Lrrc4c (leucine rich repeat containing 4C) - Rat Genome Database

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Gene: Lrrc4c (leucine rich repeat containing 4C) Rattus norvegicus
Analyze
Symbol: Lrrc4c
Name: leucine rich repeat containing 4C
RGD ID: 1311013
Description: Predicted to enable cell-cell adhesion mediator activity. Predicted to be involved in modulation of chemical synaptic transmission; regulation of axonogenesis; and synaptic membrane adhesion. Predicted to be located in membrane. Predicted to be active in Schaffer collateral - CA1 synapse; glutamatergic synapse; and plasma membrane. Predicted to be integral component of postsynaptic density membrane. Orthologous to human LRRC4C (leucine rich repeat containing 4C); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine; aflatoxin B1.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: leucine-rich repeat-containing protein 4C; LOC311236; RGD1311013; similar to NAG14 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: Lrrc4cTn(sb-T2/Bart3)2.224Mcwi   Lrrc4cTn(sb-T2/Bart3)2.254Mcwi  
Genetic Models: F344-Lrrc4cTn(sb-T2/Bart3)2.224Mcwi F344-Lrrc4cTn(sb-T2/Bart3)2.254Mcwi
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2382,305,244 - 83,684,039 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl383,483,851 - 83,687,774 (+)Ensembl
Rnor_6.0385,421,169 - 86,821,783 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl385,421,426 - 86,819,375 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0392,119,546 - 92,392,069 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0392,537,591 - 92,682,037 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0393,268,661 - 93,502,229 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4380,921,606 - 82,413,671 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1382,143,382 - 82,309,562 (+)NCBI
Celera381,468,604 - 82,840,791 (+)NCBICelera
Cytogenetic Map3q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:14595443   PMID:22664934   PMID:23971736   PMID:23986473   PMID:25411505  


Genomics

Comparative Map Data
Lrrc4c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2382,305,244 - 83,684,039 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl383,483,851 - 83,687,774 (+)Ensembl
Rnor_6.0385,421,169 - 86,821,783 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl385,421,426 - 86,819,375 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0392,119,546 - 92,392,069 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0392,537,591 - 92,682,037 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0393,268,661 - 93,502,229 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4380,921,606 - 82,413,671 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1382,143,382 - 82,309,562 (+)NCBI
Celera381,468,604 - 82,840,791 (+)NCBICelera
Cytogenetic Map3q31NCBI
LRRC4C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381140,114,199 - 41,459,652 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1140,114,203 - 41,459,773 (-)EnsemblGRCh38hg38GRCh38
GRCh371140,135,749 - 41,481,202 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361140,092,329 - 40,272,240 (-)NCBINCBI36hg18NCBI36
Celera1140,289,300 - 40,469,240 (-)NCBI
Cytogenetic Map11p12NCBI
HuRef1139,843,216 - 41,188,674 (-)NCBIHuRef
CHM1_11140,134,701 - 41,479,981 (-)NCBICHM1_1
T2T-CHM13v2.01140,260,753 - 41,606,210 (-)NCBI
Lrrc4c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39296,148,514 - 97,466,871 (+)NCBIGRCm39mm39
GRCm39 Ensembl296,148,514 - 97,462,011 (+)Ensembl
GRCm38296,318,169 - 97,631,672 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl296,318,169 - 97,631,666 (+)EnsemblGRCm38mm10GRCm38
MGSCv37297,307,831 - 97,471,821 (+)NCBIGRCm37mm9NCBIm37
MGSCv36297,268,496 - 97,432,503 (+)NCBImm8
Celera298,823,530 - 98,987,946 (+)NCBICelera
Cytogenetic Map2E1NCBI
Lrrc4c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554226,850,747 - 6,854,173 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554225,637,650 - 6,854,173 (+)NCBIChiLan1.0ChiLan1.0
LRRC4C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11140,486,371 - 40,691,436 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1140,486,482 - 40,488,404 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01140,094,944 - 41,451,184 (-)NCBIMhudiblu_PPA_v0panPan3
LRRC4C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11827,687,197 - 28,851,487 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1828,841,164 - 28,843,083 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1827,367,029 - 28,521,710 (+)NCBI
ROS_Cfam_1.01828,306,320 - 29,456,756 (+)NCBI
ROS_Cfam_1.0 Ensembl1829,297,423 - 29,457,017 (+)Ensembl
UMICH_Zoey_3.11827,842,475 - 28,996,475 (+)NCBI
UNSW_CanFamBas_1.01827,462,537 - 28,617,328 (+)NCBI
UU_Cfam_GSD_1.01828,073,129 - 29,228,789 (+)NCBI
Lrrc4c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494724,619,335 - 25,725,787 (+)NCBI
SpeTri2.0NW_0049367731,262,957 - 1,602,092 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRRC4C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl221,457,984 - 21,634,161 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1220,417,294 - 21,634,205 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2222,296,511 - 22,763,206 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LRRC4C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1125,025,991 - 25,219,179 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl125,210,154 - 25,212,076 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038121,081,073 - 122,432,563 (+)NCBIVero_WHO_p1.0
Lrrc4c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247677,280,484 - 7,381,831 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247676,463,912 - 7,382,226 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D3Rat29  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2383,597,038 - 83,597,180 (+)MAPPERmRatBN7.2
Rnor_6.0386,734,127 - 86,734,268NCBIRnor6.0
Rnor_5.0393,416,434 - 93,416,575UniSTSRnor5.0
RGSC_v3.4382,326,592 - 82,326,733UniSTSRGSC3.4
RGSC_v3.4382,326,572 - 82,326,969RGDRGSC3.4
RGSC_v3.1382,223,020 - 82,223,161RGD
Celera382,755,568 - 82,755,709UniSTS
RH 3.4 Map3661.8RGD
RH 3.4 Map3661.8UniSTS
RH 2.0 Map3463.7RGD
SHRSP x BN Map344.5098RGD
Cytogenetic Map3q31UniSTS
D3Rat125  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2382,443,707 - 82,443,953 (+)MAPPERmRatBN7.2
Rnor_6.0385,558,730 - 85,558,975NCBIRnor6.0
Rnor_5.0392,257,107 - 92,257,352UniSTSRnor5.0
RGSC_v3.4381,082,021 - 81,082,266UniSTSRGSC3.4
RGSC_v3.4381,081,993 - 81,082,336RGDRGSC3.4
RGSC_v3.1380,978,449 - 80,978,694RGD
Celera381,607,822 - 81,608,075UniSTS
RH 3.4 Map3663.3RGD
RH 3.4 Map3663.3UniSTS
RH 2.0 Map3458.8RGD
SHRSP x BN Map343.6699RGD
FHH x ACI Map348.3899RGD
Cytogenetic Map3q31UniSTS
D3Rat176  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.4381,470,283 - 81,470,426UniSTSRGSC3.4
RGSC_v3.4381,470,282 - 81,470,426RGDRGSC3.4
RGSC_v3.1381,366,710 - 81,367,034RGD
Celera381,939,560 - 81,939,703UniSTS
SHRSP x BN Map343.6699RGD
SHRSP x BN Map343.6699UniSTS
Cytogenetic Map3q31UniSTS
D3Rat175  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera381,726,324 - 81,726,502UniSTS
RH 3.4 Map3663.3UniSTS
RH 3.4 Map3663.3RGD
RH 2.0 Map3459.7RGD
SHRSP x BN Map343.6699RGD
Cytogenetic Map3q31UniSTS
D3Rat174  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2383,007,962 - 83,008,110 (+)MAPPERmRatBN7.2
Rnor_6.0386,376,225 - 86,376,372NCBIRnor6.0
Rnor_5.0393,060,584 - 93,060,731UniSTSRnor5.0
RGSC_v3.4381,706,527 - 81,706,675RGDRGSC3.4
RGSC_v3.4381,706,528 - 81,706,675UniSTSRGSC3.4
RGSC_v3.1381,602,955 - 81,603,103RGD
Celera382,167,099 - 82,167,246UniSTS
RH 2.0 Map3450.7RGD
SHRSP x BN Map344.5698RGD
Cytogenetic Map3q31UniSTS
BF394313  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2382,461,597 - 82,461,723 (+)MAPPERmRatBN7.2
Rnor_6.0385,576,620 - 85,576,745NCBIRnor6.0
Rnor_5.0392,274,997 - 92,275,122UniSTSRnor5.0
RGSC_v3.4381,099,911 - 81,100,036UniSTSRGSC3.4
Celera381,625,707 - 81,625,832UniSTS
RH 3.4 Map3657.4UniSTS
Cytogenetic Map3q31UniSTS
RH133839  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2383,517,644 - 83,517,825 (+)MAPPERmRatBN7.2
Rnor_6.0386,655,000 - 86,655,180NCBIRnor6.0
Rnor_6.0386,050,740 - 86,050,920NCBIRnor6.0
Rnor_5.0393,337,307 - 93,337,487UniSTSRnor5.0
Rnor_5.0392,736,796 - 92,736,976UniSTSRnor5.0
RGSC_v3.4382,247,337 - 82,247,517UniSTSRGSC3.4
Celera382,676,401 - 82,676,581UniSTS
RH 3.4 Map3662.1UniSTS
Cytogenetic Map3q31UniSTS
RH144357  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2383,103,605 - 83,103,713 (+)MAPPERmRatBN7.2
mRatBN7.21133,825,530 - 33,827,086 (+)MAPPERmRatBN7.2
Rnor_6.01134,776,114 - 34,777,667NCBIRnor6.0
Rnor_6.0385,809,003 - 85,809,110NCBIRnor6.0
Rnor_5.01138,367,319 - 38,368,872UniSTSRnor5.0
Rnor_5.0392,495,960 - 92,496,067UniSTSRnor5.0
RGSC_v3.41134,787,172 - 34,788,725UniSTSRGSC3.4
RGSC_v3.4381,813,127 - 81,813,234UniSTSRGSC3.4
Celera382,261,357 - 82,261,464UniSTS
Celera1134,623,361 - 34,624,897UniSTS
RH 3.4 Map3657.4UniSTS
Cytogenetic Map11q11UniSTS
Cytogenetic Map3q31UniSTS
BE121072  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2382,401,684 - 82,401,843 (+)MAPPERmRatBN7.2
Rnor_6.0385,517,617 - 85,517,775NCBIRnor6.0
Rnor_5.0392,215,994 - 92,216,152UniSTSRnor5.0
RGSC_v3.4381,020,135 - 81,020,293UniSTSRGSC3.4
Celera381,565,104 - 81,565,262UniSTS
RH 3.4 Map3661.7UniSTS
Cytogenetic Map3q31UniSTS
RH141987  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2383,623,866 - 83,624,047 (+)MAPPERmRatBN7.2
Rnor_6.0386,761,451 - 86,761,631NCBIRnor6.0
Rnor_5.0393,443,758 - 93,443,938UniSTSRnor5.0
RGSC_v3.4382,354,795 - 82,354,975UniSTSRGSC3.4
Celera382,782,652 - 82,782,832UniSTS
RH 3.4 Map3663.3UniSTS
Cytogenetic Map3q31UniSTS
BE119017  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2383,665,881 - 83,666,047 (+)MAPPERmRatBN7.2
Rnor_6.0386,803,626 - 86,803,791NCBIRnor6.0
Rnor_5.0393,485,933 - 93,486,098UniSTSRnor5.0
RGSC_v3.4382,397,375 - 82,397,540UniSTSRGSC3.4
Celera382,824,531 - 82,824,696UniSTS
RH 3.4 Map3658.6UniSTS
Cytogenetic Map3q31UniSTS
Angptl1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2382,455,256 - 82,455,288 (+)MAPPERmRatBN7.2
Rnor_6.0385,570,279 - 85,570,310NCBIRnor6.0
Rnor_5.0392,268,656 - 92,268,687UniSTSRnor5.0
RGSC_v3.4381,093,570 - 81,093,601UniSTSRGSC3.4
Celera381,619,365 - 81,619,396UniSTS
Cytogenetic Map3q31UniSTS
Lrrc4c  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2383,679,770 - 83,680,972 (+)MAPPERmRatBN7.2
Rnor_6.0386,817,515 - 86,818,716NCBIRnor6.0
Rnor_5.0393,499,822 - 93,501,023UniSTSRnor5.0
RGSC_v3.4382,411,264 - 82,412,465UniSTSRGSC3.4
Celera382,838,384 - 82,839,585UniSTS
Cytogenetic Map3q31UniSTS
ha2854  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2382,304,096 - 82,305,527 (+)MAPPERmRatBN7.2
Rnor_6.0385,420,022 - 85,421,452NCBIRnor6.0
Rnor_5.0392,118,399 - 92,119,829UniSTSRnor5.0
Celera381,467,455 - 81,468,887UniSTS
Cytogenetic Map3q31UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)33851780383517803Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)33945463789115240Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)33945463789115240Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34382736490905114Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)35318469289878207Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)35378111291609953Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)35378111291609953Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35378111291609953Rat
1581568Rf53Renal function QTL 53total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)36113434889115068Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)364655305115665732Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)373376539118376539Rat
1581546Pur13Proteinuria QTL 132.930.0335total urine protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
2302273Gluco35Glucose level QTL 355.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)380800231114297550Rat


Genetic Models
This gene Lrrc4c is modified in the following models/strains
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:75
Count of miRNA genes:53
Interacting mature miRNAs:71
Transcripts:ENSRNOT00000044595
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 64 9
Low 2 32 40 31 12 31 6 7 10 22 24 9 6
Below cutoff 1 9 17 10 7 10 2 3 13 5 2 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000044595   ⟹   ENSRNOP00000044234
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl383,483,851 - 83,681,631 (+)Ensembl
Rnor_6.0 Ensembl386,621,205 - 86,819,375 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093228
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl386,246,593 - 86,246,680 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093565
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl385,421,426 - 85,696,206 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000094844   ⟹   ENSRNOP00000081054
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl383,517,205 - 83,687,774 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111623   ⟹   ENSRNOP00000096384
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl383,517,205 - 83,687,774 (+)Ensembl
RefSeq Acc Id: NM_001107753   ⟹   NP_001101223
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2382,305,244 - 83,682,178 (+)NCBI
Rnor_6.0385,421,169 - 86,819,922 (+)NCBI
Rnor_5.0392,119,546 - 92,392,069 (+)NCBI
Rnor_5.0392,537,591 - 92,682,037 (+)NCBI
Rnor_5.0393,268,661 - 93,502,229 (+)NCBI
RGSC_v3.4380,921,606 - 82,413,671 (+)RGD
Celera381,468,604 - 82,840,791 (+)RGD
Sequence:
RefSeq Acc Id: XM_017591722   ⟹   XP_017447211
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2383,517,221 - 83,684,039 (+)NCBI
Rnor_6.0386,653,484 - 86,821,783 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591724   ⟹   XP_017447213
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2383,517,221 - 83,684,039 (+)NCBI
Rnor_6.0386,653,484 - 86,821,783 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591725   ⟹   XP_017447214
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2383,517,221 - 83,684,039 (+)NCBI
Rnor_6.0386,653,484 - 86,821,783 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591729   ⟹   XP_017447218
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2383,517,219 - 83,684,039 (+)NCBI
Rnor_6.0386,653,484 - 86,821,783 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039104916   ⟹   XP_038960844
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2383,387,236 - 83,684,039 (+)NCBI
RefSeq Acc Id: XM_039104917   ⟹   XP_038960845
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2383,387,236 - 83,684,039 (+)NCBI
RefSeq Acc Id: XM_039104918   ⟹   XP_038960846
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2383,401,617 - 83,684,039 (+)NCBI
RefSeq Acc Id: XM_039104919   ⟹   XP_038960847
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2383,517,221 - 83,684,039 (+)NCBI
RefSeq Acc Id: XM_039104920   ⟹   XP_038960848
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2383,517,219 - 83,684,039 (+)NCBI
RefSeq Acc Id: XM_039104921   ⟹   XP_038960849
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2383,387,235 - 83,684,039 (+)NCBI
RefSeq Acc Id: XM_039104922   ⟹   XP_038960850
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2383,517,219 - 83,684,039 (+)NCBI
RefSeq Acc Id: XM_039104923   ⟹   XP_038960851
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2383,517,219 - 83,684,039 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001101223   ⟸   NM_001107753
- Peptide Label: precursor
- UniProtKB: D3ZXT1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447213   ⟸   XM_017591724
- Peptide Label: isoform X1
- UniProtKB: D3ZXT1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447211   ⟸   XM_017591722
- Peptide Label: isoform X1
- UniProtKB: D3ZXT1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447218   ⟸   XM_017591729
- Peptide Label: isoform X1
- UniProtKB: D3ZXT1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447214   ⟸   XM_017591725
- Peptide Label: isoform X1
- UniProtKB: D3ZXT1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000044234   ⟸   ENSRNOT00000044595
RefSeq Acc Id: XP_038960849   ⟸   XM_039104921
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038960844   ⟸   XM_039104916
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038960845   ⟸   XM_039104917
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038960846   ⟸   XM_039104918
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038960850   ⟸   XM_039104922
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038960848   ⟸   XM_039104920
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038960851   ⟸   XM_039104923
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038960847   ⟸   XM_039104919
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000096384   ⟸   ENSRNOT00000111623
RefSeq Acc Id: ENSRNOP00000081054   ⟸   ENSRNOT00000094844
Protein Domains
Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZXT1-F1-model_v2 AlphaFold D3ZXT1 1-640 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311013 AgrOrtholog
BioCyc Gene G2FUF-48636 BioCyc
Ensembl Genes ENSRNOG00000029798 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000044234 ENTREZGENE
  ENSRNOP00000044234.3 UniProtKB/TrEMBL
  ENSRNOP00000081054 ENTREZGENE
  ENSRNOP00000081054.1 UniProtKB/TrEMBL
  ENSRNOP00000096384 ENTREZGENE
  ENSRNOP00000096384.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000044595 ENTREZGENE
  ENSRNOT00000044595.5 UniProtKB/TrEMBL
  ENSRNOT00000094844 ENTREZGENE
  ENSRNOT00000094844.1 UniProtKB/TrEMBL
  ENSRNOT00000111623 ENTREZGENE
  ENSRNOT00000111623.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
InterPro Ig-like UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  L_dom-like UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR-contain_N UniProtKB/TrEMBL
  LRR_5 UniProtKB/TrEMBL
  LRRC4C UniProtKB/TrEMBL
KEGG Report rno:311236 UniProtKB/TrEMBL
NCBI Gene 311236 ENTREZGENE
PANTHER PTHR24369:SF8 UniProtKB/TrEMBL
Pfam I-set UniProtKB/TrEMBL
  LRR_5 UniProtKB/TrEMBL
  LRR_8 UniProtKB/TrEMBL
PhenoGen Lrrc4c PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
  LRR UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  IGv UniProtKB/TrEMBL
  LRR_TYP UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt D3ZXT1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Lrrc4c  leucine rich repeat containing 4C   Lrrc4c_predicted  leucine rich repeat containing 4C (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Lrrc4c_predicted  leucine rich repeat containing 4C (predicted)  RGD1311013_predicted  similar to NAG14 protein (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1311013_predicted  similar to NAG14 protein (predicted)  LOC311236_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC311236_predicted  similar to NAG14 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL