D19Rat34 Marker Search Result - Rat Genome Database

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Marker: D19Rat34

Symbol: D19Rat34
Previously known as: oxsts6508; R0084-A05; 
RGD ID: 39128
Expected Size: 256 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8192,194,317 - 2,194,573 (+)Marker Load Pipeline
mRatBN7.2192,187,927 - 2,188,183 (+)MAPPERmRatBN7.2
Rnor_6.0192,432,963 - 2,433,218NCBIRnor6.0
Rnor_5.0192,413,720 - 2,413,975UniSTSRnor5.0
RGSC_v3.4192,264,957 - 2,265,367RGDRGSC3.4
RGSC_v3.4192,265,038 - 2,265,293UniSTSRGSC3.4
RGSC_v3.1192,265,038 - 2,265,293RGD
Celera192,169,444 - 2,169,700UniSTS
RH 3.4 Map190.0RGD
RH 3.4 Map190.0UniSTS
RH 2.0 Map190.0RGD
SHRSP x BN Map190.0RGD
FHH x ACI Map190.0RGD
Cytogenetic Map19p14UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
QTLs:   Uae12   Uae39   Foco7  
Genes:   Cdh11  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer CCAGAGCAGAGAAAAGCTCG
Reverse Primer TGTCCAGTATGCTCAAGGCA
 
Template 
CCCACATAAAATAAGCTAATATCATCTTTTAAAAAACATTTTAATAAGGTGCTGAAGTGTAGGT
CATTCATTGTTCTCATGCTTGTCCAGTATGCTCAAGGCAAAACACACCACACCACACCACACAC
ACACACACACACACACACACACACCGAGAGAAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGGAGCAAACATCAAAGTCAATAATTTTTCTATTCAGAAAAATCCAAA
GCAAATTGTGTTCTAAAAAGTAAGAAGCTTAAAATACTATTTTTTCATACACACGAGCTTTTCT
CTGCTCTGGAAACCTTTGTTTGATAAGATGGCTGTGCTGAAGAGACTGTCTGAACAACTAAGCC
CTGGAATGTATTCCCTTGTGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTG
TGTGAAATTGTTATNCGCTCACAATCACANACATAGAGCGGNGATAAGTGTAAGCTGGTGTGCT
NTGAGTGAGTNCTCANTNNNNGGTNNCCATCCGNTCAGCGGAACTNCGGCANTNTTAT

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
619742Cdh11cadherin 111921484472305754Rat

Nucleotide Sequences
GenBank Nucleotide CH474006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19128982497Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127355345Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124688055Rat
631678Cm9Cardiac mass QTL 94.270.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)19128982497Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 387481 UniSTS
  84407 UniSTS