID:25741868
Atp7bRatgeneralized epilepsy  ISOATP7B (Homo sapiens)8554872ClinVar Annotator: match by term: Epileptic encephalopathyClinVarPMID:10790207 more ...
Atp7bRatgenetic disease  ISOATP7B (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:1000228 more ...
Atp7bRatgenetic disease  ISOATP7B (Homo sapiens)8554872ClinVar more ...ClinVarPMID:32685348 more ...
Atp7bRatgenetic disease  ISOATP7B (Homo sapiens)8554872ClinVar more ...ClinVarPMID:1000228 more ...
Atp7bRatgenetic disease  ISOATP7B (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:32284880 more ...
Atp7bRathereditary breast ovarian cancer syndrome  ISOATP7B (Homo sapiens)8554872ClinVar Annotator: match by term: Breast-ovarian cancer more ...ClinVarPMID:17264425 more ...
Atp7bRatintellectual disability  ISOATP7B (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
Atp7bRatMental Retardation Wolff Type  ISOATP7B (Homo sapiens)8554872ClinVar Annotator: match by term: Wolff Zimmermann syndromeClinVarPMID:10441329 more ...
Atp7bRatspastic ataxia  ISOATP7B (Homo sapiens)8554872ClinVar Annotator: match by term: Spastic ataxiaClinVarPMID:10441329 more ...
Atp7bRatWilson disease  ISOATP7B (Homo sapiens)8554872ClinVar more ...ClinVarPMID:893844 more ...
Atp7bRatWilson disease  ISOATP7B (Homo sapiens)8554872ClinVar more ...ClinVarPMID:1000228 more ...
Atp7bRatWilson disease  ISOATP7B (Homo sapiens)8554872ClinVar more ...ClinVarPMID:25333069 more ...
Atp7bRatWilson disease  ISOATP7B (Homo sapiens)8554872ClinVar more ...ClinVarPMID:26207595 more ...
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Atp7bRatAcute Liver Failure  ISOATP7B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25134866
Atp7bRatAnimal Disease Models  ISOATP7B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:11803042 more ...
Atp7bRatBreast Neoplasms  ISOATP7B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:11802810
Atp7bRatcarcinoma  ISOATP7B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:11802810 and PMID:12216079
Atp7bRatColorectal Neoplasms  ISOATP7B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19296535
Atp7bRatDisease Progression  ISOATP7B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:12216079 more ...
Atp7bRatDyslipidemias  ISOATP7B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17303181
Atp7bRatExperimental Liver Neoplasms  ISOATP7B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:23792645
Atp7bRathead and neck squamous cell carcinoma  ISOATP7B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:12509969
Atp7bRathepatitis  ISOATP7B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:14574444 and PMID:15135151
Atp7bRatInflammation  ISOATP7B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:22945834
Atp7bRatKidney Neoplasms  ISOATP7B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:11509115
Atp7bRatliver cirrhosis  ISOATP7B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25134866
Atp7bRatliver disease  ISOATP7B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21364284
Atp7bRatLiver Neoplasms  ISOATP7B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:11509115
Atp7bRatMouth Neoplasms  ISOATP7B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:12509969
Atp7bRatOvarian Neoplasms  ISOATP7B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:12216079
Atp7bRatProstatic Neoplasms  ISOATP7B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25320179
Atp7bRatsteatotic liver disease  ISOATP7B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17303181
Atp7bRattesticular disease  ISOATP7B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:38761876
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Original Reference(s)
Atp7bRatWilson disease  ISSAtp7b (Mus musculus)13592920OMIM:277900MouseDO 
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Original Reference(s)
Atp7bRatWilson disease  ISOATP7B (Homo sapiens)7240710 OMIM 

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Original Reference(s)
Atp7bRat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of ATP7B mRNA]CTDPMID:31150632
Atp7bRat(-)-epigallocatechin 3-gallate multiple interactionsISOATP7B (Homo sapiens)6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of ATP7B mRNACTDPMID:22079256
Atp7bRat1,1'-azobis(N,N-dimethylformamide) multiple interactionsISOATP7B (Homo sapiens)6480464Diamide promotes the reaction [CLU protein binds to ATP7B protein]CTDPMID:21242307
Atp7bRat17beta-estradiol multiple interactionsISOATP7B (Homo sapiens)6480464[Estradiol co-treated with Progesterone] results in increased expression of ATP7B mRNACTDPMID:20660070
Atp7bRat17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of ATP7B mRNACTDPMID:32145629 and PMID:35192832
Atp7bRat17beta-hydroxy-17-methylestra-4,9,11-trien-3-one increases expressionISOATP7B (Homo sapiens)6480464Metribolone results in increased expression of ATP7B mRNACTDPMID:25320179
Atp7bRat17beta-hydroxy-17-methylestra-4,9,11-trien-3-one multiple interactionsISOATP7B (Homo sapiens)6480464AR protein promotes the reaction [Metribolone results in increased expression of ATP7B mRNA]CTDPMID:25320179
Atp7bRat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of ATP7B mRNACTDPMID:22298810
Atp7bRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of ATP7B mRNACTDPMID:32109520
Atp7bRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOAtp7b (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of ATP7B mRNACTDPMID:21570461
Atp7bRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOATP7B (Homo sapiens)6480464Tetrachlorodibenzodioxin results in decreased expression of ATP7B mRNACTDPMID:21632981
Atp7bRat2,3,7,8-Tetrachlorodibenzofuran decreases expressionEXP 64804642 more ...CTDPMID:32109520
Atp7bRat2,6-dinitrotoluene affects expressionEXP 64804642 and 6-dinitrotoluene affects the expression of ATP7B mRNACTDPMID:21346803
Atp7bRat4,4'-diaminodiphenylmethane affects expressionISOAtp7b (Mus musculus)64804644 and 4'-diaminodiphenylmethane affects the expression of ATP7B mRNACTDPMID:18648102
Atp7bRat4,4'-sulfonyldiphenol decreases methylationISOATP7B (Homo sapiens)6480464bisphenol S results in decreased methylation of ATP7B geneCTDPMID:31601247
Atp7bRat5-fluorouracil increases response to substanceISOATP7B (Homo sapiens)6480464ATP7B mRNA results in increased susceptibility to FluorouracilCTDPMID:18593893
Atp7bRat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of ATP7B mRNACTDPMID:24780913
Atp7bRatacetamide decreases expressionEXP 6480464acetamide results in decreased expression of ATP7B mRNACTDPMID:31881176
Atp7bRatacrylamide increases expressionISOAtp7b (Mus musculus)6480464Acrylamide results in increased expression of ATP7B mRNACTDPMID:30807115
Atp7bRatacrylamide decreases expressionISOATP7B (Homo sapiens)6480464Acrylamide results in decreased expression of ATP7B mRNACTDPMID:32763439

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Biological Process
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Original Reference(s)
Atp7bRatcellular response to copper ion  IEP 11341682 RGD 
Atp7bRatcellular response to copper ion  IMP 11341682 RGD 
Atp7bRatcellular response to manganese ion  IEP 11341682 RGD 
Atp7bRatcircadian rhythm  IEP 1599396 RGD 
Atp7bRatcopper ion export  IMP 11341682 RGD 
Atp7bRatcopper ion export involved_inIBAMGI:99400 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Atp7bRatcopper ion import involved_inIEAUniProtKB:P35670 and ensembl:ENSP000002428391600115GO_REF:0000107EnsemblGO_REF:0000107
Atp7bRatcopper ion import involved_inIBAMGI:99400 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Atp7bRatcopper ion import involved_inISOATP7B (Homo sapiens)1624291 PMID:16472602RGDPMID:16472602
Atp7bRatcopper ion transmembrane transport involved_inIEAARBA:ARBA000276631600115GO_REF:0000117UniProtGO_REF:0000117
Atp7bRatcopper ion transport involved_inISOATP7B (Homo sapiens)1624291UniProtKB:P38995 more ...RGDPMID:12572677 more ...
Atp7bRatcopper ion transport involved_inIEAUniProtKB:P35670 and ensembl:ENSP000002428391600115GO_REF:0000107EnsemblGO_REF:0000107
Atp7bRatcopper ion transport acts_upstream_of_or_withinIEAUniProtKB:Q64446 and ensembl:ENSMUSP000000067421600115GO_REF:0000107EnsemblGO_REF:0000107
Atp7bRatcopper ion transport acts_upstream_of_or_withinISOAtp7b (Mus musculus)1624291MGI:1856220 PMID:11085952 more ...RGDPMID:11085952 more ...
Atp7bRatcopper ion transport involved_inIEAUniProtKB-KW:KW-01871600115GO_REF:0000043UniProtGO_REF:0000043
Atp7bRatestablishment of localization in cell acts_upstream_of_or_withinIEAUniProtKB:Q64446 and ensembl:ENSMUSP000000067421600115GO_REF:0000107EnsemblGO_REF:0000107
Atp7bRatestablishment of localization in cell acts_upstream_of_or_withinISOAtp7b (Mus musculus)1624291MGI:1856220 PMID:11085952RGDPMID:11085952
Atp7bRatintracellular copper ion homeostasis involved_inIBAFB:FBgn0030343 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Atp7bRatintracellular copper ion homeostasis acts_upstream_of_or_withinIEAUniProtKB:Q64446 and ensembl:ENSMUSP000000067421600115GO_REF:0000107EnsemblGO_REF:0000107
Atp7bRatintracellular copper ion homeostasis acts_upstream_of_or_withinISOAtp7b (Mus musculus)1624291MGI:1856220 more ...RGDPMID:10441329 more ...
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Cellular Component
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Original Reference(s)
Atp7bRatapical part of cell  IDA 1581816 RGD 
Atp7bRatbasolateral plasma membrane  IDA 11341682 RGD 
Atp7bRatbasolateral plasma membrane located_inISOATP7B (Homo sapiens)1624291 PMID:15269005RGDPMID:15269005
Atp7bRatbasolateral plasma membrane located_inIEAUniProtKB:P35670 and ensembl:ENSP000002428391600115GO_REF:0000107EnsemblGO_REF:0000107
Atp7bRatbicellular tight junction  IDA 2292671 RGD 
Atp7bRatcytoplasmic vesicle located_inISOATP7B (Homo sapiens)1624291 PMID:16472602RGDPMID:16472602
Atp7bRatcytoplasmic vesicle located_inIEAUniProtKB:P35670 and ensembl:ENSP000002428391600115GO_REF:0000107EnsemblGO_REF:0000107
Atp7bRatendosome located_inIEAUniProtKB-KW:KW-09671600115GO_REF:0000043UniProtGO_REF:0000043
Atp7bRatGolgi apparatus located_inISOATP7B (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Atp7bRatGolgi apparatus located_inIEAUniProtKB:P35670 and ensembl:ENSP000002428391600115GO_REF:0000107EnsemblGO_REF:0000107
Atp7bRatGolgi apparatus located_inIEAUniProtKB-SubCell:SL-01321600115GO_REF:0000044UniProtGO_REF:0000044
Atp7bRatGolgi apparatus located_inIEAUniProtKB-KW:KW-03331600115GO_REF:0000043UniProtGO_REF:0000043
Atp7bRatlate endosome  IDA 1599391 RGD 
Atp7bRatlate endosome located_inIEAUniProtKB-SubCell:SL-01521600115GO_REF:0000044UniProtGO_REF:0000044
Atp7bRatlate endosome located_inISOATP7B (Homo sapiens)1624291 PMID:15681833RGDPMID:15681833
Atp7bRatlate endosome located_inIEAUniProtKB:P35670 and ensembl:ENSP000002428391600115GO_REF:0000107EnsemblGO_REF:0000107
Atp7bRatmembrane located_inIEAUniProtKB-SubCell:SL-01621600115GO_REF:0000044UniProtGO_REF:0000044
Atp7bRatmembrane located_inIEAUniProtKB:Q64446 and ensembl:ENSMUSP000000067421600115GO_REF:0000107EnsemblGO_REF:0000107
Atp7bRatmembrane located_inIEAUniRule:UR0001697781600115GO_REF:0000104UniProtGO_REF:0000104
Atp7bRatmembrane located_inIEAInterPro:IPR001757 and InterPro:IPR0272561600115GO_REF:0000002InterProGO_REF:0000002
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Molecular Function
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Atp7bRatATP binding enablesIEAUniRule:UR0001697781600115GO_REF:0000104UniProtGO_REF:0000104
Atp7bRatATP binding enablesIEAUniProtKB:P35670 and ensembl:ENSP000002428391600115GO_REF:0000107EnsemblGO_REF:0000107
Atp7bRatATP binding enablesIEAUniProtKB-KW:KW-00671600115GO_REF:0000043UniProtGO_REF:0000043
Atp7bRatATP binding enablesIEAInterPro:IPR0017571600115GO_REF:0000002InterProGO_REF:0000002
Atp7bRatATP binding enablesISOATP7B (Homo sapiens)1624291 PMID:15205462 and PMID:16567646RGDPMID:15205462 and PMID:16567646
Atp7bRatATP hydrolysis activity enablesIEAInterPro:IPR0017571600115GO_REF:0000002InterProGO_REF:0000002
Atp7bRatATPase-coupled monoatomic cation transmembrane transporter activity enablesIEAInterPro:IPR0272561600115GO_REF:0000002InterProGO_REF:0000002
Atp7bRatcopper ion binding enablesIEAUniProtKB:P35670 and ensembl:ENSP000002428391600115GO_REF:0000107EnsemblGO_REF:0000107
Atp7bRatcopper ion binding  IDA 1581812 RGD 
Atp7bRatcopper ion binding enablesIBAPANTHER:PTN000642961 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Atp7bRatcopper ion binding enablesISOATP7B (Homo sapiens)1624291 PMID:12029094 and PMID:14709553RGDPMID:12029094 and PMID:14709553
Atp7bRatcopper ion binding enablesIEAInterPro:IPR0061221600115GO_REF:0000002InterProGO_REF:0000002
Atp7bRatcopper ion transmembrane transporter activity  IDA 1599396 RGD 
Atp7bRatcopper ion transmembrane transporter activity enablesIEAUniProtKB:P35670 and ensembl:ENSP000002428391600115GO_REF:0000107EnsemblGO_REF:0000107
Atp7bRatcopper ion transmembrane transporter activity enablesISOATP7B (Homo sapiens)1624291 PMID:26004889RGDPMID:26004889
Atp7bRatmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
Atp7bRatmetal ion binding enablesIEAInterPro:IPR006121 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Atp7bRatnucleotide binding enablesIEAInterPro:IPR0232991600115GO_REF:0000002InterProGO_REF:0000002
Atp7bRatnucleotide binding enablesIEAUniProtKB-KW:KW-05471600115GO_REF:0000043UniProtGO_REF:0000043
Atp7bRatP-type divalent copper transporter activity enablesISOATP7B (Homo sapiens)1624291 PMID:9837819RGDPMID:9837819
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RGD Manual Annotations


  
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Atp7bRatcisplatin drug pathway   ISOATP7B (Homo sapiens)8548473 RGD 

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#
Reference Title
Reference Citation
1. Expression of copper-transporting P-type adenosine triphosphatase (ATP7B) as a prognostic factor in human endometrial carcinoma. Aida T, etal., Gynecol Oncol. 2005 Apr;97(1):41-5.
2. Effects of copper supplementation on copper absorption, tissue distribution, and copper transporter expression in an infant rat model. Bauerly KA, etal., Am J Physiol Gastrointest Liver Physiol. 2005 May;288(5):G1007-14. Epub 2004 Dec 9.
3. Dominant-stable beta-catenin expression causes cell fate alterations and Wnt signaling antagonist expression in a murine granulosa cell tumor model. Boerboom D, etal., Cancer Res. 2006 Feb 15;66(4):1964-73.
4. A novel pineal night-specific ATPase encoded by the Wilson disease gene. Borjigin J, etal., J Neurosci. 1999 Feb 1;19(3):1018-26.
5. Regulation of copper transport crossing brain barrier systems by Cu-ATPases: effect of manganese exposure. Fu X, etal., Toxicol Sci. 2014 Jun;139(2):432-51. doi: 10.1093/toxsci/kfu048. Epub 2014 Mar 10.
6. Therapeutic potential of hepatocyte-like-cells converted from stem cells from human exfoliated deciduous teeth in fulminant Wilson's disease. Fujiyoshi J, etal., Sci Rep. 2019 Feb 7;9(1):1535. doi: 10.1038/s41598-018-38275-y.
7. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
8. NH2-terminal signals in ATP7B Cu-ATPase mediate its Cu-dependent anterograde traffic in polarized hepatic cells. Guo Y, etal., Am J Physiol Gastrointest Liver Physiol. 2005 Nov;289(5):G904-16. Epub 2005 Jun 30.
9. ATP7B copper-regulated traffic and association with the tight junctions: copper excretion into the bile. Hernandez S, etal., Gastroenterology. 2008 Apr;134(4):1215-23. Epub 2008 Jan 17.
10. Copper-transporting P-type adenosine triphosphatase (ATP7B) is expressed in human breast carcinoma. Kanzaki A, etal., Jpn J Cancer Res. 2002 Jan;93(1):70-7.
11. Mammary gland copper transport is stimulated by prolactin through alterations in Ctr1 and Atp7A localization. Kelleher SL and Lonnerdal B, Am J Physiol Regul Integr Comp Physiol. 2006 Oct;291(4):R1181-91. Epub 2006 Jun 1.
12. Marginal maternal Zn intake in rats alters mammary gland Cu transporter levels and milk Cu concentration and affects neonatal Cu metabolism. Kelleher SL and Lonnerdal B, J Nutr. 2003 Jul;133(7):2141-8.
13. Maturational arrest of thymocyte development is caused by a deletion in the receptor-like protein tyrosine phosphatase kappa gene in LEC rats. Kose H, etal., Genomics. 2007 Jun;89(6):673-7. doi: 10.1016/j.ygeno.2007.03.001. Epub 2007 Apr 16.
14. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
15. Abnormal hepatobiliary and circulating lipid metabolism in the Long-Evans Cinnamon rat model of Wilson's disease. Levy E, etal., Life Sci. 2007 Mar 27;80(16):1472-83. Epub 2007 Jan 20.
16. Spontaneous hepatic copper accumulation in Long-Evans Cinnamon rats with hereditary hepatitis. A model of Wilson's disease. Li Y, etal., J Clin Invest. 1991 May;87(5):1858-61. doi: 10.1172/JCI115208.
17. Hereditary hepatitis of LEC rats is controlled by a single autosomal recessive gene. Masuda R, etal., Lab Anim. 1988 Apr;22(2):166-9. doi: 10.1258/002367788780864402.
18. Restoration of copper metabolism and rescue of hepatic abnormalities in LEC rats, an animal model of Wilson disease, by expression of human ATP7B gene. Meng Y, etal., Biochim Biophys Acta 2004 Nov 5;1690(3):208-19.
19. Lentiviral gene transfer ameliorates disease progression in Long-Evans cinnamon rats: an animal model for Wilson disease. Merle U, etal., Scand J Gastroenterol. 2006 Aug;41(8):974-82. doi: 10.1080/00365520600554790.
20. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
1 to 20 of 38 rows
PMID:1588441   PMID:2845190   PMID:6863890   PMID:8040371   PMID:8257436   PMID:9392450   PMID:9465110   PMID:9484715   PMID:9837819   PMID:10441329   PMID:11085952   PMID:11237756  
PMID:12029094   PMID:12572677   PMID:14709553   PMID:15205462   PMID:15269005   PMID:15634671   PMID:15681833   PMID:15950762   PMID:16436657   PMID:16472602   PMID:16567646   PMID:16939419  
PMID:16964378   PMID:17987273   PMID:18637198   PMID:19946888   PMID:20836889   PMID:22130675   PMID:25378584   PMID:26004889   PMID:34800366  



Atp7b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81676,654,725 - 76,726,092 (+)NCBIGRCr8
mRatBN7.21669,952,286 - 70,024,404 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1669,951,778 - 70,023,636 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1675,225,956 - 75,297,317 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01678,664,533 - 78,736,202 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01673,913,825 - 73,985,530 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01674,865,516 - 74,944,935 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1674,865,516 - 74,945,286 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01674,495,179 - 74,575,822 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41674,607,988 - 74,680,080 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11674,608,239 - 74,679,614 (+)NCBI
Celera1667,837,288 - 67,908,140 (+)NCBICelera
RH 3.4 Map16664.21RGD
Cytogenetic Map16q12.5NCBI
ATP7B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381351,932,669 - 52,012,132 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1351,930,436 - 52,012,125 (-)EnsemblGRCh38hg38GRCh38
GRCh371352,506,805 - 52,586,268 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361351,404,806 - 51,483,631 (-)NCBINCBI36Build 36hg18NCBI36
Build 341351,404,805 - 51,483,631NCBI
Celera1333,555,444 - 33,634,269 (-)NCBICelera
Cytogenetic Map13q14.3NCBI
HuRef1333,295,317 - 33,374,147 (-)NCBIHuRef
CHM1_11352,473,433 - 52,553,190 (-)NCBICHM1_1
T2T-CHM13v2.01351,147,339 - 51,226,948 (-)NCBIT2T-CHM13v2.0
Atp7b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39822,482,799 - 22,550,347 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl822,482,801 - 22,550,321 (-)EnsemblGRCm39 Ensembl
GRCm38821,992,783 - 22,060,074 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl821,992,785 - 22,060,305 (-)EnsemblGRCm38mm10GRCm38
MGSCv37823,104,820 - 23,170,546 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36823,459,893 - 23,525,619 (-)NCBIMGSCv36mm8
Celera823,490,671 - 23,556,555 (-)NCBICelera
Cytogenetic Map8A2NCBI
cM Map810.78NCBI
Atp7b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554315,229,126 - 5,269,616 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554315,228,395 - 5,297,120 (-)NCBIChiLan1.0ChiLan1.0
ATP7B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21453,366,970 - 53,447,808 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11352,012,774 - 52,091,309 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01333,063,698 - 33,144,528 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11351,808,491 - 51,888,488 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1351,810,555 - 51,851,839 (-)Ensemblpanpan1.1panPan2
ATP7B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.122162,474 - 225,599 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl22191,888 - 225,266 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha22227,530 - 260,908 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.022144,381 - 208,578 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl22163,718 - 208,552 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12295,838 - 129,431 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.022145,387 - 179,042 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.022163,429 - 197,022 (+)NCBIUU_Cfam_GSD_1.0
Atp7b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945161,210,231 - 161,278,988 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365654,694,281 - 4,763,773 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365654,694,294 - 4,763,661 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP7B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1115,876,612 - 15,942,064 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11115,892,549 - 15,942,070 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21116,218,277 - 16,263,614 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP7B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1329,817,712 - 29,899,302 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl329,816,860 - 29,899,077 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605713,915,907 - 13,997,411 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp7b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247482,113,094 - 2,205,856 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247482,112,574 - 2,183,994 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Atp7b
512 total Variants

Predicted Target Of
Summary Value
Count of predictions:356
Count of miRNA genes:198
Interacting mature miRNAs:229
Transcripts:ENSRNOT00000058072
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 13 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164239634584729064Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)165571108783402471Rat
1298527Arunc2Aerobic running capacity QTL 22.9exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)166853271675029966Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165272646484729064Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162515279370152793Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat

1 to 10 of 13 rows
RH94694  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21670,022,578 - 70,022,768 (+)MAPPERmRatBN7.2
Rnor_6.01674,943,878 - 74,944,067NCBIRnor6.0
Rnor_5.01674,573,744 - 74,573,933UniSTSRnor5.0
RGSC_v3.41674,679,023 - 74,679,212UniSTSRGSC3.4
Celera1667,907,083 - 67,907,272UniSTS
RH 3.4 Map16664.21UniSTS
Cytogenetic Map16q12.2-q12.4UniSTS
Atp7b  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21669,987,114 - 69,987,972 (+)MAPPERmRatBN7.2
Rnor_6.01674,906,171 - 74,907,028NCBIRnor6.0
Rnor_5.01674,535,834 - 74,536,691UniSTSRnor5.0
RGSC_v3.41674,643,520 - 74,644,377UniSTSRGSC3.4
Celera1667,872,111 - 67,872,968UniSTS
Cytogenetic Map16q12.2-q12.4UniSTS


This gene Atp7b is modified in the following models/strains:




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 9 49 113 91 90 59 25 59 6 216 95 93 45 60 31



Ensembl Acc Id: ENSRNOT00000058072   ⟹   ENSRNOP00000054880
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1669,986,513 - 70,023,636 (+)Ensembl
Rnor_6.0 Ensembl1674,865,516 - 74,944,935 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000089265   ⟹   ENSRNOP00000069905
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1669,973,188 - 70,023,636 (+)Ensembl
Rnor_6.0 Ensembl1674,886,719 - 74,945,286 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109904   ⟹   ENSRNOP00000094594
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1669,951,778 - 70,023,636 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118838   ⟹   ENSRNOP00000086033
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1669,952,286 - 70,023,636 (+)Ensembl
RefSeq Acc Id: NM_012511   ⟹   NP_036643
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81676,654,725 - 76,726,092 (+)NCBI
mRatBN7.21669,952,286 - 70,023,636 (+)NCBI
Rnor_6.01674,865,516 - 74,944,935 (+)NCBI
Rnor_5.01674,495,179 - 74,575,822 (+)NCBI
RGSC_v3.41674,607,988 - 74,680,080 (+)RGD
Celera1667,837,288 - 67,908,140 (+)RGD
Sequence:
RefSeq Acc Id: XM_017599991   ⟹   XP_017455480
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81676,675,876 - 76,726,091 (+)NCBI
mRatBN7.21669,972,856 - 70,024,404 (+)NCBI
Rnor_6.01674,886,737 - 74,944,934 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039094191   ⟹   XP_038950119
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81676,699,248 - 76,726,091 (+)NCBI
mRatBN7.21669,996,812 - 70,023,295 (+)NCBI
RefSeq Acc Id: NP_036643   ⟸   NM_012511
- UniProtKB: Q9JLY3 (UniProtKB/Swiss-Prot),   Q64535 (UniProtKB/Swiss-Prot),   Q63676 (UniProtKB/Swiss-Prot),   Q9QUG4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455480   ⟸   XM_017599991
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JWJ5 (UniProtKB/TrEMBL),   F7FE99 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000054880   ⟸   ENSRNOT00000058072
Ensembl Acc Id: ENSRNOP00000069905   ⟸   ENSRNOT00000089265
RefSeq Acc Id: XP_038950119   ⟸   XM_039094191
- Peptide Label: isoform X2
HMA

Name Modeler Protein Id AA Range Protein Structure
AF-Q64535-F1-model_v2 AlphaFold Q64535 1-1451 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13700195
Promoter ID:EPDNEW_R10719
Type:initiation region
Name:Atp7b_1
Description:ATPase copper transporting beta
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01674,865,497 - 74,865,557EPDNEW


1 to 40 of 52 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-10858 BioCyc
Ensembl Genes ENSRNOG00000012878 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000089265 ENTREZGENE
  ENSRNOT00000109904 ENTREZGENE
Gene3D-CATH 3.30.70.100 UniProtKB/Swiss-Prot
  3.40.1110.10 UniProtKB/Swiss-Prot
  3.40.50.1000 UniProtKB/Swiss-Prot
  Calcium-transporting ATPase, cytoplasmic transduction domain A UniProtKB/Swiss-Prot
InterPro ATPase_P-typ_cyto_dom_N UniProtKB/Swiss-Prot
  ATPase_P-typ_P_site UniProtKB/Swiss-Prot
  ATPase_P-typ_TM_dom_sf UniProtKB/Swiss-Prot
  ATPase_P-typ_transduc_dom_A_sf UniProtKB/Swiss-Prot
  HAD-like_sf UniProtKB/Swiss-Prot
  HAD_sf UniProtKB/Swiss-Prot
  Heavy-metal-associated_CS UniProtKB/Swiss-Prot
  HMA_Cu_ion-bd UniProtKB/Swiss-Prot
  HMA_dom UniProtKB/Swiss-Prot
  HMA_dom_sf UniProtKB/Swiss-Prot
  P-typ_ATPase_IB UniProtKB/Swiss-Prot
  P_typ_ATPase UniProtKB/Swiss-Prot
  P_typ_ATPase_HD_dom UniProtKB/Swiss-Prot
NCBI Gene 24218 ENTREZGENE
PANTHER P-TYPE CATION-TRANSPORTING ATPASE UniProtKB/Swiss-Prot
  P-TYPE CU(+) TRANSPORTER UniProtKB/Swiss-Prot
Pfam E1-E2_ATPase UniProtKB/Swiss-Prot
  HMA UniProtKB/Swiss-Prot
  Hydrolase UniProtKB/Swiss-Prot
PharmGKB ATP7B RGD
PhenoGen Atp7b PhenoGen
PRINTS CATATPASE UniProtKB/Swiss-Prot
  CUATPASEI UniProtKB/Swiss-Prot
PROSITE ATPASE_E1_E2 UniProtKB/Swiss-Prot
  HMA_1 UniProtKB/Swiss-Prot
  HMA_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000012878 RatGTEx
Superfamily-SCOP SSF55008 UniProtKB/Swiss-Prot
  SSF56784 UniProtKB/Swiss-Prot
  SSF81653 UniProtKB/Swiss-Prot
  SSF81665 UniProtKB/Swiss-Prot
UniProt A0A0G2JWJ5 ENTREZGENE, UniProtKB/TrEMBL
1 to 40 of 52 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Atp7b  ATPase copper transporting beta  Atp7b  ATPase, Cu++ transporting, beta polypeptide  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-11-06 Atp7b  ATPase, Cu++ transporting, beta polypeptide    ATPase, Cu++ transporting, beta polypeptide (same as Wilson disease)  Name updated 625702 APPROVED
2002-06-10 Atp7b  ATPase, Cu++ transporting, beta polypeptide (same as Wilson disease)      Symbol and Name status set to approved 70586 APPROVED

Note Type Note Reference
gene_disease deletion of 900 bp of the coding region at the 3' end results in the rat model for Wilson disease 631728
gene_function copper transport ATPase 631728
gene_process necessary component of copper transport pathway 631728