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ONTOLOGY REPORT - ANNOTATIONS

Term:Schaffer collateral - CA1 synapse
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Accession:GO:0098685 term browser browse the term
Definition:A synapse between the Schaffer collateral axon of a CA3 pyramidal cell and a CA1 pyramidal cell.


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Schaffer collateral - CA1 synapse term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abr ABR activator of RhoGEF and GTPase part_of
is_active_in		 ISS
ISO		 GO_REF:0000024
(PMID:20962234)		 UniProt
RGD		 PMID:20962234 GO_REF:0000024 NCBI chr10:61,262,516...61,461,331
Ensembl chr10:61,262,516...61,461,505 		JBrowse link
G Actb actin, beta located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:27840001)		 Ensembl
RGD		 PMID:27840001 GO_REF:0000107 NCBI chr12:11,663,112...11,666,697
Ensembl chr12:11,663,109...11,672,877 		JBrowse link
G Actg1 actin, gamma 1 located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:27840001)		 Ensembl
RGD		 PMID:27840001 GO_REF:0000107 NCBI chr10:105,619,738...105,622,587
Ensembl chr10:105,619,737...105,624,232
Ensembl chr 3:105,619,737...105,624,232 		JBrowse link
G Actg1l1 actin, gamma 1 like 1 located_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 3:72,977,767...72,979,691
Ensembl chr10:105,619,737...105,624,232
Ensembl chr 3:105,619,737...105,624,232
Ensembl chr 3:105,619,737...105,624,232 		JBrowse link
G Adcy1 adenylate cyclase 1 is_active_in ISO (PMID:10482244) RGD PMID:10482244 NCBI chr14:81,911,240...82,020,594
Ensembl chr14:81,911,099...82,028,969 		JBrowse link
G Adcy8 adenylate cyclase 8 located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:10482244)		 Ensembl
RGD		 PMID:10482244 GO_REF:0000107 NCBI chr 7:96,417,310...96,665,911
Ensembl chr 7:96,417,324...96,665,911 		JBrowse link
G Adgrl3 adhesion G protein-coupled receptor L3 is_active_in ISO (PMID:30792275) RGD PMID:30792275 NCBI chr14:26,336,320...27,104,060
Ensembl chr14:26,368,277...27,105,860 		JBrowse link
G Adora2b adenosine A2B receptor is_active_in
located_in		 ISO
IEA		 (PMID:25704806)
GO_REF:0000107		 RGD
Ensembl		 PMID:25704806 GO_REF:0000107 NCBI chr10:46,940,394...46,956,772
Ensembl chr10:46,940,384...46,956,772 		JBrowse link
G Adora3 adenosine A3 receptor is_active_in EXP
IDA		 PMID:8987783 SynGO PMID:8987783 PMID:8987783 RGD:13702310, RGD:13702310 NCBI chr 2:193,352,759...193,392,946
Ensembl chr 2:193,388,713...193,392,357 		JBrowse link
G Adrb1 adrenoceptor beta 1 located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:10595521)		 Ensembl
RGD		 PMID:10595521 GO_REF:0000107 NCBI chr 1:255,771,962...255,774,973
Ensembl chr 1:255,771,597...255,807,259 		JBrowse link
G Adrb2 adrenoceptor beta 2 is_active_in IDA PMID:11441182 SynGO PMID:11441182 RGD:1598758 NCBI chr18:55,642,459...55,644,501
Ensembl chr18:55,502,903...55,644,512 		JBrowse link
G Akap12 A-kinase anchoring protein 12 is_active_in ISO (PMID:23238728) RGD PMID:23238728 NCBI chr 1:40,730,123...40,819,863
Ensembl chr 1:40,730,123...40,819,886 		JBrowse link
G Anks1b ankyrin repeat and sterile alpha motif domain containing 1B is_active_in ISO (PMID:26085624) RGD PMID:26085624 NCBI chr 7:24,313,339...25,479,307
Ensembl chr 7:24,312,843...25,477,693 		JBrowse link
G Apba1 amyloid beta precursor protein binding family A member 1 located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:12547917), (PMID:17167098)		 Ensembl
RGD		 PMID:12547917 PMID:17167098 GO_REF:0000107 NCBI chr 1:221,363,769...221,569,496
Ensembl chr 1:221,363,778...221,566,553 		JBrowse link
G Apba2 amyloid beta precursor protein binding family A member 2 is_active_in ISO (PMID:17167098) RGD PMID:17167098 NCBI chr 1:118,053,270...118,286,858
Ensembl chr 1:118,103,219...118,285,699 		JBrowse link
G Apbb1 amyloid beta precursor protein binding family B member 1 is_active_in ISO
IDA		 (PMID:27734846)
PMID:16330549		 RGD PMID:27734846 PMID:16330549 RGD:2301201 NCBI chr 1:159,896,889...159,920,505
Ensembl chr 1:159,896,880...159,920,627 		JBrowse link
G Arhgdia Rho GDP dissociation inhibitor alpha is_active_in ISO (PMID:18829665) RGD PMID:18829665 NCBI chr10:105,854,526...105,858,020
Ensembl chr10:105,854,533...105,858,023 		JBrowse link
G Arpc2 actin related protein 2/3 complex, subunit 2 is_active_in IDA PMID:18509026 SynGO PMID:18509026 RGD:11530067 NCBI chr 9:75,820,782...75,851,471
Ensembl chr 9:75,820,770...75,851,471 		JBrowse link
G Atg5 autophagy related 5 is_active_in
located_in		 ISO
IEA		 (PMID:35115539)
GO_REF:0000107		 RGD
Ensembl		 PMID:35115539 GO_REF:0000107 NCBI chr20:47,798,217...47,889,216
Ensembl chr20:47,798,290...47,889,209 		JBrowse link
G Baiap2 BAR/IMD domain containing adaptor protein 2 is_active_in ISO (PMID:19193906) RGD PMID:19193906 NCBI chr10:105,223,065...105,290,130
Ensembl chr10:105,223,090...105,290,134 		JBrowse link
G Bcr BCR activator of RhoGEF and GTPase part_of
is_active_in		 ISS
ISO		 GO_REF:0000024
(PMID:20962234)		 UniProt
RGD		 PMID:20962234 GO_REF:0000024 NCBI chr20:13,469,325...13,596,942
Ensembl chr20:13,471,668...13,597,016 		JBrowse link
G Bsn bassoon (presynaptic cytomatrix protein) located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:26793095)		 Ensembl
RGD		 PMID:26793095 GO_REF:0000107 NCBI chr 8:108,784,849...108,875,819
Ensembl chr 8:108,788,542...108,875,819 		JBrowse link
G Cacna1b calcium voltage-gated channel subunit alpha1 B is_active_in EXP
IDA		 PMID:7832825 SynGO PMID:7832825 PMID:7832825 RGD:13792530, RGD:13792530 NCBI chr 3:7,380,892...7,546,104
Ensembl chr 3:7,380,922...7,546,091 		JBrowse link
G Cacng2 calcium voltage-gated channel auxiliary subunit gamma 2 is_active_in ISO (PMID:27076426) RGD PMID:27076426 NCBI chr 7:109,572,838...109,698,516
Ensembl chr 7:109,574,459...109,697,227 		JBrowse link
G Cacng3 calcium voltage-gated channel auxiliary subunit gamma 3 is_active_in ISO (PMID:27076426) RGD PMID:27076426 NCBI chr 1:177,201,361...177,297,019
Ensembl chr 1:177,201,288...177,297,024 		JBrowse link
G Cacng8 calcium voltage-gated channel auxiliary subunit gamma 8 is_active_in ISO (PMID:17074043), (PMID:27076426) RGD PMID:17074043 PMID:27076426 NCBI chr 1:65,755,334...65,775,567
Ensembl chr 1:65,755,334...65,779,089 		JBrowse link
G Cadm1 cell adhesion molecule 1 is_active_in ISO (PMID:21145003), (PMID:26687224) RGD PMID:21145003 PMID:26687224 NCBI chr 8:47,847,836...48,178,703
Ensembl chr 8:47,847,325...48,182,833 		JBrowse link
G Calm1 calmodulin 1 is_active_in IDA
NAS		 PMID:22848456 SynGO PMID:22848456 PMID:22848456 RGD:12050095, RGD:12050095 NCBI chr 6:119,487,691...119,495,759
Ensembl chr 6:119,487,621...119,498,227 		JBrowse link
G Calm2 calmodulin 2 is_active_in IDA
NAS		 PMID:22848456 SynGO PMID:22848456 PMID:22848456 RGD:12050095, RGD:12050095 NCBI chr 6:7,091,624...7,104,284
Ensembl chr 6:7,091,567...7,104,287
Ensembl chr15:7,091,567...7,104,287 		JBrowse link
G Calm3 calmodulin 3 is_active_in IDA
NAS		 PMID:22848456 SynGO PMID:22848456 PMID:22848456 RGD:12050095, RGD:12050095 NCBI chr 1:77,590,668...77,597,776
Ensembl chr 1:77,589,230...77,592,207 		JBrowse link
G Camk2a calcium/calmodulin-dependent protein kinase II alpha is_active_in ISO (PMID:17660813) RGD PMID:17660813 NCBI chr18:54,378,642...54,441,120
Ensembl chr18:54,378,784...54,438,994 		JBrowse link
G Capzb capping actin protein of muscle Z-line subunit beta located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:20545768)		 Ensembl
RGD		 PMID:20545768 GO_REF:0000107 NCBI chr 5:151,435,600...151,535,409
Ensembl chr 5:151,434,871...151,535,409 		JBrowse link
G Cask calcium/calmodulin dependent serine protein kinase located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:17287346)		 Ensembl
RGD		 PMID:17287346 GO_REF:0000107 NCBI chr  X:8,899,500...9,243,014
Ensembl chr  X:8,899,833...9,238,694 		JBrowse link
G Cdc42 cell division cycle 42 is_active_in IMP
IDA		 PMID:21423166 SynGO PMID:21423166 PMID:21423166 RGD:5688281, RGD:5688281 NCBI chr 5:149,555,069...149,593,239
Ensembl chr 5:149,553,724...149,593,111 		JBrowse link
G Cdh11 cadherin 11 is_active_in ISO (PMID:10860580) RGD PMID:10860580 NCBI chr19:2,148,447...2,305,754
Ensembl chr19:2,148,458...2,304,272 		JBrowse link
G Cdk5 cyclin-dependent kinase 5 is_active_in IDA
EXP
IMP		 PMID:17143272 SynGO PMID:17143272 PMID:17143272 PMID:17143272 RGD:8554385, RGD:8554385, RGD:8554385 NCBI chr 4:10,754,682...10,760,110
Ensembl chr 4:10,754,687...10,760,112 		JBrowse link
G Chrm1 cholinergic receptor, muscarinic 1 is_active_in ISO (PMID:26472558) RGD PMID:26472558 NCBI chr 1:205,567,226...205,583,001
Ensembl chr 1:205,567,220...205,582,356 		JBrowse link
G Cplx1 complexin 1 is_active_in ISO (PMID:22284181) RGD PMID:22284181 NCBI chr14:1,184,677...1,216,392 JBrowse link
G Ctnnb1 catenin beta 1 located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:14622577)		 Ensembl
RGD		 PMID:14622577 GO_REF:0000107 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Ctnnd1 catenin delta 1 is_active_in IDA PMID:12727444 SynGO PMID:12727444 RGD:2316208 NCBI chr 3:69,683,328...69,734,550
Ensembl chr 3:69,683,313...69,734,516 		JBrowse link
G Dcc DCC netrin 1 receptor located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:23291093)		 Ensembl
RGD		 PMID:23291093 GO_REF:0000107 NCBI chr18:64,868,987...65,972,783
Ensembl chr18:64,873,898...65,972,740 		JBrowse link
G Dgkb diacylglycerol kinase, beta located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:20657643)		 Ensembl
RGD		 PMID:20657643 GO_REF:0000107 NCBI chr 6:54,640,948...55,397,210
Ensembl chr 6:54,641,614...55,397,043 		JBrowse link
G Dgki diacylglycerol kinase, iota located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:21119615)		 Ensembl
RGD		 PMID:21119615 GO_REF:0000107 NCBI chr 4:65,410,878...65,872,733
Ensembl chr 4:65,420,108...65,872,733 		JBrowse link
G Dgkz diacylglycerol kinase zeta is_active_in ISO (PMID:19229292) RGD PMID:19229292 NCBI chr 3:77,904,149...77,946,114
Ensembl chr 3:77,904,150...77,946,099 		JBrowse link
G Dpysl2 dihydropyrimidinase-like 2 is_active_in ISO (PMID:27249678) RGD PMID:27249678 NCBI chr15:41,005,551...41,111,724
Ensembl chr15:41,005,551...41,111,829 		JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 is_active_in ISO (PMID:16980328), (PMID:18504299) RGD PMID:16980328 PMID:18504299 NCBI chr17:19,685,218...19,776,668
Ensembl chr17:19,685,215...19,776,661 		JBrowse link
G Dvl1 dishevelled segment polarity protein 1 is_active_in ISO (PMID:26400647) RGD PMID:26400647 NCBI chr 5:166,456,989...166,468,733
Ensembl chr 5:166,456,686...166,468,664 		JBrowse link
G Eea1 early endosome antigen 1 is_active_in ISO (PMID:17113235) RGD PMID:17113235 NCBI chr 7:30,554,686...30,722,186
Ensembl chr 7:30,554,552...30,718,487 		JBrowse link
G Efnb2 ephrin B2 is_active_in ISO (PMID:11754836) RGD PMID:11754836 NCBI chr16:80,783,389...80,827,420
Ensembl chr16:80,783,417...80,824,391 		JBrowse link
G Epha4 Eph receptor A4 is_active_in ISO (PMID:18410519) RGD PMID:18410519 NCBI chr 9:78,815,460...78,958,139
Ensembl chr 9:78,815,460...78,958,139 		JBrowse link
G Epha7 Eph receptor A7 is_active_in IDA PMID:26780036 SynGO PMID:26780036 RGD:13702137 NCBI chr 5:42,975,353...43,128,703
Ensembl chr 5:42,975,405...43,127,112 		JBrowse link
G Epn1 Epsin 1 is_active_in IDA PMID:16320245 SynGO PMID:16320245 RGD:11567253 NCBI chr 1:68,742,491...68,760,570
Ensembl chr 1:68,742,789...68,758,874 		JBrowse link
G Exoc4 exocyst complex component 4 is_active_in IDA PMID:12738960 SynGO PMID:12738960 RGD:8554028 NCBI chr 4:61,807,706...62,584,316
Ensembl chr 4:61,807,761...62,585,723 		JBrowse link
G Fbxl20 F-box and leucine-rich repeat protein 20 located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:17803915)		 Ensembl
RGD		 PMID:17803915 GO_REF:0000107 NCBI chr10:83,080,568...83,143,680
Ensembl chr10:83,086,551...83,144,162 		JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 is_active_in IDA
ISO		 PMID:9144248
(PMID:12032354)		 RGD PMID:12032354 PMID:9144248 RGD:11059594 NCBI chr  X:147,240,239...147,278,057
Ensembl chr  X:147,240,301...147,278,050 		JBrowse link
G Fyn FYN proto-oncogene, Src family tyrosine kinase located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:1361685)		 Ensembl
RGD		 PMID:1361685 GO_REF:0000107 NCBI chr20:42,767,733...42,960,903
Ensembl chr20:42,766,369...42,959,911 		JBrowse link
G Gabbr1 gamma-aminobutyric acid type B receptor subunit 1 is_active_in ISO (PMID:11498050) RGD PMID:11498050 NCBI chr20:1,464,534...1,494,114
Ensembl chr20:1,464,534...1,493,994 		JBrowse link
G Gabrb1 gamma-aminobutyric acid type A receptor subunit beta1 is_active_in ISO (PMID:11498050) RGD PMID:11498050 NCBI chr14:36,068,725...36,548,946
Ensembl chr14:36,080,393...36,548,948 		JBrowse link
G Ghrl ghrelin and obestatin prepropeptide is_active_in IDA
IMP		 PMID:26153524 SynGO PMID:26153524 PMID:26153524 RGD:13702301, RGD:13702301 NCBI chr 4:146,865,712...146,869,621
Ensembl chr 4:146,865,712...146,869,621 		JBrowse link
G Ghsr growth hormone secretagogue receptor is_active_in IDA
EXP		 PMID:26153524 SynGO PMID:26153524 PMID:26153524 RGD:13702301, RGD:13702301 NCBI chr 2:110,268,489...110,271,865
Ensembl chr 2:110,268,489...110,271,865 		JBrowse link
G Gipc1 GIPC PDZ domain containing family, member 1 is_active_in
located_in		 IDA
IEA
ISO		 PMID:16819522
GO_REF:0000107
(PMID:16819522)		 Ensembl
RGD		 PMID:16819522 PMID:16819522 GO_REF:0000107, RGD:155230717 NCBI chr19:24,474,291...24,487,083
Ensembl chr19:24,453,123...24,486,997 		JBrowse link
G Gng7 G protein subunit gamma 7 is_active_in IDA PMID:12837624 SynGO PMID:12837624 RGD:405650368 NCBI chr 7:8,697,458...8,761,239
Ensembl chr 7:8,697,521...8,761,240 		JBrowse link
G Gria2 glutamate ionotropic receptor AMPA type subunit 2 is_active_in IDA
IMP
ISO		 PMID:28057533
PMID:11348590
(PMID:29230056)		 RGD PMID:29230056 PMID:28057533 PMID:11348590 PMID:11348590 RGD:13702386, RGD:8553683, RGD:8553683 NCBI chr 2:165,949,379...166,069,510
Ensembl chr 2:165,947,521...166,069,510 		JBrowse link
G Gripap1 GRIP1 associated protein 1 is_active_in ISO (PMID:28285821) RGD PMID:28285821 NCBI chr  X:14,678,896...14,708,747
Ensembl chr  X:14,678,898...14,708,679 		JBrowse link
G Grm1 glutamate metabotropic receptor 1 located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:11487615)		 Ensembl
RGD		 PMID:11487615 GO_REF:0000107 NCBI chr 1:5,058,285...5,453,170
Ensembl chr 1:5,058,292...5,453,170 		JBrowse link
G Grm5 glutamate metabotropic receptor 5 located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:11431513)		 Ensembl
RGD		 PMID:11431513 GO_REF:0000107 NCBI chr 1:141,310,069...141,884,980
Ensembl chr 1:141,312,368...141,882,274 		JBrowse link
G Gsg1l GSG1-like is_active_in ISO (PMID:26932439) RGD PMID:26932439 NCBI chr 1:180,440,398...180,654,342
Ensembl chr 1:180,442,630...180,654,134 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta is_active_in IMP
IDA		 PMID:23864697 SynGO PMID:23864697 PMID:23864697 RGD:13702314, RGD:13702314 NCBI chr11:62,498,997...62,648,665
Ensembl chr11:62,504,316...62,648,646 		JBrowse link
G Hip1 huntingtin interacting protein 1 is_active_in ISO (PMID:17928447) RGD PMID:17928447 NCBI chr12:21,133,364...21,267,796
Ensembl chr12:21,133,406...21,267,725 		JBrowse link
G Ina internexin neuronal intermediate filament protein, alpha located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:25869803)		 Ensembl
RGD		 PMID:25869803 GO_REF:0000107 NCBI chr 1:245,896,775...245,908,330
Ensembl chr 1:245,896,775...245,908,330 		JBrowse link
G Iqsec1 IQ motif and Sec7 domain ArfGEF 1 is_active_in ISO (PMID:20547133) RGD PMID:20547133 NCBI chr 4:123,168,719...123,488,300
Ensembl chr 4:123,168,719...123,488,172 		JBrowse link
G Iqsec2 IQ motif and Sec7 domain ArfGEF 2 is_active_in ISO (PMID:27009485) RGD PMID:27009485 NCBI chr  X:21,254,799...21,337,179
Ensembl chr  X:21,254,914...21,336,584 		JBrowse link
G Itgb1 integrin subunit beta 1 located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:17065460)		 Ensembl
RGD		 PMID:17065460 GO_REF:0000107 NCBI chr19:56,705,123...56,753,199
Ensembl chr19:56,705,171...56,753,195 		JBrowse link
G Itpr1 inositol 1,4,5-trisphosphate receptor, type 1 located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:11117745)		 Ensembl
RGD		 PMID:11117745 GO_REF:0000107 NCBI chr 4:141,187,377...141,554,240
Ensembl chr 4:141,187,418...141,510,491 		JBrowse link
G Kcnk2 potassium two pore domain channel subfamily K member 2 is_active_in ISO (PMID:31728930) RGD PMID:31728930 NCBI chr13:100,766,101...100,963,435
Ensembl chr13:100,766,113...100,963,435 		JBrowse link
G L1cam L1 cell adhesion molecule is_active_in EXP
IDA
ISO		 PMID:7997264
(PMID:16537644)		 RGD PMID:16537644 PMID:7997264 PMID:7997264 RGD:13702438, RGD:13702438 NCBI chr  X:151,597,270...151,623,776
Ensembl chr  X:151,597,277...151,623,857 		JBrowse link
G Lrfn2 leucine rich repeat and fibronectin type III domain containing 2 located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:28604739)		 Ensembl
RGD		 PMID:28604739 GO_REF:0000107 NCBI chr 9:11,897,425...12,066,177
Ensembl chr 9:11,897,468...11,939,931 		JBrowse link
G Lrp8 LDL receptor related protein 8 is_active_in ISO (PMID:16102539) RGD PMID:16102539 NCBI chr 5:122,563,468...122,635,434
Ensembl chr 5:122,563,453...122,631,352 		JBrowse link
G Lrrc4 leucine rich repeat containing 4 is_active_in ISO (PMID:25411505) RGD PMID:25411505 NCBI chr 4:57,433,518...57,437,114
Ensembl chr 4:57,433,428...57,437,911 		JBrowse link
G Lrrc4c leucine rich repeat containing 4C is_active_in ISO (PMID:25411505) RGD PMID:25411505 NCBI chr 3:82,305,495...83,684,039
Ensembl chr 3:83,483,851...83,687,774 		JBrowse link
G Lrrtm2 leucine rich repeat transmembrane neuronal 2 is_active_in IMP
IDA
IEP		 PMID:19285470 SynGO PMID:19285470 PMID:19285470 PMID:19285470 RGD:8554788, RGD:8554788, RGD:8554788 NCBI chr18:26,817,816...26,822,864
Ensembl chr18:26,817,816...26,822,864 		JBrowse link
G Mapk8 mitogen-activated protein kinase 8 is_active_in ISO (PMID:17284179) RGD PMID:17284179 NCBI chr16:8,638,897...8,721,960
Ensembl chr16:8,638,924...8,721,981 		JBrowse link
G Mapk9 mitogen-activated protein kinase 9 located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:15816869)		 Ensembl
RGD		 PMID:15816869 GO_REF:0000107 NCBI chr10:34,169,661...34,211,138
Ensembl chr10:34,169,675...34,210,178 		JBrowse link
G Mmp9 matrix metallopeptidase 9 is_active_in EXP
IDA		 PMID:19047646 SynGO PMID:19047646 PMID:19047646 RGD:405650393, RGD:405650393 NCBI chr 3:153,684,158...153,692,118
Ensembl chr 3:153,683,858...153,692,120 		JBrowse link
G Mpp2 MAGUK p55 scaffold protein 2 located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:26880549)		 Ensembl
RGD		 PMID:26880549 GO_REF:0000107 NCBI chr10:87,011,434...87,043,883
Ensembl chr10:87,011,434...87,043,896 		JBrowse link
G Myo5a myosin VA is_active_in IDA
IMP		 PMID:18311135 SynGO PMID:18311135 PMID:18311135 RGD:13702420, RGD:13702420 NCBI chr 8:75,811,985...75,980,049
Ensembl chr 8:75,812,412...75,975,918 		JBrowse link
G Myo5b myosin Vb is_active_in IMP
IDA
ISO		 PMID:18984164
(PMID:18984164)		 RGD PMID:18984164 PMID:18984164 PMID:18984164 RGD:11533643, RGD:11533643 NCBI chr18:68,038,759...68,341,568
Ensembl chr18:68,038,759...68,338,745 		JBrowse link
G Myo6 myosin VI is_active_in ISO (PMID:16819522) RGD PMID:16819522 NCBI chr 8:81,087,157...81,242,022
Ensembl chr 8:81,087,139...81,239,292 		JBrowse link
G Myo9a myosin IXA is_active_in ISO (PMID:26834556) RGD PMID:26834556 NCBI chr 8:60,149,234...60,352,330
Ensembl chr 8:60,149,234...60,350,514 		JBrowse link
G Ncam1 neural cell adhesion molecule 1 is_active_in IMP
IDA		 PMID:7997264 SynGO PMID:7997264 PMID:7997264 RGD:13702438, RGD:13702438 NCBI chr 8:49,865,629...50,165,687
Ensembl chr 8:49,865,633...50,166,014 		JBrowse link
G Nefh neurofilament heavy chain is_active_in ISO (PMID:25869803) RGD PMID:25869803 NCBI chr14:79,830,362...79,840,347
Ensembl chr14:79,830,362...79,840,351 		JBrowse link
G Nefl neurofilament light chain is_active_in ISO (PMID:25869803) RGD PMID:25869803 NCBI chr15:42,301,920...42,305,793
Ensembl chr15:42,301,916...42,305,793 		JBrowse link
G Neto1 neuropilin and tolloid like 1 is_active_in ISO (PMID:28680963) RGD PMID:28680963 NCBI chr18:79,635,633...79,753,913
Ensembl chr18:79,635,633...79,749,030 		JBrowse link
G Notch1 notch receptor 1 is_active_in ISO (PMID:21315255), (PMID:26635527) RGD PMID:21315255 PMID:26635527 NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
G Nptn neuroplastin is_active_in IDA
EXP		 PMID:10759566 SynGO PMID:10759566 PMID:10759566 RGD:8553916, RGD:8553916 NCBI chr 8:58,996,873...59,063,402
Ensembl chr 8:58,996,887...59,063,401 		JBrowse link
G Nrxn1 neurexin 1 located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:19036990), (PMID:19822762)		 Ensembl
RGD		 PMID:19036990 PMID:19822762 GO_REF:0000107 NCBI chr 6:3,177,788...4,323,848
Ensembl chr 6:3,177,897...4,322,710 		JBrowse link
G Ntng1 netrin G1 is_active_in ISO (PMID:25411505) RGD PMID:25411505 NCBI chr 2:197,462,785...197,827,681
Ensembl chr 2:197,463,945...197,826,997 		JBrowse link
G Ntng2 netrin G2 is_active_in ISO (PMID:25411505) RGD PMID:25411505 NCBI chr 3:12,492,574...12,551,104
Ensembl chr 3:12,492,639...12,545,890 		JBrowse link
G P2rx2 purinergic receptor P2X 2 is_active_in IDA PMID:16330549 SynGO PMID:16330549 RGD:2301201 NCBI chr12:46,338,979...46,342,891
Ensembl chr12:46,339,549...46,342,891 		JBrowse link
G P2rx3 purinergic receptor P2X 3 located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:17074061)		 Ensembl
RGD		 PMID:17074061 GO_REF:0000107 NCBI chr 3:70,080,850...70,124,664
Ensembl chr 3:70,080,851...70,125,178 		JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 is_active_in ISO (PMID:29150182) RGD PMID:29150182 NCBI chr10:59,533,042...59,591,808
Ensembl chr10:59,534,117...59,591,808 		JBrowse link
G Pcdh8 protocadherin 8 is_active_in EXP
IDA		 PMID:10383464 SynGO PMID:10383464 PMID:10383464 RGD:68758, RGD:68758 NCBI chr15:55,198,470...55,203,039
Ensembl chr15:55,198,459...55,205,872 		JBrowse link
G Pde4a phosphodiesterase 4A is_active_in IMP
IDA		 PMID:27559174 SynGO PMID:27559174 PMID:27559174 RGD:13702343, RGD:13702343 NCBI chr 8:19,690,816...19,753,538
Ensembl chr 8:19,703,290...19,751,961 		JBrowse link
G Pfn1 profilin 1 is_active_in IDA PMID:15654839 SynGO PMID:15654839 RGD:13702446 NCBI chr10:55,365,263...55,367,968
Ensembl chr10:55,365,262...55,527,631 		JBrowse link
G Pfn2 profilin 2 located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:17541406)		 Ensembl
RGD		 PMID:17541406 GO_REF:0000107 NCBI chr 2:142,067,102...142,072,938
Ensembl chr 2:142,067,104...142,072,938 		JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein is_active_in IDA PMID:15558718 SynGO PMID:15558718 RGD:1600759 NCBI chr 1:144,056,415...144,138,045
Ensembl chr 1:144,056,721...144,137,557 		JBrowse link
G Plat plasminogen activator, tissue type located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:15486301)		 Ensembl
RGD		 PMID:15486301 GO_REF:0000107 NCBI chr16:69,240,582...69,265,177
Ensembl chr16:69,240,585...69,268,223 		JBrowse link
G Plcg1 phospholipase C, gamma 1 located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:28138157)		 Ensembl
RGD		 PMID:28138157 GO_REF:0000107 NCBI chr 3:149,385,587...149,416,330
Ensembl chr 3:149,385,587...149,416,330 		JBrowse link
G Plg plasminogen located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:15486301)		 Ensembl
RGD		 PMID:15486301 GO_REF:0000107 NCBI chr 1:48,325,186...48,367,643
Ensembl chr 1:48,325,185...48,367,786 		JBrowse link
G Plppr4 phospholipid phosphatase related 4 is_active_in
located_in		 ISO
IEA		 (PMID:27453502)
GO_REF:0000107		 RGD
Ensembl		 PMID:27453502 GO_REF:0000107 NCBI chr 2:205,371,317...205,412,302
Ensembl chr 2:205,371,322...205,412,302 		JBrowse link
G Ppfia1 PTPRF interacting protein alpha 1 is_active_in IMP
IDA		 PMID:11931740
PMID:17419996		 SynGO PMID:11931740 PMID:17419996 PMID:11931740 RGD:619588, RGD:14696670, RGD:619588 NCBI chr 1:199,641,277...199,718,371
Ensembl chr 1:199,641,277...199,717,277 		JBrowse link
G Ppp3ca protein phosphatase 3 catalytic subunit alpha is_active_in ISO (PMID:11257222) RGD PMID:11257222 NCBI chr 2:225,165,981...225,440,978
Ensembl chr 2:225,165,766...225,438,974 		JBrowse link
G Ppp3r1 protein phosphatase 3, regulatory subunit B, alpha is_active_in ISO (PMID:11733061) RGD PMID:11733061 NCBI chr14:91,556,743...91,606,391
Ensembl chr14:91,604,121...91,606,907 		JBrowse link
G Prkar1b protein kinase cAMP-dependent type I regulatory subunit beta is_active_in ISO (PMID:7568030), (PMID:9054501) RGD PMID:7568030 PMID:9054501 NCBI chr12:15,492,233...15,624,942
Ensembl chr12:15,511,801...15,624,942 		JBrowse link
G Prkci protein kinase C, iota is_active_in IMP
EXP
IDA
IEP		 PMID:23511975 SynGO PMID:23511975 PMID:23511975 PMID:23511975 PMID:23511975 RGD:13702261, RGD:13702261, RGD:13702261, RGD:13702261 NCBI chr 2:112,321,919...112,382,305
Ensembl chr 2:112,321,929...112,382,352 		JBrowse link
G Prkcz protein kinase C, zeta is_active_in IDA
IMP		 PMID:18667614 SynGO PMID:18667614 PMID:18667614 RGD:13702194, RGD:13702194 NCBI chr 5:165,817,786...165,930,386
Ensembl chr 5:165,819,466...165,930,367 		JBrowse link
G Prss12 serine protease 12 is_active_in ISO (PMID:18230682) RGD PMID:18230682 NCBI chr 2:211,624,134...211,684,126
Ensembl chr 2:211,624,134...211,684,126 		JBrowse link
G Ptk2b protein tyrosine kinase 2 beta is_active_in IMP
IDA		 PMID:20071509 SynGO PMID:20071509 PMID:20071509 RGD:155230731, RGD:155230731 NCBI chr15:40,360,722...40,481,235
Ensembl chr15:40,360,723...40,481,282 		JBrowse link
G Ptn pleiotrophin located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:12093164)		 Ensembl
RGD		 PMID:12093164 GO_REF:0000107 NCBI chr 4:65,293,731...65,375,572
Ensembl chr 4:65,293,734...65,375,456 		JBrowse link
G Ptpra protein tyrosine phosphatase, receptor type, A located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:12912911)		 Ensembl
RGD		 PMID:12912911 GO_REF:0000107 NCBI chr 3:117,650,146...117,759,744
Ensembl chr 3:117,650,183...117,759,728 		JBrowse link
G Ptprd protein tyrosine phosphatase, receptor type, D is_active_in ISO (PMID:10856223) RGD PMID:10856223 NCBI chr 5:90,046,993...90,698,977
NCBI chr 5:91,122,354...91,641,754
Ensembl chr 5:90,048,966...92,369,396 		JBrowse link
G Ptprs protein tyrosine phosphatase, receptor type, S located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:22519304), (PMID:32142410)		 Ensembl
RGD		 PMID:22519304 PMID:32142410 GO_REF:0000107 NCBI chr 9:1,245,408...1,307,015
Ensembl chr 9:1,245,410...1,306,947 		JBrowse link
G Rab11a RAB11a, member RAS oncogene family is_active_in IDA
IMP		 PMID:18045925 SynGO PMID:18045925 PMID:18045925 RGD:2306457, RGD:2306457 NCBI chr 8:65,223,698...65,246,461
Ensembl chr 8:65,222,949...65,246,525 		JBrowse link
G Rala RAS like proto-oncogene A is_active_in IDA
EXP
IMP		 PMID:19823667 SynGO PMID:19823667 PMID:19823667 PMID:19823667 RGD:2324918, RGD:2324918, RGD:2324918 NCBI chr17:47,092,163...47,145,192
Ensembl chr17:47,092,207...47,144,063 		JBrowse link
G Ralbp1 ralA binding protein 1 is_active_in IMP
EXP
IDA		 PMID:19823667 SynGO PMID:19823667 PMID:19823667 PMID:19823667 RGD:2324918, RGD:2324918, RGD:2324918 NCBI chr 9:105,456,425...105,493,235
Ensembl chr 9:105,456,425...105,492,707 		JBrowse link
G Rap2a RAP2A, member of RAS oncogene family is_active_in ISO (PMID:15953419) RGD PMID:15953419 NCBI chr15:97,596,848...97,597,338
Ensembl chr15:97,596,020...97,624,138 		JBrowse link
G Rgs19 regulator of G-protein signaling 19 is_active_in ISO (PMID:16819522) RGD PMID:16819522 NCBI chr 3:168,804,532...168,813,035
Ensembl chr 3:168,804,874...168,810,097 		JBrowse link
G Rhob ras homolog family member B is_active_in ISO (PMID:20203211) RGD PMID:20203211 NCBI chr 6:31,363,752...31,365,926
Ensembl chr 6:31,363,548...31,366,108 		JBrowse link
G Rnf216 ring finger protein 216 is_active_in IDA PMID:24945773 SynGO PMID:24945773 RGD:11553202 NCBI chr12:11,454,752...11,576,305
Ensembl chr12:11,454,797...11,576,304 		JBrowse link
G Rock1 Rho-associated coiled-coil containing protein kinase 1 located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:30826947)		 Ensembl
RGD		 PMID:30826947 GO_REF:0000107 NCBI chr18:1,114,532...1,236,345
Ensembl chr18:1,115,905...1,235,571 		JBrowse link
G Rock2 Rho-associated coiled-coil containing protein kinase 2 is_active_in ISO (PMID:18718479), (PMID:30826947) RGD PMID:18718479 PMID:30826947 NCBI chr 6:39,679,116...39,774,033
Ensembl chr 6:39,679,082...39,774,031 		JBrowse link
G Sh3gl1 SH3 domain containing GRB2 like 1, endophilin A2 is_active_in IDA PMID:11518713 SynGO PMID:11518713 RGD:13464360 NCBI chr 9:842,285...869,753
Ensembl chr 9:842,288...869,716 		JBrowse link
G Sh3gl2 SH3 domain containing GRB2 like 2, endophilin A1 is_active_in IDA PMID:11518713 SynGO PMID:11518713 RGD:13464360 NCBI chr 5:99,653,189...99,827,500
Ensembl chr 5:99,653,152...100,113,843 		JBrowse link
G Shank1 SH3 and multiple ankyrin repeat domains 1 is_active_in ISO (PMID:18272690) RGD PMID:18272690 NCBI chr 1:94,807,879...94,857,356
Ensembl chr 1:94,808,276...94,855,824 		JBrowse link
G Slc16a7 solute carrier family 16 member 7 is_active_in IDA PMID:15749979 SynGO PMID:15749979 RGD:13702297 NCBI chr 7:61,043,667...61,211,547
Ensembl chr 7:61,051,167...61,154,994 		JBrowse link
G Slc1a1 solute carrier family 1 member 1 is_active_in ISO (PMID:19923291) RGD PMID:19923291 NCBI chr 1:226,549,932...226,631,925
Ensembl chr 1:226,549,842...226,630,402 		JBrowse link
G Slc30a1 solute carrier family 30 member 1 is_active_in IDA
IEP		 PMID:24602382 SynGO PMID:24602382 PMID:24602382 RGD:13702407, RGD:13702407 NCBI chr13:103,491,037...103,494,910
Ensembl chr13:103,491,037...103,494,910 		JBrowse link
G Slc6a7 solute carrier family 6 member 7 is_active_in IDA
IEP		 PMID:9870934 SynGO PMID:9870934 PMID:9870934 RGD:13702417, RGD:13702417 NCBI chr18:54,448,464...54,467,319
Ensembl chr18:54,448,464...54,467,319 		JBrowse link
G Slc9a6 solute carrier family 9 member A6 is_active_in ISO (PMID:31175985) RGD PMID:31175985 NCBI chr  X:134,430,677...134,486,747
Ensembl chr  X:134,420,756...134,485,375 		JBrowse link
G Snap91 synaptosome associated protein 91 is_active_in IDA PMID:15558718 SynGO PMID:15558718 RGD:1600759 NCBI chr 8:87,738,056...87,852,690
Ensembl chr 8:87,738,824...87,852,367 		JBrowse link
G Snx27 sorting nexin 27 located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:23524343)		 Ensembl
RGD		 PMID:23524343 GO_REF:0000107 NCBI chr 2:182,135,904...182,218,906
Ensembl chr 2:182,135,905...182,218,906 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 is_active_in IDA
EXP
IMP		 PMID:22284190 SynGO PMID:22284190 PMID:22284190 PMID:22284190 RGD:13702421, RGD:13702421, RGD:13702421 NCBI chr10:85,811,206...85,863,057
Ensembl chr10:85,811,218...85,863,057 		JBrowse link
G Stx1a syntaxin 1A is_active_in IDA PMID:26903802 SynGO PMID:26903802 RGD:12050133 NCBI chr12:21,641,971...21,670,022
Ensembl chr12:21,641,969...21,669,930 		JBrowse link
G Stx3 syntaxin 3 located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:23395379)		 Ensembl
RGD		 PMID:23395379 GO_REF:0000107 NCBI chr 1:208,617,018...208,686,240
Ensembl chr 1:208,639,115...208,685,805 		JBrowse link
G Stx4 syntaxin 4 is_active_in IMP
IDA
ISO		 PMID:20434989
(PMID:29874582)		 RGD PMID:29874582 PMID:20434989 PMID:20434989 RGD:13702188, RGD:13702188 NCBI chr 1:182,451,108...182,459,701
Ensembl chr 1:182,451,117...182,459,979 		JBrowse link
G Stxbp5 syntaxin binding protein 5 is_active_in IDA
IEP		 PMID:9620695 SynGO PMID:9620695 PMID:9620695 RGD:1299498, RGD:1299498 NCBI chr 1:4,182,489...4,335,290
Ensembl chr 1:4,185,529...4,335,101 		JBrowse link
G Syn1 synapsin I is_active_in ISO (PMID:7902212) RGD PMID:7902212 NCBI chr  X:1,172,208...1,227,400
Ensembl chr  X:1,172,208...1,227,396 		JBrowse link
G Syn2 synapsin II located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:7777057)		 Ensembl
RGD		 PMID:7777057 GO_REF:0000107 NCBI chr 4:148,178,846...148,347,010
Ensembl chr 4:148,186,270...148,344,192 		JBrowse link
G Syngr1 synaptogyrin 1 is_active_in ISO (PMID:10595519) RGD PMID:10595519 NCBI chr 7:111,635,911...111,659,341
Ensembl chr 7:111,635,918...111,659,341 		JBrowse link
G Synj1 synaptojanin 1 is_active_in ISO (PMID:10535736) RGD PMID:10535736 NCBI chr11:30,192,629...30,269,447
Ensembl chr11:30,192,629...30,269,220 		JBrowse link
G Synpo synaptopodin is_active_in ISO (PMID:12928494) RGD PMID:12928494 NCBI chr18:54,048,299...54,106,388
Ensembl chr18:54,026,152...54,102,126 		JBrowse link
G Syp synaptophysin located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:10595519)		 Ensembl
RGD		 PMID:10595519 GO_REF:0000107 NCBI chr  X:14,849,444...14,864,553
Ensembl chr  X:14,849,444...14,864,745 		JBrowse link
G Syt11 synaptotagmin 11 is_active_in IDA PMID:22960622 SynGO PMID:22960622 RGD:11079184 NCBI chr 2:174,206,032...174,232,540
Ensembl chr 2:174,206,191...174,231,964 		JBrowse link
G Tnr tenascin R located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:11377840)		 Ensembl
RGD		 PMID:11377840 GO_REF:0000107 NCBI chr13:71,751,714...72,172,731
Ensembl chr13:72,091,585...72,167,641 		JBrowse link
G Trio trio Rho guanine nucleotide exchange factor is_active_in IMP
IDA		 PMID:26858404 SynGO PMID:26858404 PMID:26858404 RGD:155230791, RGD:155230791 NCBI chr 2:78,505,069...78,801,384
Ensembl chr 2:78,505,070...78,803,135 		JBrowse link
G Tubb2b tubulin, beta 2B class IIb is_active_in ISO (PMID:27594048) RGD PMID:27594048 NCBI chr17:30,747,734...30,750,781
Ensembl chr17:30,747,734...30,750,638 		JBrowse link
G Ube2i ubiquitin-conjugating enzyme E2I is_active_in ISO (PMID:25448527) RGD PMID:25448527 NCBI chr10:14,277,749...14,294,681
Ensembl chr10:69,701,618...69,702,443
Ensembl chr10:69,701,618...69,702,443 		JBrowse link
G Wnt5a Wnt family member 5A is_active_in
located_in		 IDA
EXP
IEA
ISO		 PMID:26311509
GO_REF:0000107
(PMID:28069946)		 Ensembl
RGD		 PMID:28069946 PMID:26311509 PMID:26311509 GO_REF:0000107, RGD:11353570, RGD:11353570 NCBI chr16:3,697,032...3,718,230
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Wnt7a Wnt family member 7A is_active_in ISO (PMID:26400647) RGD PMID:26400647 NCBI chr 4:123,863,108...123,908,981
Ensembl chr 4:123,863,108...123,908,981 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20829
    cellular anatomical structure 20629
      cell junction 2600
        synapse 1993
          Schaffer collateral - CA1 synapse 159
paths to the root