Gm10046 (predicted gene 10046) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Gm10046 (predicted gene 10046) Mus musculus
Analyze
Symbol: Gm10046
Name: predicted gene 10046
RGD ID: 2314808
MGI Page MGI
Description:
Type: ncrna (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: ENSMUSG00000058661
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39727,465,098 - 27,470,397 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl727,469,930 - 27,470,055 (+)EnsemblGRCm39 Ensembl
GRCm39 Ensembl727,465,076 - 27,470,397 (+)EnsemblGRCm39 Ensembl
GRCm38727,765,673 - 27,770,972 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl727,765,673 - 27,770,972 (+)EnsemblGRCm38mm10GRCm38
MGSCv37728,550,692 - 28,555,991 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36728,539,684 - 28,555,991 (+)NCBIMGSCv36mm8
Celera722,345,209 - 22,350,277 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map715.97NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in Gm10046
184 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined7998886743988984Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71663729349159331Mouse
1301041Prnr2_mprion resistance 2 (mouse)Not determined71872879439674033Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71928001553280104Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined71984225053842367Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72267388756674033Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72288857256888716Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72306653157066531Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
7394747asp3_maudiogenic seizure prone 3 (mouse)Not determined72730579836842367Mouse

Markers in Region
AI449354  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38727,753,400 - 27,753,508UniSTSGRCm38
MGSCv37728,538,419 - 28,538,527UniSTSGRCm37
Celera722,332,934 - 22,333,042UniSTS
Cytogenetic Map7A3UniSTS
cM Map712.3UniSTS
Whitehead/MRC_RH7387.73UniSTS
AI426106  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38727,753,490 - 27,753,647UniSTSGRCm38
MGSCv37728,538,509 - 28,538,666UniSTSGRCm37
Celera722,333,024 - 22,333,181UniSTS
Cytogenetic Map7A3UniSTS
cM Map712.3UniSTS
Whitehead/MRC_RH7388.21UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000208208
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl727,465,076 - 27,470,397 (+)Ensembl
GRCm38.p6 Ensembl727,765,673 - 27,770,972 (+)Ensembl
RefSeq Acc Id: ENSMUST00000208942
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl727,469,930 - 27,470,055 (+)Ensembl
GRCm38.p6 Ensembl727,770,505 - 27,770,630 (+)Ensembl
RefSeq Acc Id: NR_033484
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39727,465,098 - 27,470,397 (+)NCBI
GRCm38727,765,673 - 27,770,972 (+)ENTREZGENE
MGSCv37728,550,692 - 28,555,991 (+)RGD
Celera722,345,209 - 22,350,277 (+)RGD
cM Map7 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein BAE36333 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
Protein Domains
KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000109143 Ensembl
  ENSMUSG00000121480 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000208208 ENTREZGENE
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
InterPro KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
MGD MGI:3797981 ENTREZGENE
NCBI Gene 100043229 ENTREZGENE
PANTHER KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  KRAB DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
PhenoGen Gm10046 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
RNAcentral URS000075BD55 RNACentral
SMART KRAB UniProtKB/TrEMBL
Superfamily-SCOP Krueppel-associated_box UniProtKB/TrEMBL
UniProt Q3TTJ2_MOUSE UniProtKB/TrEMBL