Ankrd17 (ankyrin repeat domain 17) - Rat Genome Database
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Gene: Ankrd17 (ankyrin repeat domain 17) Rattus norvegicus
Analyze
Symbol: Ankrd17
Name: ankyrin repeat domain 17
RGD ID: 1562348
Description: Predicted to have chromatin binding activity. Predicted to be involved in several processes, including blood vessel maturation; defense response to other organism; and positive regulation of intracellular signal transduction. Predicted to localize to chromatin; cytoplasm; and nucleus. Orthologous to human ANKRD17 (ankyrin repeat domain 17); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: ankyrin repeat domain protein 17; ankyrin repeat domain-containing protein 17; LOC289521; RGD1562348; similar to ankyrin repeat domain protein 17 isoform b
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21417,723,239 - 17,862,625 (+)NCBI
Rnor_6.0 Ensembl1419,318,565 - 19,431,515 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01419,291,025 - 19,431,521 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01419,199,983 - 19,337,852 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41419,273,617 - 19,387,067 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1417,114,939 - 17,227,887 (+)NCBICelera
Cytogenetic Map14p22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (ISO)
cytoplasm  (IBA,ISO)
nuclear membrane  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,ISO)

Molecular Function

References

Additional References at PubMed
PMID:19150984   PMID:19619540   PMID:19946888   PMID:22190705   PMID:22328336   PMID:22658674   PMID:23711367  


Genomics

Comparative Map Data
Ankrd17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21417,723,239 - 17,862,625 (+)NCBI
Rnor_6.0 Ensembl1419,318,565 - 19,431,515 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01419,291,025 - 19,431,521 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01419,199,983 - 19,337,852 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41419,273,617 - 19,387,067 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1417,114,939 - 17,227,887 (+)NCBICelera
Cytogenetic Map14p22NCBI
ANKRD17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl473,073,376 - 73,258,798 (-)EnsemblGRCh38hg38GRCh38
GRCh38473,073,376 - 73,259,766 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37473,940,502 - 74,124,858 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh37473,939,093 - 74,124,515 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36474,159,366 - 74,343,366 (-)NCBINCBI36hg18NCBI36
Celera471,296,572 - 71,480,590 (-)NCBI
Cytogenetic Map4q13.3NCBI
HuRef469,746,942 - 69,930,806 (-)NCBIHuRef
CHM1_1473,975,543 - 74,160,328 (-)NCBICHM1_1
Ankrd17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39590,375,025 - 90,517,133 (-)NCBIGRCm39mm39
GRCm38590,227,166 - 90,368,693 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl590,227,166 - 90,366,577 (-)EnsemblGRCm38mm10GRCm38
MGSCv37590,656,191 - 90,795,211 (-)NCBIGRCm37mm9NCBIm37
MGSCv36591,302,365 - 91,441,385 (-)NCBImm8
Celera588,385,430 - 88,526,430 (-)NCBICelera
Cytogenetic Map5E1NCBI
Ankrd17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955447259,655 - 376,147 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955447259,654 - 376,147 (+)NCBIChiLan1.0ChiLan1.0
ANKRD17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1456,769,448 - 57,440,809 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl456,770,798 - 57,439,365 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0450,939,013 - 51,124,185 (+)NCBIMhudiblu_PPA_v0panPan3
ANKRD17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1361,893,951 - 62,012,404 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11361,892,872 - 62,046,625 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Ankrd17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365982,191,604 - 2,338,832 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKRD17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl869,360,649 - 69,531,286 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1869,360,641 - 69,531,418 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2873,361,462 - 73,453,165 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ANKRD17
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1721,536,241 - 21,719,320 (-)NCBI
ChlSab1.1 Ensembl721,535,409 - 21,683,246 (-)Ensembl
Ankrd17
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473534,337,722 - 34,516,891 (+)NCBI

Position Markers
RH127459  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01419,429,592 - 19,429,774NCBIRnor6.0
Rnor_5.01419,335,923 - 19,336,105UniSTSRnor5.0
RGSC_v3.41419,385,138 - 19,385,320UniSTSRGSC3.4
Celera1417,225,958 - 17,226,140UniSTS
RH 3.4 Map14243.2UniSTS
Cytogenetic Map14p22UniSTS
BI291183  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01419,375,821 - 19,375,970NCBIRnor6.0
Rnor_5.01419,282,152 - 19,282,301UniSTSRnor5.0
RGSC_v3.41419,330,873 - 19,331,022UniSTSRGSC3.4
Celera1417,172,198 - 17,172,347UniSTS
RH 3.4 Map14226.9UniSTS
Cytogenetic Map14p22UniSTS
AI598408  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01419,327,369 - 19,327,525NCBIRnor6.0
Rnor_5.01419,233,700 - 19,233,856UniSTSRnor5.0
RGSC_v3.41419,282,421 - 19,282,577UniSTSRGSC3.4
Celera1417,123,735 - 17,123,891UniSTS
RH 3.4 Map14226.7UniSTS
Cytogenetic Map14p22UniSTS
RH124614  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01419,430,430 - 19,430,686NCBIRnor6.0
Rnor_5.01419,336,761 - 19,337,017UniSTSRnor5.0
RGSC_v3.41419,385,976 - 19,386,232UniSTSRGSC3.4
Celera1417,226,796 - 17,227,052UniSTS
Cytogenetic Map14p22UniSTS
G34499  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01419,414,466 - 19,414,574NCBIRnor6.0
Rnor_5.01419,320,797 - 19,320,905UniSTSRnor5.0
RGSC_v3.41419,369,518 - 19,369,626UniSTSRGSC3.4
Celera1417,210,846 - 17,210,954UniSTS
Cytogenetic Map14p22UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14127597761Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14127597761Rat
619619Rf4Renal disease susceptibility QTL 44.10.002total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14134403399Rat
9589814Gluco67Glucose level QTL 674.540.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14141333960Rat
7411573Bw139Body weight QTL 1394.70.001body mass (VT:0001259)body weight gain (CMO:0000420)14141333960Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14142766285Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)14483323319909932Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14483323319909932Rat
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14483323323004027Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14483323326466248Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14483323333040042Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14975643572854397Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin141053997755539977Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)141053997755539977Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)141072926861873323Rat
2302277Gluco38Glucose level QTL 385.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141268042430155192Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1412680424106641756Rat
631212Bw5Body weight QTL55.43retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)141268061332593926Rat
1300140Srn3Serum renin concentration QTL 33.19blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)141633698833163485Rat
631528Scl11Serum cholesterol level QTL 114.9blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)141915991938289187Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141916189343957503Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141919154143957628Rat
61413Eae10Experimental allergic encephalomyelitis QTL 103.5nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)141919166419909740Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:665
Count of miRNA genes:270
Interacting mature miRNAs:358
Transcripts:ENSRNOT00000068682
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 42 54 38 19 38 8 10 74 35 40 11 8
Low 1 3 3 3 1 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001105999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000068682   ⟹   ENSRNOP00000059864
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1419,318,565 - 19,431,515 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000086542   ⟹   ENSRNOP00000069642
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1419,319,299 - 19,429,637 (+)Ensembl
RefSeq Acc Id: NM_001105999   ⟹   NP_001099469
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21417,749,655 - 17,862,625 (+)NCBI
Rnor_6.01419,318,565 - 19,431,521 (+)NCBI
Rnor_5.01419,199,983 - 19,337,852 (+)NCBI
RGSC_v3.41419,273,617 - 19,387,067 (+)RGD
Celera1417,114,939 - 17,227,887 (+)RGD
Sequence:
RefSeq Acc Id: XM_006250763   ⟹   XP_006250825
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21417,723,239 - 17,861,841 (+)NCBI
Rnor_6.01419,291,025 - 19,430,737 (+)NCBI
Rnor_5.01419,199,983 - 19,337,852 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250764   ⟹   XP_006250826
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21417,723,239 - 17,861,841 (+)NCBI
Rnor_6.01419,291,025 - 19,430,737 (+)NCBI
Rnor_5.01419,199,983 - 19,337,852 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250765   ⟹   XP_006250827
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21417,723,239 - 17,861,841 (+)NCBI
Rnor_6.01419,291,026 - 19,430,737 (+)NCBI
Rnor_5.01419,199,983 - 19,337,852 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250766   ⟹   XP_006250828
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21417,749,520 - 17,861,841 (+)NCBI
Rnor_6.01419,318,443 - 19,430,737 (+)NCBI
Rnor_5.01419,199,983 - 19,337,852 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250767   ⟹   XP_006250829
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01419,339,733 - 19,430,737 (+)NCBI
Rnor_5.01419,199,983 - 19,337,852 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250768   ⟹   XP_006250830
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21417,723,239 - 17,861,841 (+)NCBI
Rnor_6.01419,291,029 - 19,430,737 (+)NCBI
Rnor_5.01419,199,983 - 19,337,852 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250769   ⟹   XP_006250831
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21417,723,239 - 17,861,841 (+)NCBI
Rnor_6.01419,291,029 - 19,430,737 (+)NCBI
Rnor_5.01419,199,983 - 19,337,852 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250770   ⟹   XP_006250832
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21417,723,239 - 17,861,841 (+)NCBI
Rnor_6.01419,291,127 - 19,430,737 (+)NCBI
Rnor_5.01419,199,983 - 19,337,852 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770011   ⟹   XP_008768233
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21417,749,519 - 17,861,841 (+)NCBI
Rnor_6.01419,318,443 - 19,430,737 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599098   ⟹   XP_017454587
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21417,723,239 - 17,861,841 (+)NCBI
Rnor_6.01419,291,025 - 19,430,737 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039091676   ⟹   XP_038947604
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21417,723,239 - 17,861,841 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001099469   ⟸   NM_001105999
- UniProtKB: D4A0B4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250825   ⟸   XM_006250763
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006250826   ⟸   XM_006250764
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006250830   ⟸   XM_006250768
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006250831   ⟸   XM_006250769
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006250827   ⟸   XM_006250765
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006250832   ⟸   XM_006250770
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006250828   ⟸   XM_006250766
- Peptide Label: isoform X5
- UniProtKB: A0A0G2JVW3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250829   ⟸   XM_006250767
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_008768233   ⟸   XM_008770011
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017454587   ⟸   XM_017599098
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: ENSRNOP00000059864   ⟸   ENSRNOT00000068682
RefSeq Acc Id: ENSRNOP00000069642   ⟸   ENSRNOT00000086542
RefSeq Acc Id: XP_038947604   ⟸   XM_039091676
- Peptide Label: isoform X3
Protein Domains
ANK_REP_REGION

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Damaging Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
14 19312919 19312920 T G snv FHH/EurMcwi (MCW), SR/JrHsd (MCW)
14 19320834 19320835 T A snv LEC/Tj (KyushuU)


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
14 19377814 19377815 G A snv LEW/NCrlBR (RGD)
14 19427797 19427798 C A snv WKY/NHsd (RGD)


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
14 19330538 19330539 G A snv SS/JrHsdMcwi (MCW)
14 19361640 19361641 T G snv FHH/EurMcwi (MCW), SR/JrHsd (MCW)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562348 AgrOrtholog
Ensembl Genes ENSRNOG00000002940 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000059864 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000069642 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000068682 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000086542 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
  3.30.1370.10 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_dom UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  KH_dom UniProtKB/TrEMBL
  KH_dom_type_1 UniProtKB/TrEMBL
  KH_dom_type_1_sf UniProtKB/TrEMBL
KEGG Report rno:289521 UniProtKB/TrEMBL
NCBI Gene 289521 ENTREZGENE
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
  KH_1 UniProtKB/TrEMBL
PhenoGen Ankrd17 PhenoGen
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  SM00322 UniProtKB/TrEMBL
Superfamily-SCOP ANK UniProtKB/TrEMBL
  SSF54791 UniProtKB/TrEMBL
UniProt A0A0G2JVW3 ENTREZGENE, UniProtKB/TrEMBL
  D4A0B4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-29 Ankrd17  ankyrin repeat domain 17  RGD1562348_predicted  similar to ankyrin repeat domain protein 17 isoform b (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1562348_predicted  similar to ankyrin repeat domain protein 17 isoform b (predicted)  LOC289521  similar to ankyrin repeat domain protein 17 isoform b  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC289521  similar to ankyrin repeat domain protein 17 isoform b      Symbol and Name status set to provisional 70820 PROVISIONAL