Cdh11 (cadherin 11) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Cdh11 (cadherin 11) Rattus norvegicus
Analyze
Symbol: Cdh11
Name: cadherin 11
RGD ID: 619742
Description: Predicted to enable beta-catenin binding activity and cadherin binding activity. Predicted to be involved in several processes, including aortic valve formation; calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules; and cell junction assembly. Predicted to act upstream of or within several processes, including chordate embryonic development; fibroblast migration; and luteinization. Predicted to be located in cytoplasm and plasma membrane. Predicted to be part of catenin complex. Predicted to be active in Schaffer collateral - CA1 synapse; adherens junction; and glutamatergic synapse. Human ortholog(s) of this gene implicated in Elsahy-Waters syndrome and Teebi hypertelorism syndrome 2. Orthologous to human CDH11 (cadherin 11); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cadherin-11
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8192,152,961 - 2,312,140 (+)NCBIGRCr8
mRatBN7.2192,148,447 - 2,305,754 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl192,148,458 - 2,304,272 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx192,138,285 - 2,294,837 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0192,905,067 - 3,061,627 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0192,180,332 - 2,336,874 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0192,391,181 - 2,551,245 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl192,393,059 - 2,551,245 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0192,372,260 - 2,531,571 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4192,225,209 - 2,382,805 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1192,380,123 - 2,380,442 (+)NCBI
Celera192,130,072 - 2,287,470 (+)NCBICelera
Cytogenetic Map19p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cdh11RatChromosome 16q12 Duplication Syndrome  ISOCDH11 (Homo sapiens)8554872ClinVar Annotator: match by term: Chromosome 16q12 duplication syndromeClinVarPMID:25741868
Cdh11RatElsahy-Waters syndrome  ISOCDH11 (Homo sapiens)8554872ClinVar Annotator: match by term: Elsahy-Waters syndromeClinVarPMID:25741868 more ...
Cdh11Ratgenetic disease  ISOCDH11 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:28492532
Cdh11RatMoebius syndrome  ISOCDH11 (Homo sapiens)8554872ClinVar Annotator: match by term: Oromandibular-limb hypogenesis spectrumClinVar 
Cdh11Ratorofacial cleft 1  ISOCDH11 (Homo sapiens)8554872ClinVar Annotator: match by term: Orofacial cleft 1ClinVarPMID:25741868
Cdh11RatTeebi hypertelorism syndrome 2  ISOCDH11 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:25741868 and PMID:33811546
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cdh11RatElsahy-Waters syndrome  ISOCDH11 (Homo sapiens)7240710 OMIM 
Cdh11RatTeebi hypertelorism syndrome 2  ISOCDH11 (Homo sapiens)7240710 OMIM 

1 to 20 of 138 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cdh11Rat(S)-nicotine multiple interactionsISOCdh11 (Mus musculus)6480464[Nicotine co-treated with 1-Methyl-4-phenyl-1 more ...CTDPMID:20230807
Cdh11Rat1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine multiple interactionsISOCdh11 (Mus musculus)6480464[Caffeine co-treated with 1-Methyl-4-phenyl-1 more ...CTDPMID:20230807
Cdh11Rat1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine decreases expressionISOCdh11 (Mus musculus)64804641-Methyl-4-phenyl-1 more ...CTDPMID:20230807
Cdh11Rat17alpha-ethynylestradiol decreases expressionEXP 6480464Ethinyl Estradiol results in decreased expression of CDH11 mRNACTDPMID:17351261
Cdh11Rat17beta-estradiol decreases expressionISOCDH11 (Homo sapiens)6480464Estradiol results in decreased expression of CDH11 mRNACTDPMID:19619570 and PMID:31614463
Cdh11Rat17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of CDH11 mRNACTDPMID:32145629
Cdh11Rat17beta-estradiol multiple interactionsISOCDH11 (Homo sapiens)6480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in decreased expression of CDH11 mRNA and [Estradiol co-treated with TGFB1 protein] results in increased expression of CDH11 mRNACTDPMID:19619570 and PMID:30165855
Cdh11Rat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISOCDH11 (Homo sapiens)64804642 more ...CTDPMID:19095052
Cdh11Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOCDH11 (Homo sapiens)6480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in decreased expression of CDH11 mRNACTDPMID:19619570
Cdh11Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of CDH11 mRNACTDPMID:33387578
Cdh11Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of CDH11 mRNACTDPMID:34747641
Cdh11Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOCdh11 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of CDH11 mRNACTDPMID:24035824
Cdh11Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOCdh11 (Mus musculus)6480464Tetrachlorodibenzodioxin promotes the reaction [AHR protein binds to CDH11 promoter]CTDPMID:19654925
Cdh11Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOCDH11 (Homo sapiens)6480464Tetrachlorodibenzodioxin results in decreased expression of CDH11 mRNACTDPMID:19619570 and PMID:19901195
Cdh11Rat2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expressionISOCdh11 (Mus musculus)64804642 more ...CTDPMID:38648751
Cdh11Rat3,3'-diindolylmethane decreases expressionISOCDH11 (Homo sapiens)64804643 and 3'-diindolylmethane results in decreased expression of CDH11 proteinCTDPMID:18025290
Cdh11Rat4,4'-sulfonyldiphenol increases expressionISOCdh11 (Mus musculus)6480464bisphenol S results in increased expression of CDH11 mRNACTDPMID:30951980
Cdh11Rat5-aza-2'-deoxycytidine decreases expressionISOCDH11 (Homo sapiens)6480464Decitabine results in decreased expression of CDH11 mRNA and Decitabine results in decreased expression of CDH11 proteinCTDPMID:18025290
Cdh11Ratacrylamide decreases expressionISOCDH11 (Homo sapiens)6480464Acrylamide results in decreased expression of CDH11 mRNACTDPMID:32763439
Cdh11Ratafimoxifene decreases expressionISOCDH11 (Homo sapiens)6480464afimoxifene results in decreased expression of CDH11 mRNACTDPMID:19901195

1 to 20 of 138 rows

Biological Process
1 to 20 of 31 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cdh11Ratadherens junction organization involved_inIBAPANTHER:PTN000616280 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cdh11Rataortic valve formation involved_inISOCDH11 (Sus scrofa)1624291UniProtKB:P61586 and PMID:26188246RGDPMID:26188246
Cdh11Ratcalcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules involved_inIBAMGI:1095414 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cdh11Ratcell adhesion involved_inIEAInterPro:IPR0208941600115GO_REF:0000002InterProGO_REF:0000002
Cdh11Ratcell adhesion involved_inIEAUniProtKB-KW:KW-01301600115GO_REF:0000043UniProtGO_REF:0000043
Cdh11Ratcell migration involved_inIBAMGI:2685011 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cdh11Ratcell migration involved_inISOCDH11 (Sus scrofa)1624291UniProtKB:P61586 and PMID:26188246RGDPMID:26188246
Cdh11Ratcell morphogenesis involved_inIBAMGI:105057 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cdh11Ratcell-cell adhesion  TAS 68759 RGD 
Cdh11Ratcell-cell adhesion involved_inIEAInterPro:IPR0398081600115GO_REF:0000002InterProGO_REF:0000002
Cdh11Ratcell-cell adhesion mediated by cadherin involved_inIBAMGI:88354 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cdh11Ratcell-cell junction assembly involved_inIBAMGI:88354 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cdh11Ratcell-substrate adhesion involved_inISOCDH11 (Homo sapiens)1624291 PMID:33811546RGDPMID:33811546
Cdh11Ratcell-substrate adhesion involved_inIEAUniProtKB:P55287 and ensembl:ENSP000002686031600115GO_REF:0000107EnsemblGO_REF:0000107
Cdh11Ratcorticospinal tract morphogenesis acts_upstream_of_or_withinISOCdh11 (Mus musculus)1624291MGI:1930001 PMID:22284184RGDPMID:22284184
Cdh11Ratcorticospinal tract morphogenesis acts_upstream_of_or_withinIEAUniProtKB:P55288 and ensembl:ENSMUSP000000746811600115GO_REF:0000107EnsemblGO_REF:0000107
Cdh11Ratembryonic cranial skeleton morphogenesis acts_upstream_of_or_withinISOCdh11 (Mus musculus)1624291MGI:3526861 PMID:17143286RGDPMID:17143286
Cdh11Ratestrogen metabolic process acts_upstream_of_or_withinISOCdh11 (Mus musculus)1624291MGI:97530 PMID:19056881RGDPMID:19056881
Cdh11Ratfemale gonad development acts_upstream_of_or_withinISOCdh11 (Mus musculus)1624291MGI:97530 PMID:19056881RGDPMID:19056881
Cdh11Ratfibroblast migration acts_upstream_of_or_withinISOCdh11 (Mus musculus)1624291MGI:3526861 PMID:17143286RGDPMID:17143286
1 to 20 of 31 rows

Cellular Component
1 to 17 of 17 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cdh11Ratadherens junction is_active_inIBAMGI:105057 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cdh11Ratcatenin complex part_ofIBAMGI:88354 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cdh11Ratcytoplasm located_inISOCdh11 (Mus musculus)1624291 PMID:12139922RGDPMID:12139922
Cdh11Ratcytoplasm located_inIEAUniProtKB:P55288 and ensembl:ENSMUSP000000746811600115GO_REF:0000107EnsemblGO_REF:0000107
Cdh11Ratglutamatergic synapse is_active_inIEAUniProtKB:P55288 and ensembl:ENSMUSP000000746811600115GO_REF:0000107EnsemblGO_REF:0000107
Cdh11Ratglutamatergic synapse is_active_inISOCdh11 (Mus musculus)1624291 PMID:10860580RGDPMID:10860580
Cdh11Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Cdh11Ratmembrane located_inIEAInterPro:IPR002126 and InterPro:IPR0159191600115GO_REF:0000002InterProGO_REF:0000002
Cdh11Ratplasma membrane located_inISOCdh11 (Mus musculus)1624291 PMID:12139922RGDPMID:12139922
Cdh11Ratplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
Cdh11Ratplasma membrane located_inIEAUniProtKB:P55288 and ensembl:ENSMUSP000000746811600115GO_REF:0000107EnsemblGO_REF:0000107
Cdh11Ratplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
Cdh11Ratplasma membrane located_inIEAInterPro:IPR0208941600115GO_REF:0000002InterProGO_REF:0000002
Cdh11RatSchaffer collateral - CA1 synapse is_active_inISOCdh11 (Mus musculus)1624291 PMID:10860580RGDPMID:10860580
Cdh11RatSchaffer collateral - CA1 synapse is_active_inIEAUniProtKB:P55288 and ensembl:ENSMUSP000000746811600115GO_REF:0000107EnsemblGO_REF:0000107
Cdh11Ratsynapse is_active_inISOCdh11 (Mus musculus)1624291 PMID:10860580RGDPMID:10860580
Cdh11Ratsynapse is_active_inIEAUniProtKB:P55288 and ensembl:ENSMUSP000000746811600115GO_REF:0000107EnsemblGO_REF:0000107
1 to 17 of 17 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cdh11Ratbeta-catenin binding enablesIBAMGI:88354 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cdh11Ratcadherin binding enablesIBAMGI:107433 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cdh11Ratcalcium ion binding enablesIEAUniRule:UR0004134501600115GO_REF:0000104UniProtGO_REF:0000104
Cdh11Ratcalcium ion binding enablesIEAInterPro:IPR000233 more ...1600115GO_REF:0000002InterProGO_REF:0000002


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Multiple cadherin superfamily members with unique expression profiles are produced in rat testis. Johnson KJ, etal., Endocrinology 2000 Feb;141(2):675-83.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:10860580   PMID:12139922   PMID:21250828   PMID:22284184   PMID:23376485   PMID:23533145   PMID:23916685   PMID:24139451   PMID:25681337  



Cdh11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8192,152,961 - 2,312,140 (+)NCBIGRCr8
mRatBN7.2192,148,447 - 2,305,754 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl192,148,458 - 2,304,272 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx192,138,285 - 2,294,837 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0192,905,067 - 3,061,627 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0192,180,332 - 2,336,874 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0192,391,181 - 2,551,245 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl192,393,059 - 2,551,245 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0192,372,260 - 2,531,571 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4192,225,209 - 2,382,805 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1192,380,123 - 2,380,442 (+)NCBI
Celera192,130,072 - 2,287,470 (+)NCBICelera
Cytogenetic Map19p14NCBI
CDH11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381664,943,753 - 65,123,744 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1664,943,753 - 65,126,112 (-)EnsemblGRCh38hg38GRCh38
GRCh371664,977,656 - 65,155,966 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361663,538,184 - 63,713,420 (-)NCBINCBI36Build 36hg18NCBI36
Build 341663,538,185 - 63,713,420NCBI
Celera1649,484,273 - 49,659,540 (-)NCBICelera
Cytogenetic Map16q21NCBI
HuRef1650,850,425 - 51,025,603 (-)NCBIHuRef
CHM1_11666,388,690 - 66,563,938 (-)NCBICHM1_1
T2T-CHM13v2.01670,732,330 - 70,912,379 (-)NCBIT2T-CHM13v2.0
Cdh11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398103,358,727 - 103,512,125 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8103,358,727 - 103,512,274 (-)EnsemblGRCm39 Ensembl
GRCm388102,632,095 - 102,785,493 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8102,632,095 - 102,785,642 (-)EnsemblGRCm38mm10GRCm38
MGSCv378105,156,895 - 105,309,011 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368105,522,124 - 105,674,205 (-)NCBIMGSCv36mm8
Celera8106,868,993 - 107,021,043 (-)NCBICelera
Cytogenetic Map8D1NCBI
cM Map850.44NCBI
Cdh11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543321,612,297 - 21,687,281 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543321,613,909 - 21,770,968 (-)NCBIChiLan1.0ChiLan1.0
CDH11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21874,445,794 - 74,623,499 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11680,357,007 - 80,533,939 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01645,261,269 - 45,436,597 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11664,367,862 - 64,543,189 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1664,367,862 - 64,475,028 (-)Ensemblpanpan1.1panPan2
CDH11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1583,977,267 - 84,122,712 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl584,038,317 - 84,122,110 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha584,033,015 - 84,079,562 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0584,409,502 - 84,557,344 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl584,411,628 - 84,557,341 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1584,232,531 - 84,381,087 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0583,924,826 - 84,072,777 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0584,557,786 - 84,705,744 (+)NCBIUU_Cfam_GSD_1.0
Cdh11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934943,926,784 - 44,075,712 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647515,511,804 - 15,662,330 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647515,513,402 - 15,662,330 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDH11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl625,783,597 - 25,933,634 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1625,782,746 - 25,933,753 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2623,708,343 - 23,798,843 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CDH11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1550,652,628 - 50,825,640 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl550,649,627 - 50,775,440 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604725,098,253 - 25,288,448 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdh11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474621,345,310 - 21,503,822 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474621,345,304 - 21,501,542 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Cdh11
919 total Variants


Assembly: Rnor_5.0
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
19 2526463 2526464 A G snv RCS/Kyo (KyushuU) View more Information

Predicted Target Of
Summary Value
Count of predictions:391
Count of miRNA genes:216
Interacting mature miRNAs:275
Transcripts:ENSRNOT00000018535
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 13 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19128982497Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127355345Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124688055Rat
631678Cm9Cardiac mass QTL 94.270.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)19128982497Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat

1 to 10 of 13 rows
D19Rat34  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8192,194,317 - 2,194,573 (+)Marker Load Pipeline
mRatBN7.2192,187,927 - 2,188,183 (+)MAPPERmRatBN7.2
Rnor_6.0192,432,963 - 2,433,218NCBIRnor6.0
Rnor_5.0192,413,720 - 2,413,975UniSTSRnor5.0
RGSC_v3.4192,264,957 - 2,265,367RGDRGSC3.4
RGSC_v3.4192,265,038 - 2,265,293UniSTSRGSC3.4
RGSC_v3.1192,265,038 - 2,265,293RGD
Celera192,169,444 - 2,169,700UniSTS
RH 3.4 Map190.0RGD
RH 3.4 Map190.0UniSTS
RH 2.0 Map190.0RGD
SHRSP x BN Map190.0RGD
FHH x ACI Map190.0RGD
Cytogenetic Map19p14UniSTS
D19Got100  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0192,417,602 - 2,418,305NCBIRnor6.0
Rnor_5.0192,398,359 - 2,399,062UniSTSRnor5.0
RGSC_v3.4192,249,755 - 2,250,380UniSTSRGSC3.4
Cytogenetic Map19p14UniSTS
BE115484  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2192,292,399 - 2,292,552 (+)MAPPERmRatBN7.2
Rnor_6.0192,537,889 - 2,538,041NCBIRnor6.0
Rnor_5.0192,518,215 - 2,518,367UniSTSRnor5.0
RGSC_v3.4192,369,450 - 2,369,602UniSTSRGSC3.4
Celera192,274,117 - 2,274,269UniSTS
RH 3.4 Map190.0UniSTS
Cytogenetic Map19p14UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000018535   ⟹   ENSRNOP00000018535
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl192,148,458 - 2,304,272 (+)Ensembl
Rnor_6.0 Ensembl192,393,059 - 2,551,245 (+)Ensembl
RefSeq Acc Id: NM_053392   ⟹   NP_445844
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8192,154,840 - 2,312,140 (+)NCBI
mRatBN7.2192,148,447 - 2,305,754 (+)NCBI
Rnor_6.0192,393,059 - 2,551,245 (+)NCBI
Rnor_5.0192,372,260 - 2,531,571 (+)NCBI
RGSC_v3.4192,225,209 - 2,382,805 (+)RGD
Celera192,130,072 - 2,287,470 (+)RGD
Sequence:
RefSeq Acc Id: XM_006255059   ⟹   XP_006255121
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8192,200,561 - 2,310,662 (+)NCBI
mRatBN7.2192,194,173 - 2,305,750 (+)NCBI
Rnor_6.0192,437,105 - 2,549,767 (+)NCBI
Rnor_5.0192,372,260 - 2,531,571 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063278319   ⟹   XP_063134389
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8192,152,961 - 2,310,662 (+)NCBI
Protein RefSeqs NP_445844 (Get FASTA)   NCBI Sequence Viewer  
  XP_006255121 (Get FASTA)   NCBI Sequence Viewer  
  XP_063134389 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF87052 (Get FASTA)   NCBI Sequence Viewer  
  EDL87257 (Get FASTA)   NCBI Sequence Viewer  
  EDL87258 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000018535
  ENSRNOP00000018535.3
RefSeq Acc Id: NP_445844   ⟸   NM_053392
- UniProtKB: F1MAH6 (UniProtKB/TrEMBL),   A6JXY0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255121   ⟸   XM_006255059
- Peptide Label: isoform X1
- UniProtKB: F1MAH6 (UniProtKB/TrEMBL),   A6JXY0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000018535   ⟸   ENSRNOT00000018535
RefSeq Acc Id: XP_063134389   ⟸   XM_063278319
- Peptide Label: isoform X1
- UniProtKB: F1MAH6 (UniProtKB/TrEMBL),   A6JXY0 (UniProtKB/TrEMBL)
Cadherin

Name Modeler Protein Id AA Range Protein Structure
AF-F1MAH6-F1-model_v2 AlphaFold F1MAH6 1-796 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13700916
Promoter ID:EPDNEW_R11440
Type:initiation region
Name:Cdh11_2
Description:cadherin 11
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11441  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0192,393,053 - 2,393,113EPDNEW
RGD ID:13700917
Promoter ID:EPDNEW_R11441
Type:single initiation site
Name:Cdh11_1
Description:cadherin 11
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11440  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0192,393,201 - 2,393,261EPDNEW


1 to 28 of 28 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-6619 BioCyc
Ensembl Genes ENSRNOG00000013481 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018535 ENTREZGENE
  ENSRNOT00000018535.6 UniProtKB/TrEMBL
Gene3D-CATH 4.10.900.10 UniProtKB/TrEMBL
  Cadherins UniProtKB/TrEMBL
InterPro Cadherin UniProtKB/TrEMBL
  Cadherin UniProtKB/TrEMBL
  Cadherin-like UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
  Cadherin_cytoplasmic-dom UniProtKB/TrEMBL
  Catenin_binding_dom UniProtKB/TrEMBL
KEGG Report rno:84407 UniProtKB/TrEMBL
NCBI Gene 84407 ENTREZGENE
PANTHER CADHERIN-11 UniProtKB/TrEMBL
  PTHR24027 UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
  Cadherin_C UniProtKB/TrEMBL
PhenoGen Cdh11 PhenoGen
PRINTS CADHERIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013481 RatGTEx
SMART SM00112 UniProtKB/TrEMBL
Superfamily-SCOP Cadherin UniProtKB/TrEMBL
UniProt A6JXX9_RAT UniProtKB/TrEMBL
  A6JXY0 ENTREZGENE, UniProtKB/TrEMBL
  F1MAH6 ENTREZGENE, UniProtKB/TrEMBL
1 to 28 of 28 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-01-20 Cdh11  cadherin 11    cadherin-11  Name updated 1299863 APPROVED
2002-08-07 Cdh11  cadherin-11      Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_expression expressed in the testis 68759