Vmn1r86 (vomeronasal 1 receptor 86) - Rat Genome Database

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Pathways
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Gene: Vmn1r86 (vomeronasal 1 receptor 86) Mus musculus
Analyze
No known orthologs.
Symbol: Vmn1r86
Name: vomeronasal 1 receptor 86
RGD ID: 3753474
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ENSMUSG00000070816; Gm10301; vomeronasal 1 receptor Vmn1r86
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39712,835,924 - 12,836,874 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl712,831,458 - 12,853,844 (-)EnsemblGRCm39 Ensembl
GRCm38713,101,997 - 13,102,947 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl713,097,531 - 13,119,917 (-)EnsemblGRCm38mm10GRCm38
MGSCv37713,687,346 - 13,688,296 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera710,729,083 - 10,730,033 (-)NCBICelera
Cytogenetic Map7A1NCBI
cM Map77.76NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19952141   PMID:20003482   PMID:21873635  


Genomics

Variants

.
Variants in Vmn1r86
25 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:50
Count of miRNA genes:50
Interacting mature miRNAs:50
Transcripts:ENSMUST00000094828
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121698146Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121821047Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121821047Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1302115Abhr3_mallergen-induced bronchial hyperresponsiveness 3 (mouse)Not determined7331599616637423Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25394569Skmw57_mskeletal muscle weight 57, gastroc (mouse)7458046916687861Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined7998886743988984Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000094828   ⟹   ENSMUSP00000092423
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl712,835,924 - 12,836,874 (-)Ensembl
GRCm38.p6 Ensembl713,101,997 - 13,102,947 (-)Ensembl
RefSeq Acc Id: ENSMUST00000226604   ⟹   ENSMUSP00000154276
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl712,831,458 - 12,853,844 (-)Ensembl
GRCm38.p6 Ensembl713,097,531 - 13,119,917 (-)Ensembl
RefSeq Acc Id: ENSMUST00000227220   ⟹   ENSMUSP00000154549
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl712,831,458 - 12,853,779 (-)Ensembl
GRCm38.p6 Ensembl713,097,531 - 13,119,852 (-)Ensembl
RefSeq Acc Id: ENSMUST00000227700   ⟹   ENSMUSP00000154464
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl712,831,458 - 12,853,843 (-)Ensembl
GRCm38.p6 Ensembl713,097,531 - 13,119,916 (-)Ensembl
RefSeq Acc Id: NM_001167536   ⟹   NP_001161008
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39712,835,924 - 12,836,874 (-)NCBI
GRCm38713,101,997 - 13,102,947 (-)ENTREZGENE
MGSCv37713,687,346 - 13,688,296 (-)RGD
Celera710,729,083 - 10,730,033 (-)RGD
cM Map7 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001161008 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAK98778 (Get FASTA)   NCBI Sequence Viewer  
  BAB79224 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000092423
  ENSMUSP00000092423.3
  ENSMUSP00000154276.2
  ENSMUSP00000154464.2
  ENSMUSP00000154549.2
Reference Protein Sequences
RefSeq Acc Id: NP_001161008   ⟸   NM_001167536
- UniProtKB: L7N213 (UniProtKB/TrEMBL),   Q8VIB9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000154464   ⟸   ENSMUST00000227700
RefSeq Acc Id: ENSMUSP00000154549   ⟸   ENSMUST00000227220
RefSeq Acc Id: ENSMUSP00000154276   ⟸   ENSMUST00000226604
RefSeq Acc Id: ENSMUSP00000092423   ⟸   ENSMUST00000094828
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-L7N213-F1-model_v2 AlphaFold L7N213 1-316 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:4438438 AgrOrtholog
Ensembl Genes ENSMUSG00000070816 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000094828 ENTREZGENE
  ENSMUST00000094828.3 UniProtKB/TrEMBL
  ENSMUST00000226604.2 UniProtKB/TrEMBL
  ENSMUST00000227220.2 UniProtKB/TrEMBL
  ENSMUST00000227700.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Vmron_rcpt_1 UniProtKB/TrEMBL
KEGG Report mmu:100312473 UniProtKB/TrEMBL
MGD MGI:4438438 ENTREZGENE
NCBI Gene 100312473 ENTREZGENE
PANTHER PTHR24062 UniProtKB/TrEMBL
  VOMERONASAL TYPE-1 RECEPTOR UniProtKB/TrEMBL
Pfam V1R UniProtKB/TrEMBL
PhenoGen Vmn1r86 PhenoGen
PRINTS VOMERONASL1R UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A2I3BR71_MOUSE UniProtKB/TrEMBL
  L7N213 ENTREZGENE, UniProtKB/TrEMBL
  Q8VIB9 ENTREZGENE, UniProtKB/TrEMBL