Mrps12 (mitochondrial ribosomal protein S12)

Gene: Mrps12 (mitochondrial ribosomal protein S12) Mus musculus

Analyze

Symbol:

Mrps12

Name:

mitochondrial ribosomal protein S12

RGD ID:

1552385

MGI Page

MGI

Description:

Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial translation. Located in mitochondrion. Is expressed in several structures, including early conceptus; gonad; heart; liver; and metanephros. Orthologous to human MRPS12 (mitochondrial ribosomal protein S12).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

28S ribosomal protein S12, mitochondrial; AI327385; mitoribosomal protein s12; MRP-S12; MT-RPS12; ribosomal protein, mitochondrial, S12; rp; Rpm; Rpms12; rps12; S12mt; small ribosomal subunit protein uS12m

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MRPS12 (mitochondrial ribosomal protein S12)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Mrps12 (mitochondrial ribosomal protein S12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Mrps12 (mitochondrial ribosomal protein S12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MRPS12 (mitochondrial ribosomal protein S12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MRPS12 (mitochondrial ribosomal protein S12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mrps12 (mitochondrial ribosomal protein S12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MRPS12 (mitochondrial ribosomal protein S12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MRPS12 (mitochondrial ribosomal protein S12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mrps12 (mitochondrial ribosomal protein S12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Mrps12 (mitochondrial ribosomal protein S12)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	MRPS12 (mitochondrial ribosomal protein S12)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-17e16.10	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Saccharomyces cerevisiae (baker's yeast):	MRPS12	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	mrps-12	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	tko	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	mrps12	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	28,439,066 - 28,441,246 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	28,439,066 - 28,441,245 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	28,739,641 - 28,741,821 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	28,739,641 - 28,741,820 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	29,524,660 - 29,526,800 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	28,448,401 - 28,450,542 (-)	NCBI		MGSCv36	mm8
Celera	7	23,300,048 - 23,302,188 (-)	NCBI		Celera
Cytogenetic Map	7	B1	NCBI
cM Map	7	16.91	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

maturity-onset diabetes of the young type 1 (ISO)

type 2 diabetes mellitus (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (EXP)

1,2-dimethylhydrazine (EXP)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (ISO)

2-palmitoylglycerol (ISO)

6-propyl-2-thiouracil (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amiodarone (EXP)

amitrole (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenous acid (ISO)

aspartame (EXP)

benzo[a]pyrene (EXP,ISO)

bisphenol A (EXP,ISO)

bortezomib (ISO)

cadmium atom (EXP)

cadmium dichloride (EXP)

calcitriol (ISO)

calyculin a (EXP)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

diarsenic trioxide (ISO)

diuron (ISO)

enzyme inhibitor (ISO)

ethyl methanesulfonate (ISO)

fenthion (EXP)

finasteride (ISO)

fipronil (ISO)

folic acid (EXP)

formaldehyde (ISO)

hydralazine (ISO)

lead diacetate (EXP)

lead(0) (ISO)

lipopolysaccharide (ISO)

menadione (ISO)

methidathion (EXP)

methimazole (ISO)

methyl methanesulfonate (ISO)

monosodium L-glutamate (EXP)

N(4)-hydroxycytidine (EXP)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (EXP)

pregnenolone 16alpha-carbonitrile (ISO)

resveratrol (EXP)

sodium arsenite (ISO)

sulfadimethoxine (ISO)

tetracycline (EXP)

thioacetamide (ISO)

Tributyltin oxide (EXP)

tunicamycin (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mitochondrial translation (ISS,NAS)

translation (IBA)

Cellular Component

mitochondrial inner membrane (NAS)

mitochondrial small ribosomal subunit (ISO,ISS,NAS)

mitochondrion (HDA)

ribonucleoprotein complex (IEA)

ribosome (IBA)

small ribosomal subunit (IEA)

Molecular Function

protein binding (ISO)

structural constituent of ribosome (IBA,ISS)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal heart left ventricle size (IAGP)

abnormal hepatocyte morphology (IAGP)

abnormal mitochondrial ATP synthesis coupled electron transport (IAGP)

abnormal mitochondrial physiology (IAGP)

abnormal translation (IAGP)

decreased cardiac muscle contractility (IAGP)

decreased exploration in new environment (IEA)

dilated cardiomyopathy (IAGP)

embryonic lethality prior to organogenesis (IEA)

increased cholesterol level (IAGP)

increased hepatocyte proliferation (IAGP)

increased mitochondrial DNA content (IAGP)

preweaning lethality, complete penetrance (IEA)

small heart (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	MGDs mouse GO annotations	MGD data from the GO Consortium
2.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9434165	PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:11402041	PMID:12477932	PMID:14610273	PMID:14651853	PMID:15489334	PMID:16141072	PMID:16141073
PMID:17179180	PMID:18614015	PMID:18799693	PMID:19439209	PMID:21873635	PMID:25838379	PMID:26919559	PMID:27023846	PMID:27480124	PMID:31721250	PMID:32325033	PMID:32987154
PMID:34096683	PMID:36114006

Genomics

Comparative Map Data

Mrps12
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	28,439,066 - 28,441,246 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	28,439,066 - 28,441,245 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	28,739,641 - 28,741,821 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	28,739,641 - 28,741,820 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	29,524,660 - 29,526,800 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	28,448,401 - 28,450,542 (-)	NCBI		MGSCv36	mm8
Celera	7	23,300,048 - 23,302,188 (-)	NCBI		Celera
Cytogenetic Map	7	B1	NCBI
cM Map	7	16.91	NCBI

MRPS12
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	38,930,944 - 38,933,168 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	38,930,944 - 38,933,168 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	39,421,584 - 39,423,808 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	44,113,188 - 44,115,500 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	44,113,433 - 44,115,497	NCBI
Celera	19	36,223,777 - 36,226,089 (+)	NCBI		Celera
Cytogenetic Map	19	q13.2	NCBI
HuRef	19	35,867,947 - 35,870,259 (+)	NCBI		HuRef
CHM1_1	19	39,421,743 - 39,424,055 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	41,734,913 - 41,737,137 (+)	NCBI		T2T-CHM13v2.0

Mrps12
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	93,153,424 - 93,156,422 (-)	NCBI		GRCr8
mRatBN7.2	1	84,025,896 - 84,028,896 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	84,025,899 - 84,028,780 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	89,435,804 - 89,438,698 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	97,894,732 - 97,897,626 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	91,191,660 - 91,194,554 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	86,920,679 - 86,923,626 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	86,920,680 - 86,923,575 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	88,101,811 - 88,104,707 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	83,845,161 - 83,848,056 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	83,923,279 - 83,926,153 (-)	NCBI
Celera	1	78,418,331 - 78,421,225 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

Mrps12
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	600,309 - 603,652 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955468	600,309 - 603,652 (-)	NCBI	ChiLan1.0	ChiLan1.0

MRPS12
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	45,234,198 - 45,236,509 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	47,105,004 - 47,107,098 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	36,037,185 - 36,039,801 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	44,586,124 - 44,588,589 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	44,586,124 - 44,588,589 (+)	Ensembl	panpan1.1		panPan2

MRPS12
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	114,189,101 - 114,192,557 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	114,188,996 - 114,192,410 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	113,590,587 - 113,594,248 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	114,788,811 - 114,792,470 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	114,788,863 - 114,792,276 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	114,346,558 - 114,350,219 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	113,979,732 - 113,983,393 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	114,975,466 - 114,979,126 (-)	NCBI		UU_Cfam_GSD_1.0

Mrps12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	13,443,701 - 13,447,349 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936661	1,871,947 - 1,875,418 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936661	1,871,934 - 1,875,418 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MRPS12
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	47,728,551 - 47,736,050 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	47,728,518 - 47,732,042 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	43,276,419 - 43,278,223 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MRPS12
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	33,551,812 - 33,554,266 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	33,551,679 - 33,554,575 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	11,574,309 - 11,576,763 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mrps12
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624794	12,280,654 - 12,284,029 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624794	12,280,613 - 12,284,035 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Mrps12
44 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	385
Count of miRNA genes:	239
Interacting mature miRNAs:	250
Transcripts:	ENSMUST00000056078, ENSMUST00000165004, ENSMUST00000165246, ENSMUST00000171183
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301572	Sluc30_m	susceptibility to lung cancer 30 (mouse)			Not determined		7	2431696	36431844	Mouse
1300722	Sle3_m	systemic lupus erythmatosus susceptibility 3 (mouse)			Not determined		7	3511728	87142720	Mouse
38501068	Tip1_m	tuberculosis immunophenotype 1, spleen CFU (mouse)					7	3602999	72549748	Mouse
25314307	Mlh1fc2_m	MLH1 foci count 2 (mouse)					7	6502999	133501729	Mouse
12792978	Fbmd3_m	femoral bone mineral density 3, females only (mouse)					7	7050288	142367832	Mouse
1357699	Nhdlq6_m	non-HDL QTL 6 (mouse)			Not determined		7	9988867	43988984	Mouse
1558893	Spir1_m	Streptococcus pneumoniae infection resistance 1 (mouse)			Not determined		7	10305798	44305936	Mouse
10449139	Eosn1_m	eosinophil differential 1 (mouse)					7	12480877	46480877	Mouse
10449158	Eosn3_m	eosinophil differential 3 (mouse)					7	12480877	46480877	Mouse
4141566	Femwf8_m	femur work to failure 8 (mouse)			Not determined			13032485	47032621	Mouse
11522751	Cocia17_m	cocaine-induced activity, QTL 17 (mouse)					7	13135204	47135204	Mouse
25314314	Sccor1_m	synaptonemal complex length to mean MLH1 count ratio 1 (mouse)					7	13333925	47349748	Mouse
1559016	Drsi_m	DCC-related Spp1 induction (mouse)			Not determined		7	16637293	49159331	Mouse
1301041	Prnr2_m	prion resistance 2 (mouse)			Not determined		7	18728794	39674033	Mouse
10412199	Sst2_m	susceptibility to tuberculosis 2 (mouse)			Not determined		7	18728794	119485380	Mouse
1301158	Eae4_m	susceptibility to experimental allergic encephalomyelitis 4 (mouse)			Not determined		7	19147398	141919804	Mouse
1301622	Eae12_m	susceptibility to experimental allergic encephalomyelitis 12 (mouse)			Not determined		7	19280015	53280104	Mouse
1301052	Bhr6_m	bronchial hyperresponsiveness 6 (mouse)			Not determined		7	19842250	53842367	Mouse
12904742	Litsq2_m	litter size QTL 2 (mouse)					7	22673887	56674033	Mouse
1301709	Bdt4_m	bone density traits 4 (mouse)			Not determined		7	22888572	56888716	Mouse
11354952	Pdcc1_m	plasmacytoid dentritic cell compartment 1 (mouse)					7	23066531	57066531	Mouse
1301969	Lbw5_m	lupus NZB x NZW 5 (mouse)			Not determined		7	26847615	60851775	Mouse
7394747	asp3_m	audiogenic seizure prone 3 (mouse)			Not determined		7	27305798	36842367	Mouse
12790989	Tgl6_m	triglyceride 6 (mouse)					7	27540549	61540549	Mouse

Markers in Region

RH129132

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	7	28,739,693 - 28,739,888	UniSTS	GRCm38
MGSCv37	7	29,524,712 - 29,524,907	UniSTS	GRCm37
Celera	7	23,300,100 - 23,300,295	UniSTS
Cytogenetic Map	7	A3	UniSTS

AI327385

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	7	28,739,817 - 28,739,934	UniSTS	GRCm38
MGSCv37	7	29,524,836 - 29,524,953	UniSTS	GRCm37
Celera	7	23,300,224 - 23,300,341	UniSTS
Cytogenetic Map	7	A3	UniSTS
Whitehead/MRC_RH	7	392.99	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001360250	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001360252	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001360254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_011885	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AA606858	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC171210	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK146730	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC027522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CA323119	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466593	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	Y11682	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000056078 ⟹ ENSMUSP00000062066

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	28,439,067 - 28,441,245 (-)	Ensembl
GRCm38.p6 Ensembl	7	28,739,642 - 28,741,820 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000165004 ⟹ ENSMUSP00000129492

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	28,439,317 - 28,440,246 (-)	Ensembl
GRCm38.p6 Ensembl	7	28,739,892 - 28,740,821 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000165246

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	28,439,066 - 28,439,492 (-)	Ensembl
GRCm38.p6 Ensembl	7	28,739,641 - 28,740,067 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000171183 ⟹ ENSMUSP00000132443

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	7	28,439,066 - 28,441,195 (-)	Ensembl
GRCm38.p6 Ensembl	7	28,739,641 - 28,741,770 (-)	Ensembl

RefSeq Acc Id:

NM_001360250 ⟹ NP_001347179

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	7	28,439,066 - 28,441,246 (-)	NCBI
GRCm38	7	28,739,641 - 28,741,821 (-)	NCBI

Sequence:

show sequence

CCCGGAAGGGGCTGGAGGTAGGGGTTGGCGTGTGTGCGACCCCGCTAGGTTGGTGAGGTGGGTG
CAGTTATCTGTGATCCAGATCTCTCCTCTCTCCTCAGTTTCCCCTTCCAGTATCCGGGCAAGGG
CGGTTGGGTCCTTGGGGGCCTACTCAGAAGGAGACTGAATTTGCGAGGGGACTTTCTGTTTTAG
AGGAGATTCTAGAAGGCTCTGAGAGTGGGTTTCTGGTCCCAACCTCCTTTCTGAATGTCTTCTC
TCCTAATACAGGGACGCTGCAGGCGGCGAGATGTCCTGGCCCGGCCTTCTTTATGGCCTCACCA
CGTCCCTCAGTCGTGGCCTAGCCCTCGCTCCCCAGCTCTGGGCCGCCCGTTCCATGGCCACCCT
GAACCAGATGCACCGCTTAGGCCCCCGGAAGGAACCCCCTAAGCGTCTGGGCCCCACAGAGGGC
CGGCCCCAGCTGAAGGGTGTGGTGTTGCGCACATTCATCCGAAAGCCGAAGAAGCCCAACTCCG
CCAACCGCAAGTGCTGCCGAGTCCGCCTCAGCACAGGCAAAGAGGCTGTCTGCTTCATCCCCGG
GGAGGGCCACACCCTGCAGGAGCATCACGTGGTCCTCGTGGAGGGTGGTCGCACCCAGGACCTG
CCTGGGGTCAAACTCAAAGTTGTGAGGGGCAAGTATGACTGCGGCCACGTGCAAAAGAAGAAAT
GACAGTAATTCACAGTGGTCTGGCACTCGATCCTTGGAAACGGGTTCTTCCTACTCCCGGGTCT
TGGGCTCAAATCTTACTGTGATTCAGCAAGACTGTTGTTAACCTGCAAGAGTACTGAAGGTGAA
TTGGAAGGCAGTACCCCTGTGCGTCCATGTTCAGTGTTTGCAGGTTGACCTCATGTGCTGGGAT
GGGGTTTGTAATAAATATATCTTCAGGTTGTGATGTTA

hide sequence

RefSeq Acc Id:

NM_001360252 ⟹ NP_001347181

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	7	28,439,066 - 28,441,246 (-)	NCBI
GRCm38	7	28,739,641 - 28,741,821 (-)	NCBI

Sequence:

show sequence

CCCGGAAGGGGCTGGAGGGACGCTGCAGGCGGCGAGATGTCCTGGCCCGGCCTTCTTTATGGCC
TCACCACGTCCCTCAGTCGTGGCCTAGCCCTCGCTCCCCAGCTCTGGGCCGCCCGTTCCATGGC
CACCCTGAACCAGATGCACCGCTTAGGCCCCCGGAAGGAACCCCCTAAGCGTCTGGGCCCCACA
GAGGGCCGGCCCCAGCTGAAGGGTGTGGTGTTGCGCACATTCATCCGAAAGCCGAAGAAGCCCA
ACTCCGCCAACCGCAAGTGCTGCCGAGTCCGCCTCAGCACAGGCAAAGAGGCTGTCTGCTTCAT
CCCCGGGGAGGGCCACACCCTGCAGGAGCATCACGTGGTCCTCGTGGAGGGTGGTCGCACCCAG
GACCTGCCTGGGGTCAAACTCAAAGTTGTGAGGGGCAAGTATGACTGCGGCCACGTGCAAAAGA
AGAAATGACAGTAATTCACAGTGGTCTGGCACTCGATCCTTGGAAACGGGTTCTTCCTACTCCC
GGGTCTTGGGCTCAAATCTTACTGTGATTCAGCAAGACTGTTGTTAACCTGCAAGAGTACTGAA
GGTGAATTGGAAGGCAGTACCCCTGTGCGTCCATGTTCAGTGTTTGCAGGTTGACCTCATGTGC
TGGGATGGGGTTTGTAATAAATATATCTTCAGGTTGTGATGTTA

hide sequence

RefSeq Acc Id:

NM_001360254 ⟹ NP_001347183

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	7	28,439,066 - 28,440,246 (-)	NCBI
GRCm38	7	28,739,641 - 28,740,821 (-)	NCBI

Sequence:

show sequence

AAGAAGAAGAAGTTTAGTTATTCATTCACGTGCTATTTTTCTAATTCTAAGACGGGCCACCCAT
TGGAGGACAACTTTTATGTTCCTAGACATTGCCCAGACATCAGGCCTAGCCCTCGCTCCCCAGC
TCTGGGCCGCCCGTTCCATGGCCACCCTGAACCAGATGCACCGCTTAGGCCCCCGGAAGGAACC
CCCTAAGCGTCTGGGCCCCACAGAGGGCCGGCCCCAGCTGAAGGGTGTGGTGTTGCGCACATTC
ATCCGAAAGCCGAAGAAGCCCAACTCCGCCAACCGCAAGTGCTGCCGAGTCCGCCTCAGCACAG
GCAAAGAGGCTGTCTGCTTCATCCCCGGGGAGGGCCACACCCTGCAGGAGCATCACGTGGTCCT
CGTGGAGGGTGGTCGCACCCAGGACCTGCCTGGGGTCAAACTCAAAGTTGTGAGGGGCAAGTAT
GACTGCGGCCACGTGCAAAAGAAGAAATGACAGTAATTCACAGTGGTCTGGCACTCGATCCTTG
GAAACGGGTTCTTCCTACTCCCGGGTCTTGGGCTCAAATCTTACTGTGATTCAGCAAGACTGTT
GTTAACCTGCAAGAGTACTGAAGGTGAATTGGAAGGCAGTACCCCTGTGCGTCCATGTTCAGTG
TTTGCAGGTTGACCTCATGTGCTGGGATGGGGTTTGTAATAAATATATCTTCAGGTTGTGATGT
TA

hide sequence

RefSeq Acc Id:

NM_011885 ⟹ NP_036015

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	7	28,439,066 - 28,441,246 (-)	NCBI
GRCm38	7	28,739,641 - 28,741,821 (-)	NCBI
MGSCv37	7	29,524,660 - 29,526,800 (-)	RGD
Celera	7	23,300,048 - 23,302,188 (-)	RGD
cM Map	7		ENTREZGENE

Sequence:

show sequence

CCCGGAAGGGGCTGGAGGTAGGGGTTGGCGTGTGTGCGACCCCGCTAGGTTGGTGAGGGACGCT
GCAGGCGGCGAGATGTCCTGGCCCGGCCTTCTTTATGGCCTCACCACGTCCCTCAGTCGTGGCC
TAGCCCTCGCTCCCCAGCTCTGGGCCGCCCGTTCCATGGCCACCCTGAACCAGATGCACCGCTT
AGGCCCCCGGAAGGAACCCCCTAAGCGTCTGGGCCCCACAGAGGGCCGGCCCCAGCTGAAGGGT
GTGGTGTTGCGCACATTCATCCGAAAGCCGAAGAAGCCCAACTCCGCCAACCGCAAGTGCTGCC
GAGTCCGCCTCAGCACAGGCAAAGAGGCTGTCTGCTTCATCCCCGGGGAGGGCCACACCCTGCA
GGAGCATCACGTGGTCCTCGTGGAGGGTGGTCGCACCCAGGACCTGCCTGGGGTCAAACTCAAA
GTTGTGAGGGGCAAGTATGACTGCGGCCACGTGCAAAAGAAGAAATGACAGTAATTCACAGTGG
TCTGGCACTCGATCCTTGGAAACGGGTTCTTCCTACTCCCGGGTCTTGGGCTCAAATCTTACTG
TGATTCAGCAAGACTGTTGTTAACCTGCAAGAGTACTGAAGGTGAATTGGAAGGCAGTACCCCT
GTGCGTCCATGTTCAGTGTTTGCAGGTTGACCTCATGTGCTGGGATGGGGTTTGTAATAAATAT
ATCTTCAGGTTGTGATGTTAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001347179	(Get FASTA)	NCBI Sequence Viewer
	NP_001347181	(Get FASTA)	NCBI Sequence Viewer
	NP_001347183	(Get FASTA)	NCBI Sequence Viewer
	NP_036015	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH27522	(Get FASTA)	NCBI Sequence Viewer
	CAA72378	(Get FASTA)	NCBI Sequence Viewer
	EDL24121	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000062066
	ENSMUSP00000062066.9
	ENSMUSP00000129492
	ENSMUSP00000129492.2
	ENSMUSP00000132443
	ENSMUSP00000132443.2
GenBank Protein	O35680	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_036015 ⟸ NM_011885
- Peptide Label:	isoform a precursor
- UniProtKB:	O35680 (UniProtKB/Swiss-Prot), E9PUY1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSWPGLLYGLTTSLSRGLALAPQLWAARSMATLNQMHRLGPRKEPPKRLGPTEGRPQLKGVVLR TFIRKPKKPNSANRKCCRVRLSTGKEAVCFIPGEGHTLQEHHVVLVEGGRTQDLPGVKLKVVRG KYDCGHVQKKK hide sequence

RefSeq Acc Id:	NP_001347181 ⟸ NM_001360252
- Peptide Label:	isoform a precursor
- UniProtKB:	O35680 (UniProtKB/Swiss-Prot), E9PUY1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001347179 ⟸ NM_001360250
- Peptide Label:	isoform a precursor
- UniProtKB:	O35680 (UniProtKB/Swiss-Prot), E9PUY1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001347183 ⟸ NM_001360254
- Peptide Label:	isoform b
- UniProtKB:	E9PUY1 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSMUSP00000132443 ⟸ ENSMUST00000171183

RefSeq Acc Id:

ENSMUSP00000129492 ⟸ ENSMUST00000165004

RefSeq Acc Id:

ENSMUSP00000062066 ⟸ ENSMUST00000056078

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-O35680-F1-model_v2	AlphaFold	O35680	1-139	view protein structure

Promoters

RGD ID:

6892480

Promoter ID:

EPDNEW_M9691

Type:

initiation region

Name:

Mrps12_1

Description:

Mus musculus mitochondrial ribosomal protein S12 , transcriptvariant 2, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	7	28,741,788 - 28,741,848	EPDNEW

RGD ID:

6842026

Promoter ID:

MM_KWN:49661

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

ENSMUST00000056078, UC009FZP.1, UC009FZQ.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	7	29,526,756 - 29,527,457 (+)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1346333	AgrOrtholog
Ensembl Genes	ENSMUSG00000045948	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000056078	ENTREZGENE
	ENSMUST00000056078.9	UniProtKB/Swiss-Prot
	ENSMUST00000165004	ENTREZGENE
	ENSMUST00000165004.2	UniProtKB/TrEMBL
	ENSMUST00000171183	ENTREZGENE
	ENSMUST00000171183.2	UniProtKB/Swiss-Prot
Gene3D-CATH	2.40.50.140	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	NA-bd_OB-fold	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ribosomal_S12/S23	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ribosomal_S12_bac	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:24030	UniProtKB/Swiss-Prot
MGD	MGI:1346333	ENTREZGENE
NCBI Gene	24030	ENTREZGENE
PANTHER	28S RIBOSOMAL PROTEIN S12, MITOCHONDRIAL	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR11652	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Ribosom_S12_S23	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Mrps12	PhenoGen
PIRSF	Ribosomal_S12/S23	UniProtKB/TrEMBL
PRINTS	RIBOSOMALS12	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	RIBOSOMAL_S12	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF50249	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	E9PUY1	ENTREZGENE, UniProtKB/TrEMBL
	O35680	ENTREZGENE, UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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