Scl11 QTL Report (Rattus norvegicus) - Rat Genome Database
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QTL: Scl11 (Serum cholesterol level QTL 11) Rattus norvegicus

Symbol: Scl11
Name: Serum cholesterol level QTL 11
RGD ID: 631528
Trait: blood cholesterol amount   (VT:0000180)    
Measurement Type: blood total cholesterol level   (CMO:0000051)    
LOD Score: 4.9
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01419,159,919 - 38,289,187RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01419,067,260 - 38,099,442RGDRnor5.0
RGSC_v3.41419,110,728 - 38,152,541RGDRGSC3.4
RGSC_v3.11419,110,728 - 38,158,382RGD
Cross Type: backcross
Strains Crossed: SHR/Mol Wild/K 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
SHR/Mol  (IEA)
Wild/K  (IEA)

References

References - curated
1. Kloting I, etal., Biochem Biophys Res Commun 2001 Jun 29;284(5):1126-33.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
69432Ugt2a1UDP glucuronosyltransferase family 2 member A1142219297022217094Rat
2065Afpalpha-fetoprotein141914175519159919Rat
2085Albalbumin141917627519191793Rat
3284Pdgfraplatelet derived growth factor receptor alpha143552792635581130Rat
61981Csn2casein beta142197227421979511Rat
2101Ambnameloblastin142123988721252534Rat
3937Ugt2b37UDP-glucuronosyltransferase 2 family, member 37142249508422534865Rat
620066Paicsphosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase143356388433580944Rat
70513Gnrhrgonadotropin releasing hormone receptor142348046223498450Rat
2965Kdrkinase insert domain receptor143472767734787127Rat
3953Smr3bsubmaxillary gland androgen regulated protein 3B142149021621709077Rat
68388Nmuneuromedin U143435368334381968Rat
61990Csn3casein kappa142180373821810291Rat
620667Dckdeoxycytidine kinase142093544220952939Rat
620831Epha5EPH receptor A5142558931225958258Rat
2667GcGC, vitamin D binding protein142026702320302577Rat
708417Ugt2b7UDP glucuronosyltransferase family 2 member B7142259710322619968Rat
620168Npffr2neuropeptide FF receptor 2142014848520193577Rat
620973Tectec protein tyrosine kinase143791888438027953Rat
620568KitKIT proto-oncogene receptor tyrosine kinase143507213135149638Rat
621706Ythdc1YTH domain containing 1142297183423002326Rat
708534Sult1b1sulfotransferase family 1B member 1142214241222155246Rat
620983Oprpnopiorphin prepropeptide142133846421353533Rat
621152Csn1s2acasein alpha s2-like A142193085821944921Rat
620491Sult1d1sulfotransferase family 1D, member 1142210741822126011Rat
621069RestRE1-silencing transcription factor143313198533152019Rat
620271Clockclock circadian regulator143441822634502218Rat
68936Slc4a4solute carrier family 4 member 4142047625820817042Rat
620237Ppatphosphoribosyl pyrophosphate amidotransferase143358054133614919Rat
3954Vcsa2variable coding sequence A2142155848921564115Rat
1304939Exoc1exocyst complex component 1143413221034192296Rat
621841HopxHOP homeobox143335480333362547Rat
1302967Tmprss11ctransmembrane protease, serine 11C142340571723461384Rat
1303337Arl9ADP-ribosylation factor like GTPase 9143343680333447516Rat
621815Cnga1cyclic nucleotide gated channel subunit alpha 1143815577138171107Rat
1304608Tecrltrans-2,3-enoyl-CoA reductase-like142666285126735878Rat
628623Ugt2b15UDP glucuronosyltransferase family 2 member B15142237542822486291Rat
1303278Tmprss11btransmembrane serine protease 11B142410376824125260Rat
620895Ugt2b35UDP glucuronosyltransferase 2 family, polypeptide B35142255363322591461Rat
620836Adgrl3adhesion G protein-coupled receptor L3142836217629226085Rat
620592Cabs1calcium binding protein, spermatid associated 1142174629421748356Rat
708541Ugt2b17UDP glucuronosyltransferase family 2 member B17142272439922736148Rat
1305114Mob1bMOB kinase activator 1B142096005220992753Rat
727972Zar1zygote arrest 1143775757937764389Rat
735208Spata18spermatogenesis associated 18143708152937108245Rat
2430Csn1s1casein alpha s1142199345022009308Rat
1308540Utp3UTP3, small subunit processome component142115399821155652Rat
1303099Rasl11bRAS-like family 11 member B143655035336554574Rat
1306446Tmprss11gtransmembrane protease, serine 11G142316663323207327Rat
3776Sult1e1sulfotransferase family 1E member 1142207086122089264Rat
1306094Lrrc66leucine rich repeat containing 66143712871537153890Rat
1308324Uba6ubiquitin-like modifier activating enzyme 6142350762823571446Rat
1309278Chic2cysteine-rich hydrophobic domain 2143568365735718005Rat
1308828Srd5a3steroid 5 alpha-reductase 3143455476934570423Rat
1308444Ugt2a3UDP glucuronosyltransferase family 2 member A3142225150722267899Rat
1308159Lnx1ligand of numb-protein X 1143604713636149740Rat
1310750Adamts3ADAM metallopeptidase with thrombospondin type 1, motif 3141986627820072896Rat
1311593Slain2SLAIN motif family, member 2143780234737880571Rat
1310422Dcun1d4defective in cullin neddylation 1 domain containing 4143721072137294517Rat
1310858Grsf1G-rich RNA sequence binding factor 1142103999021056413Rat
1311135Aasdhaminoadipate-semialdehyde dehydrogenase143361999033647268Rat
1310726Cep135centrosomal protein 135143405216834115763Rat
1311575Cracdcapping protein inhibiting regulator of actin dynamics143364998933783794Rat
1311584Stap1signal transducing adaptor family member 1142357540023604984Rat
1306201Igfbp7insulin-like growth factor binding protein 7143301030033070193Rat
1309477Polr2bRNA polymerase II subunit B143307010433107792Rat
1306481TxkTXK tyrosine kinase143802980938085822Rat
1311309FrylFRY like transcription coactivator143755110937757511Rat
1310092Nipal1NIPA-like domain containing 1143810402738128038Rat
1310958Cwh43cell wall biogenesis 43 C-terminal homolog143731547937361728Rat
1309536Slc10a4solute carrier family 10, member 4143776483937770059Rat
1310155Jchainjoining chain of multimeric IgA and IgM142117684121183731Rat
1306796Enamenamelin142119463521219529Rat
1308047Gsx2GS homeobox 2143565098535652709Rat
1309336Fip1l1factor interacting with PAPOLA and CPSF1143615038136208395Rat
1309989Ugt2b10UDP glucuronosyltransferase 2 family, polypeptide B10142280613222826890Rat
1306983Tmem165transmembrane protein 165143450303734528262Rat
1310384Prr27proline rich 27142188245421898651Rat
620654Tmprss11dtransmembrane serine protease 11D142333093323392993Rat
1561381RGD1561381similar to microsomal glutathione S-transferase 3142116379121164435Rat
1564808Usp46ubiquitin specific peptidase 46143668713436755360Rat
1564787Srp72signal recognition particle 72143344758333453788Rat
1561698Tmprss11etransmembrane serine protease 11E142306100523114471Rat
1563299Smr3asubmaxillary gland androgen regulated protein 3A142170333621709074Rat
1562708Scfd2sec1 family domain containing 2143621600236543661Rat
1561589RGD1561589similar to RIKEN cDNA 5730434I03 gene143225776832258666Rat
1565664RGD1565664similar to UDP-glucuronosyltransferase 2B1 precursor, microsomal (UDPGTR-2)142276811822777917Rat
1565048RGD1565048similar to 60S ribosomal protein L9142558461125585237Rat
1561883Odamodontogenic, ameloblast associated142184299021852216Rat
1559459RGD1559459similar to Expressed sequence AI788959142293245422955663Rat
1303061Cenpccentromere protein C142361190923670314Rat
1302956Spink2serine peptidase inhibitor, Kazal type 2143324727833253913Rat
1359201Nfxl1nuclear transcription factor, X-box binding-like 1143819246238233852Rat
1359468Fdcspfollicular dendritic cell secreted protein142181899921823687Rat
1562348Ankrd17ankyrin repeat domain 17141929102519431521Rat
628794Csn1s2bcasein alpha s2-like B142189995421916068Rat
1309071Dzip1-ps1DAZ interacting protein 1, pseudogene 1142187693121878989Rat
1562394RGD1562394similar to ribosomal protein L30142203157622031980Rat
727887Corincorin, serine peptidase143824737938474931Rat
1359549Ociad1OCIA domain containing 1143745802337475485Rat
1562571Thegltheg spermatid protein-like143338951133431862Rat
1560675Tmprss11ftransmembrane serine protease 11F142398241524080477Rat
1559547Cox18cytochrome c oxidase assembly factor COX18141943472819446379Rat
1565242Rufy3RUN and FYVE domain containing 3142105857521144775Rat
1565243LOC498339LRRGT00190142045609920474728Rat
1359460Noa1nitric oxide associated 1143310786833124172Rat
1592953Gpx4-ps3glutathione peroxidase 4, pseudogene 3143790445337905104Rat
1589974Stathstatherin142195701321960871Rat
1559712Pdcl2phosducin-like 2143438433834404920Rat
1587531LOC689849similar to heat shock protein 1, alpha142280207922804253Rat
1585182LOC690029similar to Phosphoglycerate kinase 1142506706725068269Rat
1587539LOC689841similar to Rho GTPase activating protein 11A142278632922795349Rat
1584043LOC690125similar to Ferritin light chain 1 (Ferritin L subunit 1)142806988028075658Rat
1587481LOC689899similar to 60S ribosomal protein L23a142412959824130134Rat
1595834LOC364228similar to T-cell activation kelch repeat protein142229380122303486Rat
1591303Exoc1lexocyst complex component 1 like143419215534219497Rat
1592356Amtnamelotin142128248821301966Rat
1588690LOC689798similar to UDP-glucuronosyltransferase142264749822654974Rat
1597019LOC501910similar to Importin-7 (Imp7) (Ran-binding protein 7) (RanBP7)143170458131708019Rat
1598162LOC679908similar to CG1249-PA143516123535161612Rat
1597128LOC364143similar to WW domain binding protein 11143685051736852507Rat
1597129LOC364127similar to peptidylprolyl isomerase D142174026621741405Rat
1597130LOC364125similar to 60S ribosomal protein L8141926250219263247Rat
1594202Sgcbsarcoglycan, beta143711319437128623Rat
1596322Tmprss11atransmembrane serine protease 11A142322673523284515Rat
2318302LOC100362385sperm motility kinase-like142433431624518000Rat
2319541Ociad2OCIA domain containing 2143743299937449425Rat
2322951LOC100363494ubiquitin B-like143686577136866058Rat
2321603LOC100364155hypothetical LOC100364155142232599922346301Rat
2321083Ppial4dpeptidylprolyl isomerase A (cyclophilin A)-like 4D142270690622707648Rat
2321178LOC100364381hypothetical LOC100364381142404760524048475Rat
2324284LOC100362674phytoceramidase, alkaline-like142775903827767250Rat
2324321LOC100362637myelin-associated oligodendrocytic basic protein-like142544543625445909Rat
2323837LOC100359456eukaryotic translation initiation factor 5-like143736847937370778Rat
2324510LOC100362544dihydrouridine synthase 4-like142513587725136638Rat
6487121LOC100912459MKL/myocardin-like protein 2-like143037363230385366Rat
6489076Dancrdifferentiation antagonizing non-protein coding RNA143666403636665016Rat
6495044LOC100911104lymphocyte antigen 6B-like142286851822872403Rat
6486918LOC100912428uncharacterized LOC100912428143036893230374219Rat
6501805LOC100909780nucleolin-like143347426533475567Rat
6502012LOC100909747signal recognition particle 72 kDa protein-like143344758333453766Rat
6499293LOC100910308multifunctional protein ADE2-like143396825833977367Rat
6496885LOC100910703heterogeneous nuclear ribonucleoprotein A3-like142266279722665103Rat
6500262LOC100910138serine protease inhibitor Kazal-type 2-like143390683633913448Rat
7498730LOC102551532uncharacterized LOC102551532143317220433176276Rat
7501116LOC102556465histone-binding protein RBBP4-like143567951735682608Rat
7489037Mir6321microRNA 6321142109733821097478Rat
7526663LOC102554948uncharacterized LOC102554948142118794721275520Rat
7540659LOC102554412uncharacterized LOC102554412143656070036592187Rat
7513863LOC102546751uncharacterized LOC102546751142804557328046534Rat
7520032LOC102556008uncharacterized LOC102556008143427328634338251Rat
7662865LOC102551686uncharacterized LOC102551686143330773233314320Rat
7632687LOC102552854uncharacterized LOC102552854143361390033617629Rat
7650474LOC102553031zinc finger and SCAN domain-containing protein 20-like143358451333598874Rat
7666596LOC10255137660S ribosomal protein L19-like142285407622854782Rat
7574976LOC102554235uncharacterized LOC102554235143586183635875438Rat
7623930LOC102549397zinc finger protein 120-like142772760127731053Rat
7624519LOC102553643uncharacterized LOC102553643143496015834968038Rat
7624541LOC102554132uncharacterized LOC102554132141919927019211671Rat
7639012LOC102551742uncharacterized LOC102551742143331921233329749Rat
7568792LOC102554979uncharacterized LOC102554979143698373836987853Rat
7573251LOC102554024platelet-derived growth factor receptor alpha-like143555601635557391Rat
7556651LOC102556376uncharacterized LOC102556376143788065937889996Rat
7573734LOC102556353uncharacterized LOC102556353143441432034452769Rat
7574419LOC102547286uncharacterized LOC102547286143032334030332728Rat
7546956LOC102553856uncharacterized LOC102553856143518188635204762Rat
7560981LOC102554098uncharacterized LOC102554098143572113535722843Rat
7564466LOC102554514uncharacterized LOC102554514143670056436707901Rat
7553273LOC102549966kelch repeat and BTB domain-containing protein 8-like142239726422399534Rat
7553859LOC102554165uncharacterized LOC102554165143584830135855944Rat
7693237LOC102551561lymphocyte antigen 6B-like142288739122888008Rat
7684935LOC102551595uncharacterized LOC102551595143329331333302631Rat
7690127LOC102551339uncharacterized LOC102551339143285545832897232Rat
7696931LOC102554353uncharacterized LOC102554353143601218736014139Rat
9088827LOC103693736uncharacterized LOC103693736142377144823777451Rat
9173188LOC103690248uncharacterized LOC103690248143697162236996251Rat
9104949LOC103692659signal recognition particle 19 kDa protein pseudogene142039969620403283Rat
9152474LOC103692788exocyst complex component 1-like143413221034144229Rat
9193396LOC103692662uncharacterized LOC103692662142055432020559618Rat
9195730LOC103690383UDP-glucuronosyltransferase 2B4-like142273863022743161Rat
9201561LOC10369278560S ribosomal protein L39143303095033031322Rat
9203318LOC103692772UDP-glucuronosyltransferase 2B7 pseudogene142264350822646316Rat
9071312LOC103693755leucine-rich repeat-containing protein 66-like143716119037162827Rat
9220563LOC103692786ran guanine nucleotide release factor pseudogene143301354833029379Rat
9231553LOC103693743uncharacterized LOC103693743143394901733949353Rat
9376224LOC103693742homeodomain-only protein pseudogene143394284433943180Rat
9333881LOC103692775uncharacterized LOC103692775142337864323404386Rat
9250639LOC103692794NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 pseudogene143547271235473331Rat
9364872LOC103693733uncharacterized LOC103693733142151515621534241Rat
9423304LOC103692806uncharacterized LOC103692806143642327736426078Rat
9329768LOC103693735uncharacterized LOC103693735142272026322738093Rat
9434891LOC103693732uncharacterized LOC103693732141918907019189886Rat
9399075LOC103692776uncharacterized LOC103692776142343353423480728Rat
9399890LOC103693734uncharacterized LOC103693734142234644422365795Rat
9437172LOC103693738uncharacterized LOC103693738142676938926776335Rat
9438180LOC103692822uncharacterized LOC103692822143711001537112949Rat
9477837LOC103692809uncharacterized LOC103692809143637756736383032Rat
9444074LOC103692660gem-associated protein 8 pseudogene142058734220591163Rat
9685090Mir193bmicroRNA 193b143033104930331131Rat
11368666LOC108352725uncharacterized LOC108352725142089278120899767Rat
11355448LOC108352740uncharacterized LOC108352740143448134034485413Rat
11434380LOC108352824SMR1 protein-like142160791921612401Rat
11464221LOC10835282760S ribosomal protein L7a-like143426291934264964Rat
11469569LOC108352724uncharacterized LOC108352724142088967120921710Rat
11357190LOC108352731uncharacterized LOC108352731142553317425552366Rat
11358099LOC108352733uncharacterized LOC108352733142823447328243759Rat
11456987LOC108352849small nuclear ribonucleoprotein G pseudogene142975474029755232Rat
11457267LOC108352741uncharacterized LOC108352741143587903435889777Rat
11444872LOC108352826coronin-1B pseudogene143385482233855419Rat
11362928LOC108352851uncharacterized LOC108352851143688608136890512Rat
11446409LOC108352727uncharacterized LOC108352727142184717421858737Rat
11368474LOC108352726uncharacterized LOC108352726142159232221605787Rat
11438225LOC108352732uncharacterized LOC108352732142824378828246479Rat
11438234Trnac-gca38transfer RNA cysteine (anticodon GCA) 38143303159633031667Rat
11446996LOC108348046signal recognition particle subunit SRP72-like143353612333561140Rat
11372249LOC108352738uncharacterized LOC108352738143371372733720816Rat
11432042LOC108352735uncharacterized LOC108352735143325969133281301Rat
11432687LOC108352729uncharacterized LOC108352729142300241523025061Rat
11405419LOC108352841uncharacterized LOC108352841142850129428514261Rat
11405651LOC108352730zinc finger protein 605-like142365594523659246Rat
11405956LOC108348180signal recognition particle subunit SRP72-like143395849533960973Rat
11424981LOC108352737uncharacterized LOC108352737143364748133650937Rat
11355194LOC108352847actin, alpha skeletal muscle-like142377102623771741Rat
11375302LOC108352734uncharacterized LOC108352734143266382332675292Rat
11398312LOC108352739uncharacterized LOC108352739143361002133611560Rat
11387368LOC108352742uncharacterized LOC108352742143696945636973302Rat
11401058LOC108352850uncharacterized LOC108352850143258575732595630Rat
11380862LOC108352728uncharacterized LOC108352728142204751022056580Rat
11503027LOC108352825protein transport protein Sec61 subunit gamma pseudogene142765255227685704Rat
11497443LOC108352848actin, alpha skeletal muscle-like142380475523805462Rat
11510655Trnat-cgu2transfer RNA threonine (anticodon CGU) 2143034170630341777Rat
11518818LOC108352736uncharacterized LOC108352736143344400633444492Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10113D14Mit2194141916170519161893Ratregion
10135D14Wox11135141919154219191664Ratregion
10413D14Wox14126142200984922009966Ratregion
10622D14Mgh3120142026622320266347Ratregion
10623D14Wox12194142027892120279109Ratregion
11482D14Wox13194142156522721565427Ratregion
11482D14Wox13194142155507621555306Ratregion
11483D14Wox17142156520821565418Ratregion
33551D14Mit6191141990974019909932Ratregion
33772D14Mit3100143586752535867619Ratregion
35342D14Rat8132143259392632594049Ratregion
35465D14Rat13125143510791335108019Ratregion
37124D14Rat14200143343274533432941Ratregion
37136D14Rat105237143547662635476841Ratregion
37822D14Rat33220142938484529385065Ratregion
36520D14Rat7168142466885424669027Ratregion
34890D14Rat9130143015505730155192Ratregion
34965D14Rat10176143316331633163485Ratregion
39598D14Rat81202142298589022986118Ratregion
40712D14Rat83228143335142033351654Ratregion
38408D14Rat65129143658503436585142Ratregion
38486D14Rat41140142861022328610358Ratregion
40104D14Rat99237142646600226466248Ratregion
38932D14Rat36145143303991233040042Ratregion
39042D14Rat52135143738286937383013Ratregion
39138D14Rat50232142742047927420736Ratregion
39174D14Rat55219142768634227686562Ratregion
41990D14Arb16120142300390323004027Ratregion
41992D14Arb17190142027889020279110Ratregion
41998D14Arb4246141919147619191720Ratregion
42002D14Arb6300142208891122089228Ratregion
43015D14Rat116146142978957729789723Ratregion
43016D14Rat117126143420134234201485Ratregion
42390D14Rat143119141984782919847953Ratregion
40930D14Rat82211143041230630412508Ratregion
41018D14Rat84115143499854634998672Ratregion
41690D14Rat102200141980987419810068Ratregion
41790D14Rat106245143471694934717185Ratregion
45163D14Got25175141961271019612884Ratregion
45164D14Got26138141978790719788044Ratregion
45165D14Got29133142199400521994137Ratregion
45166D14Got33254142768638427686637Ratregion
45167D14Got32197142637341526373606Ratregion
45168D14Got34163142826315028263317Ratregion
45169D14Got38253142984986929850121Ratregion
45170D14Got36122143041594130416062Ratregion
45171D14Got37176143010494930105125Ratregion
45172D14Got39139143266132032661458Ratregion
45173D14Got89263143279073332790995Ratregion
45174D14Got43134143694009536940228Ratregion
45175D14Got41128143461241534612542Ratregion
45176D14Got40244143542186435422107Ratregion
45177D14Got42253143651438636514633Ratregion
45187D14Got35119142958603429586154Ratregion
60762D14Wox10100141919154119191619Ratregion
60763D14Wox3191142412944224129630Ratregion
60764D14Wox4185143828918738289371Ratregion
625820D14Got90190143772564237725831Ratregion
60059D14Got2791142043610220436192Ratregion
60060D14Got28169142043606520436233Ratregion
60061D14Got30283142128688821287167Ratregion
60063D14Got44153143800840338008555Ratregion
60064D14Got45126143757357437573699Ratregion
60064D14Got45126143756791737568045Ratregion
738055D14Hmgc4247142155505621555302Ratregion
738057D14Hmgc5198142339933623399533Ratregion
738059D14Hmgc3144141930034319300486Ratregion
738061D14Hmgc6155142562224425622682Ratregion
738061D14Hmgc6155142562224425622398Ratregion
66577D14Mco8210142307263823072841Ratregion
66697D14Uia4227142434622224346448Ratregion
67231D14Arb18128142200985322009980Ratregion
1630300D14Got101124143528094735281070Ratregion
1630530D14Wox31290142207130722071596Ratregion
1628668D14Wox20184143558252635582709Ratregion
1641546D14Got102197143738280937383005Ratregion
1633391D14Got130171141961274919612919Ratregion
1634903D14Got119193143809283938093031Ratregion
1635397D14Wox19142208908222089226Ratregion
7205986Ppia150142270699922707148Ratregion
7206714RH35948188143385482033855007Ratregion
5038634BB23255183142105628521056367Ratregion
5036007PMC84675P1646143313696733137612Ratregion
5038904RH127399220142478357824783796Ratregion
5039006RH127459183141942959219429774Ratregion
5037051RH36296127143539810835398234Ratregion
5034153RH141568200143361445833614657Ratregion
5028793RH142349150143775642737756576Ratregion
5028867RH142631195143710633437106529Ratregion
5029311RH144316158143596399935964156Ratregion
5032119RH94451156143552821835528373Ratregion
5026864RH133820209143707904537079253Ratregion
5035130BE096355184142096831720968500Ratregion
5032369C87704114142115413021154243Ratregion
5027147WI-17713156142308753523087690Ratregion
5027293AW557942109143745807237458180Ratregion
5027295C80280115142105598121056095Ratregion
5027297AW557551132142115422421154355Ratregion
5032815RH135403185143306658933066773Ratregion
5032909RH136935183142357936523579547Ratregion
5033017RH137289187143790480637904987Ratregion
5025000AU022345228143312383633124063Ratregion
5025002BB446153103142356827523568377Ratregion
5030321BE105744151142212467122124821Ratregion
5025326RH127888187143396828433968470Ratregion
5025326RH127888187143356400233564188Ratregion
502794338.MMHAP88FLE5.seq158142413788724138044Ratregion
5033467RH138942129142918919029189318Ratregion
5033487RH139013127143726266537262791Ratregion
5025662RH129181191143036581430366004Ratregion
5028253D4Mit35368142609855626098623Ratregion
5028261D5Mit306241143364095533641195Ratregion
5051392AI118071132142253418922534320Ratregion
5055895RH144064138142839882028398957Ratregion
5056659RH144506104142014123120141334Ratregion
5059482BI291183150141937582119375970Ratregion
5055055RH143580112143675508136755192Ratregion
5058012BF386462187143685438536854571Ratregion
5055823RH144023264143797633837976601Ratregion
5058692BE102309169143670103636701204Ratregion
5052273M84607174143553078135530954Ratregion
5058916BF387243175143343702533437199Ratregion
5059036BF393957130143396612133966250Ratregion
5059036BF393957130143356183933561968Ratregion
5052863RH142317154142347888423479037Ratregion
5052961RH142374164143808267138082834Ratregion
5058372BG376722142142105978921059930Ratregion
5053471RH142668209143449606334496271Ratregion
5052857RH142314174143815578138156685Ratregion
5051260RH134531183142106861521068797Ratregion
5054207RH143092126142892325228923377Ratregion
5051757RH94641171143478692634787096Ratregion
5051092RH134435206143712829737128502Ratregion
5040966RH128586219143478673934786957Ratregion
5044388RH1305740142350039323500570Ratregion
5044648RH130724209143614739636147604Ratregion
5046174RH131601187142866058128660767Ratregion
5046266RH131654202142105895321059155Ratregion
5046420RH131742191143810426838104458Ratregion
5044458RH130614194143675359736753789Ratregion
5044508RH130643204142215573322155947Ratregion
5046540RH131812216143614874836149309Ratregion
5047872RH132577182141944618319446364Ratregion
5049022RH133241198142095958920959786Ratregion
5049172RH133327185143455618134556365Ratregion
5046618RH131857220142559134825591567Ratregion
5047962RH132629191143745804937458239Ratregion
5049012RH133235189143443981934440007Ratregion
5049072RH133270180142118396221184141Ratregion
5048048RH132678203143712749937127701Ratregion
5049354RH133432196143312382433124019Ratregion
5049398RH133458184143415168434151867Ratregion
5047124RH132147209142105589021056098Ratregion
5047302RH132249203143364973133649933Ratregion
5048378RH132869186142095623820956423Ratregion
5048406RH132885212142106825821068469Ratregion
5042422RH129425157143396828433968440Ratregion
5042422RH129425157143356400233564158Ratregion
5039990RH128025187143450319334503379Ratregion
5042652RH129562210142197829821979350Ratregion
5039814RH127922217142243839022438607Ratregion
5039814RH127922217142215758222157799Ratregion
5043696RH130174169143413227434132442Ratregion
5071926RH135365189143668448836684676Ratregion
5072036RH135428197143817106338171259Ratregion
5072396RH136825250143615057036151433Ratregion
5074204RH137881177142356820923568385Ratregion
5076506RH139215174143307520033075920Ratregion
5075520RH138641144142215496722155110Ratregion
5076170RH139020176143345211233452287Ratregion
5076638RH139292133143673137436731506Ratregion
5078170RH140184216143731548937315704Ratregion
5078284RH140250197143780338237803578Ratregion
5079916RH141277216143365173333651948Ratregion
5080036RH141346180143802752738027706Ratregion
5080096RH141380200143819422138194420Ratregion
5080098RH141381185142093359020933769Ratregion
5070644RH134622198143612903336129230Ratregion
5073034RH137196180143721079037210969Ratregion
5079304RH140904220143396819633968415Ratregion
5079304RH140904220143356391433564133Ratregion
5073510RH137478213143448366734483879Ratregion
5071242RH134969216142282654022826755Ratregion
5070640RH134619193142295367522953867Ratregion
5070678RH134641193143449954134499733Ratregion
5073424RH137428208143608895936089167Ratregion
5061766AW533278157142149025821490414Ratregion
5061802AW52704392142065992020660011Ratregion
5066638AU048239131143318901133189145Ratregion
5068144AU047322140143147373231473871Ratregion
5068204AU047286264143413749434137727Ratregion
5068594AU047051192143289794132898132Ratregion
5068612AU047039231143082853630828766Ratregion
5068754AU046952108142772576427725871Ratregion
5068852AU046886238142978954029789777Ratregion
5068886AU046864229143602032036020547Ratregion
5068996AU046793201143419676634196966Ratregion
5069748AU029143134142302691423027042Ratregion
5070496Gsh2282143565244035652721Ratregion
5060098BF388492135142298937922989513Ratregion
5060272AW531051184143368086833681051Ratregion
5060344AW531504177142588607825886254Ratregion
5062002AI454088144143450189134502034Ratregion
5063652BE107907170143754642937546598Ratregion
5060436BE110064167142595646925956635Ratregion
5060674BE098844183143414177934141965Ratregion
5063820AW535324176143449846334498638Ratregion
5060204AI072690192143728188737282078Ratregion
5062074BF397398134142860781828607951Ratregion
5063528BF404311215143343702533437239Ratregion
5063562BI289920104143647875036478853Ratregion
5063608BE107836151142859934828599498Ratregion
5062318BE106508190142115401821154207Ratregion
5064422BI302173206142160916921609375Ratregion
5062824BI295036136142112667121126806Ratregion
5064532BF399306173143416027134160443Ratregion
5061240BE111373150143655292536553074Ratregion
5064708BE108365173143313376433133936Ratregion
5061502BE105338153142838918528389337Ratregion
5063246BI301575193143256113232561324Ratregion
5066546AU048293120142477710224777221Ratregion
5061610AA875648157143336234733362503Ratregion
5087052BM389183198143390956633909763Ratregion
5087052BM389183198143325003133250228Ratregion
5087526PMC275467P2208141919176119191968Ratregion
5086425AW529895205142106264421062848Ratregion
5087552PMC312758P2177143358098433581160Ratregion
5089937AU049453267143693593136936197Ratregion
5089313AU049082185143390650733906691Ratregion
5089313AU049082185143324697233247156Ratregion
5083705AI009635205143675294336753147Ratregion
5090713AU049919211143255337632553586Ratregion
5088395AU048544264143474387234744135Ratregion
5088989AU048888125143806182338061947Ratregion
5082669BE119975196143412788234128077Ratregion
5085850AI231703161142095125720951417Ratregion
5084530AI176955135142047971320479847Ratregion
5085228AI598408157141932736919327525Ratregion
5085274AI176044198142093408720934281Ratregion
5083621BI276488217143449832034498536Ratregion
5507587Alb1128141919096719191798Ratregion
5503611UniSTS:465369103141917980319179905Ratregion
5507634UniSTS:1426321417143630715736308573Ratregion
5504885ha3026130142524139325241522Ratregion
5504885ha3026130142499289624993025Ratregion
5505030Gpx40143790448537904986Ratregion
5505835UniSTS:495883239142558982325590061Ratregion
5506047UniSTS:498239426143507272635073151Ratregion
5506869G46840210142069759320697802Ratregion
5506931G54151167143449953834499704Ratregion
5499889UniSTS:235209266142115409021154355Ratregion
5502361RH124614257141943043019430686Ratregion
5503412G34499109141941446619414574Ratregion
5504734PMC86057P4438141919190019192337Ratregion
5501508D14S2921064143448694134488004Ratregion
5501679UniSTS:265677293142270713022707422Ratregion
5501720UniSTS:266988152142594511425945265Ratregion
5502627RH125924233142040254520402776Ratregion
5502847Arhgap11a0142278750722788240Ratregion
6484684D14Uwm13214143025014530250358Ratregion
6484686D14Uwm14262143413484634135107Ratregion
6480636D14Uwm1140143422810934228298Ratregion
6480638D14Uwm2220143621053036210739Ratregion
6480641D14Uwm3298143608142036081717Ratregion
6480643D14Uwm4240143499732534997547Ratregion
6484235D14Uwm5190143604730836047474Ratregion
6484237D14Uwm6389143608281436083192Ratregion
6484239D14Uwm7240143446720834467458Ratregion
6484241D14Uwm8300143490010334900394Ratregion
6484241D14Uwm8300143489979434900394Ratregion
6484243D14Uwm9210143528089535281100Ratregion
6484245D14Uwm10220143545741835457629Ratregion
6484247D14Uwm11190143562412935624308Ratregion
Position Markers

Flank 1: (D14Wox4)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01438,289,187 - 38,289,371NCBI
Rnor_5.01438,099,442 - 38,099,626UniSTS
RGSC_v3.41438,152,541 - 38,152,726RGD
RGSC_v3.41438,152,542 - 38,152,726UniSTS
RGSC_v3.11438,158,382 - 38,158,567RGD
Celera1434,967,653 - 34,967,837UniSTS
Cytogenetic Map14p11UniSTS
Peak: (Gc)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01420,267,023 - 20,302,577 (+)NCBI
Rnor_6.0 Ensembl1420,266,891 - 20,302,581 (+)Ensembl
Rnor_5.01420,173,467 - 20,209,021 (+)NCBI
RGSC_v3.41420,166,243 - 20,197,060 (+)NCBI
RGSC_v3.11420,166,180 - 20,201,613 (+)NCBI
Celera1417,992,337 - 18,027,605 (+)NCBI
Cytogenetic Map14p22NCBI
Flank 2: (Afp)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01419,141,755 - 19,159,919 (-)NCBI
Rnor_6.0 Ensembl1419,141,755 - 19,159,923 (-)Ensembl
Rnor_5.01419,049,096 - 19,067,260 (-)NCBI
RGSC_v3.41419,092,563 - 19,110,728 (-)NCBI
RGSC_v3.11419,092,562 - 19,110,728 (-)NCBI
Celera1416,939,827 - 16,957,879 (-)NCBI
Cytogenetic Map14p22NCBI
RH 3.4 Map14214.49RGD


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14127597761Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14127597761Rat
619619Rf4Renal disease susceptibility QTL 44.10.002total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14134403399Rat
9589814Gluco67Glucose level QTL 674.540.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14141333960Rat
7411573Bw139Body weight QTL 1394.70.001body mass (VT:0001259)body weight gain (CMO:0000420)14141333960Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14142766285Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14222782519230541Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)14483323319909932Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14483323319909932Rat
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14483323323004027Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14483323326466248Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14483323333040042Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14975643572854397Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin141053997755539977Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)141053997755539977Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)141072926861873323Rat
2302277Gluco38Glucose level QTL 385.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141268042430155192Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1412680424106641756Rat
631212Bw5Body weight QTL55.43retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)141268061332593926Rat
1300140Srn3Serum renin concentration QTL 33.19blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)141633698833163485Rat
631528Scl11Serum cholesterol level QTL 114.9blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)141915991938289187Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141916189343957503Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141919154143957628Rat
61413Eae10Experimental allergic encephalomyelitis QTL 103.5nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)141919166419909740Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)142018938665189386Rat
61420Pia6Pristane induced arthritis QTL 64.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)142026622343957628Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)142145756566457565Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143259392686191589Rat
2324617Coatc2Coat color QTL 20.001coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)143303991261783215Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143316331673391571Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Scl11

RGD Curation Notes
Note Type Note Reference
qtl_cross_type backcross  
qtl_general associates with increased serum cholesterol than that of the SHR/Mol 619656