Bsph1 (binder of sperm protein homolog 1) - Rat Genome Database

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Gene: Bsph1 (binder of sperm protein homolog 1) Mus musculus
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Symbol: Bsph1
Name: binder of sperm protein homolog 1
RGD ID: 1621967
MGI Page MGI
Description: Exhibits heparin binding activity. Involved in sperm capacitation. Localizes to cell surface. Orthologous to human BSPH1 (binder of sperm protein homolog 1).
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: bovine seminal plasma protein homolog 1; bovine seminal plasma protein-like 1; Gm767
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39713,184,766 - 13,207,375 (+)NCBIGRCm39mm39
GRCm39 Ensembl713,184,766 - 13,207,374 (+)Ensembl
GRCm38713,450,841 - 13,473,450 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl713,450,841 - 13,473,449 (+)EnsemblGRCm38mm10GRCm38
MGSCv37714,036,190 - 14,058,798 (+)NCBIGRCm37mm9NCBIm37
MGSCv36712,351,020 - 12,373,628 (+)NCBImm8
Celera711,068,322 - 11,090,376 (+)NCBICelera
Cytogenetic Map7A1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function
heparin binding  (IBA,IDA)

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:17085770   PMID:17307309   PMID:18923155   PMID:19091820  
PMID:21873635   PMID:22539676   PMID:32253033   PMID:32488144  


Genomics

Comparative Map Data
Bsph1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39713,184,766 - 13,207,375 (+)NCBIGRCm39mm39
GRCm39 Ensembl713,184,766 - 13,207,374 (+)Ensembl
GRCm38713,450,841 - 13,473,450 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl713,450,841 - 13,473,449 (+)EnsemblGRCm38mm10GRCm38
MGSCv37714,036,190 - 14,058,798 (+)NCBIGRCm37mm9NCBIm37
MGSCv36712,351,020 - 12,373,628 (+)NCBImm8
Celera711,068,322 - 11,090,376 (+)NCBICelera
Cytogenetic Map7A1NCBI
BSPH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1947,968,046 - 47,992,170 (-)EnsemblGRCh38hg38GRCh38
GRCh381947,967,258 - 47,992,170 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371948,471,303 - 48,495,427 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361953,163,115 - 53,187,239 (-)NCBINCBI36hg18NCBI36
Celera1945,336,802 - 45,361,003 (-)NCBI
Cytogenetic Map19q13.33NCBI
HuRef1944,853,535 - 44,877,476 (-)NCBIHuRef
CHM1_11948,473,221 - 48,497,337 (-)NCBICHM1_1
Bsph1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2174,413,976 - 74,450,117 (+)NCBI
Rnor_6.0 Ensembl175,748,916 - 75,789,785 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0175,705,172 - 75,793,950 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0177,033,418 - 77,094,538 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4174,045,645 - 74,084,661 (+)NCBIRGSC3.4rn4RGSC3.4
Celera169,843,118 - 69,942,551 (+)NCBICelera
Cytogenetic Map1q21NCBI
Bsph1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955609261,937 - 266,866 (+)NCBIChiLan1.0ChiLan1.0
BSPH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11953,559,937 - 53,583,726 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1953,559,937 - 53,583,726 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01944,907,826 - 44,933,116 (-)NCBIMhudiblu_PPA_v0panPan3
BSPH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11108,187,315 - 108,207,096 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1107,670,110 - 107,689,899 (+)NCBI
ROS_Cfam_1.01108,713,160 - 108,732,137 (+)NCBI
UMICH_Zoey_3.11108,382,792 - 108,402,323 (+)NCBI
UNSW_CanFamBas_1.01108,026,079 - 108,045,637 (+)NCBI
UU_Cfam_GSD_1.01108,893,963 - 108,912,977 (+)NCBI
LOC101963272
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934920,161,472 - 20,171,703 (+)NCBI
SpeTri2.0NW_0049366641,779,662 - 1,789,727 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BSPH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl653,566,517 - 53,569,308 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1653,566,334 - 53,570,282 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2649,149,649 - 49,164,791 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BSPH1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1641,234,737 - 41,253,039 (-)NCBI
Bsph1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248325,823,293 - 5,836,540 (+)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301377Mprf_mmaternal performance (mouse)Not determined7120266693Mouse
10043984Pbft4_mpercent body fat 4 (mouse)Not determined7120266693Mouse
1301177Vent3_mventricular size 3 (mouse)Not determined7120463409Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120463409Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121695147Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121818048Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121818048Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121818048Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7269777136697919Mouse
1302115Abhr3_mallergen-induced bronchial hyperresponsiveness 3 (mouse)Not determined7326656816903498Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7330353225179993Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7346321287493512Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360000072900000Mouse
25394569Skmw57_mskeletal muscle weight 57, gastroc (mouse)7457747016953936Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76500000133900000Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined71028944244289559Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71060637344606511Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71278145246781452Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71278145246781452Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1333306047333196Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71343577947435779Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:52
Count of miRNA genes:49
Interacting mature miRNAs:50
Transcripts:ENSMUST00000098811
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000098811   ⟹   ENSMUSP00000096408
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl713,450,841 - 13,473,449 (+)Ensembl
RefSeq Acc Id: ENSMUST00000204715   ⟹   ENSMUSP00000144997
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl713,450,856 - 13,473,379 (+)Ensembl
RefSeq Acc Id: NM_001033418   ⟹   NP_001028590
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39713,184,766 - 13,207,375 (+)NCBI
GRCm38713,450,841 - 13,473,450 (+)NCBI
MGSCv37714,036,190 - 14,058,798 (+)RGD
Celera711,068,322 - 11,090,377 (+)NCBI
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001301682   ⟹   NP_001288611
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39713,184,766 - 13,207,375 (+)NCBI
GRCm38713,450,841 - 13,473,450 (+)NCBI
Celera711,068,322 - 11,090,377 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001028590   ⟸   NM_001033418
- Peptide Label: isoform 1 precursor
- UniProtKB: Q3UW26 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001288611   ⟸   NM_001301682
- Peptide Label: isoform 2 precursor
- UniProtKB: Q3UW26 (UniProtKB/Swiss-Prot),   B7ZWD1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000096408   ⟸   ENSMUST00000098811
RefSeq Acc Id: ENSMUSP00000144997   ⟸   ENSMUST00000204715
Protein Domains
Fibronectin type-II

Promoters
RGD ID:6891862
Promoter ID:EPDNEW_M9382
Type:initiation region
Name:Bsph1_1
Description:Mus musculus binder of sperm protein homolog 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38713,450,878 - 13,450,938EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2685613 AgrOrtholog
Ensembl Genes ENSMUSG00000074378 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000096408 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000144997 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000098811 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000204715 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 2.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro FN_type2_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN_type2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kringle-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Seminal_plasma_PDC-109-like UniProtKB/Swiss-Prot
KEGG Report mmu:330470 UniProtKB/Swiss-Prot
MGD MGI:2685613 ENTREZGENE
NCBI Gene 330470 ENTREZGENE
Pfam fn2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Bsph1 PhenoGen
PIRSF Seminal_plasma_PDC-109 UniProtKB/Swiss-Prot
PROSITE FN2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FN2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57440 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B7ZWD1 ENTREZGENE, UniProtKB/TrEMBL
  BSPH1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary B2RVZ6 UniProtKB/Swiss-Prot