9330104G04Rik (RIKEN cDNA 9330104G04 gene) - Rat Genome Database

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Gene: 9330104G04Rik (RIKEN cDNA 9330104G04 gene) Mus musculus
Analyze
Symbol: 9330104G04Rik
Name: RIKEN cDNA 9330104G04 gene
RGD ID: 1607713
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC320950
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39716,605,279 - 16,608,811 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl716,605,272 - 16,608,811 (-)EnsemblGRCm39 Ensembl
GRCm38716,871,354 - 16,874,886 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl716,871,347 - 16,874,886 (-)EnsemblGRCm38mm10GRCm38
MGSCv37717,456,703 - 17,460,235 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera714,077,771 - 14,081,303 (-)NCBICelera
Cytogenetic Map7A2NCBI
cM Map79.15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:21267068  


Genomics

Variants

.
Variants in 9330104G04Rik
97 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:110
Count of miRNA genes:104
Interacting mature miRNAs:106
Transcripts:ENSMUST00000181501
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121698146Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121821047Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121821047Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1302115Abhr3_mallergen-induced bronchial hyperresponsiveness 3 (mouse)Not determined7331599616637423Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25394569Skmw57_mskeletal muscle weight 57, gastroc (mouse)7458046916687861Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined7998886743988984Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000181501
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl716,605,272 - 16,608,811 (-)Ensembl
GRCm38.p6 Ensembl716,871,347 - 16,874,886 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205647
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl716,606,869 - 16,608,811 (-)Ensembl
GRCm38.p6 Ensembl716,872,944 - 16,874,886 (-)Ensembl
RefSeq Acc Id: NR_152128
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39716,605,279 - 16,608,811 (-)NCBI
GRCm38716,871,354 - 16,874,886 (-)NCBI
Sequence:
Promoters
RGD ID:15093196
Promoter ID:EPDNEWNC_M1106
Type:single initiation site
Name:9330104G04Rik_1
Description:RIKEN cDNA 9330104G04 gene [Source:MGISymbol;Acc:MGI:2445112]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38716,874,880 - 16,874,940EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000097842 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000181501 ENTREZGENE
MGD MGI:2445112 ENTREZGENE
NCBI Gene 320950 ENTREZGENE
PhenoGen 9330104G04Rik PhenoGen
RNAcentral URS00009AFEF7 RNACentral