Zswim9 (zinc finger SWIM-type containing 9)

Gene: Zswim9 (zinc finger SWIM-type containing 9) Mus musculus

Analyze

Symbol:

Zswim9

Name:

zinc finger SWIM-type containing 9

RGD ID:

1321053

MGI Page

MGI

Description:

Acts upstream of or within hematopoietic progenitor cell differentiation. Is expressed in central nervous system. Orthologous to human ZSWIM9 (zinc finger SWIM-type containing 9).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

6330408A02Rik; hypothetical protein LOC321008; RIKEN cDNA 6330408A02 gene; uncharacterized protein C19orf68 homolog; uncharacterized protein ZSWIM9

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZSWIM9 (zinc finger SWIM-type containing 9)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Zswim9 (zinc finger SWIM-type containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Zswim9 (zinc finger SWIM-type containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZSWIM9 (zinc finger SWIM-type containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZSWIM9 (zinc finger SWIM-type containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Zswim9 (zinc finger SWIM-type containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZSWIM9 (zinc finger SWIM-type containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZSWIM9 (zinc finger SWIM-type containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Zswim9 (zinc finger SWIM-type containing 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Zswim9 (zinc finger SWIM-type containing 9)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ZSWIM9 (zinc finger SWIM-type containing 9)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	zswim9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	12,992,894 - 13,012,647 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	12,992,894 - 13,012,647 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	13,258,967 - 13,278,721 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	13,258,967 - 13,278,721 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	13,844,316 - 13,864,070 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	12,159,146 - 12,177,659 (-)	NCBI		MGSCv36	mm8
Celera	7	10,875,646 - 10,895,401 (-)	NCBI		Celera
Cytogenetic Map	7	A1	NCBI
cM Map	7	7.82	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

polycystic ovary syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

aristolochic acid A (ISO)

bisphenol A (ISO)

copper(II) sulfate (ISO)

dexamethasone (ISO)

hydrogen peroxide (ISO)

indometacin (ISO)

thioacetamide (ISO)

triptonide (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

hematopoietic progenitor cell differentiation (IGI)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:12477932	PMID:14610273	PMID:16141072	PMID:16141073	PMID:17967808	PMID:18799693	PMID:21267068	PMID:21677750	PMID:24029230
PMID:29997285

Genomics

Comparative Map Data

Zswim9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	12,992,894 - 13,012,647 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	12,992,894 - 13,012,647 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	13,258,967 - 13,278,721 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	13,258,967 - 13,278,721 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	13,844,316 - 13,864,070 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	12,159,146 - 12,177,659 (-)	NCBI		MGSCv36	mm8
Celera	7	10,875,646 - 10,895,401 (-)	NCBI		Celera
Cytogenetic Map	7	A1	NCBI
cM Map	7	7.82	NCBI

ZSWIM9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	48,170,680 - 48,197,620 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	48,170,680 - 48,197,620 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	48,673,937 - 48,700,877 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	53,365,761 - 53,392,689 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	45,540,366 - 45,565,746 (+)	NCBI		Celera
Cytogenetic Map	19	q13.33	NCBI
HuRef	19	45,055,777 - 45,082,825 (+)	NCBI		HuRef
CHM1_1	19	48,676,138 - 48,703,016 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	51,164,635 - 51,191,690 (+)	NCBI		T2T-CHM13v2.0

Zswim9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	83,222,133 - 83,243,116 (-)	NCBI		GRCr8
mRatBN7.2	1	74,144,818 - 74,165,804 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	74,144,814 - 74,166,009 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	1	75,335,183 - 75,356,130 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	75,335,894 - 75,354,820 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	76,702,804 - 76,723,755 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	73,708,507 - 73,728,764 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	73,786,759 - 73,805,609 (-)	NCBI
Celera	1	69,518,666 - 69,539,618 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

Zswim9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955609	99,805 - 118,177 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZSWIM9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	54,270,877 - 54,297,700 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	56,140,780 - 56,167,608 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	45,110,854 - 45,137,675 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	53,761,280 - 53,788,149 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	53,762,292 - 53,787,787 (+)	Ensembl	panpan1.1		panPan2

ZSWIM9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	108,082,355 - 108,105,380 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	108,082,185 - 108,104,934 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	107,565,071 - 107,588,190 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	108,608,431 - 108,631,370 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	108,608,614 - 108,631,824 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	108,253,263 - 108,276,059 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	107,921,686 - 107,944,385 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	108,789,525 - 108,811,681 (-)	NCBI		UU_Cfam_GSD_1.0

Zswim9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	20,658,188 - 20,680,603 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936664	2,276,345 - 2,298,795 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZSWIM9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	53,660,330 - 53,678,043 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	53,660,222 - 53,678,145 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	49,244,764 - 49,262,636 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZSWIM9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	41,405,448 - 41,431,031 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666073	21,192,016 - 21,217,673 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zswim9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624832	5,650,179 - 5,665,808 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Zswim9
673 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	2477
Count of miRNA genes:	673
Interacting mature miRNAs:	823
Transcripts:	ENSMUST00000108532, ENSMUST00000119139, ENSMUST00000119558, ENSMUST00000135898, ENSMUST00000137574, ENSMUST00000140530, ENSMUST00000144470
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301177	Vent3_m	ventricular size 3 (mouse)			Not determined		7	1	20511925	Mouse
10054067	Sle20_m	systematic lupus erythematosus susceptibility 20 (mouse)			Not determined		7	1	20511925	Mouse
1302188	Lxw6_m	lupus BXSB x NZW 6 (mouse)			Not determined		7	1	21698146	Mouse
12904941	Edlmmq6_m	extensor digitorum longus muscle mass QTL 6 (mouse)					7	1	21821047	Mouse
12904948	Tammq5_m	tibialis anterior muscle mass QTL 5 (mouse)					7	1	21821047	Mouse
12904953	Gmmq5_m	gastrocnemius muscle mass QTL 5 (mouse)					7	1	21821047	Mouse
1301572	Sluc30_m	susceptibility to lung cancer 30 (mouse)			Not determined		7	2431696	36431844	Mouse
1302115	Abhr3_m	allergen-induced bronchial hyperresponsiveness 3 (mouse)			Not determined		7	3315996	16637423	Mouse
1301115	Lrdm1_m	lymphoproliferation (Fas) renal disease modifier 1 (mouse)			Not determined		7	3352048	24879418	Mouse
1300722	Sle3_m	systemic lupus erythmatosus susceptibility 3 (mouse)			Not determined		7	3511728	87142720	Mouse
38501068	Tip1_m	tuberculosis immunophenotype 1, spleen CFU (mouse)					7	3602999	72549748	Mouse
25394569	Skmw57_m	skeletal muscle weight 57, gastroc (mouse)					7	4580469	16687861	Mouse
25314307	Mlh1fc2_m	MLH1 foci count 2 (mouse)					7	6502999	133501729	Mouse
12792978	Fbmd3_m	femoral bone mineral density 3, females only (mouse)					7	7050288	142367832	Mouse
1357699	Nhdlq6_m	non-HDL QTL 6 (mouse)			Not determined		7	9988867	43988984	Mouse
1558893	Spir1_m	Streptococcus pneumoniae infection resistance 1 (mouse)			Not determined		7	10305798	44305936	Mouse
10449139	Eosn1_m	eosinophil differential 1 (mouse)					7	12480877	46480877	Mouse
10449158	Eosn3_m	eosinophil differential 3 (mouse)					7	12480877	46480877	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_177312	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC161792	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK018141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK028865	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK044247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK132923	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK160064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK162673	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC075681	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466634	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CV783961	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	LXEJ02005284	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000108532 ⟹ ENSMUSP00000104172

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	12,992,895 - 13,012,647 (-)	Ensembl
GRCm38.p6 Ensembl	7	13,258,968 - 13,278,721 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000119139 ⟹ ENSMUSP00000112652

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	12,992,894 - 13,012,070 (-)	Ensembl
GRCm38.p6 Ensembl	7	13,258,967 - 13,278,144 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000119558 ⟹ ENSMUSP00000112825

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	12,992,894 - 13,012,609 (-)	Ensembl
GRCm38.p6 Ensembl	7	13,258,967 - 13,278,683 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000135898

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	12,999,653 - 13,012,647 (-)	Ensembl
GRCm38.p6 Ensembl	7	13,265,727 - 13,278,721 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000137574

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	13,007,283 - 13,012,348 (-)	Ensembl
GRCm38.p6 Ensembl	7	13,273,357 - 13,278,422 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000140530

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	13,007,174 - 13,012,596 (-)	Ensembl
GRCm38.p6 Ensembl	7	13,273,248 - 13,278,670 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000144470 ⟹ ENSMUSP00000122300

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	13,011,206 - 13,012,588 (-)	Ensembl
GRCm38.p6 Ensembl	7	13,277,280 - 13,278,662 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000211707

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	13,009,880 - 13,012,362 (-)	Ensembl
GRCm38.p6 Ensembl	7	13,275,954 - 13,278,436 (-)	Ensembl

RefSeq Acc Id:

NM_177312 ⟹ NP_796286

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	7	12,992,894 - 13,012,647 (-)	NCBI
GRCm38	7	13,258,967 - 13,278,721 (-)	ENTREZGENE
MGSCv37	7	13,844,316 - 13,864,070 (-)	RGD
Celera	7	10,875,646 - 10,895,401 (-)	RGD
cM Map	7		ENTREZGENE

Sequence:

show sequence

GTGGGGAGAGGGAGGGGCGCTGTCCCGCACAGCATGCTGGGAAGCGGCCCCAAGCCTGTCCTCC
CTGTGGATGAGCCGGTCCCAGGATGGAGCTGACAGAGCCCTTACCGAGCGCAGCCGTGCAGAAG
GAGGAACAGGAATTGTTGGATCGAACTTTCTTCTCTTGGGCTGAGTTCAGCCGCTTCTTCGACA
AGTGGTGCCAGCAGCGACTGGTAGTCTTCTCGGTGAAGAGCTCCACACGTGTGGCACGAAGCCC
CTGGGCCAACACGCCCCCACTCTACAGGCTTATCCACGTGCTCAAGTACAGCTACGTGCTGCTG
GTGTGCAAGGATGTGCGCATGCCCAACAAGTCCACAGCGTGGCCTCCCCAGCCCAGCTGCCCTG
CCTTCATCACTGTCAAGCTGAGCCCTTTGCGAGATCGACTCGTGGTGACTGAGTGCCAGCTGAC
CCACTCACACCCAGCCTGCCCACGTGAGTTCGCCTACCACTTCCGCCCAGGCCACTTGCTGGCC
AATTCCTGCCTGCCAGTCCGCATCACCAACCAGATCTCCAAACAGTTTGTGGCCCCTGCTGATG
TGCGCCGCCTGCTGACCCATTGCAAGGGCCCAGACCATGGGGTCCTAGATGCCCTGCAAGTGCT
TGAGGGGCTCTTCCGCACAGATCCGGAGGCCAAGGTGAAGCTGGTGTTCGTGGAGGATCAAGCA
ATGGTAGAGACTGTGTTCCTTCTAACATCGCGCACCAGGGCGCTGCTGCGGCGCTTCCCACGCA
TCCTATTGGTGGACCGGCTACCTGGGTTGCAGGGCACCCTGGACCTGATGGCAGTACTGTGTGT
GGACAGCGCTGGACGTGCGCGCCAGGCTGCCTGTTGCGTGGCGCGTCCCGGCACGCCTAGCCTA
CTGAGATTCATGCTGGTTTCCCTGCTGCAAAGCGCTCCTGATGTCAAAGGCCGAGTGCGCTGCC
TCACAGCTGGACCAGAGGTGGCCGGACAACTGCGTGCAGTTCGCCAGCTGTTGCCGTGTGCACG
TGTGCAGATCTGTCGCGCTCAGGGTCTAGAGACGCTCTTCAGTAAGGCACAGGAGTTGGGTGGT
GCCAGCCAGGAGGATCCGGACCTGTGGCCACTCCTCTGCCGCCTAGCAGATTCAAAATCCTATA
CTGCTTACAGCGAGGCGCTGGCTGAGTTGCGTTCCCAGGCTCCAACTGCTTTCATCAGATATTT
TGAGCACAACTGGGCGCCCCGCCACGACATGTGGGTACGTTTCCGTGCCTACGAAGCAACCCGT
GACCTGGATGCCTGTGCTCTTGTGCGCAGCCATCGCAGGCGACTCTTAAGACGCCTCAGCCCCT
CACATAGTGTAGCTCAGTGCCTTCGTGACCTAGTGGCCATGCAATGGGCAGATGCAACTGGAGA
GGCAGCCTCAGAGGGTGTTAATGGCGACCGAGTGTTGTTGGAGAGTGAACCCAGGAATAGGGCA
AGGATGGAGAAAGAGAAGGGGAGGGGCACAGAGACCAGCCACTGTGGAAGGCCTCATCGAGAGA
GTGAGAAAGGGAGGCGACTGCACTTGAGAGATGGTCAAGGAGTCTGGTTGGAGAATCAGAAGGT
GAGGGGTCGTGAAGGGACAGGAGCCCAGCTGGAAAAAGAGCTTTTGAGAGAGCCAGAGGTCAGA
GACTGGAGGGGAACCCAGATAGAGAATAGGGTAAGGGTGCTGGGGCCCATAGATCGGAGAGGCA
ACCTGGTTGAGTCTGAGAATGCCAAGAGTCTTGAAGGAAGGCCCTGGAGAGACGTACAGTTGCA
GGAGGAGAGGGCACGTGCACCAAAACCTCAAGACTGGAAAGAGCCTCCGTTTGAAATAGAGAAG
GGGATCGACGTTAGAAAGTGGAGGGAGGTCCATGTGGAGAAGCCCTTAGAGTTAGTCCCCAAGA
ACGGAGATCAGAGGGGAGCTGAGGGGCAGAAAGGGCCGGAGACTGCAGAGGAGAGAAGTGGGAG
GTTTCTAGTCAAAAGGAGGCGGGGCCTGGAGGACATTGTTGTTGTTCATTTAGAGGACGCAAGA
GCAACAGGCATAGTAAATGGAGATGGCAGGGGACCCCAACCTGTGAGTTTCAAGAATGGAGGAC
AGCAGGTGGAGTTTGGGGACCCTGGGGGGAGGCTTCTAGGGATGGGGAATGGTGTACCATGCAC
CACCCCTGTGCAAACTGTGTTGAAAGGCAATCCAGAATGGGCAGTGAACAGGGTTGAGTCCCTG
GCTGCAGGGGAGGCAGTACAGGGAGGAAGTGAAGAAGGCCCAGGGGAACCAAAGAGACTTTGCC
TCCCCTGTAGAGATGAGGGAGTGGACTGTGAGCTACTAGCCAAGTTCCGAGCAGCCTGTGGGCC
AGAGTTGGCAGATCTAGTGGCAGAGGAGCTAGCCTTCGCTAGGCAACATGGGACCCGAGGTTTC
CACTGGACCGGAGCTGGCTTTGCCCTTAAGGATGGCACCTCAGACTTCTTCCTGGATGGGGCCC
TGACACACTGCAGCTGCTCAATCTATGCTGCCAGATGCCTGCCCTGCAGACACCTCTTTGCTGC
ACGTCTCCTCACAGGGGCAGCCTTGTTCCACATGGACCTGCTCAGAGATTGCTGGGGAAGATCT
CAGGAGCCCTGACCCTGTGTACCCCTGCTTGCTGCCCTCCACATGGAGGGCAAGAACATAGTCT
TTGATCCCAAAGATAATAGGGTTTATGCCCTGCCCGGTGGGTCACCCGAGCACTTCTAATCACC
TCCTGAGTCATCTAAAGACCTCCTCTGGCCTTCTTTCTCTACATCCTAGGGAATGCTGGCTATT
ATCTCTGAGATCCTGGAGCCACACCTGGGGAAGTGCTAATGGCCAGGACATATCGAAAGGACAT
TGCCCTGGAAAATAAATGAGGAAACGAAGAGGTTATGAGAGACAGGGTCAGCCAAGAAAGGGAT
AGAGCTGGAGCAGGGGGATGCACAGAGGAGGTCATGGAAAGAAGCTAAGCTATGGGGACTGACA
AGAGTAAGGATGGAGAGCCCTAGAGACTACAAGGTTGAAATGGGAAAAGCCAGGAAGAATGAGC
AAAACTGGAGAAAGGATAGGAGGGAGACAAGAGATAGGGCTGGGGAAGTGAAGCATGGAAGGAG
AGAGGGTGAGAAGGGGTGAAGACAGTTTTTAAAGGGAGATGACAAAGCAGAGGAAGACAGAAGA
TGATAGGATGACCTGGGGAGTTGGCCATTTCTCAGGGTGGTGCGGGGGAGATGGCTCTCTGGTG
GGACAACCTGCATACTGCCTCAGAGGGAAGGGAACTAAGTGAACAGCTGTACTTTTAGATTGAA
ATAAACAGCATTATTTTGAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_796286	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH75681	(Get FASTA)	NCBI Sequence Viewer
	BAB31091	(Get FASTA)	NCBI Sequence Viewer
	BAE21424	(Get FASTA)	NCBI Sequence Viewer
	BAE35600	(Get FASTA)	NCBI Sequence Viewer
	BAE37016	(Get FASTA)	NCBI Sequence Viewer
	EDL38063	(Get FASTA)	NCBI Sequence Viewer
	EDL38064	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000104172
	ENSMUSP00000104172.5
	ENSMUSP00000112652.4
	ENSMUSP00000112825.2
	ENSMUSP00000122300.2
GenBank Protein	Q6DI92	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_796286 ⟸ NM_177312

- UniProtKB:

A0A0R4J1C4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MELTEPLPSAAVQKEEQELLDRTFFSWAEFSRFFDKWCQQRLVVFSVKSSTRVARSPWANTPPL
YRLIHVLKYSYVLLVCKDVRMPNKSTAWPPQPSCPAFITVKLSPLRDRLVVTECQLTHSHPACP
REFAYHFRPGHLLANSCLPVRITNQISKQFVAPADVRRLLTHCKGPDHGVLDALQVLEGLFRTD
PEAKVKLVFVEDQAMVETVFLLTSRTRALLRRFPRILLVDRLPGLQGTLDLMAVLCVDSAGRAR
QAACCVARPGTPSLLRFMLVSLLQSAPDVKGRVRCLTAGPEVAGQLRAVRQLLPCARVQICRAQ
GLETLFSKAQELGGASQEDPDLWPLLCRLADSKSYTAYSEALAELRSQAPTAFIRYFEHNWAPR
HDMWVRFRAYEATRDLDACALVRSHRRRLLRRLSPSHSVAQCLRDLVAMQWADATGEAASEGVN
GDRVLLESEPRNRARMEKEKGRGTETSHCGRPHRESEKGRRLHLRDGQGVWLENQKVRGREGTG
AQLEKELLREPEVRDWRGTQIENRVRVLGPIDRRGNLVESENAKSLEGRPWRDVQLQEERARAP
KPQDWKEPPFEIEKGIDVRKWREVHVEKPLELVPKNGDQRGAEGQKGPETAEERSGRFLVKRRR
GLEDIVVVHLEDARATGIVNGDGRGPQPVSFKNGGQQVEFGDPGGRLLGMGNGVPCTTPVQTVL
KGNPEWAVNRVESLAAGEAVQGGSEEGPGEPKRLCLPCRDEGVDCELLAKFRAACGPELADLVA
EELAFARQHGTRGFHWTGAGFALKDGTSDFFLDGALTHCSCSIYAARCLPCRHLFAARLLTGAA
LFHMDLLRDCWGRSQEP

hide sequence

RefSeq Acc Id:

ENSMUSP00000122300 ⟸ ENSMUST00000144470

RefSeq Acc Id:

ENSMUSP00000112825 ⟸ ENSMUST00000119558

RefSeq Acc Id:

ENSMUSP00000112652 ⟸ ENSMUST00000119139

RefSeq Acc Id:

ENSMUSP00000104172 ⟸ ENSMUST00000108532

Protein Domains

DUF5575 SWIM-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6DI92-F1-model_v2	AlphaFold	Q6DI92	1-447	view protein structure

Promoters

RGD ID:

6891854

Promoter ID:

EPDNEW_M9378

Type:

multiple initiation site

Name:

Zswim9_2

Description:

Mus musculus zinc finger SWIM-type containing 9 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M9379

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	7	13,278,422 - 13,278,482	EPDNEW

RGD ID:

6891856

Promoter ID:

EPDNEW_M9379

Type:

multiple initiation site

Name:

Zswim9_1

Description:

Mus musculus zinc finger SWIM-type containing 9 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M9378

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	7	13,278,693 - 13,278,753	EPDNEW

RGD ID:

6840305

Promoter ID:

MM_KWN:48781

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Lung, MEF_B4, MEF_B6

Transcripts:

ENSMUST00000108532, ENSMUST00000119139, ENSMUST00000119558, NM_177312, NM_177312_6330408A02RIK, OTTMUST00000075731, OTTMUST00000075732, UC009FFN.1, UC009FFO.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	7	13,863,634 - 13,864,134 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:2447816	AgrOrtholog
Ensembl Genes	ENSMUSG00000070814	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000108532	ENTREZGENE
	ENSMUST00000108532.11	UniProtKB/TrEMBL
	ENSMUST00000119139.10	UniProtKB/TrEMBL
	ENSMUST00000119558.9	UniProtKB/TrEMBL
	ENSMUST00000144470.2	UniProtKB/TrEMBL
InterPro	DUF5575	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	DUF5575_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	DUF5575_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_SWIM	UniProtKB/TrEMBL
	ZSWIM9_RNaseH-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:321008	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:2447816	ENTREZGENE
NCBI Gene	321008	ENTREZGENE
PANTHER	PTHR47086	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZINC FINGER SWIM-TYPE-CONTAINING 9	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	DUF5575	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	DUF5575_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	DUF5575_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Zswim9	PhenoGen
PROSITE	ZF_SWIM	UniProtKB/TrEMBL
UniProt	A0A0R4J1C4	ENTREZGENE, UniProtKB/TrEMBL
	D3YTW6_MOUSE	UniProtKB/TrEMBL
	D3Z6U3_MOUSE	UniProtKB/TrEMBL
	Q6DI92	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	Q3TRL3	UniProtKB/Swiss-Prot
	Q3V0S9	UniProtKB/Swiss-Prot
	Q9D3B2	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-08-22	Zswim9	zinc finger SWIM-type containing 9	6330408A02Rik	RIKEN cDNA 6330408A02 gene	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD