Ccdc9 (coiled-coil domain containing 9) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Ccdc9 (coiled-coil domain containing 9) Mus musculus
Analyze
Symbol: Ccdc9
Name: coiled-coil domain containing 9
RGD ID: 1618113
MGI Page MGI
Description: Predicted to enable RNA binding activity. Predicted to be part of exon-exon junction complex. Orthologous to human CCDC9 (coiled-coil domain containing 9).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2600011L02Rik; coiled-coil domain-containing protein 9; RIKEN cDNA 2600011L02 gene
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39716,005,938 - 16,020,713 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl716,007,967 - 16,020,720 (-)EnsemblGRCm39 Ensembl
GRCm38716,272,013 - 16,286,807 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl716,274,042 - 16,286,795 (-)EnsemblGRCm38mm10GRCm38
MGSCv37716,859,391 - 16,872,144 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36715,433,986 - 15,443,181 (-)NCBIMGSCv36mm8
Celera713,468,071 - 13,480,826 (-)NCBICelera
Cytogenetic Map7A2NCBI
cM Map78.78NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:15489334   PMID:16141072   PMID:16141073  
PMID:22794259   PMID:26496610   PMID:30196744   PMID:32325033   PMID:33124180  


Genomics

Comparative Map Data
Ccdc9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39716,005,938 - 16,020,713 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl716,007,967 - 16,020,720 (-)EnsemblGRCm39 Ensembl
GRCm38716,272,013 - 16,286,807 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl716,274,042 - 16,286,795 (-)EnsemblGRCm38mm10GRCm38
MGSCv37716,859,391 - 16,872,144 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36715,433,986 - 15,443,181 (-)NCBIMGSCv36mm8
Celera713,468,071 - 13,480,826 (-)NCBICelera
Cytogenetic Map7A2NCBI
cM Map78.78NCBI
CCDC9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381947,256,525 - 47,275,723 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1947,255,980 - 47,273,701 (+)EnsemblGRCh38hg38GRCh38
GRCh371947,759,782 - 47,775,210 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361952,451,632 - 52,467,050 (+)NCBINCBI36Build 36hg18NCBI36
Build 341952,451,631 - 52,467,048NCBI
Celera1944,563,607 - 44,579,090 (+)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1944,183,863 - 44,199,356 (+)NCBIHuRef
CHM1_11947,762,046 - 47,777,532 (+)NCBICHM1_1
T2T-CHM13v2.01950,081,834 - 50,097,265 (+)NCBIT2T-CHM13v2.0
Ccdc9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8186,105,717 - 86,119,811 (-)NCBIGRCr8
mRatBN7.2176,978,312 - 76,991,673 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl176,974,091 - 76,991,607 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx182,353,323 - 82,365,848 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0190,917,357 - 90,929,882 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0184,108,422 - 84,120,948 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0178,212,933 - 78,225,641 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl178,213,223 - 78,224,319 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0179,476,239 - 79,487,516 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera171,468,650 - 71,481,341 (-)NCBICelera
Cytogenetic Map1q21NCBI
Ccdc9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555741,190,611 - 1,203,274 (+)NCBIChiLan1.0ChiLan1.0
CCDC9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22053,395,742 - 53,415,703 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11955,265,650 - 55,285,769 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01944,239,002 - 44,258,129 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11952,897,087 - 52,914,540 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1952,897,092 - 52,911,731 (+)Ensemblpanpan1.1panPan2
CCDC9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11108,705,425 - 108,719,813 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1108,705,658 - 108,719,411 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1108,186,427 - 108,200,700 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01109,231,054 - 109,245,032 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1109,231,869 - 109,244,928 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11108,898,264 - 108,912,553 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01108,542,398 - 108,556,593 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01109,410,798 - 109,425,091 (-)NCBIUU_Cfam_GSD_1.0
Ccdc9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934919,363,995 - 19,377,940 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936664982,539 - 995,636 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl653,065,345 - 53,080,985 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1653,065,172 - 53,080,992 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2648,439,156 - 48,450,831 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1640,591,052 - 40,608,490 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl640,592,392 - 40,609,951 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607320,318,997 - 20,335,763 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248326,441,420 - 6,451,705 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ccdc9
852 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3374
Count of miRNA genes:831
Interacting mature miRNAs:1086
Transcripts:ENSMUST00000041010, ENSMUST00000118976, ENSMUST00000124084, ENSMUST00000129447, ENSMUST00000131963, ENSMUST00000137993, ENSMUST00000144186, ENSMUST00000145519, ENSMUST00000146085, ENSMUST00000146609, ENSMUST00000148741, ENSMUST00000150528, ENSMUST00000172670, ENSMUST00000174270
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
25394569Skmw57_mskeletal muscle weight 57, gastroc (mouse)7458046916687861Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121821047Mouse
1302115Abhr3_mallergen-induced bronchial hyperresponsiveness 3 (mouse)Not determined7331599616637423Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined7998886743988984Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121821047Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121698146Mouse

Markers in Region
RH132536  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38716,274,195 - 16,274,391UniSTSGRCm38
MGSCv37716,859,544 - 16,859,740UniSTSGRCm37
Celera713,468,224 - 13,468,420UniSTS
Cytogenetic Map7A2UniSTS
UniSTS:235605  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38716,274,065 - 16,274,173UniSTSGRCm38
MGSCv37716,859,414 - 16,859,522UniSTSGRCm37
Celera713,468,094 - 13,468,202UniSTS
Cytogenetic Map7A2UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001136471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001382411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001382412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001382413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001382414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001382415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001382416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006539922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006539925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006539926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006539927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC156630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY029379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR522661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000041010   ⟹   ENSMUSP00000035597
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl716,009,389 - 16,018,984 (-)Ensembl
GRCm38.p6 Ensembl716,275,464 - 16,285,059 (-)Ensembl
Ensembl Acc Id: ENSMUST00000118976   ⟹   ENSMUSP00000114088
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl716,007,970 - 16,020,715 (-)Ensembl
GRCm38.p6 Ensembl716,274,045 - 16,286,790 (-)Ensembl
Ensembl Acc Id: ENSMUST00000124084
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl716,009,402 - 16,014,622 (-)Ensembl
GRCm38.p6 Ensembl716,275,477 - 16,280,697 (-)Ensembl
Ensembl Acc Id: ENSMUST00000129447
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl716,010,519 - 16,015,091 (-)Ensembl
GRCm38.p6 Ensembl716,276,594 - 16,281,166 (-)Ensembl
Ensembl Acc Id: ENSMUST00000131963
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl716,009,940 - 16,010,622 (-)Ensembl
GRCm38.p6 Ensembl716,276,015 - 16,276,697 (-)Ensembl
Ensembl Acc Id: ENSMUST00000137993
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl716,014,551 - 16,015,731 (-)Ensembl
GRCm38.p6 Ensembl716,280,626 - 16,281,806 (-)Ensembl
Ensembl Acc Id: ENSMUST00000144186
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl716,016,616 - 16,020,698 (-)Ensembl
GRCm38.p6 Ensembl716,282,691 - 16,286,773 (-)Ensembl
Ensembl Acc Id: ENSMUST00000145519   ⟹   ENSMUSP00000119694
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl716,016,749 - 16,019,950 (-)Ensembl
GRCm38.p6 Ensembl716,282,824 - 16,286,025 (-)Ensembl
Ensembl Acc Id: ENSMUST00000146085   ⟹   ENSMUSP00000134049
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl716,009,795 - 16,012,309 (-)Ensembl
GRCm38.p6 Ensembl716,275,870 - 16,278,384 (-)Ensembl
Ensembl Acc Id: ENSMUST00000146609   ⟹   ENSMUSP00000134106
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl716,016,680 - 16,020,720 (-)Ensembl
GRCm38.p6 Ensembl716,282,755 - 16,286,795 (-)Ensembl
Ensembl Acc Id: ENSMUST00000148741   ⟹   ENSMUSP00000122708
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl716,016,435 - 16,020,705 (-)Ensembl
GRCm38.p6 Ensembl716,282,510 - 16,286,780 (-)Ensembl
Ensembl Acc Id: ENSMUST00000150528   ⟹   ENSMUSP00000133863
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl716,016,495 - 16,020,699 (-)Ensembl
GRCm38.p6 Ensembl716,282,570 - 16,286,774 (-)Ensembl
Ensembl Acc Id: ENSMUST00000172670
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl716,007,967 - 16,009,696 (-)Ensembl
GRCm38.p6 Ensembl716,274,042 - 16,275,771 (-)Ensembl
Ensembl Acc Id: ENSMUST00000174270   ⟹   ENSMUSP00000133798
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl716,016,444 - 16,019,461 (-)Ensembl
GRCm38.p6 Ensembl716,282,519 - 16,285,536 (-)Ensembl
RefSeq Acc Id: NM_001136471   ⟹   NP_001129943
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39716,007,967 - 16,020,705 (-)NCBI
GRCm38716,274,042 - 16,286,795 (-)NCBI
MGSCv37716,859,391 - 16,872,144 (-)RGD
Celera713,468,071 - 13,480,826 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001382411   ⟹   NP_001369340
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39716,007,967 - 16,020,705 (-)NCBI
GRCm38716,274,042 - 16,286,780 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001382412   ⟹   NP_001369341
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39716,007,967 - 16,020,705 (-)NCBI
GRCm38716,274,042 - 16,286,780 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001382413   ⟹   NP_001369342
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39716,007,967 - 16,019,942 (-)NCBI
GRCm38716,274,042 - 16,286,017 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001382414   ⟹   NP_001369343
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39716,009,398 - 16,020,705 (-)NCBI
GRCm38716,275,473 - 16,286,780 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001382415   ⟹   NP_001369344
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39716,009,398 - 16,020,705 (-)NCBI
GRCm38716,275,473 - 16,286,780 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001382416   ⟹   NP_001369345
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39716,009,398 - 16,020,705 (-)NCBI
GRCm38716,275,473 - 16,286,780 (-)NCBI
Sequence:
RefSeq Acc Id: NM_172297   ⟹   NP_758501
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39716,009,398 - 16,018,584 (-)NCBI
GRCm38716,275,464 - 16,284,659 (-)NCBI
MGSCv37716,859,391 - 16,872,144 (-)RGD
Celera713,468,071 - 13,480,826 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006539922   ⟹   XP_006539985
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39716,007,967 - 16,019,381 (-)NCBI
GRCm38716,274,042 - 16,285,456 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006539925   ⟹   XP_006539988
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39716,007,967 - 16,020,713 (-)NCBI
GRCm38716,274,042 - 16,286,807 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006539926   ⟹   XP_006539989
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39716,005,938 - 16,020,713 (-)NCBI
GRCm38716,272,013 - 16,286,807 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006539927   ⟹   XP_006539990
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39716,005,938 - 16,020,713 (-)NCBI
GRCm38716,272,013 - 16,286,807 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011250560   ⟹   XP_011248862
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39716,007,967 - 16,020,713 (-)NCBI
GRCm38716,274,042 - 16,286,807 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030242556   ⟹   XP_030098416
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39716,005,938 - 16,020,713 (-)NCBI
GRCm38716,272,013 - 16,286,807 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153077   ⟹   XP_036008970
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39716,007,967 - 16,020,120 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153078   ⟹   XP_036008971
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39716,007,967 - 16,019,381 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153079   ⟹   XP_036008972
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39716,007,967 - 16,020,713 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153080   ⟹   XP_036008973
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39716,009,393 - 16,020,120 (-)NCBI
Sequence:
RefSeq Acc Id: NP_758501   ⟸   NM_172297
- Peptide Label: isoform 2
- UniProtKB: Q8VC31 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001129943   ⟸   NM_001136471
- Peptide Label: isoform 1
- UniProtKB: D3YW42 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006539990   ⟸   XM_006539927
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006539989   ⟸   XM_006539926
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006539985   ⟸   XM_006539922
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006539988   ⟸   XM_006539925
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011248862   ⟸   XM_011250560
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030098416   ⟸   XM_030242556
- Peptide Label: isoform X6
RefSeq Acc Id: NP_001369340   ⟸   NM_001382411
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001369341   ⟸   NM_001382412
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001369342   ⟸   NM_001382413
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001369343   ⟸   NM_001382414
- Peptide Label: isoform 2
- UniProtKB: Q8VC31 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001369344   ⟸   NM_001382415
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001369345   ⟸   NM_001382416
- Peptide Label: isoform 6
Ensembl Acc Id: ENSMUSP00000133863   ⟸   ENSMUST00000150528
Ensembl Acc Id: ENSMUSP00000119694   ⟸   ENSMUST00000145519
Ensembl Acc Id: ENSMUSP00000114088   ⟸   ENSMUST00000118976
Ensembl Acc Id: ENSMUSP00000134106   ⟸   ENSMUST00000146609
Ensembl Acc Id: ENSMUSP00000134049   ⟸   ENSMUST00000146085
Ensembl Acc Id: ENSMUSP00000133798   ⟸   ENSMUST00000174270
Ensembl Acc Id: ENSMUSP00000035597   ⟸   ENSMUST00000041010
Ensembl Acc Id: ENSMUSP00000122708   ⟸   ENSMUST00000148741
RefSeq Acc Id: XP_036008972   ⟸   XM_036153079
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036008970   ⟸   XM_036153077
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036008971   ⟸   XM_036153078
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036008973   ⟸   XM_036153080
- Peptide Label: isoform X8
- UniProtKB: G3X927 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8VC31-F1-model_v2 AlphaFold Q8VC31 1-543 view protein structure

Promoters
RGD ID:6891916
Promoter ID:EPDNEW_M9409
Type:multiple initiation site
Name:Ccdc9_1
Description:Mus musculus coiled-coil domain containing 9 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38716,286,774 - 16,286,834EPDNEW
RGD ID:6840801
Promoter ID:MM_KWN:48893
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain
Transcripts:OTTMUST00000072615
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36716,861,561 - 16,862,712 (-)MPROMDB
RGD ID:6840795
Promoter ID:MM_KWN:48894
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain,   Kidney
Transcripts:OTTMUST00000072614
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36716,863,414 - 16,863,914 (-)MPROMDB
RGD ID:6840797
Promoter ID:MM_KWN:48895
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Kidney
Transcripts:OTTMUST00000072606,   OTTMUST00000072613
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36716,866,086 - 16,866,892 (-)MPROMDB
RGD ID:6840791
Promoter ID:MM_KWN:48897
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Lung
Transcripts:OTTMUST00000072604
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36716,870,879 - 16,871,379 (-)MPROMDB
RGD ID:6840794
Promoter ID:MM_KWN:48898
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_2Hour,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000072611
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36716,871,831 - 16,872,331 (-)MPROMDB
RGD ID:6840796
Promoter ID:MM_KWN:48899
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour
Transcripts:NM_001136471,   OTTMUST00000072607,   OTTMUST00000072608,   OTTMUST00000072609,   OTTMUST00000072610
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36716,871,864 - 16,872,364 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921443 AgrOrtholog
Ensembl Genes ENSMUSG00000041375 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000041010 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000041010.16 UniProtKB/Swiss-Prot
  ENSMUST00000118976 ENTREZGENE
  ENSMUST00000118976.10 UniProtKB/TrEMBL
  ENSMUST00000145519.4 UniProtKB/TrEMBL
  ENSMUST00000146085.3 UniProtKB/TrEMBL
  ENSMUST00000146609.3 UniProtKB/TrEMBL
  ENSMUST00000148741.10 UniProtKB/TrEMBL
  ENSMUST00000150528.9 UniProtKB/TrEMBL
  ENSMUST00000174270.9 UniProtKB/TrEMBL
InterPro DUF4594 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:243846 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1921443 ENTREZGENE
NCBI Gene Ccdc9 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15635 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF4594 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ccdc9 PhenoGen
UniProt A0A0G2JDC5_MOUSE UniProtKB/TrEMBL
  CCDC9_MOUSE UniProtKB/Swiss-Prot
  D3YW42 ENTREZGENE, UniProtKB/TrEMBL
  D3Z1Q6_MOUSE UniProtKB/TrEMBL
  D6RFU6_MOUSE UniProtKB/TrEMBL
  G3UXR7_MOUSE UniProtKB/TrEMBL
  G3UXX6_MOUSE UniProtKB/TrEMBL
  G3UYE3_MOUSE UniProtKB/TrEMBL
  G3X927 ENTREZGENE, UniProtKB/TrEMBL
  Q8VC31 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-21 Ccdc9  coiled-coil domain containing 9  2600011L02Rik  RIKEN cDNA 2600011L02 gene  Symbol and/or name change 5135510 APPROVED
2024-08-21 2600011L02Rik  RIKEN cDNA 2600011L02 gene  Ccdc9  coiled-coil domain containing 9  Symbol and/or name change 5135510 APPROVED