Rnf216 (ring finger protein 216) - Rat Genome Database

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Gene: Rnf216 (ring finger protein 216) Rattus norvegicus
Analyze
Symbol: Rnf216
Name: ring finger protein 216
RGD ID: 1565135
Description: Predicted to enable ubiquitin protein ligase activity. Involved in protein catabolic process, modulating synaptic transmission. Is active in Schaffer collateral - CA1 synapse; glutamatergic synapse; and postsynaptic endocytic zone. Human ortholog(s) of this gene implicated in Gordon Holmes syndrome. Orthologous to human RNF216 (ring finger protein 216); INTERACTS WITH acrylamide; bisphenol A; cyclophosphamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: E3 ubiquitin-protein ligase RNF216; LOC304294; RGD1565135; similar to E3 ubiquitin ligase TRIAD3B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21211,454,752 - 11,576,305 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1211,454,797 - 11,576,304 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1212,263,009 - 12,386,275 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01212,886,286 - 13,009,554 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01211,912,387 - 12,035,725 (+)NCBIRnor_WKY
Rnor_6.01213,508,429 - 13,631,689 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1213,508,429 - 13,632,304 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01215,547,724 - 15,668,304 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41211,850,549 - 11,968,127 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1213,249,412 - 13,370,214 (+)NCBICelera
Cytogenetic Map12p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Triad3A regulates synaptic strength by ubiquitination of Arc. Mabb AM, etal., Neuron. 2014 Jun 18;82(6):1299-316. doi: 10.1016/j.neuron.2014.05.016.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19893624   PMID:32918771  


Genomics

Comparative Map Data
Rnf216
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21211,454,752 - 11,576,305 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1211,454,797 - 11,576,304 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1212,263,009 - 12,386,275 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01212,886,286 - 13,009,554 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01211,912,387 - 12,035,725 (+)NCBIRnor_WKY
Rnor_6.01213,508,429 - 13,631,689 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1213,508,429 - 13,632,304 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01215,547,724 - 15,668,304 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41211,850,549 - 11,968,127 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1213,249,412 - 13,370,214 (+)NCBICelera
Cytogenetic Map12p11NCBI
RNF216
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3875,620,047 - 5,781,663 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl75,620,047 - 5,781,696 (-)EnsemblGRCh38hg38GRCh38
GRCh3775,659,678 - 5,821,294 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3675,626,204 - 5,787,818 (-)NCBINCBI36Build 36hg18NCBI36
Celera75,619,295 - 5,780,893 (-)NCBICelera
Cytogenetic Map7p22.1NCBI
HuRef75,571,731 - 5,733,450 (-)NCBIHuRef
CHM1_175,659,283 - 5,820,961 (-)NCBICHM1_1
T2T-CHM13v2.075,737,579 - 5,899,098 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v275,706,017 - 5,867,706 (-)NCBI
Rnf216
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395142,976,648 - 143,098,793 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5142,976,648 - 143,098,749 (-)EnsemblGRCm39 Ensembl
GRCm385142,990,893 - 143,113,041 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5142,990,893 - 143,112,994 (-)EnsemblGRCm38mm10GRCm38
MGSCv375143,752,572 - 143,874,673 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365143,256,033 - 143,378,134 (-)NCBIMGSCv36mm8
Celera5140,039,423 - 140,158,416 (-)NCBICelera
Cytogenetic Map5G2NCBI
Rnf216
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546010,425,885 - 10,551,295 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546010,423,736 - 10,578,421 (-)NCBIChiLan1.0ChiLan1.0
RNF216
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.175,891,909 - 6,051,979 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl75,891,909 - 6,051,979 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v075,872,118 - 6,037,073 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
RNF216
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1612,185,870 - 12,347,461 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl612,185,846 - 12,361,869 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha613,690,975 - 13,819,412 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0612,279,451 - 12,440,387 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl612,279,466 - 12,483,247 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1612,133,461 - 12,294,697 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0612,067,337 - 12,228,144 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0612,343,974 - 12,505,522 (+)NCBIUU_Cfam_GSD_1.0
Rnf216
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344140,441,068 - 140,601,298 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936765452,755 - 592,358 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF216
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl34,158,450 - 4,329,378 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.134,158,447 - 4,329,458 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.234,800,772 - 4,820,346 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RNF216
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12815,955,499 - 16,114,307 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2815,954,803 - 16,117,759 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660905,879,677 - 6,041,644 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf216
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474027,885,778 - 28,024,710 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474027,861,094 - 28,024,619 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
BE117877  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,504,190 - 11,504,383 (+)MAPPERmRatBN7.2
Rnor_6.01213,557,812 - 13,558,004NCBIRnor6.0
Rnor_5.01215,596,773 - 15,596,965UniSTSRnor5.0
RGSC_v3.41211,903,466 - 11,903,658UniSTSRGSC3.4
Celera1213,298,552 - 13,298,744UniSTS
RH 3.4 Map12154.3UniSTS
Cytogenetic Map12p11UniSTS
RH128286  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,575,887 - 11,576,068 (+)MAPPERmRatBN7.2
Rnor_6.01213,631,273 - 13,631,453NCBIRnor6.0
Rnor_5.01215,667,888 - 15,668,068UniSTSRnor5.0
Celera1213,369,798 - 13,369,978UniSTS
RH 3.4 Map12156.3UniSTS
Cytogenetic Map12p11UniSTS
RH137434  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,550,021 - 11,550,219 (+)MAPPERmRatBN7.2
Rnor_6.01213,605,249 - 13,605,446NCBIRnor6.0
Rnor_5.01215,641,864 - 15,642,061UniSTSRnor5.0
RGSC_v3.41211,949,352 - 11,949,549UniSTSRGSC3.4
Celera1213,343,917 - 13,344,114UniSTS
Cytogenetic Map12p11UniSTS
RH137509  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,470,103 - 11,470,644 (+)MAPPERmRatBN7.2
mRatBN7.21234,761,961 - 34,762,178 (+)MAPPERmRatBN7.2
Rnor_6.01240,274,101 - 40,274,317NCBIRnor6.0
Rnor_6.01213,523,743 - 13,524,283NCBIRnor6.0
Rnor_5.01242,145,058 - 42,145,274UniSTSRnor5.0
Rnor_5.01215,562,742 - 15,563,282UniSTSRnor5.0
RGSC_v3.41235,966,790 - 35,967,006UniSTSRGSC3.4
RGSC_v3.41211,865,825 - 11,866,365UniSTSRGSC3.4
Celera1213,264,657 - 13,265,197UniSTS
Celera1236,426,782 - 36,426,998UniSTS
RH 3.4 Map12616.2UniSTS
Cytogenetic Map12q16UniSTS
Cytogenetic Map12p11UniSTS
RH140401  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,459,101 - 11,459,318 (+)MAPPERmRatBN7.2
Rnor_6.01213,512,742 - 13,512,958NCBIRnor6.0
Rnor_5.01215,551,741 - 15,551,957UniSTSRnor5.0
RGSC_v3.41211,854,823 - 11,855,039UniSTSRGSC3.4
Celera1213,253,666 - 13,253,882UniSTS
RH 3.4 Map12154.5UniSTS
Cytogenetic Map12p11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1600391Edcs2Endometrial carcinoma susceptibility QTL23.50.01uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)12683319017870186Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12844949028302290Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12931821612829686Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)12931821632103380Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121107382524234895Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382528064557Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:287
Count of miRNA genes:169
Interacting mature miRNAs:205
Transcripts:ENSRNOT00000001458
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 27 27 14 19 14 74 31 41 11
Low 16 30 27 27 8 11 4 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000001458   ⟹   ENSRNOP00000001458
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1211,454,797 - 11,576,304 (+)Ensembl
Rnor_6.0 Ensembl1213,508,429 - 13,631,689 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000083976   ⟹   ENSRNOP00000074315
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1213,508,933 - 13,632,304 (+)Ensembl
RefSeq Acc Id: NM_001107122   ⟹   NP_001100592
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21211,454,797 - 11,576,304 (+)NCBI
Rnor_6.01213,508,429 - 13,631,689 (+)NCBI
Rnor_5.01215,547,724 - 15,668,304 (+)NCBI
RGSC_v3.41211,850,549 - 11,968,127 (+)RGD
Celera1213,249,412 - 13,370,214 (+)RGD
Sequence:
RefSeq Acc Id: XM_039089363   ⟹   XP_038945291
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21211,454,816 - 11,576,305 (+)NCBI
RefSeq Acc Id: XM_039089364   ⟹   XP_038945292
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21211,454,752 - 11,576,305 (+)NCBI
RefSeq Acc Id: XM_039089366   ⟹   XP_038945294
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21211,455,312 - 11,576,305 (+)NCBI
RefSeq Acc Id: XM_039089367   ⟹   XP_038945295
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21211,454,816 - 11,576,305 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001100592   ⟸   NM_001107122
- UniProtKB: D3ZU60 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000074315   ⟸   ENSRNOT00000083976
RefSeq Acc Id: ENSRNOP00000001458   ⟸   ENSRNOT00000001458
RefSeq Acc Id: XP_038945292   ⟸   XM_039089364
- Peptide Label: isoform X1
- UniProtKB: D3ZU60 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038945291   ⟸   XM_039089363
- Peptide Label: isoform X1
- UniProtKB: D3ZU60 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038945295   ⟸   XM_039089367
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038945294   ⟸   XM_039089366
- Peptide Label: isoform X1
- UniProtKB: D3ZU60 (UniProtKB/TrEMBL)
Protein Domains
RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZU60-F1-model_v2 AlphaFold D3ZU60 1-910 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698444
Promoter ID:EPDNEW_R8969
Type:initiation region
Name:Rnf216_1
Description:ring finger protein 216
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01213,508,432 - 13,508,492EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: mRatBN7.2

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
12 11556639 11556640 G T snv LEW/Crl (2019)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565135 AgrOrtholog
BioCyc Gene G2FUF-19988 BioCyc
Ensembl Genes ENSRNOG00000001101 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000001458 ENTREZGENE
  ENSRNOP00000001458.6 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000001458 ENTREZGENE
  ENSRNOT00000001458.8 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro TRIAD_supradom UniProtKB/TrEMBL
  Znf_C6HC UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report rno:304294 UniProtKB/TrEMBL
NCBI Gene 304294 ENTREZGENE
PhenoGen Rnf216 PhenoGen
PROSITE TRIAD UniProtKB/TrEMBL
SMART IBR UniProtKB/TrEMBL
UniProt D3ZU60 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Rnf216  ring finger protein 216  RGD1565135_predicted  similar to E3 ubiquitin ligase TRIAD3B (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1565135_predicted  similar to E3 ubiquitin ligase TRIAD3B (predicted)  LOC304294  similar to E3 ubiquitin ligase TRIAD3B  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC304294  similar to E3 ubiquitin ligase TRIAD3B      Symbol and Name status set to provisional 70820 PROVISIONAL