Zfp61 (zinc finger protein 61) - Rat Genome Database

Name: Zfp61
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Zfp61 (zinc finger protein 61) Mus musculus

Analyze

Symbol:

Zfp61

Name:

zinc finger protein 61

RGD ID:

1558149

MGI Page

MGI

Description:

Is expressed in central nervous system and genitourinary system. Orthologous to human ZNF226 (zinc finger protein 226).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

zinc finger protein 155

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	23,990,470 - 24,003,273 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	23,990,464 - 24,000,657 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	24,291,045 - 24,303,840 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	24,291,039 - 24,301,232 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	25,076,065 - 25,084,568 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	23,999,806 - 24,008,350 (-)	NCBI		MGSCv36	mm8
Celera	7	18,913,976 - 18,922,478 (-)	NCBI		Celera
Cytogenetic Map	7	A3	NCBI
cM Map	7	10.27	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

ethylmalonic encephalopathy (ISO)

genetic disease (ISO)

schizophrenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (ISO)

acrylamide (ISO)

amitrole (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (EXP,ISO)

bis(2-chloroethyl) sulfide (EXP)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

chloroprene (ISO)

choline (EXP)

copper atom (ISO)

copper(0) (ISO)

dibutyl phthalate (EXP,ISO)

dorsomorphin (ISO)

entinostat (ISO)

folic acid (EXP)

gentamycin (ISO)

ketamine (ISO)

L-methionine (EXP)

lead(0) (ISO)

methimazole (ISO)

methotrexate (ISO)

nitrofen (ISO)

paracetamol (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (EXP)

sulfadimethoxine (ISO)

sunitinib (ISO)

temozolomide (ISO)

titanium dioxide (ISO)

trichloroethene (ISO)

triptonide (EXP)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

zinc sulfate (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

enlarged cecum (IEA)

increased circulating calcium level (IEA)

increased circulating creatinine level (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Mouse brain organization revealed through direct genome-scale TF expression analysis.	Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2.	MGDs mouse GO annotations	MGD data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:7590745	PMID:7959006	PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:14610273	PMID:16141072	PMID:16141073
PMID:18287559	PMID:20059953	PMID:21873635	PMID:22988430

Genomics

Comparative Map Data

Zfp61
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	23,990,470 - 24,003,273 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	23,990,464 - 24,000,657 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	24,291,045 - 24,303,840 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	24,291,039 - 24,301,232 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	25,076,065 - 25,084,568 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	23,999,806 - 24,008,350 (-)	NCBI		MGSCv36	mm8
Celera	7	18,913,976 - 18,922,478 (-)	NCBI		Celera
Cytogenetic Map	7	A3	NCBI
cM Map	7	10.27	NCBI

ZNF233
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	44,259,886 - 44,275,317 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	44,259,880 - 44,275,317 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	44,764,039 - 44,779,470 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	49,455,916 - 49,471,308 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	49,455,915 - 49,471,308	NCBI
Celera	19	41,568,152 - 41,583,542 (+)	NCBI		Celera
Cytogenetic Map	19	q13.31	NCBI
HuRef	19	41,196,129 - 41,211,392 (+)	NCBI		HuRef
CHM1_1	19	44,765,827 - 44,781,262 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	47,082,752 - 47,098,164 (+)	NCBI		T2T-CHM13v2.0

Znf235-ps1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	88,927,669 - 88,936,387 (+)	NCBI		GRCr8
mRatBN7.2	1	79,799,766 - 79,808,543 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	79,799,769 - 79,808,465 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	1	81,072,880 - 81,081,258 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	1	82,336,423 - 82,363,800 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	79,455,888 - 79,462,778 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	74,254,805 - 74,263,183 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

ZNF233
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	50,406,438 - 50,441,208 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	52,287,146 - 52,313,335 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	41,214,920 - 41,229,897 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	49,821,295 - 49,836,128 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	49,825,799 - 49,836,128 (+)	Ensembl	panpan1.1		panPan2

ZNF233
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666073	17,292,532 - 17,305,742 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in Zfp61
417 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	986
Count of miRNA genes:	582
Interacting mature miRNAs:	694
Transcripts:	ENSMUST00000077780, ENSMUST00000128421, ENSMUST00000137342, ENSMUST00000138619, ENSMUST00000138924, ENSMUST00000139811, ENSMUST00000145131, ENSMUST00000165241
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301572	Sluc30_m	susceptibility to lung cancer 30 (mouse)			Not determined		7	2431696	36431844	Mouse
1301115	Lrdm1_m	lymphoproliferation (Fas) renal disease modifier 1 (mouse)			Not determined		7	3352048	24879418	Mouse
1300722	Sle3_m	systemic lupus erythmatosus susceptibility 3 (mouse)			Not determined		7	3511728	87142720	Mouse
38501068	Tip1_m	tuberculosis immunophenotype 1, spleen CFU (mouse)					7	3602999	72549748	Mouse
25314307	Mlh1fc2_m	MLH1 foci count 2 (mouse)					7	6502999	133501729	Mouse
12792978	Fbmd3_m	femoral bone mineral density 3, females only (mouse)					7	7050288	142367832	Mouse
1357699	Nhdlq6_m	non-HDL QTL 6 (mouse)			Not determined		7	9988867	43988984	Mouse
1558893	Spir1_m	Streptococcus pneumoniae infection resistance 1 (mouse)			Not determined		7	10305798	44305936	Mouse
10449139	Eosn1_m	eosinophil differential 1 (mouse)					7	12480877	46480877	Mouse
10449158	Eosn3_m	eosinophil differential 3 (mouse)					7	12480877	46480877	Mouse
4141566	Femwf8_m	femur work to failure 8 (mouse)			Not determined			13032485	47032621	Mouse
11522751	Cocia17_m	cocaine-induced activity, QTL 17 (mouse)					7	13135204	47135204	Mouse
25314314	Sccor1_m	synaptonemal complex length to mean MLH1 count ratio 1 (mouse)					7	13333925	47349748	Mouse
1559016	Drsi_m	DCC-related Spp1 induction (mouse)			Not determined		7	16637293	49159331	Mouse
1301041	Prnr2_m	prion resistance 2 (mouse)			Not determined		7	18728794	39674033	Mouse
10412199	Sst2_m	susceptibility to tuberculosis 2 (mouse)			Not determined		7	18728794	119485380	Mouse
1301158	Eae4_m	susceptibility to experimental allergic encephalomyelitis 4 (mouse)			Not determined		7	19147398	141919804	Mouse
1301622	Eae12_m	susceptibility to experimental allergic encephalomyelitis 12 (mouse)			Not determined		7	19280015	53280104	Mouse
1301052	Bhr6_m	bronchial hyperresponsiveness 6 (mouse)			Not determined		7	19842250	53842367	Mouse
12904742	Litsq2_m	litter size QTL 2 (mouse)					7	22673887	56674033	Mouse
1301709	Bdt4_m	bone density traits 4 (mouse)			Not determined		7	22888572	56888716	Mouse
11354952	Pdcc1_m	plasmacytoid dentritic cell compartment 1 (mouse)					7	23066531	57066531	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_009561	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030242398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC159140	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK148158	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK149960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK163086	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC006618	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY271078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY420227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466593	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000077780 ⟹ ENSMUSP00000076954

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	23,990,464 - 23,999,100 (-)	Ensembl
GRCm38.p6 Ensembl	7	24,291,039 - 24,299,675 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000128421

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	23,997,054 - 24,000,657 (-)	Ensembl
GRCm38.p6 Ensembl	7	24,297,629 - 24,301,232 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000137342

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	23,992,786 - 23,994,973 (-)	Ensembl
GRCm38.p6 Ensembl	7	24,293,361 - 24,295,548 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000138619

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	23,994,496 - 23,998,723 (-)	Ensembl
GRCm38.p6 Ensembl	7	24,295,071 - 24,299,298 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000138924

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	23,991,444 - 23,995,136 (-)	Ensembl
GRCm38.p6 Ensembl	7	24,292,019 - 24,295,711 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000139811

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	23,994,739 - 23,998,826 (-)	Ensembl
GRCm38.p6 Ensembl	7	24,295,314 - 24,299,401 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000145131 ⟹ ENSMUSP00000117077

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	23,991,587 - 23,998,735 (-)	Ensembl
GRCm38.p6 Ensembl	7	24,292,162 - 24,299,310 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000165241 ⟹ ENSMUSP00000132551

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	23,990,482 - 23,995,406 (-)	Ensembl
GRCm38.p6 Ensembl	7	24,291,057 - 24,295,981 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000206535

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	23,997,521 - 23,999,062 (-)	Ensembl
GRCm38.p6 Ensembl	7	24,298,096 - 24,299,637 (-)	Ensembl

RefSeq Acc Id:

NM_009561 ⟹ NP_033587

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	7	23,990,471 - 23,998,974 (-)	NCBI
GRCm38	7	24,291,046 - 24,299,549 (-)	NCBI
MGSCv37	7	25,076,065 - 25,084,568 (-)	RGD
Celera	7	18,913,976 - 18,922,478 (-)	RGD
cM Map	7		ENTREZGENE

Sequence:

show sequence

TAAGGCAGACATCCTCCAATGTAAAGACGTTGCTGTCCAAGACTTTCTTAGGGAGTATGGGAAA
TGAAAAACAACAGGGAAATCCAATACGGGAGGATGGTGCTCCTCCCCTAGCTTCGGGACCGGCC
ACCCGCGCCTCTGCATCCTCACTTCCGTTACCACTGAGGGAGCCGAGCGTCACGCACGGTTTCT
CCACGCGGAATTCTGGGAACTCGTCGGCTTCAGGCTAGCCTGTAGCCATCTGTCCCCCTGGATT
TGAGTTATTTTAGCCAGGAACCTCCAGAATGACCCGCTAGATGCTTCTGAGATCGACAGCAATT
GCGTCTCGGGTGAAAAGGAAGGAGCGAGGTTTGAAAGCCCTGACTTCCCAAAAAGCAGTGCTGG
AAGCCATAAGTGACTAAGATTGGCTGACGCTGGAGGATGTGTGGGTCGTACACCTGGGATTAAC
TTTTATTAGAGGGGTGGAAAACGTGAGTTGCGGTGTGGGTGTGGCGATTAGAAGACCACGCTGG
GGAGATGCTGCCCATCTACCATCCTGTGTATCCTGAGGACCAAACTCGGGCTTGGTGGTAAAAG
CTTTTATCCACCAAATCCTCCCTCGTGGACTTCGAGATTGCCTAATTAGGTCTGCACCTCCTGG
AAGGAAGGGTAAAAAAGTGAGCGGGCCCATGGAGGCAGTAACATTCAAGGATGTGGCTGTGGTC
TTCACTAAGGAGGAATTCAGGCTGCTGGACTCCGCCCAGAGGACGCTGTACCAAGATGTGATGG
TTGAGAATTTTCGGAACCTGCTCTCAGTGGAGTATCAACTTTTCAAACGAGATAAACCATACCT
GGAAAGAGAAGAGAAGCCTCAAATGAGGAGGGCAGCCCCGAGGGAGAGAGATTCAGGGATTAAC
GGTCAGAGTGCGAGAGGAGCAGTCCGAGGGAGAGGGTCACCTGAAGCCCTTCCCTGCTGGCAAA
TCTGGCAGTGGGTCACGGACGACTTAACCACGAGTCAAAACTCTGTGGTAAATACTCCTCAGCT
ACAGGGCAAGGCTCCCTGCCAGTCCAGGCCAAGGCCATCTGCTCCCGTTTCTGTAGATGAGAAC
TATATAAAGAGTCATACAATAAGTGTTCCCATCCACTCCGGAAGGCCCCCACTTCCCACTTTGA
GAGCCCAGGGAACTTCCCTGACTGAGCGGCAGACTCGGAAGGATCAGTACCACCAAGGCTCCCA
CAGAGATGAAGCGGGTCAGAGGAAACGGGATGCTCACCCTACAAGTTGGATTCCACGTCCCCGC
TCTGATCACAGAGTATGCAAAAGTAAGGGGCGGTGTAGCCCCAGTGATCATGGGAGAGACGGGG
TGGAAGTGGTGCCATTCGACCAGAATGGAGGGATTCACACTAGACAGAAAAGCTCCCAACACAG
AGAAGCCGTTACCGATCTCTCCAGCTCGGATCCTCACCAAGTGTTAGACTCAGGAGGGAGGGCT
TGTGCATGTGTTGAATGTGGGAGAGGCTCCCCTTGTGGCACAGATGGCTGCATTCATCAAGGAG
GTCGCACAGGAGAAGAACGGAAGGAATTCGGTCACCAGAGGGTCTGCACGCCAGTGAAACCGTA
CACCTGTGAGCAGTGCGGAAAAGTCTTTACTTGTAGATCAGCACTTAATGTCCACGTGAAAGTG
CACACGAGGGAGAGACCTTACAATTGTGAGACCTGCGGGAGTGCCTTCAGCCAGGCCTCCCACC
TCCAGGACCACCAGAGGCTCCACACTGGGGAGAAGCCGTTCAAATGCGATGCCTGCGGCAAGAG
TTTCAGTCGCAGTTCCCACCTGCGGTCCCACCAGAGGGTCCACACGGGAGAGAAACCATACAAG
TGCGGGGAGTGTGGGAAGAGCTTCATTTGTAGCTCCAATCTCTACATCCATCAGCGAGTCCACA
CAGGAGAAAAGCCCTATAAATGCGTGGACTGCGGGAAAGAATTCAGTCGCCCTTCGAGTCTTCA
GGCCCATCAGGGCATTCACACCGGAGAGAAATCATACGTTTGTACTATGTGTGGGAAAGGCTAT
ACTCTGAATTCAAATCTCCAAGTCCACTTGAGAGTCCACACGGGGGAGAAGCCGTACAGTTGTG
ACGTGTGTGGGAAAGGCTTCAGTCGCTCTTCACAGCTACAGTCCCATCAGAGAGTCCACACGGG
GGAGAAGCCTTACAAGTGTGATGTGTGTGGTAAGAGCTTTGGTTGGCGGTCAAATCTTATAATT
CATCACAGAATCCACAGCAGTGGTAAACCTTACAAGAGCAAGAGAGATGATAAAAACATCAAGG
AGTCCACTCAGGAAAAATGTTCTATAAAATAGTGCTTGAAAAG

hide sequence

RefSeq Acc Id:

XM_030242398 ⟹ XP_030098258

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	7	23,990,470 - 24,003,273 (-)	NCBI
GRCm38	7	24,291,045 - 24,303,840 (-)	NCBI

Sequence:

show sequence

GTCTCTTGAGGAAGTGGGATTGAGGCACCTGTCACATGAGGCGCTTTTCTGCTCACAAATCTGG
CAGCAGTGCTCGAGGACGCCACGAGAGAGCGACGGGTCCTCCGGAGCTGGAGCAACTACGGTTT
TGAGCTCCGCAGTTAGTAGCGCTCTCCGCACCACGTCATCTCTCCAGCGCCAAAGCCTATACGT
CCTAAGGCAGACATCCTCCAATGTAAAGACGTTGCTGTCCAAGACTTTCTTAGGGAGTATGGGA
AATGAAAAACAACAGGGAAATCCAATACGGGAGGATGGTGCTCCTCCCCTAGCTTCGGGACCGG
CCACCCGCGCCTCTGCATCCTCACTTCCGTTACCACTGAGGGAGCCGAGCGTCACGCACGGTTT
CTCCACGCGGAATTCTGGGAACTCGTCGGCTTCAGGCTAGCCTGTAGCCATCTGTCCCCCTGGA
TTTGAGTTATTTTAGCCAGGAACCTCCAGAATGACCCGCTAGATGCTTCTGAGATCGACAGCAA
TTGCGTCTCGGGTGAAAAGGAAGGAGCGAGGTTTGAAAGCCCTGACTTCCCAAAAAGCAGTGCT
GGAAGCCATAAGTGACTAAGATTGGCTGACGCTGGAGGATGTGTGGGTCGTACACCTGGGATTA
ACTTTTATTAGAGGGGTGGAAAACGTGAGTTGCGGTGTGGGTGTGGCGATTAGAAGACCACGCT
GGGGAGATGCTGCCCATCTACCATCCTGTGTATCCTGAGGACCAAACTCGGGCTTGGTGGTAAA
AGCTTTTATCCACCAAATCCTCCCTCGTGGACTTCGAGATTGCCTAATTAGGTCTGCACCTCCT
GGAAGGAAGGGTAAAAAAGTGAGCGGGCCCATGGAGGCAGTAACATTCAAGGATGTGGCTGTGG
TCTTCACTAAGGAGGAATTCAGGCTGCTGGACTCCGCCCAGAGGACGCTGTACCAAGATGTGAT
GGTTGAGAATTTTCGGAACCTGCTCTCAGTGGAGTATCAACTTTTCAAACGAGATAAACCATAC
CTGGAAAGAGAAGAGAAGCCTCAAATGAGGAGGGCAGCCCCGAGGGAGAGAGATTCAGGGATTA
ACGGTCAGAGTGCGAGAGGAGCAGTCCGAGGGAGAGGGTCACCTGAAGCCCTTCCCTGCTGGCA
AATCTGGCAGTGGGTCACGGACGACTTAACCACGAGTCAAAACTCTGTGGTAAATACTCCTCAG
CTACAGGGCAAGGCTCCCTGCCAGTCCAGGCCAAGGCCATCTGCTCCCGTTTCTGTAGATGAGA
ACTATATAAAGAGTCATACAATAAGTGTTCCCATCCACTCCGGAAGGCCCCCACTTCCCACTTT
GAGAGCCCAGGGAACTTCCCTGACTGAGCGGCAGACTCGGAAGGATCAGTACCACCAAGGCTCC
CACAGAGATGAAGCGGGTCAGAGGAAACGGGATGCTCACCCTACAAGTTGGATTCCACGTCCCC
GCTCTGATCACAGAGTATGCAAAAGTAAGGGGCGGTGTAGCCCCAGTGATCATGGGAGAGACGG
GGTGGAAGTGGTGCCATTCGACCAGAATGGAGGGATTCACACTAGACAGAAAAGCTCCCAACAC
AGAGAAGCCGTTACCGATCTCTCCAGCTCGGATCCTCACCAAGTGTTAGACTCAGGAGGGAGGG
CTTGTGCATGTGTTGAATGTGGGAGAGGCTCCCCTTGTGGCACAGATGGCTGCATTCATCAAGG
AGGTCGCACAGGAGAAGAACGGAAGGAATTCGGTCACCAGAGGGTCTGCACGCCAGTGAAACCG
TACACCTGTGAGCAGTGCGGAAAAGTCTTTACTTGTAGATCAGCACTTAATGTCCACGTGAAAG
TGCACACGAGGGAGAGACCTTACAATTGTGAGACCTGCGGGAGTGCCTTCAGCCAGGCCTCCCA
CCTCCAGGACCACCAGAGGCTCCACACTGGGGAGAAGCCGTTCAAATGCGATGCCTGCGGCAAG
AGTTTCAGTCGCAGTTCCCACCTGCGGTCCCACCAGAGGGTCCACACGGGAGAGAAACCATACA
AGTGCGGGGAGTGTGGGAAGAGCTTCATTTGTAGCTCCAATCTCTACATCCATCAGCGAGTCCA
CACAGGAGAAAAGCCCTATAAATGCGTGGACTGCGGGAAAGAATTCAGTCGCCCTTCGAGTCTT
CAGGCCCATCAGGGCATTCACACCGGAGAGAAATCATACGTTTGTACTATGTGTGGGAAAGGCT
ATACTCTGAATTCAAATCTCCAAGTCCACTTGAGAGTCCACACGGGGGAGAAGCCGTACAGTTG
TGACGTGTGTGGGAAAGGCTTCAGTCGCTCTTCACAGCTACAGTCCCATCAGAGAGTCCACACG
GGGGAGAAGCCTTACAAGTGTGATGTGTGTGGTAAGAGCTTTGGTTGGCGGTCAAATCTTATAA
TTCATCACAGAATCCACAGCAGTGGTAAACCTTACAAGAGCAAGAGAGATGATAAAAACATCAA
GGAGTCCACTCAGGAAAAATGTTCTATAAAATAGTGCTTGAAAAGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_033587	(Get FASTA)	NCBI Sequence Viewer
	XP_030098258	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH06618	(Get FASTA)	NCBI Sequence Viewer
	BAE28383	(Get FASTA)	NCBI Sequence Viewer
	BAE29195	(Get FASTA)	NCBI Sequence Viewer
	EDL24347	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000076954
	ENSMUSP00000076954.8
	ENSMUSP00000117077.2
	ENSMUSP00000132551.2

RefSeq Acc Id:

NP_033587 ⟸ NM_009561

- UniProtKB:

Q923D1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEAVTFKDVAVVFTKEEFRLLDSAQRTLYQDVMVENFRNLLSVEYQLFKRDKPYLEREEKPQMR
RAAPRERDSGINGQSARGAVRGRGSPEALPCWQIWQWVTDDLTTSQNSVVNTPQLQGKAPCQSR
PRPSAPVSVDENYIKSHTISVPIHSGRPPLPTLRAQGTSLTERQTRKDQYHQGSHRDEAGQRKR
DAHPTSWIPRPRSDHRVCKSKGRCSPSDHGRDGVEVVPFDQNGGIHTRQKSSQHREAVTDLSSS
DPHQVLDSGGRACACVECGRGSPCGTDGCIHQGGRTGEERKEFGHQRVCTPVKPYTCEQCGKVF
TCRSALNVHVKVHTRERPYNCETCGSAFSQASHLQDHQRLHTGEKPFKCDACGKSFSRSSHLRS
HQRVHTGEKPYKCGECGKSFICSSNLYIHQRVHTGEKPYKCVDCGKEFSRPSSLQAHQGIHTGE
KSYVCTMCGKGYTLNSNLQVHLRVHTGEKPYSCDVCGKGFSRSSQLQSHQRVHTGEKPYKCDVC
GKSFGWRSNLIIHHRIHSSGKPYKSKRDDKNIKESTQEKCSIK

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RefSeq Acc Id:	XP_030098258 ⟸ XM_030242398
- Peptide Label:	isoform X1
- UniProtKB:	Q923D1 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSMUSP00000117077 ⟸ ENSMUST00000145131

RefSeq Acc Id:

ENSMUSP00000132551 ⟸ ENSMUST00000165241

RefSeq Acc Id:

ENSMUSP00000076954 ⟸ ENSMUST00000077780

Protein Domains

C2H2-type KRAB

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q923D1-F1-model_v2	AlphaFold	Q923D1	1-555	view protein structure

Promoters

RGD ID:

6892168

Promoter ID:

EPDNEW_M9535

Type:

initiation region

Name:

Zfp61_1

Description:

Mus musculus zinc finger protein 61 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	7	24,299,574 - 24,299,634	EPDNEW

RGD ID:

6842417

Promoter ID:

MM_KWN:49352

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Brain, Kidney

Transcripts:

ENSMUST00000086003

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	7	25,076,519 - 25,077,019 (-)	MPROMDB

RGD ID:

6842415

Promoter ID:

MM_KWN:49353

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Brain

Transcripts:

OTTMUST00000053401, OTTMUST00000083862

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	7	25,080,811 - 25,081,311 (-)	MPROMDB

RGD ID:

6842416

Promoter ID:

MM_KWN:49354

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, MEF_B4, MEF_B6

Transcripts:

OTTMUST00000053396, OTTMUST00000053397, OTTMUST00000053398, OTTMUST00000053399

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	7	25,084,191 - 25,084,691 (-)	MPROMDB

RGD ID:

6842418

Promoter ID:

MM_KWN:49355

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, Brain, MEF_B4, MEF_B6

Transcripts:

OTTMUST00000083861

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	7	25,085,649 - 25,086,149 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:99663	AgrOrtholog
Ensembl Genes	ENSMUSG00000050605	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000077780	ENTREZGENE
	ENSMUST00000077780.14	UniProtKB/TrEMBL
	ENSMUST00000145131.8	UniProtKB/TrEMBL
	ENSMUST00000165241.8	UniProtKB/TrEMBL
Gene3D-CATH	6.10.140.140	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	KRAB_dom_sf	UniProtKB/TrEMBL
	Krueppel-associated_box	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	mmu:22719	UniProtKB/TrEMBL
MGD	MGI:99663	ENTREZGENE
NCBI Gene	22719	ENTREZGENE
PANTHER	FI01424P-RELATED	UniProtKB/TrEMBL
	GENE 10130-RELATED	UniProtKB/TrEMBL
	KRAB DOMAIN C2H2 ZINC FINGER	UniProtKB/TrEMBL
	KRAB DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER AND SCAN DOMAIN-CONTAINING	UniProtKB/TrEMBL
	ZNF44 PROTEIN	UniProtKB/TrEMBL
Pfam	KRAB	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
	zf-C2H2_4	UniProtKB/TrEMBL
PhenoGen	Zfp61	PhenoGen
PROSITE	KRAB	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	KRAB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	Krueppel-associated_box	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	D3Z6B8_MOUSE	UniProtKB/TrEMBL
	Q3UG26_MOUSE	UniProtKB/TrEMBL
	Q62518_MOUSE	UniProtKB/TrEMBL
	Q923D1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Mammalian Phenotype