Gene: Lrrc4c (leucine rich repeat containing 4C) Rattus norvegicus
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Symbol: Lrrc4c
Name: leucine rich repeat containing 4C
Description: ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); cell-cell adhesion mediator activity (ortholog); INVOLVED IN modulation of chemical synaptic transmission (ortholog); regulation of axonogenesis (ortholog); synaptic membrane adhesion (ortholog); FOUND IN glutamatergic synapse (ortholog); integral component of postsynaptic density membrane (ortholog); membrane (ortholog); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; benzo[a]pyrene; bisphenol A
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: leucine-rich repeat-containing protein 4C; LOC311236; RGD1311013; similar to NAG14 protein
Orthologs:
Homo sapiens (human) : LRRC4C (leucine rich repeat containing 4C)  HGNC  Alliance
Mus musculus (house mouse) : Lrrc4c (leucine rich repeat containing 4C)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Lrrc4c (leucine rich repeat containing 4C)
Pan paniscus (bonobo/pygmy chimpanzee) : LRRC4C (leucine rich repeat containing 4C)
Canis lupus familiaris (dog) : LRRC4C (leucine rich repeat containing 4C)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Lrrc4c (leucine rich repeat containing 4C)
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Allele / Splice: Lrrc4cTn(sb-T2/Bart3)2.224Mcwi   Lrrc4cTn(sb-T2/Bart3)2.254Mcwi  
Genetic Models: F344-Lrrc4cTn(sb-T2/Bart3)2.224Mcwi F344-Lrrc4cTn(sb-T2/Bart3)2.254Mcwi
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: suggests misassembly; Note: This gene aligns across a gap in the Rnor_6.0 reference genome assembly, and therefore, annotation of this gene is split across NW_007905762.1 and NW_007905761.1 in NCBI's Rattus norvegicus Annotation Release 105. [19 Jun 2015]
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0385,421,169 - 86,821,783 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0392,537,591 - 92,682,037 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0393,268,661 - 93,502,229 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0392,119,546 - 92,392,069 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4380,921,606 - 82,413,671 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1382,143,382 - 82,309,562 (+)NCBI
Celera381,468,604 - 82,840,791 (+)NCBICelera
Cytogenetic Map3q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
Genetic Models
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Lrrc4c
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1311013
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2018-10-09
Status: ACTIVE