Spir1_m QTL Report (Mus musculus) - Rat Genome Database

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QTL Registration

QTL: Spir1_m (Streptococcus pneumoniae infection resistance 1 (mouse)) Mus musculus

Symbol: Spir1_m
Name: Streptococcus pneumoniae infection resistance 1 (mouse)
RGD ID: 1558893
Trait: Not determined
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm39710,305,798 - 44,305,936MOUSEQTLGRCm39
GRCm38710,606,373 - 44,606,511MOUSEQTLGRCm38
MGSCv37711,391,392 - 45,391,530 (+)MOUSEQTLGRCm37
cM Map715.94MOUSEQTL
Cross Type: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Spir1_mMousedecreased susceptibility to bacterial infection  IAGP 5509061 MGIPMID:12925893
Spir1_mMouseimmune system phenotype  IEA 704405Created by mouse qtl pipelineMGIPMID:12925893
Spir1_mMouseincreased susceptibility to bacterial infection  IAGP 5509061 MGIPMID:12925893

#
Reference Title
Reference Citation
1. Mouse Genome Database (MGD) Mouse Genome Database (MGD)
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
PMID:12925893  



1 to 20 of 2038 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1618100Vmn1r69vomeronasal 1 receptor 6971031368310315414Mouse
4785374Vmn1r-ps50vomeronasal 1 receptor, pseudogene 5071033867010339135Mouse
1318566Vmn1r70vomeronasal 1 receptor 7071036751410368410Mouse
4799867Vmn1r-ps51vomeronasal 1 receptor, pseudogene 5171038422610384545Mouse
1618617Gm6900predicted gene 690071039023310390901Mouse
4820431Vmn1r-ps52vomeronasal 1 receptor, pseudogene 5271040070410401554Mouse
1557869Nlrp4bNLR family, pyrin domain containing 4B71042172010464095Mouse
2294307Gm5130predicted gene 513071046963510480229Mouse
1551724Vmn1r71vomeronasal 1 receptor 7171048142910483465Mouse
401715672LOC131372796STARR-seq mESC enhancer starr_1801571049106610492287Mouse
401714141LOC131372797STARR-seq mESC enhancer starr_1801671050280310505324Mouse
1621152Zscan4azinc finger and SCAN domain containing 4A71052816810532992Mouse
5142777Gm18781predicted gene, 1878171053914910540212Mouse
401710350LOC131372798STARR-seq mESC enhancer starr_1801771054220710544573Mouse
2309993Gm7203predicted gene 720371054479210554933Mouse
2294965Gm4903predicted gene 490371057929310580119Mouse
401701533LOC131372799STARR-seq mESC enhancer starr_1801871058353110584451Mouse
1621728Gm7836predicted gene 783671058468610585625Mouse
401700654LOC131372800STARR-seq mESC enhancer starr_1801971058659410587482Mouse
5142924Gm18638predicted gene, 1863871061519810616328Mouse

1 to 20 of 2038 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match

1 to 10 of 62 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
38501071Stsl6_mSalmonella typhimurium susceptibility locus 6 (mouse)73419942551149748Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73444786968448018Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74114882075148965Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
25394571Skmw59_mskeletal muscle weight 59, TA (mouse)74422494344675382Mouse
1357469Kidq5_mkidney weight QTL 5 (mouse)Not determined73349772758148965Mouse
25394569Skmw57_mskeletal muscle weight 57, gastroc (mouse)7458046916687861Mouse
4142003W3q10_mweight 3 weeks QTL 10 (mouse)Not determined3349772758148965Mouse

1 to 10 of 62 rows


Database
Acc Id
Source(s)
MGD MGI:2661190 MouseQtl
NCBI Nucleotide MGI:2661190

Note Type Note Reference